Faculty
  • LSHTM Organisational Structure (3657)
  • Faculty of Epidemiology and Population Health (2389)
  • Dept of Infectious Disease Epidemiology (-2023) (826)
    Number of items at this level: 826.
    A
  • vaccine-impact/epi_covid. (2020) Abbas, Kaja M.
  • Repository for manuscript: "Demographics, perceptions, and socio-economic factors affecting influenza vaccination among adults in the United States". (2018) Abbas, Kaja M., Kang, Gloria J., Chen, Daniel, Werre, Stephen R., Marathe, Achla
  • seabbs/AssessBCGPolicyChange. (2019) Abbott, Sam
  • seabbs/EstZoonoticTB. (2019) Abbott, Sam
  • seabbs/ModelTBBCGEngland. (2019) Abbott, Sam
  • seabbs/SpeedyMarkov. (2019) Abbott, Sam
  • seabbs/getTBinR. (2020) Abbott, Sam, Bekker-Nielsen Dunbar, Maria, Smith, Arfon
  • Collated Results of the National and Subnational Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Tests, Hospital Admissions and Deaths. (2020) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
  • Continent Summary Reproduction Number (R) Based on Reported Cases. (2021) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
  • Continent Summary Reproduction Number (R) Based on Reported Deaths. (2020) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
  • Local Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Admissions. (2021) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
  • Local Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Deaths. (2021) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
  • Local Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Test Results. (2020) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
  • National Reproduction Number (R) Based on Reported Cases. (2020) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
  • National Reproduction Number (R) Estimates Based on Reported Deaths. (2020) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
  • National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Belgium Based on Test Results. (2021) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
  • National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Brazil Based on Test Results. (2020) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
  • National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Canada Based on Test Results. (2021) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
  • National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Colombia Based on Test Results. (2021) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
  • National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Germany Based on Test Results. (2020) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
  • National and Subnational Estimates of the Covid 19 Reproduction Number (R) for India Based on Test Results. (2020) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
  • National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Italy Based on Test Results. (2020) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
  • National and Subnational Estimates of the Covid 19 Reproduction Number (R) for South Africa Based on Test Results. (2021) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
  • National and Subnational Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Deaths. (2020) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
  • National and Subnational Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Hospital Admissions. (2020) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
  • National and Subnational Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Test Results. (2020) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
  • National and Subnational Estimates of the Covid 19 Reproduction Number (R) for the United States of America Based on Test Results. (2020) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
  • epiforecasts/simplified-forecaster-evaluation. (2022) Abbott, Sam, Bosse, Nikos
  • epiforecasts/EpiSoon. (2020) Abbott, Sam, Bosse, Nikos, DeWitt, Michael, Rau, Andrea, Chateigner, Aurelien, Mareschal, Sylvain, Hellewell, Joel
  • epiforecasts/forecast.vocs. (2021) Abbott, Sam, Bracher, Johannes
  • idmodelr: Infectious Disease Model Library and Utilities. (2020) Abbott, Sam, Endo, Akira
  • epiforecasts/covid19.sgene.utla.rt. (2021) Abbott, Sam, Funk, Sebastian
  • Pathways to Low Fertility. (2020) Abbott, Sam, Funk, Sebastian, Munday, James D., Hellewell, Joel
  • Wuhan Seeding Vs Transmission. (2020) Abbott, Sam, Funk, Sebastian, Munday, James D., Hellewell, Joel
  • epiforecasts/WuhanSeedingVsTransmission: Resubmission to Wellcome Open Research. (2020) Abbott, Sam, Funk, Sebastian, Munday, James D., Hellewell, Joel
  • seabbs/CovidInterventionReview: CC0 license. (2020) Abbott, Sam, Gaythorpe, Katy A.M., Imai, Natsuko, Liu, Yang
  • epiforecasts/ringbp. (2023) Abbott, Sam, Hellewell, Joel, Lucas, Tim, Funk, Sebastian, Gimma, Amy
  • epiforecasts/EpiNow2. (2021) Abbott, Sam, Hickson, Joe, Badr, Hamada S., Funk, Sebastian, Monticone, Pietro, Ellis, Peter, Munday, James D., Allen, Jamie, Pearson, Carl A. B., DeWitt, Michael, Bosse, Nikos, Meakin, Sophie
  • epiforecasts/covid19.nhs.data: Initial release. (2021) Abbott, Sam, Meakin, Sophie
  • epiforecasts/epinowcast. (2021) Abbott, Sam, Monticone, Pietro
  • seabbs/ecdc-weekly-growth-forecasts. (2022) Abbott, Sam, Sherratt, Katharine
  • Real-time estimation of the time-varying transmission advantage of Omicron in England using S-Gene Target Status as a Proxy. (2021) Abbott, Sam, Sherratt, Katharine, Funk, Sebastian
  • epiforecasts/covid: Submission release. (2020) Abbott, Sam, Sherratt, Katharine, Funk, Sebastian, Hellewell, Joel
  • epiforecasts/NCoVUtils. (2020) Abbott, Sam, Sherratt, Katharine, Gibbs, Hamish, Finger, Flavio, Campbell, Paul, Hellewell, Joel, Barks, Patrick, Meakin, Sophie, Lee, Haze
  • Data for risk factor survey of active trachoma in the Oromia region of Ethiopia. (2023) Abdurahman, Oumer, Last, Anna, Macleod, David, Habtamu, Esmael, Versteeg, Bart, Greenland, Katie, Burton, Matthew J., Dumessa, Gebeyehu, Guye, Meseret, Nure, Rufia, Adugna, Dereje, Miecha, Hirpha description
  • Data from: The impact of long-term azithromycin on antibiotic resistance in HIV-associated chronic lung disease. (2021) Abotsi, Regina Esinam, Nicol, Mark P., McHugh, Grace, Simms, Victoria, Rehman, Andrea M., Barthus, Charmaine, Ngwira, Lucky G., Kwambana-Adams, Brenda, Heyderman, Robert S, Odland, Jon Ø, Ferrand, Rashida A, Dube, Felix S.
  • The de-identified final dataset for the study population. (2023) Abouyannis, Michael, Boga, Mwanamvua, Amadi, David, Ouma, Nelson, Nyaguara, Amek, Mturi, Neema, Berkley, James A., Adetifa, Ifedayo M. O., Casewell, Nicholas R., Lalloo, David G., Hamaluba, Mainga
  • MAISHA Study CRT01: Baseline and follow-up data. (2023) Abramsky, Tanya, Harvey, Sheila, Lees, Shelley, Kapiga, Saidi, Mtolela, Grace, Madaha, Flora, Hanson, Christian, Hashim, Ramadhan, Kapinga, Imma description
  • MAISHA Study CRT02: Baseline and follow-up data. (2023) Abramsky, Tanya, Harvey, Sheila, Lees, Shelley, Kapiga, Saidi, Mtolela, Grace, Madaha, Flora, Hanson, Christian, Hashim, Ramadhan, Kapinga, Imma description
  • Replication Data for: Temporal trends of SARS-CoV-2 seroprevalence in transfusion blood donors during the first wave of the COVID-19 epidemic in Kenya. (2021) Adetifa, Ifedayo M. O., Uyoga, Sophie, Gitonga, John N., Mugo, Daisy, Otiende, Mark, Nyagwange, James, Karanja, Henry K., Tuju, James, Wanjiku, Perpetual, Aman, Rashid, Mwangangi, Mercy, Amoth, Patrick, Kasera, Kadondi, Ng’ang’a, Wangari, Rombo, Charles, Yegon, Christine, Kithi, Khamisi, Odhiambo, Elizabeth, Rotich, Thomas, Orgut, Irene, Kihara, Sammy, Bottomley, Christian, Kagucia, Eunice W., Gallagher, Katherine E., Etyang, Anthony, Voller, Shirine, Lambe, Teresa, Wright, Daniel, Barasa, Edwine, Tsofa, Benjamin, Bejon, Philip, Ochola-Oyier, Lynette I., Agweyu, Ambrose, Scott, J. Anthony G., Warimwe, George M.
  • SARS-CoV-2 variants-associated outbreaks of COVID-19 in a tertiary institution, North-Central Nigeria: Implications for epidemic control. S1 Data. (2023) Adeyemi, Oluwapelumi Olufemi, Ndodo, Nnaemeka Darlington, Sulaiman, Mariam Kehinde, Ayansola, Oyeronke Temidayo, Buhari, Oluwabunmi Idera Nimat, Akanbi, Olusola Anuoluwapo, Bolarinwa, Oladimeji Akeem, Chukwu, Chimaobi, Joel, Ireoluwa Yinka, Omoare, Adesuyi Ayodeji, Wahab, Kolawole Wasiu, Obiekea, Celestina, Buhari, Mikhail Olayinka, Ahumibe, Anthony, Kolawole, Caroline Folasade, Okoi, Catherine, Omotesho, Olumuyiwa Babagbemi, Mba, Nwando, Adeniyi, Oluwafemi, Babatunde, Olajumoke, Akintunde, Nathaniel, Ayinla, Ganiu, Akande, Oluwatosin Wuraola, Odunola, Rasheed Adekeye, Saka, Mohammed Jimoh, Musa, Omotosho Ibrahim, Durotoye, Idayat Adenike, Ihekweazu, Chikwe, Adetifa, Ifedayo Morayo, Fadeyi, Abayomi
  • MBIRA - Mortality from Bacterial Infections Resistant to Antibiotics study - underlying data. (2023) Aiken, Alex, Rehman, Andrea M. grid_on
  • Supplementary Material: Climate-sensitive disease outbreaks in the aftermath of extreme climatic events: a scoping review. (2022) Alcayna, Tilly, Fletcher, Isabel, Gibb, Rory, Tremblay, Léo, Funk, Sebastian, Rao, Bhargavi, Lowe, Rachel
  • Dataset: Seasonality and immunity to laboratory-confirmed seasonal coronaviruses (HCoV-NL63, HCoV-OC43, and HCoV-229E): results from the Flu Watch cohort study. (2020) Aldridge, Robert W., Lewer, Dan, Beale, Sarah, Johnson, Anne M., Zambon, Maria, Hayward, Andrew C., Fragaszy, Ellen
  • Data for: "Estimating force of infection from serologic surveys with imperfect tests". (2021) Alexander, Neal, Carabali, Mabel, Lim, Jacqueline K.
  • Research priorities in maternal and neonatal health in Africa: results using the Child Health and Nutrition Research Initiative method involving over 900 experts across the continent. (2021) Alobo, Moses, Mgone, Charles, Wesonga, Colette Adhiambo, Lawn, Joy E., Ezeaka, Chinyere, Okong, Pius, Temmerman, Marleen, Molineux, Elizabeth, Malata, Address, Wazny, Kerri, Kariuki, Thomas
  • Primary macrophages and J774 cells respond differently to infection with Mycobacterium tuberculosis. (2017) Andreu, Nuria, Phelan, Jody, de Sessions, Paola F, Cliff, Jackie M., Clark, Taane, Hibberd, Martin
  • Ecological Study of HIV Infection and Hypertension in Sub-Saharan Africa: Is There a Double Burden of Disease? (2016) Angkurawaranon, C., Nitsch, Dorothea, Larke, Natasha, Rehman, Andrea M., Smeeth, Liam, Addo, Juliet
  • Genome-scale comparison of expanded gene families in Plasmodium ovale wallikeri and Plasmodium ovale curtisi with Plasmodium malariae and with other Plasmodium species. (2016) Ansari, Hifzur Rahman, Templeton, Thomas J., Subudhi, Amit Kumar, Ramaprasad, Abhinay, Tang, Jianxia, Lu, Feng, Naeem, Raeece, Hashish, Yasmeen, Oguike, Mary C., Benavente, Ernest Diez, Clark, Taane G., Sutherland, Colin J., Barnwell, John W., Culleton, Richard, Cao, Jun, Pain, Arnab
  • The management of microbial keratitis within Uganda’s primary health system: a situational analysis. (2019) Arunga, Simon
  • Dengue virus type 4 isolate DET-P-0428-1 polyprotein (POLY) gene, complete cds; and sfRNA2 lncRNA gene, partial sequence. (2023) Ashall, James, Shah, Sonal, Biggs, Joseph R, Chang, Jui-Ning R, Jafari, Yalda, Brady, Oliver J., Mai, Huynh Kim, Lien, Le Thuy, Do Thai, Hung, Nguyen, Hien Anh Thi, Anh, Dang Duc, Iwasaki, Chihiro, Kitamura, Noriko, Van Loock, Marnix, Herrera-Taracena, Guillermo, Rasschaert, Freya, Van Wesenbeeck, Liesbeth, Yoshida, Lay-Myint, Hafalla, Julius Clemence R, Hue, Stephane, Hibberd, Martin L.
  • Dengue virus type I isolate DEN-P-1098-1 polyprotein (POLY) gene, partial cds. (2023) Ashall, James, Shah, Sonal, Biggs, Joseph R, Chang, Jui-Ning R, Jafari, Yalda, Brady, Oliver J., Mai, Huynh Kim, Lien, Le Thuy, Do Thai, Hung, Nguyen, Hien Anh Thi, Anh, Dang Duc, Iwasaki, Chihiro, Kitamura, Noriko, Van Loock, Marnix, Herrera-Taracena, Guillermo, Rasschaert, Freya, Van Wesenbeeck, Liesbeth, Yoshida, Lay-Myint, Hafalla, Julius Clemence R, Hue, Stephane, Hibberd, Martin L.
  • Replication Data for: Seroprevalence of anti–SARS-CoV-2 antibodies in women attending antenatal care in eastern Ethiopia. (2021) Assefa, Nega, Demissie, Lemma, Teklemarriam, Zelalem, Oundo, Joseph O., Madrid, Lola, Dessie, Yadeta, Scott, J. Anthony G.
  • Data from: Effective population size of malaria mosquitoes: large impact of vector control. (2013) Athrey, Giridhar, Hodges, Theresa K, Reddy, Michael R, Overgaard, Hans, Matias, Abrahan, Ridl, Frances C, Kleinschmidt, Immo, Caccone, Adalgisa, Slotman, Michel A
  • katiito/rsvvaccines_amr. (2022) Atkins, Katherine E., Hodgson, David
  • Data from: Seasonal influenza vaccination delivery through community pharmacists in England: evaluation of the London pilot. (2015) Atkins, Katherine, Vanhoek, Albert, Watson, Conall, Baguelin, Marc, Choga, Lethiwe, Patel, Anika, Raj, Thara, Jit, Mark, Griffiths, Ulla
  • mauzenbergs/polio_vdpv. (2021) Auzenbergs, Megan, Fountain, Holly, Macklin, Grace, Lyons, Hil, O'reilly, Kathleen M.
  • Use of motorised transport and pathways to childbirth care in health facilities: Evidence from the 2018 Nigeria Demographic and Health Survey. S1 Data. (2022) Avoka, Cephas Ke-on, Banke-Thomas, Aduragbemi, Beňová, Lenka, Radovich, Emma, Campbell, Oona M. R.
  • Hand hygiene intervention to optimise soil transmitted helminths infection control among primary school children: endline survey data from a cluster randomised trial. (2021) Ayieko, Philip, Hashim, Ramadhan, Grosskurth, Heiner, Kapiga, Saidi
  • covid19-forecast-hub-europe/covid19-forecast-hub-europe. (2022) actions-user, Sherratt, Katharine, Gruson, Hugo, Funk, Sebastian, Bracher, Johannes, BIOCOM-SC, Walraven, Robert, miraanto, h-veronika, Rodiah, Isti, gr3gr3, Kraus, David, hgurung-iem, epiforecasts-bot, Xu, Frost Tianjian, Heyder, Stefan, aniruddhadiga, Abbott, Sam, Sun, Tao, Mingio, Marco, Deuschel, Jannik, pmontman, janezz25, neele-itwm, Gibson, Graham, EpiGraph, Tarantino, Barbara, Karlen, Dean, Bhatia, Sangeeta, borjarv
    • B
  • The importance of fine-scale predictors of wild boar habitat use in an isolated population. (2022) Bacigalupo, Sonny, Ruby Chang, Yu-Mei, Dixon, Linda, Gubbins, Simon, Kucharski, Adam J., Drewe, Julian
  • Dataset of 1241 clients of RMNCH services during the COVID-19 outbreak in Lagos. (2021) Balogun, Mobolanle, Banke-Thomas, Aduragbemi, Sekoni, Adekemi, Boateng, Godfred O., Yesufu, Victoria, Wright, Ololade, Ubani, Osinachi, Abayomi, Akin, Afolabi, Bosede B., Ogunsola, Folasade
  • Screening tool to identify adolescents living with HIV in a community setting in Zimbabwe: A validation study. (2018) Bandason, Tsitsi, Dauya, Ethel, Dakshina, Subathira, McHugh, Grace, Chonzi, Prosper, Munyati, Shungu, Weiss, Helen A., Simms, Victoria, Kranzer, Katharina, Ferrand, Rashida Abbas
  • Intra-facility_maternal_deaths_Lagos_2018-2019. (2022) Banke-Thomas, Aduragbemi
  • A geospatial database of close to reality travel times to obstetric emergency care in 15 Nigerian conurbations. (2023) Banke-Thomas, Aduragbemi, Olubodun, Tope, Macharia, Peter M, Wong, Kerry LM, Gwacham-Anisiobi, Uchenna, Ogunyemi, Olakunmi, Benova, Lenka, Omolade Abejirinde, Ibukun-Oluwa, Makanga, Prestige Tatenda, Wang, Jia, Stanton, Charlotte, Sundararajan, Narayanan, Shah, Yash, Prasad, Gautam, Kansal, Mansi, Vispute, Swapnil, Shekel, Tomer, Afolabi, Bosede B
  • rosannaclairebarnard/covidm-mtd-Omi. (2022) Barnard, Rosanna C.
  • mrc-ide/covid-vaccine-impact-orderly. (2022) Barnsley, Gregory, Watson, Oliver J
  • Replication Data for: Congenital Microcephaly Unrelated to Flavivirus Exposure in Coastal Kenya. (2019) Barsosio, Hellen C., Gitonga, John N., Karanja, Henry Kibe, Nyamwaya, Doris K., Omuoyo, Donwilliams O., Kamau, Everlyn, Hamaluba, Mainga M., Nyiro, Joyce U., Kitsao, Barnes S., Nyaguara, Amek, Mwakio, Stella, Newton, Charles R., Sang, Rosemary, Wright, Daniel, Sanders, Eduard J., Seale, Anna C., Agoti, Charles N., Berkley, James A., Bejon, Philip, Warimwe, George M.
  • Unintended childbearing and family welfare in rural Malawi. (2016) Baschieri, Angela
  • Data from: Safety of single low-dose primaquine in glucose-6-phosphate dehydrogenase deficient falciparum-infected African males: two open-label, randomized, safety trials. (2018) Bastiaens, Guido J. H., Tiono, Alfred B., Okebe, Joseph, Pett, Helmi E., Coulibaly, Sam A., Gonçalves, Bronner P., Affara, Muna, Ouédraogo, Alphonse, Bougouma, Edith C., Sanou, Guillaume S., Nébié, Issa, Bradley, John, Lanke, Kjerstin H. W., Niemi, Mikko, Sirima, Sodiomon B., d’Alessandro, Umberto, Bousema, Teun, Drakeley, Chris
  • Household Transmission of Seasonal Coronavirus Infections: Results from the Flu Watch cohort study. (2020) Beale, Sarah, Lewer, Dan, Aldridge, Robert W., Johnson, Anne M., Zambon, Maria, Hayward, Andrew, Fragaszy, Ellen
  • Causes and outcomes of admission and investigation of tuberculosis in adults with advanced HIV in South African hospitals: data from the TB Fast Track trial. (2022) Beckwith, Peter, Tlali, Mpho, Charalambous, Salome, Churchyard, Gavin J., Fielding, Katherine, Hoffmann, Christopher J., Johnson, Suzanne, Wood, Natalie, Grant, Alison D., Karat, Aaron S. html
  • Parents’ and guardians’ views on the acceptability of a future COVID-19 vaccine for themselves and their children: cross-sectional survey and qualitative interview data. (2020) Bell, Sadie, Clarke, Richard, Mounier-Jack, Sandra, Paterson, Pauline
  • COVID-19 vaccination beliefs, attitudes, and behaviours among health and social care workers in the UK: Survey dataset. (2021) Bell, Sadie, Clarke, Richard, Mounier-Jack, Sandra, Paterson, Pauline, Ismail, Sharif, Ojo-Aromokudu, Oyinkansola description
  • PhyloTrack. (2015) Benavente, Ernest, Coll, Francesc, Furnham, Nick, Mcnerney, Ruth, Glynn, Judith, Campino, Susana, Pain, Arnab, Mohareb, Fady R, Clark, Taane
  • ISIDLSHTM/CoBeDOA. (2022) Benest, John
  • ISIDLSHTM/CoBeDOA_Data. (2022) Benest, John
  • ISIDLSHTM/Model_Size_Selection. (2022) Benest, John, Rhodes, Sophie, Evans, Thomas G., White, Richard G.
  • Qualitative data for: "The landscape of validation of global maternal and newborn health indicators through key informant interviews". (2019) Benova, Lenka, Moller, A, Moran, A. C.
  • Data_Sheet_1_Participatory Approach to Develop Evidence-Based Clinical Ethics Guidelines for the Care of COVID-19 Patients: A Mixed Method Study From Nepal. (2022) Bhattarai, Suraj, Adhikari, Anurag, Rayamajhee, Binod, Dhungana, Jaya, Singh, Minu, Koirala, Sarun, Shakya, Dhana Ratna
  • A summary of data collected from suspected dengue patients included in the study population from Indonesia, Vietnam and the Philippines. (2022) Biggs, Joseph R, Sy, Ava Kristy, Ashall, James, Santoso, Marsha S, Brady, Oliver J, Reyes, Mary Anne Joy, Quinones, Mary Ann, Jones-Warner, William, Tandoc, Amadou O, Sucaldito, Nemia L, Huynh, Kim Mai, Le, Thuy Lien, Hung, Do Thai, Nguyen, Hien Anh Thi, Dang, Duc Anh, Iwasaki, Chihiro, Kitamura, Noriko, Van Loock, Marnix, Herrera-Taracena, Guillermo, Menten, Joris, Rasschaert, Freya, Van Wesenbeeck, Liesbeth, Masyeni, Sri, Haryanto, Sotianingsih, Yohan, Benediktus, Cutiongco-de la Paz, Eva, Yoshida, Lay-Myint, Hue, Stephane, Capeding, Maria Rosario Z, Padilla, Carmencita D, Sasmono, R Tedjo, Hafalla, Julius Clemence R, Hibberd, Martin L
  • Demographic characteristics of the reporting study population at enrolment. (2022) Biggs, Joseph, Sy, Ava Kristy, Ashall, James, Santoso, Marsha S, Brady, Oliver J, Reyes, Mary Anne Joy, Quinones, Mary Ann, Jones-Warner, William, Tandoc, Amadou O, Sucaldito, Nemia L, Huynh, Kim Mai, Le, Thuy Lien, Hung, Do Thai, Nguyen, Hien Anh Thi, Dang, Duc Anh, Iwasaki, Chihiro, Kitamura, Noriko, Van Loock, Marnix, Herrera-Taracena, Guillermo, Menten, Joris, Rasschaert, Freya, Van Wesenbeeck, Liesbeth, Masyeni, Sri, Haryanto, Sotianingsih, Yohan, Benediktus, Cutiongco-de la Paz, Eva, Yoshida, Lay-Myint, Hue, Stephane, Capeding, Maria Rosario Z, Padilla, Carmencita D, Sasmono, R Tedjo, Hafalla, Julius Clemence R, Hibberd, Martin L
  • Sensitivity (95%CI) of NS1 RDTs in capturing DENV1-4 infections stratified by immune status among patients from Vietnam (N:1,217). (2022) Biggs, Joseph, Sy, Ava Kristy, Ashall, James, Santoso, Marsha S, Brady, Oliver J, Reyes, Mary Anne Joy, Quinones, Mary Ann, Jones-Warner, William, Tandoc, Amadou O, Sucaldito, Nemia L, Huynh, Kim Mai, Le, Thuy Lien, Hung, Do Thai, Nguyen, Hien Anh Thi, Dang, Duc Anh, Iwasaki, Chihiro, Kitamura, Noriko, Van Loock, Marnix, Herrera-Taracena, Guillermo, Menten, Joris, Rasschaert, Freya, Van Wesenbeeck, Liesbeth, Masyeni, Sri, Haryanto, Sotianingsih, Yohan, Benediktus, Cutiongco-de la Paz, Eva, Yoshida, Lay-Myint, Hue, Stephane, Capeding, Maria Rosario Z, Padilla, Carmencita D, Sasmono, R Tedjo, Hafalla, Julius Clemence R, Hibberd, Martin L
  • Archive of figure generating data. (2021) Blassel, Luc, Tostevin, Anna, Villabona-arenas, Christian Julián, Peeters, Martine, Hue, Stephane, Gascuel, Olivier
  • Global and regional prevalence of neural tube defects estimates in 2015: Data sources, methods and results. (2017) Blencowe, Hannah folder_zip
  • Vulnerable Newborn Measurement Collaboration. (2022) Blencowe, Hannah, Bradley, Ellen, Lawn, Joy E., Ohuma, Eric, Okwaraji, Yemi, Suarez Idueta, Lorena, Yargawa, Judith
  • National, regional, and worldwide estimates of stillbirth rates in 2015, with trends from 2000: a systematic analysis. (2015) Blencowe, Hannah, Cousens, Simon, Bianchi jassir, Fiorella, Say, Lale, Chou, Doris, Mathers, Colin, Hogan, Dan, Shiekh, Suhail, Qureshi, Zeshan, You, Danzhen, Lawn, Joy description
  • Supporting information for National, regional, and worldwide estimates of low birthweight rates in 2015, with trends from 2000: a systematic analysis. (2019) Blencowe, Hannah, Krasevec, Julia, de Onis, Mercedes, Black, Robert E., An, Xiaoyi, Stevens, Gretchen A., Borghi, Elaine, Hayashi, Chika, Estevez, Diana, Cegolon, Luca, Shiekh, Suhail, Ponce Hardy, Victoria, Lawn, Joy E., Cousens, Simon
  • ehr-lshtm/acute_kidney_injury_seasonality_ML. (2023) Bolt, Hikaru
  • Dataset for calcified NCC (Matapalo area villages). (2022) Bonnet, Gabrielle, Pizzitutti, Francesco, Gonzales-Gustavson, Eloy A., Gabriël, Sarah, Pan, William K., Garcia, Hector H., Bustos, Javier A., Vilchez, Percy, O’Neal, Seth E.
  • Dataset for epilepsy figures (Tumbes region). (2022) Bonnet, Gabrielle, Pizzitutti, Francesco, Gonzales-Gustavson, Eloy A., Gabriël, Sarah, Pan, William K., Garcia, Hector H., Bustos, Javier A., Vilchez, Percy, O’Neal, Seth E.
  • Evaluation of a pay for performance programme in Pwani region in Tanzania: A controlled before and after study, IMPACT. (2014) Borghi, Josephine, Mamdani, Masuma, Abdulla, Salim, Mayumana, Iddy, Mashasi, Irene, Binyaruka, Peter, Patouillard, Edith, Njau, Ikunda, Maestad, Ottar
  • Evaluation of a pay for performance programme in Pwani region in Tanzania: A controlled before and after study, PROCESS. (2014) Borghi, Josephine, Mamdani, Masuma, Abdulla, Salim, Mayumana, Iddy, Mashasi, Irene, Binyaruka, Peter, Patouillard, Edith, Njau, Ikunda, Maestad, Ottar
  • Data for "Human judgement forecasting of COVID-19 in the UK" by Bosse et. al (2023). (2023) Bosse, Nikos I., Abbott, Sam, Bracher, Johannes, Van leeuwen, Edwin, Cori, Anne, Funk, Sebastian
  • epiforecasts/covid.german.forecasts. (2022) Bosse, Nikos, Abbott, Sam, Funk, Sebastian
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  • Data for: "Boosting understanding of Lassa Fever virus epidemiology: field testing a novel assay to identify past Lassa Fever virus infection in blood and oral fluids of survivors and unexposed controls in Sierra Leone". (2020) Bower, Hilary, Akpogheneta, Onome, Kanneh, Zainab, Jusu, Brima, Kanneh, Lansana, Alhasan, Foday, Gbakie, Michael, Shieffelin, John description
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  • Nasopharyngeal bacterial load as a marker for rapid and easy diagnosis of invasive pneumococcal disease in children from Mozambique: Supporting data for the manuscript results. (2017) Brotons, Pedro, Bassat, Quique, Lanaspa, Miguel, Henares, Desiree, Perez-Arguello, Amaresh, Madrid, Lola, Balcells, Reyes, Acacio, Sozinho, Andres-Franch, Maria, Marcos, Maria Angeles, Valero-Rello, Ana, Muñoz-Almagro, Carmen
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  • Projecting the future incidence and burden of dengue in Southeast Asia. (2022) Colón-González, Felipe De Jesus, Gibb, Rory, Khan, Kamran, Watts, Alexander, Lowe, Rachel, Brady, Oliver J.
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  • Codelists for: "Effect of cardiovascular risk profile on severe outcomes of COVID-19 in England in 2020: a population-based cohort study". (2022) Davidson, Jennifer, Mcdonald, Helen, Strongman, Helen, Cadogan, Sharon, Banerjee, Ami, Smeeth, Liam, Warren-Gash, Charlotte
  • Codelists for: "The effect of influenza vaccine on acute cardiovascular events in people with varying cardiovascular risk: a self-controlled case-series study in England, 2008-2019". (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Banerjee, Ami, McDonald, Helen, Smeeth, Liam
  • Clinical codelist - CPRD Gold - solid organ transplant. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, McDonald, Helen description
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  • Clinical codelist - CPRD Gold - bone marrow or stem cell transplant. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Mcdonald, Helen description
  • Clinical codelist - CPRD Gold - chemotherapy and radiotherapy. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Mcdonald, Helen description
  • Therapy codelist - CPRD Gold - oral steroids. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Mcdonald, Helen description
  • Codelists for: "Factors associated with excess mortality in the first wave of COVID-19 pandemic in the UK: a cohort analysis using the Clinical Practice Research Databank". (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Mcdonald, Helen, Banerjee, Ami, Gayle, Alicia, Strongman, Helen, Evans, Dai, Clay, Simon, Forbes, Harriet, Mansfield, Kathryn E., Carreira, Helena, Bhaskaran, Krishnan, Bhate, Ketaki, Smeeth, Liam, Dedman, Daniel, Mathur, Rohini, Cadogan, Sharon, LSHTM EHR team
  • CSV-format data for: Increased mortality in community-tested cases of SARS-CoV-2 lineage B.1.1.7. (2021) Davies, Nicholas G.
  • cmmid/covid-age. (2020) Davies, Nicholas G.
  • nicholasdavies/amr-competition-diversity: Full release for publication. (2021) Davies, Nicholas G.
  • nicholasdavies/covidm-alpha. (2020) Davies, Nicholas G.
  • Analysis data and code for "Estimated transmissibility and impact of SARS-CoV-2 Variant of Concern 202012/01 in England". (2021) Davies, Nicholas G., Abbott, Sam, Barnard, Rosanna C., Jarvis, Christopher I., Kucharski, Adam J., Munday, James, Pearson, Carl A. B., Russell, Timothy W., Tully, Damien C., Washburne, Alex D., Wenseleers, Tom, Gimma, Amy, Waites, William, Wong, Kerry LM, van Zandvoort, Kevin, Silverman, Justin D., Diaz-Ordaz, Karla, Keogh, Ruth, Eggo, Rosalind M., Funk, Sebastian, Jit, Mark, Atkins, Katherine E., Edmunds, W. John
  • Analysis data and code for "Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England". (2021) Davies, Nicholas G., Abbott, Sam, Barnard, Rosanna C., Jarvis, Christopher I., Kucharski, Adam J., Munday, James, Pearson, Carl A. B., Russell, Timothy W., Tully, Damien C., Washburne, Alex D., Wenseleers, Tom, Gimma, Amy, Waites, William, Wong, Kerry LM, van Zandvoort, Kevin, Silverman, Justin D., Diaz-Ordaz, Karla, Keogh, Ruth, Eggo, Rosalind M., Funk, Sebastian, Jit, Mark, Atkins, Katherine E., Edmunds, W. John
  • Data from: Monogamy promotes altruistic sterility in insect societies. (2018) Davies, Nicholas G., Gardner, Andy
  • cmmid/covid-uk. (2020) Davies, Nicholas G, Kucharski, Adam J., Eggo, Rosalind M, Gimma, Amy, COVID-19 Working Group, Edmunds, W. John
  • Additional file 3 of Seasonal influenza vaccination in Kenya: an economic evaluation using dynamic transmission modelling. (2020) Dawa, Jeanette, Emukule, Gideon O., Barasa, Edwine, Widdowson, Marc Alain, Anzala, Omu, Van Leeuwen, Edwin, Baguelin, Marc, Chaves, Sandra S., Eggo, Rosalind M.
  • Additional file 1 of Seasonal influenza vaccination in Kenya: an economic evaluation using dynamic transmission modelling. (2020) Dawa, Jeanette, Emukule, Gideon O., Barasa, Edwine, Widdowson, Marc Alain, Anzala, Omu, Van leeuwen, Edwin, Baguelin, Marc, Chaves, Sandra S., Eggo, Rosalind M.
  • EN-BIRTH Data Collection Tools. (2018) Day, Louise Tina, Ruysen, Harriet, Gordeev, Vladimir S., Gore-langton, Georgia R., Boggs, Dorothy, Cousens, Simon, Moxon, Sarah G., Blencowe, Hannah, Baschieri, Angela, Rahman, Ahmed Ehsanur, Tahsina, Tazeen, Zaman, Sojib Bin, Hossain, Tanvir, Rahman, Qazi Sadeq-ur, Ameen, Shafiqul, Arifeen, Shams El, KC, Ashish, Shrestha, Shree Krishna, KC, Naresh P., Singh, Dela, Jha, Anjani Kumar, Jha, Bijay, Rana, Nisha, Basnet, Omkar, Joshi, Elisha, Paudel, Asmita, Shrestha, Parashu Ram, Jha, Deepak, Bastola, Ram Chandra, Ghimire, Jagat Jeevan, Paudel, Rajendra, Salim, Nahya, Shamba, Donat, Manji, Karim, Shabani, Josephine, Shirima, Kizito, Mkopi, Namala, Mrisho, Mwifadhi, Manzi, Fatuma, Jaribu, Jennie, Kija, Edward, Assenga, Evelyne, Kisenge, Rodrick, Pembe, Andrea, Hanson, Claudia, Mbaruku, Godfrey, Masanja, Honorati, Lawn, Joy E.
  • EN-BIRTH Data Collector Training - Handbook and Manual. (2018) Day, Louise Tina, Ruysen, Harriet, Gordeev, Vladimir S., Gore-langton, Georgia R., Boggs, Dorothy, Cousens, Simon, Moxon, Sarah G., Blencowe, Hannah, Baschieri, Angela, Rahman, Ahmed Ehsanur, Tahsina, Tazeen, Zaman, Sojib Bin, Hossain, Tanvir, Rahman, Qazi Sadeq-ur, Ameen, Shafiqul, Arifeen, Shams El, KC, Ashish, Shrestha, Shree Krishna, KC, Naresh P., Singh, Dela, Jha, Anjani Kumar, Jha, Bijay, Rana, Nisha, Basnet, Omkar, Joshi, Elisha, Paudel, Asmita, Shrestha, Parashu Ram, Jha, Deepak, Bastola, Ram Chandra, Ghimire, Jagat Jeevan, Paudel, Rajendra, Salim, Nahya, Shamba, Donat, Manji, Karim, Shabani, Josephine, Shirima, Kizito, Mkopi, Namala, Mrisho, Mwifadhi, Manzi, Fatuma, Jaribu, Jennie, Kija, Edward, Assenga, Evelyne, Kisenge, Rodrick, Pembe, Andrea, Hanson, Claudia, Mbaruku, Godfrey, Masanja, Honorati, Lawn, Joy E.
  • EN-BIRTH Data Collector Training – Training Module material. (2018) Day, Louise Tina, Ruysen, Harriet, Gordeev, Vladimir S., Gore-langton, Georgia R., Boggs, Dorothy, Cousens, Simon, Moxon, Sarah G., Blencowe, Hannah, Baschieri, Angela, Rahman, Ahmed Ehsanur, Tahsina, Tazeen, Zaman, Sojib Bin, Hossain, Tanvir, Rahman, Qazi Sadeq-ur, Ameen, Shafiqul, Arifeen, Shams El, KC, Ashish, Shrestha, Shree Krishna, KC, Naresh P., Singh, Dela, Jha, Anjani Kumar, Jha, Bijay, Rana, Nisha, Basnet, Omkar, Joshi, Elisha, Paudel, Asmita, Shrestha, Parashu Ram, Jha, Deepak, Bastola, Ram Chandra, Ghimire, Jagat Jeevan, Paudel, Rajendra, Salim, Nahya, Shamba, Donat, Manji, Karim, Shabani, Josephine, Shirima, Kizito, Mkopi, Namala, Mrisho, Mwifadhi, Manzi, Fatuma, Jaribu, Jennie, Kija, Edward, Assenga, Evelyne, Kisenge, Rodrick, Pembe, Andrea, Hanson, Claudia, Mbaruku, Godfrey, Masanja, Honorati, Lawn, Joy E.
  • Every Newborn Birth Indicator Research Tracking in Hospitals (EN-BIRTH) - Supplementary Materials. (2018) Day, Louise Tina, Ruysen, Harriet, Gordeev, Vladimir S., Gore-langton, Georgia R., Boggs, Dorothy, Cousens, Simon, Moxon, Sarah G., Blencowe, Hannah, Baschieri, Angela, Rahman, Ahmed Ehsanur, Tahsina, Tazeen, Zaman, Sojib Bin, Hossain, Tanvir, Rahman, Qazi Sadeq-ur, Ameen, Shafiqul, Arifeen, Shams El, KC, Ashish, Shrestha, Shree Krishna, KC, Naresh P., Singh, Dela, Jha, Anjani Kumar, Jha, Bijay, Rana, Nisha, Basnet, Omkar, Joshi, Elisha, Paudel, Asmita, Shrestha, Parashu Ram, Jha, Deepak, Bastola, Ram Chandra, Ghimire, Jagat Jeevan, Paudel, Rajendra, Salim, Nahya, Shamba, Donat, Manji, Karima, Shabani, Josephine, Shirima, Kizito, Mkopi, Namala, Mrisho, Mwifadhi, Manzi, Fatuma, Jaribu, Jennie, Kija, Edward, Assenga, Evelyne, Kisenge, Rodrick, Pembe, Andrea, Lawn, Joy E.
  • EN-BIRTH Data Collector Training - Supporting Annexes. (2018) Day, Louise Tina, Ruysen, Harriet, Gordeev, Vladimir S., Gore-langton, Georgia R., Boggs, Dorothy, Cousens, Simon, Moxon, Sarah, Blencowe, Hannah, Baschieri, Angela, Rahman, Ahmed Ehsanur, Tahsina, Tazeen, Zaman, Sojib Bin, Hossain, Tanvir, Rahman, Qazi Sadeq-ur, Ameen, Shafiqul, Arifeen, Shams El, KC, Ashish, Shrestha, Shree Krishna, KC, Naresh P., Singh, Dela, Jha, Anjani Kumar, Jha, Bijay, Rana, Nisha, Basnet, Omkar, Joshi, Elisha, Paudel, Asmita, Shrestha, Parashu Ram, Jha, Deepak, Bastola, Ram Chandra, Ghimire, Jagat Jeevan, Paudel, Rajendra, Salim, Nahya, Shamba, Donat, Manji, Karim, Shabani, Josephine, Shirima, Kizito, Mkopi, Namala, Mrisho, Mwifadhi, Manzi, Fatuma, Jaribu, Jennie, Kija, Edward, Assenga, Evelyne, Kisenge, Rodrick, Pembe, Andrea, Hanson, Claudia, Mbaruku, Godfrey, Masanja, Honorati, Lawn, Joy E.
  • Impact of vaccine passports on inclination to accept COVID-19 vaccinations in the UK. (2021) De figueiredo, Alex
  • Voluntary medical male circumcision uptake through soccer in Zimbabwe. (2019) DeCelles, Jeff, Kaufman, Zak, Bhauti, Kenneth, Hershow, Rebecca, Weiss, Helen, Chaibva, Cynthia, Moyo, Netsai, Braunschweig, Elise, Mantula, Fennie, Hatzold, Karin, Ross, David
  • Table 1 - Fueling Open Innovation for Malaria Transmission-Blocking Drugs: Hundreds of Molecules Targeting Early Parasite Mosquito Stages. (2019) Delves, Michael, Lafuente-Monasterio, M. Jose, Upton, Leanna, Ruecker, Andrea, Leroy, Didier, Gamo, Francisco-Javier, Sinden, Robert
  • Closing the immunisation gap in Ethiopia: a formative evaluation of 'The Fifth Child Project'. (2019) Demissie, Shiferaw Dechasa, Larson, Heidi, Chantler, Tracey, Kozuki, Naoko, Karafillakis, Emilie, Landegger, Justine, Kiapi, Lilian, Gebrekirstos, Petros, Mohammad, Sira, Wodajo, Samuel, Langston, Anne
  • Zambia Signal Functions study 2016 dataset. (2017) Dennis, Mardieh, Chelwa, Nachela, Owolabi, Onikepe, Cresswell, Jenny, Filippi, Veronique, Campbell, Oona folder_zip
  • Pathways to increased coverage: an analysis of time trends in contraceptive need and use among adolescents and young women in Kenya, Rwanda, Tanzania, and Uganda. (2017) Dennis, Mardieh, Radovich, Emma, Wong, Kerry, Owolabi, Onikepe, Cavallaro, Francesca, Mbizvo, Michael T., Binagwaho, Agnes, Waiswa, Peter, Lynch, Caroline, Benova, Lenka
  • Data for "Where are patients missed in the tuberculosis diagnostic cascade? A prospective cohort study in Ghana". (2019) Der, Joyce, Grint, Daniel, Narh, Clement T., Bonsu, Frank, Grant, Alison D. description
  • EXTENDED DATA [The conjunctival transcriptome in Ethiopians after trichiasis surgery: associations with the development of eyelid contour abnormalities and the effect of oral doxycycline treatment]. (2019) Derrick, Tamsyn
  • Is Beta Radiation Better than 5 Flurouracil as an Adjunct for Trabeculectomy Surgery When Combined with Cataract Surgery? A Randomised Controlled Trial. (2016) Dhalla, Kazim, Cousens, Simon, Bowman, Richard, Wood, Mark, Murdoch, Ian
  • EIDECDIA/China_influenza_seasonality. (2021) Diamond, Charlie, Gong, Hui, Sun, Fiona Yueqian, Liu, Yang, Quilty, Billy, Jit, Mark, Yang, Juan, Yu, Hongjie, Edmunds, W. John, Baguelin, Marc
  • Analysis of nuclear and organellar genomes of Plasmodium knowlesi in humans reveals ancient population structure and recent recombination among host-specific subpopulations. (2017) Diez Benavente, Ernest, Florez de Sessions, Paola, Moon, Robert W., Holder, Anthony A., Blackman, Michael J., Roper, Cally, Drakeley, Christopher J., Pain, Arnab, Sutherland, Colin J., Hibberd, Martin L., Campino, Susana, Clark, Taane G.
  • Additional file 1 of Characterising social contacts under COVID-19 control measures in Africa. (2022) Dobreva, Zlatina, Gimma, Amy, Rohan, Hana, Djoudalbaye, Benjamin, Tshangela, Akhona, Jarvis, Christopher I., Van Zandvoort, Kevin, Quaife, Matthew
  • Social contact data for Zambia and South Africa (CODA dataset). (2019) Dodd, Peter J, Looker, Clare, Plumb, Ian D., Bond, Virginia, Schaap, Ab, Shanaube, Kwame, Muyoyeta, Monde, Vynnycky, Emilia, Godfrey-faussett, Peter, Corbett, Elizabeth L., Beyers, Nulda, Ayles, Helen, White, Richard G.
  • Age- and Sex-Specific Social Contact Patterns and Incidence of Mycobacterium tuberculosis Infection: Interview Questionnaire. (2015) Dodd, Peter J, Looker, Clare, Plumb, Ian D., Bond, Virginia, Schaap, Ab, Shanaube, Kwame, Muyoyeta, Monde, Vynnycky, Emilia, Godfrey-faussett, Peter, Corbett, Elizabeth, Beyers, Nulda, Ayles, Helen, White, Richard
  • Replication Data for: Where Do Those Data Go? Reuse of screening results from clinical trials to estimate population prevalence of HBV infection in adults in Kilifi, Kenya. (2023) Downs, Louise O., Campbell, Cori, Abouyannis,, Michael, Otiende, Mark, Kapulu, Melissa, Obiero, Christine W., Hamaluba, Mainga, Ngetsa, Caroline, Andersson, Monique, Githinji, George, Warimwe, George, Baisley, Kathy, Scott, J Anthony G, Matthews, Philippa C., Etyang, Anthony
  • Data for: Young People’s use of Technology, and mental health and well-being. (2024) Doyle, Aoife description
  • Who are the male sexual partners of adolescent girls and young women? Comparative analysis of population data in three settings prior to DREAMS roll-out. (2018) Doyle, Aoife M., Floyd, Sian, Baisley, Kathy, Orindi, Benedict, Kwaro, Daniel, Mthiyane, Thandiwe N., Muuo, Sheru, Shahmanesh, Maryam, Ziraba, Abdhalah, Birdthistle, Isolde
  • Health service provision for and utilisation by young people (10-24 years) study conducted between September 2016 and August 2017 within the Africa Health Research Institute’s Population Intervention Programme Surveillance Area in northern KwaZulu-Natal. (2019) Doyle, Aoife M., Seeley, Janet
  • Productivity, family planning and reproductive health in Burkina Faso: PopDev qualitative data. (2015) Drabo, Seydou, Kagambega, Aline, Keita, Assita, Kontiebo, Sonia, Montel, Lisa, Filippi, Veronique, Soubeiga, André, Storeng, Katerini, Da, Sylvestre, Allahissem, Carine, Gali Gali, Idriss, Yaogo, Maurice folder_zip
  • yangclaraliu/armslist_scraping. (2021) Drake, Coleman, Hernandez, Ashley, Liu, Yang, Schwartz, Adam H., Sundaram, Maria
  • Malawi - Karonga HDSS INDEPTH Core Dataset 2003 - 2014 (Release 2016). (2016) Dube, Albert, Crampin, Amelia C.
  • Malawi - Karonga HDSS INDEPTH Core Dataset 2003-2015 (Release 2017). (2017) Dube, Albert, Crampin, Amelia C.
  • Discovery of a Streptococcus pneumoniae serotype 33F capsular polysaccharide locus that lacks wcjE and contains a wcyO pseudogene. (2018) de Lencastre, Herminia, Manna, Sam, Dunne, Eileen M., Ortika, Belinda D., Pell, Casey L., Kama, Mike, Russell, Fiona M., Mungun, Tuya, Mulholland, Kim. E, Hinds, Jason, Satzke, Catherine
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  • Computer code of the coinfection model. (2018) Eggo, Rosalind M. description
  • lshtm-public/rds-ui. (2023) Ekoriko, Promise
  • epidemery/subclinical_transmission. (2023) Emery, Jon C, Dodd, Peter J, Banu, Sayera, Frascella, Beatrice, Garden, Frances L, Horton, Katherine C, Hossain, Shahed, Law, Irwin, van Leth, Frank, Marks, Guy B, Nguyen, Hoa Binh, Nguyen, Hai Viet, Onozaki, Ikushi, Quelapio, Maria Imelda D, Richards, Alexandra S, Shaikh, Nabila, Tiemersma, Edine W, White, Richard G, Zaman, Khalequ, Cobelens, Frank, Houben, Rein MGJ
  • Trescovia/AHHME. (2023) Emes, Eve Tresco, Naylor, Nichola
  • akira-endo/reanalysis_Fukumoto2021: 'Not finding causal effect' is not 'finding no causal effect' of school closure on COVID-19. (2022) Endo, Akira
  • Extended data: Estimating the overdispersion in COVID-19 transmission using outbreak sizes outside China. (2020) Endo, Akira, Abbott, Sam, Kucharski, Adam J., Funk, Sebastian
  • akira-endo/COVID19_clustersize: Estimating the amount of superspreading using outbreak sizes of COVID-19 outside China. (2020) Endo, Akira, Abbott, Sam, Kucharski, Adam J., Funk, Sebastian
  • akira-endo/COVID19_backwardtracing. (2020) Endo, Akira, Kucharski, Adam J.
  • akira-endo/monkeypox_heavytail: Heavy-tailed sexual contact networks and the epidemiology of monkeypox outbreak in non-endemic regions. (2022) Endo, Akira, Murayama, Hiroaki, Abbott, Sam, Ratnayake, Ruwan, Pearson, Carl A. B., Edmunds, W. John, Fearon, Elizabeth, Funk, Sebastian
  • akira-endo/schooldynamics_FluMatsumoto14-15: Within and between classroom transmission patterns of seasonal influenza among primary school students in Matsumoto city, Japan. (2021) Endo, Akira, Uchida, Mitsuo, Hayashi, Naoki, Liu, Yang, Atkins, Katherine E., Kucharski, Adam J., Funk, Sebastian
  • akira-endo/schooldynamics_FluMatsumoto14-15: Simulating respiratory disease transmission within and between classrooms to assess pandemic management strategies at schools. (2022) Endo, Akira, Uchida, Mitsuo, Liu, Yang, Atkins, Katherine E., Kucharski, Adam J., Funk, Sebastian
  • Trust and Transparency in times of Crisis: Results from an Online Survey During the First Wave (April 2020) of the COVID-19 Epidemic in the UK. (2020) Enria, Luisa, Waterlow, Naomi, Rogers, Nina, Brindle, Hannah, Lal, Sham, Eggo, Rosalind M., Lees, Shelley, Roberts, Chrissy
  • Trust and Transparency in times of Crisis: Results from an Online Survey During the First Wave (April 2020) of the COVID-19 Epidemic in the UK - Qualitative Data. (2020) Enria, Luisa, Waterlow, Naomi, Rogers, Nina, Brindle, Hannah, Lal, Sham, Eggo, Rosalind M., Lees, Shelley, Roberts, Chrissy description
  • Trust and Transparency in times of Crisis: Results from an Online Survey During the First Wave (April 2020) of the COVID-19 Epidemic in the UK - Quantitative Data. (2021) Enria, Luisa, Waterlow, Naomi, Rogers, Nina, Brindle, Hannah, Lal, Sham, Eggo, Rosalind M., Lees, Shelley, Roberts, Chrissy
  • Replication Data for: Effect of Previous Exposure to Malaria on Blood Pressure in Kilifi, Kenya: A Mendelian Randomization Study. (2023) Etyang, Anthony O., Kapesa, Sailoki, Odipo, Emily, Bauni, Evasius, Kyobutungi, Catherine, Abdalla, Marwah, Mutner, Paul, Musani, Solomon K., Macharia, Alex, Williams, Thomas N., Cruickshank, J Kennedy, Smeeth, Liam, Scott, J Anthony G.
  • Analysis of changes in worldwide routine immunisation coverage in 2020. (2021) Evans, Bethany, Jombart, Thibaut
  • Impact of baseline cases of cough and fever on UK COVID-19 diagnostic testing rates: estimates from the Bug Watch community cohort study - Supplementary material, code and data. (2021) Eyre, Max T., Burns, Rachel, Kirkby, Victoria, Smith, Catherine, Denaxas, Spiros, Nguyen, Vincent, Hayward, Andrew, Shallcross, Laura, Fragaszy, Ellen, Aldridge, Robert W.
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  • Global Retinoblastoma Presentation 2017 data, on behalf of the Global Retinoblastoma Study Group. (2020) Fabian, Ido Didi, Stacey, Andrew, Foster, Allen, Kivelä, Tero T., Munier, Francis, Cassoux, Nathalie, Bowman, Richard
  • Draft search strategies for: "Novel strategies and approaches for testing populations at risk for sexually transmitted infections: A systematic review protocol". (2018) Falconer, Jane, Parajuli, Arun description
  • Adjunctive host-directed therapies for pulmonary tuberculosis: data from a prospective, open-label, phase 2, randomised controlled trial. (2021) Fielding, Katherine folder_zip
  • Data set for describing resistance and identifying risk factors for resistance to Mycobacterium tuberculosis, among highly TB exposed gold miners in South Africa. (2021) Fielding, Katherine description
  • Data set for the comparison of the performance of QuantiFERON-TB Gold Plus with QuantiFERON-T Gold in-tube among highly TB exposed gold miners in South Africa. (2020) Fielding, Katherine description
  • TB Fast Track dataset. (2019) Fielding, Katherine folder_zip
  • Effectiveness of electronic reminders to improve medication adherence in tuberculosis patients: a cluster-randomised trial. (2013) Fielding, Katherine, Lewis, James, Jiang, Shiwen
  • The effects of obstetric complications and their costs on the long-term economic and social well being of women and their families. (2016) Filippi, Veronique
  • Productivity, family planning and reproductive health in Burkina Faso 2013-2014. (2019) Filippi, Veronique, Cresswell, Jenny, Yaogo, M, Ganaba, R, Powell-jackson, Timothy, Soubeiga, A, Drabo, S, Storeng, Katerini, Ilboudo, P, Ouedraogo, D, Some, H
  • EmilieFinch/covid-reinfection. (2022) Finch, Emilie, Kucharski, Adam J.
  • Real-time analysis of the diphtheria outbreak in forcibly displaced Myanmar nationals in Bangladesh. (2019) Finger, Flavio, Funk, Sebastian, White, Kate, Siddiqui, M. Ruby, Edmunds, W. John, Kucharski, Adam J.
  • Mobile phone data highlights the role of mass gatherings in the spreading of cholera outbreaks. (2016) Finger, Flavio, Genolet, Tina, Mari, Lorenzo, de Magny, Guillaume Constantin, Manga, Noël Magloire, Rinaldo, Andrea, Bertuzzo, Enrico
  • Dataset and R code for article "Topical emollient therapy with sunflower seed oil alters the skin microbiota of young children with severe acute malnutrition in Bangladesh: a randomised, controlled study". (2021) Fischer, Natalie, Darmstadt, Gary L, Shahunja, KM, Crowther, Jonathan M, Kendall, Lindsay, Gibson, Rachel A, Ahmed, Tahmeed, Relman, David A
  • High-throughput low-cost nl-qPCR for enteropathogen detection: A proof-of-concept among hospitalized patients in Bangladesh. S1 Dataset. (2021) Flaherty, Katelyn E, Grembi, Jessica A, Ramachandran, Vasavi V, Haque, Farhana, Khatun, Selina, Rahman, Mahmudu, Maples, Stace, Becker, Torben K, Spormann, Alfred M, Schoolnik, Gary K, Hryckowian, Andrew J, Nelson, Eric J
  • Denvaxia-in-Phillippines. (2019) Flasche, Stefan
  • StefanFlasche/Pneumo_Trans_Inf. (2020) Flasche, Stefan
  • Aggregate data for "Towards 90-90: Findings after two years of the HPTN 071 (PopART) cluster-randomized trial of a universal testing-and-treatment intervention in Zambia". (2018) Floyd, Sian, Ayles, Helen, Schaap, Albertus, Shanaube, Kwame, MacLeod, David, Phiri, Mwelwa, Griffith, Sam, Bock, Peter, Beyers, Nulda, Fidler, Sarah, Hayes, Richard
  • Dataset for: "Community based distribution of oral HIV self-testing kits in Zambia: a cluster-randomised trial nested in four HPTN 071 (PopART) intervention communities". (2018) Floyd, Sian, Schaap, Ab, Hensen, Bernadette, Mulubwa, Chama html
  • Dataset for: "The impact of community-based, peer-led sexual and reproductive health services on knowledge of HIV-status among adolescents and young people aged 15-24 in Lusaka, Zambia: the Yathu Yathu cluster randomized trial". (2023) Floyd, Sian, Schaap, Albertus html
  • ASCENT-Ethiopia health economics. (2024) Foster, Nicola
  • XPHACTOR cross-sectional patient cost dataset. (2018) Foster, Nicola, Hanifa, Yasmeen, Pillai, Natasha, Roycent, Tumbare, Fielding, Katherine, Vassall, Anna, Grant, Alison D.
  • Viet Nam tuberculosis prevalence survey: equity analysis code. (2022) Foster, Nicola, Nguyen, Hai V, Nguyen, Nhung V, Nguyen, Hoa B, Cobelens, Frank, Tiemersma, Edine W, Quaife, Matthew, Houben, Rein description
  • iGugu Main Study Data PLOS Medicine. (2017) Francis, Suzanna C
  • Data for: "Immune activation in the female genital tract: Expression profiles of soluble proteins in women at high risk for HIV infection". (2015) Francis, Suzanna C, Hou, Yanwen, Baisley, Kathy, Van de wijgert, Janneke, Watson-Jones, Deborah, Ao, Trong T, Herrera, Carolina, Maganja, Kaballa, Andreasen, Aura, Coulton, Gary R, Hayes, Richard J, Shattock, Robin J description
  • Wasting prevention CHNRI dataset. (2020) Frison, Severine
  • hfu915/dynamice_mrmaps. (2023) Fu, Han
  • lshtm-vimc/dynamice. (2021) Fu, Han, Abbas, Kaja M.
  • Social contact data for Taiwan. (2022) Fu, Yang-Chih, Wang, Da-Wei, Chuang, Jen-Hsiang, Fu, Han
  • Consolidated results of dogs in the 2018 and 2019 studies. (2021) Fujisawa, Kyoko, Silcott-Niles, Charlotte, Simonson, Poppy, Lamattina, Daniela, Humeres, Cristian A., Bhattacharyya, Tapan, Mertens, Pascal, Thunissen, Caroline, O’Rourke, Victoria, Pańczuk, Magdalena, Whitworth, James A., Salomón, Oscar Daniel, Miles, Michael A.
  • R Code accompanying the manuscript "Assessing the performance of real-time epidemic forecasts: A case study of Ebola in the Western Area region of Sierra Leone, 2014-15". (2019) Funk, Sebastian
  • Socialmixr: Social Mixing Matrices for Infectious Disease Modelling. (2018) Funk, Sebastian
  • epiforecasts/ons_severity_estimates. (2022) Funk, Sebastian
  • sbfnk/epimixr. (2019) Funk, Sebastian
  • sbfnk/rbi.helpers. (2020) Funk, Sebastian, Finger, Flavio
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  • Additional file 1 of Identifying individual, household and environmental risk factors for malaria infection on Bioko Island to inform interventions. (2023) García, Guillermo A., Janko, Mark, Hergott, Dianna E. B., Donfack, Olivier T., Smith, Jordan M., Mba Eyono, Jeremías Nzamío, DeBoer, Kylie R., Nguema Avue, Restituto Mba, Phiri, Wonder P., Aldrich, Edward M., Schwabe, Christopher, Stabler, Thomas C., Rivas, Matilde Riloha, Cameron, Ewan, Guerra, Carlos A., Cook, Jackie, Kleinschmidt, Immo, Bradley, John
  • S1 Data for: "Comparison of new and emerging SARS-CoV-2 variant transmissibility through active contact testing. A comparative cross-sectional household seroprevalence study". (2023) Gaskell, Katherine M., El kheir, Natalie, Mirfendesky, Mariyam, Rampling, Tommy, Marks, Michael, Houlihan, Catherine F., Lemonge, Norbert, Bristowe, Hannah, Aslam, Suhail, Kyprianou, Demetra, Nastouli, Eleni, Goldblatt, David, Fielding, Katherine, Moore, David A. J.
  • fionagi/GASImpactModel. (2023) Giannini, Fiona, Abbas, Kaja
  • rorygibb/dengue_vietnam_ms: v1.0.0: Code base for Nature Communications MS. (2023) Gibb, Rory
  • rorygibb/pathogen_discovery: Viral discovery Biology Letters code. (2021) Gibb, Rory, Mollentze, Nardus
  • cmmid/uk_movement_communities_covid. (2021) Gibbs, Hamish
  • hamishgibbs/ghana_cdr_aggregation. (2023) Gibbs, Hamish
  • hamishgibbs/ghana_rt_npi_mobility. (2021) Gibbs, Hamish
  • RtD3. (2020) Gibbs, Hamish, Abbott, Sam, Funk, Sebastian
  • UK Colocation Dashboard. (2020) Gibbs, Hamish, CMMID nCov Working Group, Eggo, Rosalind M., Grundy, Chris, Kucharski, Adam J.
  • uk_tier_data. (2021) Gibbs, Hamish, Jarvis, Christopher I., Eggo, Rosalind M.
  • Population disruption: estimating changes in population distribution in the UK during the COVID-19 pandemic - Estimates for Local Authority Districts. (2021) Gibbs, Hamish, Waterlow, Naomi R., Cheshire, James, Danon, Leon, Liu, Yang, Grundy, Chris, Kucharski, Adam J., Eggo, Rosalind M.
  • hamishgibbs/facebook_population_2020_2021. (2022) Gibbs, Hamish, Waterlow, Naomi R., Cheshire, James, Danon, Leon, Liu, Yang, Grundy, Chris, Kucharski, Adam J., Eggo, Rosalind M.
  • 99% credible set SNPs for leprosy association at chromosome 10q24. (2022) Gilchrist, James J., Auckland, Kathryn, Parks, Tom, Mentzer, Alexander J., Goldblatt, Lily, Naranbhai, Vivek, Band, Gavin, Rockett, Kirk A., Toure, Ousmane B., Konate, Salimata, Sissoko, Sibiri, Djimdé, Abdoulaye A., Thera, Mahamadou A., Doumbo, Ogobara K., Sow, Samba, Floyd, Sian, Pönnighaus, Jörg M., Warndorff, David K., Crampin, Amelia C., Fine, Paul E. M., Fairfax, Benjamin P., Hill, Adrian V. S.
  • Analysis of pleiotropy at the leprosy association at chromosome 10q24. (2022) Gilchrist, James J., Auckland, Kathryn, Parks, Tom, Mentzer, Alexander J., Goldblatt, Lily, Naranbhai, Vivek, Band, Gavin, Rockett, Kirk A., Toure, Ousmane B., Konate, Salimata, Sissoko, Sibiri, Djimdé, Abdoulaye A., Thera, Mahamadou A., Doumbo, Ogobara K., Sow, Samba, Floyd, Sian, Pönnighaus, Jörg M., Warndorff, David K., Crampin, Amelia C., Fine, Paul E. M., Fairfax, Benjamin P., Hill, Adrian V. S.
  • Association statistics for imputed classical HLA alleles and leprosy risk in Malawi and Mali. (2022) Gilchrist, James J., Auckland, Kathryn, Parks, Tom, Mentzer, Alexander J., Goldblatt, Lily, Naranbhai, Vivek, Band, Gavin, Rockett, Kirk A., Toure, Ousmane B., Konate, Salimata, Sissoko, Sibiri, Djimdé, Abdoulaye A., Thera, Mahamadou A., Doumbo, Ogobara K., Sow, Samba, Floyd, Sian, Pönnighaus, Jörg M., Warndorff, David K., Crampin, Amelia C., Fine, Paul E. M., Fairfax, Benjamin P., Hill, Adrian V. S.
  • Chromatin state at chromosome 10q24. (2022) Gilchrist, James J., Auckland, Kathryn, Parks, Tom, Mentzer, Alexander J., Goldblatt, Lily, Naranbhai, Vivek, Band, Gavin, Rockett, Kirk A., Toure, Ousmane B., Konate, Salimata, Sissoko, Sibiri, Djimdé, Abdoulaye A., Thera, Mahamadou A., Doumbo, Ogobara K., Sow, Samba, Floyd, Sian, Pönnighaus, Jörg M., Warndorff, David K., Crampin, Amelia C., Fine, Paul E. M., Fairfax, Benjamin P., Hill, Adrian V. S.
  • Genome-wide association study of leprosy in Malawi and Mali. S2 Table. (2022) Gilchrist, James J., Auckland, Kathryn, Parks, Tom, Mentzer, Alexander J., Goldblatt, Lily, Naranbhai, Vivek, Band, Gavin, Rockett, Kirk A., Toure, Ousmane B., Konate, Salimata, Sissoko, Sibiri, Djimdé, Abdoulaye A., Thera, Mahamadou A., Doumbo, Ogobara K., Sow, Samba, Floyd, Sian, Pönnighaus, Jörg M., Warndorff, David K., Crampin, Amelia C., Fine, Paul E. M., Fairfax, Benjamin P., Hill, Adrian V. S.
  • Leprosy association statistics for suggestive associations in Malawi. S1 Table. (2022) Gilchrist, James J., Auckland, Kathryn, Parks, Tom, Mentzer, Alexander J., Goldblatt, Lily, Naranbhai, Vivek, Band, Gavin, Rockett, Kirk A., Toure, Ousmane B., Konate, Salimata, Sissoko, Sibiri, Djimdé, Abdoulaye A., Thera, Mahamadou A., Doumbo, Ogobara K., Sow, Samba, Floyd, Sian, Pönnighaus, Jörg M., Warndorff, David K., Crampin, Amelia C., Fine, Paul E. M., Fairfax, Benjamin P., Hill, Adrian V. S.
  • Regulatory function at the chromosome 10q24 leprosy association. (2022) Gilchrist, James J., Auckland, Kathryn, Parks, Tom, Mentzer, Alexander J., Goldblatt, Lily, Naranbhai, Vivek, Band, Gavin, Rockett, Kirk A., Toure, Ousmane B., Konate, Salimata, Sissoko, Sibiri, Djimdé, Abdoulaye A., Thera, Mahamadou A., Doumbo, Ogobara K., Sow, Samba, Floyd, Sian, Pönnighaus, Jörg M., Warndorff, David K., Crampin, Amelia C., Fine, Paul E. M., Fairfax, Benjamin P., Hill, Adrian V. S.
  • Replication of previously-published leprosy associated non-HLA SNPs in Malawi and Mali. (2022) Gilchrist, James J., Auckland, Kathryn, Parks, Tom, Mentzer, Alexander J., Goldblatt, Lily, Naranbhai, Vivek, Band, Gavin, Rockett, Kirk A., Toure, Ousmane B., Konate, Salimata, Sissoko, Sibiri, Djimdé, Abdoulaye A., Thera, Mahamadou A., Doumbo, Ogobara K., Sow, Samba, Floyd, Sian, Pönnighaus, Jörg M., Warndorff, David K., Crampin, Amelia C., Fine, Paul E. M., Fairfax, Benjamin P., Hill, Adrian V. S.
  • Replication of previously-published leprosy associated non-HLA SNPs in Malawi and Mali stratified by multibacillary and paucibacillary disease. (2022) Gilchrist, James J., Auckland, Kathryn, Parks, Tom, Mentzer, Alexander J., Goldblatt, Lily, Naranbhai, Vivek, Band, Gavin, Rockett, Kirk A., Toure, Ousmane B., Konate, Salimata, Sissoko, Sibiri, Djimdé, Abdoulaye A., Thera, Mahamadou A., Doumbo, Ogobara K., Sow, Samba, Floyd, Sian, Pönnighaus, Jörg M., Warndorff, David K., Crampin, Amelia C., Fine, Paul E. M., Fairfax, Benjamin P., Hill, Adrian V. S.
  • SNP quality control summary in Malawi and Mali. (2022) Gilchrist, James J., Auckland, Kathryn, Parks, Tom, Mentzer, Alexander J., Goldblatt, Lily, Naranbhai, Vivek, Band, Gavin, Rockett, Kirk A., Toure, Ousmane B., Konate, Salimata, Sissoko, Sibiri, Djimdé, Abdoulaye A., Thera, Mahamadou A., Doumbo, Ogobara K., Sow, Samba, Floyd, Sian, Pönnighaus, Jörg M., Warndorff, David K., Crampin, Amelia C., Fine, Paul E. M., Fairfax, Benjamin P., Hill, Adrian V. S.
  • Sample quality control summary in Malawi and Mali. (2022) Gilchrist, James J., Auckland, Kathryn, Parks, Tom, Mentzer, Alexander J., Goldblatt, Lily, Naranbhai, Vivek, Band, Gavin, Rockett, Kirk A., Toure, Ousmane B., Konate, Salimata, Sissoko, Sibiri, Djimdé, Abdoulaye A., Thera, Mahamadou A., Doumbo, Ogobara K., Sow, Samba, Floyd, Sian, Pönnighaus, Jörg M., Warndorff, David K., Crampin, Amelia C., Fine, Paul E. M., Fairfax, Benjamin P., Hill, Adrian V. S.
  • Selection signatures at chromosome 10q24. (2022) Gilchrist, James J., Auckland, Kathryn, Parks, Tom, Mentzer, Alexander J., Goldblatt, Lily, Naranbhai, Vivek, Band, Gavin, Rockett, Kirk A., Toure, Ousmane B., Konate, Salimata, Sissoko, Sibiri, Djimdé, Abdoulaye A., Thera, Mahamadou A., Doumbo, Ogobara K., Sow, Samba, Floyd, Sian, Pönnighaus, Jörg M., Warndorff, David K., Crampin, Amelia C., Fine, Paul E. M., Fairfax, Benjamin P., Hill, Adrian V. S.
  • Study populations and leprosy association statistics at rs2015583 in the Chinese replication analysis. (2022) Gilchrist, James J., Auckland, Kathryn, Parks, Tom, Mentzer, Alexander J., Goldblatt, Lily, Naranbhai, Vivek, Band, Gavin, Rockett, Kirk A., Toure, Ousmane B., Konate, Salimata, Sissoko, Sibiri, Djimdé, Abdoulaye A., Thera, Mahamadou A., Doumbo, Ogobara K., Sow, Samba, Floyd, Sian, Pönnighaus, Jörg M., Warndorff, David K., Crampin, Amelia C., Fine, Paul E. M., Fairfax, Benjamin P., Hill, Adrian V. S.
  • amygimma/comix_uk_summary_analysis. (2021) Gimma, Amy
  • Mean contacts by age and date. (2022) Gimma, Amy, Munday, James D., Wong, Kerry L. M., Coletti, Pietro, Van Zandvoort, Kevin, Prem, Kiesha, Klepac, Petra, Rubin, G. James, Funk, Sebastian, Edmunds, W. John, Jarvis, Christopher I.
  • CoMix social contact data (Austria). (2021) Gimma, Amy, Wong, Kerry LM, Coletti, Pietro, Jarvis, Christopher I.
  • CoMix social contact data (Croatia). (2022) Gimma, Amy, Wong, Kerry LM, Coletti, Pietro, Jarvis, Christopher I.
  • CoMix social contact data (Finland). (2022) Gimma, Amy, Wong, Kerry LM, Coletti, Pietro, Jarvis, Christopher I.
  • CoMix social contact data (France). (2021) Gimma, Amy, Wong, Kerry LM, Coletti, Pietro, Jarvis, Christopher I.
  • CoMix social contact data (Hungary). (2022) Gimma, Amy, Wong, Kerry LM, Coletti, Pietro, Jarvis, Christopher I.
  • CoMix social contact data (Italy). (2021) Gimma, Amy, Wong, Kerry LM, Coletti, Pietro, Jarvis, Christopher I.
  • CoMix social contact data (Lithuania). (2022) Gimma, Amy, Wong, Kerry LM, Coletti, Pietro, Jarvis, Christopher I.
  • CoMix social contact data (Poland). (2021) Gimma, Amy, Wong, Kerry LM, Coletti, Pietro, Jarvis, Christopher I.
  • CoMix social contact data (Portugal). (2021) Gimma, Amy, Wong, Kerry LM, Coletti, Pietro, Jarvis, Christopher I.
  • CoMix social contact data (Slovakia). (2022) Gimma, Amy, Wong, Kerry LM, Coletti, Pietro, Jarvis, Christopher I.
  • CoMix social contact data (Spain). (2021) Gimma, Amy, Wong, Kerry LM, Coletti, Pietro, Jarvis, Christopher I.
  • CoMix social contact data (Switzerland). (2022) Gimma, Amy, Wong, Kerry LM, Coletti, Pietro, Jarvis, Christopher I.
  • CoMix social contact data (UK). (2021) Gimma, Amy, Wong, Kerry LM, Van Xandvoort, Kevin, Jarvis, Christopher I., Edmunds, W. John
  • CoMix social contact data (Denmark). (2021) Gimma, Amy, Wong, Kerry Lm, Coletti, Pietro, Jarvis, Christopher I.
  • CoMix social contact data (Estonia). (2022) Gimma, Amy, Wong, Kerry Lm, Coletti, Pietro, Jarvis, Christopher I.
  • CoMix social contact data (Greece). (2021) Gimma, Amy, Wong, Kerry Lm, Coletti, Pietro, Jarvis, Christopher I.
  • CoMix social contact data (Slovenia). (2021) Gimma, Amy, Wong, Kerry Lm, Coletti, Pietro, Jarvis, Christopher I.
  • Early morning urine collection to improve urinary lateral flow LAM assay sensitivity in hospitalised patients with HIV-TB co-infection. (2017) Gina, Phindile, Randall, Philippa J., Muchinga, Tapuwa E., Pooran, Anil, Meldau, Richard, Peter, Jonny G., Dheda, Keertan
  • Systematic analysis of infectious disease outcomes by age. (2020) Glynn, Judith grid_on
  • Dataset codebook for a 30-year population-based study examining the contribution of remote M.tuberculosis infection to tuberculosis. (2023) Glynn, Judith R. description
  • Asymptomatic infection and family contact patterns in households of Ebola Virus Disease survivors, Sierra Leone 2015. (2017) Glynn, Judith R., Bower, Hilary, Houlihan, Catherine, Oza, Shefali, Checchi, Francesco, Johnson, Sembia, Turay, Cecilia, Sesay, Daniel, Mansaray, Saidu H., Kamara, Osman, Kamara, Joshua A., Bangura, Mohamed S., Montesano, Carla, Dicks, Steve, Samuel, Dhan, Tedder, Richard, Sebba, Charles description
  • Data for: “BCG revaccination in Malawi: 30-year follow-up of a large, randomised, double-blind placebo-controlled trial”. (2021) Glynn, Judith R., Fielding, Katherine, Mzembe, Themba, Sichali, Lifted, Banda, Louis, Mclean, Estelle, Kanjala, Chifundo, Crampin, Amelia C., Ponnighaus, Jorg, Warndorff, David, Fine, Paul description
  • CLEAN study dataset. (2020) Gon, Giorgia grid_on
  • Data for "HANDS project - Hand-hygiene of Attendants for Newborn Deliveries and Survival". (2020) Gon, Giorgia description
  • Data for: "Estimation of country-level incidence of early-onset invasive Group B Streptococcus disease in infants using Bayesian methods". (2021) Goncalves, Bronner description
  • BronnerG/Hosp_Vacc_analysis: v1. (2023) Gonçalves, Bronner P.
  • Data from: Examining the human infectious reservoir for Plasmodium falciparum malaria in areas of differing transmission intensity. (2018) Gonçalves, Bronner P., Kapulu, Melissa C., Sawa, Patrick, Guelbéogo, Wamdaogo M., Tiono, Alfred B., Grignard, Lynn, Stone, Will J. R., Hellewell, Joel, Lanke, Kjerstin, Bastiaens, Guido J. H., Bradley, John, Nébié, Issa, Ngoi, Joyce M., Oriango, Robin, Mkabili, Dora, Nyaurah, Maureen, Midega, Janet, Wirth, Dyann F., Marsh, Kevin, Churcher, Thomas S., Bejon, Philip, Sirima, Sodiomon B., Drakeley, Chris, Bousema, Teun
  • Awareness and uptake of layered HIV prevention programming for young women: analysis of population-based surveys in three DREAMS settings in Kenya and South Africa. (2019) Gourlay, Annabelle, Birdthistle, Isolde, Mthiyane, Nondumiso Thandiwe, Orindi, Benedict O., Muuo, Sheru, Kwaro, Daniel, Shahmanesh, Maryam, Baisley, Kathy, Ziraba, Abdhalah, Floyd, Sian
  • grahams99/Enhanced_surveillance_questionnaire. (2023) Graham, Sophie
  • Incidence of tuberculosis infection among adolescents in rural KwaZulu-Natal, South Africa, 2017-2018. (2019) Grant, Alison D., Baisley, Kathy, Mzembe, Themba, Edwards, Anita
  • Qualitative and Quantitative Data for Tuberculosis Infection Prevention and Control in KwaZulu-Natal and Western Cape, South Africa, 2018-2021. (2022) Grant, Alison D., Kielmann, Karina
  • Evaluation of multi-assay algorithms for identifying individuals with recent HIV infection: HPTN 071 (PopART). Minimum dataset, seroconverters. (2021) Grant-McAuley, Wendy, Klock, Ethan, Laeyendecker, Oliver, Piwowar-Manning, Estelle, Wilson, Ethan, Clarke, William, Breaud, Autumn, Moore, Ayana, Ayles, Helen, Kosloff, Barry, Shanaube, Kwame, Bock, Peter, Mandla, Nomtha, van Deventer, Anneen, Fidler, Sarah, Donnell, Deborah, Hayes, Richard, Eshleman, Susan H.
  • Rekyt/funrar. (2022) Grenié, Matthias, Gruson, Hugo, Silge, Julia, Tucker, Caroline
  • fundiversity: Easy Computation of Functional Diversity Indices. (2022) Gruson, Hugo, Grenié, Matthias
  • Bisaloo/asymptor. (2022) Gruson, Hugo, actions-user
    • H
  • Diagnostic Accuracy of Lateral Flow Urine LAM Assay for TB Screening of Adults with Advanced Immunosuppression Attending Routine HIV Care in South Africa. (2016) Hanifa, Yasmeen, Fielding, Katherine, Chihota, Violet N., Adonis, Lungiswa, Charalambous, Salome, Karstaedt, Alan, McCarthy, Kerrigan, Nicol, Mark P., Ndlovu, Nontobeko T., Sahid, Faieza, Churchyard, Gavin, Grant, Alison D.
  • Data for: "The utility of repeat Xpert MTB/RIF testing to diagnose tuberculosis in HIV-positive adults with initial negative result". (2016) Hanifa, Yasmeen, Fielding, Katherine, Grant, Alison D., Churchyard, Gavin J. folder_zip
  • XPHACTOR Clinical Score dataset. (2016) Hanifa, Yasmeen, Fielding, Katherine, Grant, Alison D., Churchyard, Gavin J. folder_zip
  • The diagnostic accuracy of urine lipoarabinomannan test for tuberculosis screening in a South African correctional facility. (2015) Hanifa, Yasmeen, Telisinghe, Lilanganee, Fielding, Katherine L., Malden, Justin L., Churchyard, Gavin J., Grant, Alison D., Charalambous, Salome
  • Evaluation of a Smartphone Decision-Support Tool for Diarrheal Disease Management in a Resource-Limited Setting. (2017) Haque, Farhana, Ball, Robyn L, Khatun, Selina, Ahmed, Mujaddeed, Kache, Saraswati, Chisti, Mohammod Jobayer, Sarker, Shafiqul Alam, Maples, Stace D, Pieri, Dane, Korrapati, Teja Vardhan, Sarnquist, Clea, Federspiel, Nancy, Rahman, Muhammad Waliur, Andrews, Jason R, Rahman, Mahmudur, Nelson, Eric Jorge
  • Syndromic survey de-identified data in SPSS. (2019) Haque, Farhana, Rahman, Mahmudur, Banu, Nuzhat Nasreen, Sharif, Ahmad Raihan, Jubayer, Shamim, Shamsuzzaman, AKM, Alamgir, ASM, Erasmus, Jesse H., Guzman, Hilda, Forrester, Naomi, Luby, Stephen P., Gurley, Emily S.
  • De-identified clinical survey data in SPSS. (2019) Haque, Farhana, Rahman, Mahmudur, Banu, Nuzhat Nasreen, Sharif, Ahmad Raihan, Jubayer, Shamim, Shamsuzzaman, AKM, Alamgir, ASM, Erasmus, Jesse H, Guzman, Hilda, Forrester, Naomi, Luby, Stephen P, Gurley, Emily S
  • De-identified symptom duration data in SPSS. (2019) Haque, Farhana, Rahman, Mahmudur, Banu, Nuzhat Nasreen, Sharif, Ahmad Raihan, Jubayer, Shamim, Shamsuzzaman, AKM, Alamgir, ASM, Erasmus, Jesse H, Guzman, Hilda, Forrester, Naomi, Luby, Stephen P, Gurley, Emily S
  • lshtm-tbmg/natcomms-m72sa: Nat Comms - code. (2021) Harris, Rebecca C, Quaife, Matthew, Weerasuriya, Chathika Krishan, Gomez, Gabriela B, Sumner, Tom, Bozzani, Fiammetta, White, Richard G
  • Additional files for: "A cluster randomized controlled trial to assess the impact on intimate partner violence of a 10-session participatory gender training curriculum delivered to women taking part in a group-based microfinance loan scheme in Tanzania (MAISHA CRT01): study protocol". (2018) Harvey, Sheila, Lees, Shelley, Mshana, Gerry, Pilger, Daniel, Hansen, Christian, Kapiga, Saidi, Watts, Charlotte
  • A universal testing and treatment intervention to improve HIV control: One-year results from intervention communities in Zambia in the HPTN 071 (PopART) cluster-randomised trial. (2017) Hayes, Richard, Floyd, Sian, Schaap, Ab, Shanaube, Kwame, Bock, Peter, Sabapathy, Kalpana, Griffith, Sam, Donnell, Deborah, Piwowar-Manning, Estelle, El-Sadr, Wafaa, Beyers, Nulda, Ayles, Helen, Fidler, Sarah desktop_windows
  • cmmid/ringbp. (2020) Hellewell, Joel
  • Feasibility of controlling COVID-19 outbreaks by isolation of cases and contacts. (2020) Hellewell, Joel, Abbott, Sam, Gimma, Amy, Bosse, Nikos, Jarvis, Christopher, Russell, Timothy, Munday, James, Kucharski, Adam, Edmunds, W John, Funk, Sebastian, Eggo, Rosalind, Sun, Fiona, Flasche, Stefan, Quilty, Billy, Davies, Nicholas, Liu, Yang, Clifford, Samuel, Klepac, Petra, Jit, Mark, Diamond, Charlie, Gibbs, Hamish, Van Zandvoort, Kevin
  • timcdlucas/ringbp: Code as used in the paper "Engagement and adherence trade-offs for SARS-CoV-2 contact tracing". (2020) Hellewell, Joel, Lucas, Tim, Davis, Emma, Abbott, Sam, Gimma, Amy, Thompson, Robin
  • cmmid/pcr-profile. (2020) Hellewell, Joel, Russell, Timothy W., The SAFER Investigators and Field Study Team, The Crick COVID-19 Consortium, CMMID COVID-19 working group, Beale, Rupert, Kelly, Gavin, Houlihan, Catherine, Nastouli, Eleni, Kucharski, Adam J.
  • Community-based distribution of oral HIV self-testing kits: experimental evidence from Zambia. (2019) Hensen, Bernadette, Ayles, Helen, Mulubwa, Chama, Floyd, Sian, Schaap, Ab, Chiti, Bwalya, Phiri, Mwelwa, Mwenge, Lawrence, Simwinga, Musonda, Fidler, Sarah, Hayes, Richard, Bond, Virginia, Mwinga, Alwin
  • Cross sectional survey data for self-reported ever and recent (last 12 months) STI testing. (2024) Hensen, Bernadette, Phiri, Mwelwa M., Sigande, Lucheka, Schaap, Ab, Simuyaba, Melvin, Zulu-Phiri, Rosemary, Mwape, Louis, Floyd, Sian, Fidler, Sarah, Hayes, Richard, Simwinga, Musonda, Ayles, Helen description
  • DREAMS baseline study in females aged 15-24 years in rural KwaZulu Natal, South Africa, 2006-2015. (2018) Herbst, Kobus, Pillay, Deenan, Baisley, Kathy, Barnighausen, Till, Dlamini, Sphephelo
  • DREAMS baseline study in young men aged 20-29 years in rural KwaZulu Natal, South Africa, 2006-2015. (2018) Herbst, Kobus, Pillay, Deenan, Baisley, Kathy, Barnighausen, Till, Koole, Olivier
  • r-spatialecology/shar. (2021) Hesselbarth, Maximilian, actions-user, Sciaini, Marco, Hereñú, Darío, Gruson, Hugo, Etherington, Thomas
  • emmahodcroft/ncov_2021: Release for Geneva Manuscript. (2024) Hodcroft, Emma, Zuber, Moira, Harkins, Elias, Neher, Richard, Wagner, Cassia, Huddleston, John, Bedford, Trevor, Moncla, Louise H, Hadfield, James, fzhang12, Sibley, Thomas, Saleh, Ahmad, falnaji, Xueying, aniafijarczyk, Nezu, Tomoyuki, Müller, Nicola Felix, Gall, Astrid, Brito, Anderson, Villabona Arenas, Ch. Julian, Bell, Sidney, Kozyreva, Varvara, Eren, Puller, Vadim, Han, Alvin X., irak, Rimaz, Hossein, Ghafari, Mahan, Sato, Takeshi, Lee, Hanbin
  • dchodge/rsvmabmat. (2024) Hodgson, David
  • dchodge/hero-study: Version submitted with WOR reviewers comments. (2022) Hodgson, David, Abbott, Sam
  • Acceptability and sensory qualities of fortified rice in Nepal. (2019) Homolka, Susanne, Zallet, Julia, Albert, Heidi, Witt, Anne-Kathrin, Kranzer, Katharina
  • Social Contact Data for Vietnam. (2018) Horby, Peter, Thai, Pham Quang, Hens, Niel, Yen, Nguyen Thi Thu, Mai, Le Quynh, Thoang, Dang Dinh, Linh, Nguyen Manh, Huong, Nguyen Thu, Alexander, Neal, Edmunds, W. John, Duong, Tran Nhu, Fox, Annette, Hien, Nguyen Tran
  • A Bayesian approach to understanding gender differences in tuberculosis disease burden. (2018) Horton, Katherine C, Sumner, Tom, Houben, Rein M G J, Corbett, Elizabeth L, White, Richard G
  • The Nairobi Early Childcare in Slums (NECS) Study. (2020) Hughes, Robert, Kitsao-Wekulo, Patricia, Bhopal, Sunil, Kimani-Murage, Elizabeth, Hill, Zelee, Kirkwood, Betty
    • I
  • Additional file 1 of Evaluating the effects of supplementing ward nurses on quality of newborn care in Kenyan neonatal units: protocol for a prospective workforce intervention study. (2022) Imam, Abdulazeez, Gathara, David, Aluvaala, Jalemba, Maina, Michuki, English, Mike
    • J
  • rbi: R Interface to LibBi. (2017) Jacob, Pierre E., Lee, Anthony, Murray, Lawrence, Funk, Sebastian
  • Escuelas saludables: reduciendo las enfermedades de diarrea y dengue en las escuelas rurales de Anapoima y La Mesa, Cundinamarca. (2013) Jaramillo, Juan Felipe, Olano, Víctor Alberto, Vargas, Sandra, Sarmiento-Senior, Diana, Overgaard, Hans J., Alexander, Neal
  • Circulation of respiratory viruses during the COVID-19 pandemic in the Gambia. (2022) Jarju, Sheikh, Senghore, Elina, Brotherton, Helen, Saidykhan, Alasana, Jallow, Samba, Krubally, Ebrima, Sinjanka, Edrisa, Ndene, Morris Ngor, Bajo, Fabakary, Sanyang, Musa M, Saidy, Binta, Bah, Alasana, Mohammed, Nuredin I, Forrest, Karen, Clarke, Ed, Dalessandro, Umberto, Sesay, Abdul Karim, Usuf, Effua, Cerami, Carla, Roca, Anna, Kampmann, Beate, De silva, Thushan
  • jarvisc1/comix_uk_covid_restrictions. (2021) Jarvis, Christopher
  • jarvisc1/2020-reporting. (2021) Jarvis, Christopher I., Jombart, Thibaut
  • Dataset for "Confirmation of cholera by rapid diagnostic test amongst patients admitted to the cholera treatment centre in Uvira, Democratic Republic of the Congo". (2018) Jeandron, Aurelie, Cumming, Oliver, Rumedeka, Baron Bashige, Saidi, Jaime Mufitini, Cousens, Simon
  • National Survey of Sexual Attitudes and Lifestyles, 2010-2012. (2015) Johnson, Anne
  • Additional file 1 of ‘Too old to test?’: A life course approach to HIV-related risk and self-testing among midlife-older adults in Malawi. (2021) Johnson, Cheryl, Kumwenda, Moses, Meghji, Jamilah, Choko, Augustine T., Phiri, Mackwellings, Hatzold, Karin, Baggaley, Rachel, Taegtmeyer, Miriam, Terris-Prestholt, Fern, Desmond, Nicola, Corbett, Elizabeth L.
  • Inferring COVID-19 cases from recent death. (2020) Jombart, Thibaut, Abbott, Sam, Gimma, Amy, Van zandvoort, Kevin, Jarvis, Christopher
  • Inferring COVID-19 cases from deaths of confirmed cases. (2020) Jombart, Thibaut, Abbott, Sam, Gimma, Amy, Zandvoort, Kevin, Clifford, Samuel, Jarvis, Christopher, Russell, Timothy, Funk, Sebastian, Gibbs, Hamish, Eggo, Rosalind M., Kucharski, Adam J., CMMID COVID-19 Working Group, Edmunds, W. John
  • outbreaker2: Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data. (2018) Jombart, Thibaut, Campbell, Finlay, Fitzjohn, Richard
  • thibautjombart/covid19_bed_occupancy: Second major release. (2020) Jombart, Thibaut, Clifford, Samuel, Pearson, Carl A. B. Pearson, Rees, Eleanor, Nightingale, Emily, Procter, Simon, Knight, Gwen
  • Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data. (2014) Jombart, Thibaut, Cori, Anne, Didelot, Xavier, Cauchemez, Simon, Fraser, Christophe, Ferguson, Neil
  • adegenet: Exploratory Analysis of Genetic and Genomic Data. (2020) Jombart, Thibaut, Kamvar, Zhian N., Collins, Caitlin, Luštrik, Roman, Beugin, Marie-Pauline, Knaus, Brian J, Solymos, Peter, Mikryukov, Vladimir, Schliep, Klaus, Maié, Tiago, Morkovsky, Libor, Ahmed, Ismail, Cori, Anne, Calboli, Federico, Ewing, RJ, Michaud, Frédéric, DeCamp, Rebecca, Courtiol, Alexandre
  • treespace: exploration of landscapes of phylogenetic trees. (2018) Jombart, Thibaut, Kendall, Michelle, Almagro-Garcia, Jacob, Colijn, Caroline
  • projections: Project Future Case Incidence. (2020) Jombart, Thibaut, Nouvellet, Pierre, Bhatia, Sangeeta, Kamvar, Zhian N., Taylor, Tim, Ghozzi, Stephane
  • trendbreaker 0.1.0: Detect Changes in Temporal Trends. (2020) Jombart, Thibaut, Schumacher, Dirk
  • epiverse-trace/blueprints: 0.0.2. (2022) Jombart, Thibaut, actions-user, Gruson, Hugo, Pavlich-Mariscal, Jaime
  • SungmokJung/Projection_Japan_COVID19 v1.0.0. (2021) Jung, Sung-mok, Endo, Akira, Kinoshita, Ryo, Nishiura, Hiroshi
  • SungmokJung/mpox_global: Initial release. (2023) Jung, Sung-mok, Miura, Fuminari, Endo, Akira, Murayama, Hiroaki
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  • Data for: PrEP preference among adolescent boys and young men in three sub-Saharan African countries. (2023) Kakande, Ayoub, Ssemata, Andrew Sentoogo, Muhumuza, Richard, Atujuna, Millicent, Abaasa, Andrew, Fox, Julie, Ndekezi, Denis, Tshabalala, Gugulethu, Nematadzira, Teacler, Hornschuh, Stefanie, Nomvuyo, Mangxilana, Ahmed, Nadia, Maluadzi, Mamakiri, Weiss, Helen, Seeley, Janet, Dietrich, Janan Janine, Stranix-Chibanda, Lynda, Webb, Emily, PrEPVacc Study Group, ITAPS team description
  • Effect of repeat BCG on all-cause mortality: a double-blind randomised placebe-controlled trial in Malawi. (2020) Kanjala, Chifundo, Glynn, Judith R., Fine, Paul
  • Blood pressure levels among children in rural Uganda: results from 1,913 children in a general population survey. (2021) Kansiime, Sheila description
  • Dataset for: Developing HIV risk prediction tools in four African settings. (2023) Kansiime, Sheila, Hansen, Christian, Hayes, Richard, Ruzagira, Eugene, PrEPVacc study team description
  • Autopsy Prevalence of Tuberculosis and Other Potentially Treatable Infections among Adults with Advanced HIV Enrolled in Out-Patient Care in South Africa: Lesedi Kamoso study data. (2016) Karat, Aaron S., Omar, Tanvier, von Gottberg, Anne, Tlali, Mpho, Chihota, Violet N., Churchyard, Gavin J., Fielding, Katherine L., Johnson, Suzanne, Martinson, Neil A., McCarthy, Kerrigan, Wolter, Nicole, Wong, Emily B., Charalambous, Salome, Grant, Alison D. description
  • Measuring mortality due to HIV-associated tuberculosis among adults in South Africa: comparing verbal autopsy, minimally-invasive autopsy, and research data. Data from the Lesedi Kamoso study. (2016) Karat, Aaron, Tlali, Mpho, Fielding, Katherine, Charalambous, Salome, Chihota, Violet N., Churchyard, Gavin J., Hanifa, Yasmeen, Johnson, Suzanne, McCarthy, Kerrigan, Martinson, Neil A., Omar, Tanvier, Kahn, Kathleen, Chandramohan, Daniel, Grant, Alison D. description
  • The Ecological Dynamics of Fecal Contamination and Salmonella Typhi and Salmonella Paratyphi A in Municipal Kathmandu Drinking Water. S2 Dataset. (2016) Karkey, Abhilasha, Jombart, Thibaut, Walker, Alan W., Thompson, Corinne N., Torres, Andres, Dongol, Sabina, Tran Vu Thieu, Nga, Pham Thanh, Duy, Tran Thi Ngoc, Dung, Voong Vinh, Phat, Singer, Andrew C., Parkhill, Julian, Thwaites, Guy, Basnyat, Buddha, Ferguson, Neil, Baker, Stephen
  • Supportive supervision of close-to-community providers of health care: Findings from action research conducted in two counties in Kenya. (2019) Karuga, Robinson Njoroge, Mireku, Maryline, Muturi, Nelly, McCollum, Rosalind, Vallieres, Frederique, Kumar, Meghan, Taegtmeyer, Miriam, Otiso, Lilian
  • Survey Questions for LMIC stakeholders. (2023) Karumbi, Jamlick, Gorst, Sarah, Gathara, David, Young, Bridget, Williamson, Paula
  • The economic burden incurred by families caring for a young child with developmental disability in Uganda: User costing questionnaire. (2023) Katumba, Kenneth, Tann, Cally J., Webb, Emily L., Tenywa, Patrick, Nampijja, Margaret, Seeley, Janet, Greco, Giulia
  • Data supporting "The economic burden incurred by families caring for a young child with developmental disability in Uganda". (2023) Katumba, Kenneth, Tann, Cally, Webb, Emily, Tenywa, Patrick, Nampijja, Margaret, Seeley, Janet, Greco, Giulia description
  • Physical Activity in Deprived Communities in London: Examining Individual and Neighbourhood-Level Factors. (2013) Kazembe, Lawrence, Watts, Paul, Phillips, Gemma, Petticrew, Mark, Hayes, Richard, Bottomley, Christian, Yu, Ge, Schmidt, Elena, Tobi, Patrick, Moore, Derek, Frostick, Caroline, Lock, Karen, Renton, Adrian description
  • Replication Data for: Crude childhood vaccination coverage in West Africa: trends and predictors of completeness. (2017) Kazungu, Jacob S., Adetifa, Ifedayo
  • NHIF-contracted outpatient facility choice data. (2024) Kazungu, Jacob, Nonvignon, Justice, Barasa, Edwine, Quaife, Matthew
  • Support files for: "Electronic data collection, management and analysis tools used for outbreak response in low- and middle-income countries: a systematic review and stakeholder survey". (2021) Keating, Patrick, Murray, Jillian, Schenkel, Karl, Merson, Laura, Seale, Anna
  • shk313/diagnostic-test-metaanalysis/CrAg. (2022) Keddie, Suzanne
  • shk313/Evaluating-sensitivity-and-specificity-from-LCM-a-simulation-study. (2023) Keddie, Suzanne H
  • Stan models for diagnostic tests accuracy simulation; Accompaniment for Journal Article. (2022) Keddie, Suzanne, Bärenbold, Oliver, Keogh, Ruth, Bradley, John
  • Data for: "From kitchen to classroom: Assessing the impact of cleaner burning biomass-fuelled cookstoves on primary school attendance in Karonga district, northern Malawi". (2018) Kelly, Christine, Dube, Albert, Mortimer, Kevin description
  • Antiretroviral therapy, high-risk human papillomavirus and cervical intraepithelial neoplasia: a systematic review and meta-analysis. (2017) Kelly, Helen, Weiss, Helen, Benavente Moreno, Yolanda, de Sanjose, Silvia, Mayaud, Philippe
  • Data for: Karachi adult tuberculosis prevalence and child Mycobacterium tuberculosis infection survey, 2018-2019. (2024) Khan, Palwasha Y. html
  • Additional file 1 of Clinical, metabolic, and immunological characterisation of adult Ugandan patients with new-onset diabetes and low vitamin D status. (2022) Kibirige, Davis, Sekitoleko, Isaac, Balungi, Priscilla, Kyosiimire-Lugemwa, Jacqueline, Lumu, William
  • Additional file 3 of Influence of testing modality on bioefficacy for the evaluation of Interceptor® G2 mosquito nets to combat malaria mosquitoes in Tanzania. (2022) Kibondo, Ummi Abdul, Odufuwa, Olukayode G., Ngonyani, Saphina H., Mpelepele, Ahmadi B., Matanilla, Issaya, Ngonyani, Hassan, Makungwa, Noel O., Mseka, Antony P., Swai, Kyeba, Ntabaliba, Watson, Stutz, Susanne, Austin, James W., Moore, Sarah Jane
  • vaccine-impact/vaccine_amr. (2023) Kim, Chaelin, Abbas, Kaja M., vaccine-impact
  • The impact of dual- versus single-dosing and fatty food co-administration on albendazole efficacy against hookworm among children in Mayuge district, Uganda: Results from a 2x2 factorial randomised controlled trial. S1 Data. (2023) Kim, Eun Seok, Adriko, Moses, Aidah, Wamboko, Oseku, Kabarangira Christine, Lokure, David, Sabapathy, Kalpana, Webb, Emily L.
  • skiniry/Trips-Viz. (2022) Kiniry, Stephen J, Judge, Ciara
  • ALPHA HIV Incidence and Mortality Data, Kisesa 1994-2016. (2022) Kisesa HIV Open Cohort study, ALPHA Network
  • skissler/haslemere. (2020) Kissler, Stephen M., Klepac, Petra, Tang, Maria, Conlan, Andrew J.K., Gog, Julia R.
  • Contacts in context: large-scale setting-specific social mixing matrices from the BBC Pandemic project. (2020) Klepac, Petra, Kucharski, Adam J, Conlan, Andrew JK, Kissler, Stephen, Tang, Maria, Fry, Hannah, Gog, Julia R
  • Code for "The relative fitness of drug resistant Mycobacterium tuberculosis: a modelling study of household transmission in Lima, Peru". (2018) Knight, Gwen
  • gwenknight/empiricprescribing. (2019) Knight, Gwen
  • gwenknight/hai_first_wave. (2021) Knight, Gwen
  • gwenknight/strain_growth. (2022) Knight, Gwen, Baede, Valérie O.
  • Follow up time from The relative fitness of drug-resistant Mycobacterium tuberculosis: a modelling study of household transmission in Peru. (2018) Knight, Gwenan M., Zimic, Mirko, Funk, Sebastian, Gilman, Robert H., Friedland, Jon S., Grandjean, Louis
  • aj-clements/Vivli-AMR-KG. (2023) Knight, Gwenan M, Waterlow, Naomi, Wildfire, Jacob, Clements, Alastair J
  • Source data for "Date of introduction and epidemiologic patterns of SARS-CoV-2 in Mogadishu, Somalia: estimates from transmission modelling of satellite-based excess mortality data in 2020". (2021) Koltai, Mihaly
  • mbkoltai/RSV-CEA-Kenya-South-Africa. (2023) Koltai, Mihaly
  • mbkoltai/covid_lmic_model: Model fitting excess mortality data in Mogadishu v1.0. (2021) Koltai, Mihaly
  • mbkoltai/RSV-resurgence-model. (2022) Koltai, Mihaly, Krauer, Fabienne
  • sysbio-curie/exact-stoch-log-mod. (2020) Koltai, Mihály
  • Data from: The global compendium of Aedes aegypti and Ae. albopictus occurrence. (2015) Kraemer, Moritz U. G., Sinka, Marianne E., Duda, Kirsten A., Mylne, Adrian, Shearer, Freya M., Brady, Oliver J., Messina, Jane P., Barker, Christopher M., Moore, Chester G., Carvalho, Roberta G., Coelho, Giovanini E., Van Bortel, Wim, Hendrickx, Guy, Schaffner, Francis, Wint, G. R. William, Elyazar, Iqbal R. F., Teng, Hwa-Jen, Hay, Simon I.
  • fkrauer/RSV-seasonality-public. (2022) Krauer, Fabienne
  • Datasets and code for "Mapping the plague through natural language processing". (2021) Krauer, Fabienne, Schmid, Boris V.
  • Evidence for Community Transmission of Community-Associated but Not Health-Care-Associated Methicillin-Resistant Staphylococcus Aureus Strains Linked to Social and Material Deprivation: Spatial Analysis of Cross-sectional Data. (2016) Kretzschmar, Mirjam E. E., Tosas Auguet, Olga, Betley, Jason R., Stabler, Richard, Patel, Amita, Ioannou, Avgousta, Marbach, Helene, Hearn, Pasco, Aryee, Anna, Goldenberg, Simon D., Otter, Jonathan A., Desai, Nergish, Karadag, Tacim, Grundy, Chris, Gaunt, Michael, Cooper, Ben S., Edgeworth, Jonathan D., Kypraios, Theodore
  • Evaluating the informed push model intervention in Senegal. (2020) Krug, Catarina, Lynch, Caroline, Cavallaro, Francesca, Wong, Kerry folder_zip
  • Evaluating the adolescents 360 approach in Ogun (Nigeria), Nasarawa (Nigeria), Oromia (Ethiopia) and Mwanza (Tanzania) – Study data. (2023) Krug, Catarina, Neuman, Melissa, Rosen, James E, Weinberger, Michelle, Wallach, Stefanie, Lagaay, Mary, Punton, Melanie, Prakash, Annapoorna, Nsanya, Mussa Kelvin, Ayieko, Philip, Kapiga, Saidi, Ajayi, Yewande P, Crawford, Emily E, Tenaw, Eskindir, Mussa, Mohammed, Shrestha, Som Kumar, Bottomley, Christian, Hargreaves, James, Doyle, Aoife M. description
  • scrapR. (2018) Kucharski, Adam
  • adamkucharski/covid-import-model. (2021) Kucharski, Adam J.
  • S1 Dataset for "Transmission Dynamics of Zika Virus in Island Populations: A Modelling Analysis of the 2013–14 French Polynesia Outbreak". (2016) Kucharski, Adam J., Funk, Sebastian, Eggo, Rosalind M., Mallet, Henri-Pierre, Edmunds, W. John, Nilles, Eric J. description
  • Probability of a large 2019-nCoV outbreak following introduction of cases. (2020) Kucharski, Adam J., Russell, Timothy W., Diamond, Charlie, CMMID nCoV working group, Funk, Sebastian, Eggo, Rosalind M.
  • Reported contacts dataset for "Structure and consistency of self-reported social contact networks in British secondary schools". (2018) Kucharski, Adam J., Wenham, Clare, Brownlee, Polly, Racon, Lucie, Widmer, Natasha, Eames, Ken T. D., Conlan, Andrew J. K.
  • adamkucharski/fiji-denv3-2014. (2018) Kucharski, Adam J, Kama, Mike, Watson, Conall H, Aubry, Maite, Funk, Sebastian, Henderson, Alasdair D, Brady, Oliver J, Vanhomwegen, Jessica, Manuguerra, Jean-Claude, Lau, Colleen L, Edmunds, W John, Aaskov, John, Nilles, Eric James, Cao-Lormeau, Van-Mai, Hue, Stephane, Hibberd, Martin L
  • School's Out: Seasonal Variation in the Movement Patterns of School Children. S1 Dataset. Reported individual travel patterns. (2015) Kucharski, Adam, Conlan, Andrew J. K., Eames, Ken grid_on
  • Characterizing the Transmission Potential of Zoonotic Infections from Minor Outbreaks: Simulation and Inference code. (2015) Kucharski, Adam, Edmunds, John description
  • Data from: Distinguishing between reservoir exposure and human-to-human transmission for emerging pathogens using case onset data. (2015) Kucharski, Adam, Mills, Harriet, Pinsent, Amy, Fraser, Christophe, Kerkhove, Maria Van, Riley, Steven
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  • Health facility utilisation changes during the introduction of community case management of malaria in South Western Uganda: An interrupted time series approach. (2015) Lal, Sham, Ndyomugenyi, Richard, Alexander, Neal, Lagarde, Mylene, Paintain, Lucy, Magnussen, Pascal, Chandramoham, Daniel, Clarke, Sian
  • Saving Lives at Birth; development of a retrospective theory of change, impact framework and prioritised metrics. (2018) Lalli, Marek, Ruysen, Harriet, Blencowe, Hannah, Yee, Kristen, Clune, Karen, DeSilva, Mary, Leffler, Marissa, Hillman, Emily, El-Noush, Haitham, Mulligan, Jo, Murray, Jeffrey C., Silver, Karlee, Lawn, Joy E.
  • epiverse-trace/epiparameter. (2023) Lambert, Joshua, Gruson, Hugo, Kucharski, Adam J., Gupte, Pratik, Salmon, Maëlle, Campos, Andree Valle, Monticone, Pietro
  • epiverse-trace/simulist. (2024) Lambert, Joshua, Gruson, Hugo, Kucharski, Adam J., Tamayo Cuartero, Carmen
  • Loa loa Alben Trial data. (2016) Lammie, Patrick J., Kamgno, Joseph, Nguipdop-Djomo, Patrick, Gounoue, Raceline, Téjiokem, Mathurin, Kuesel, Annette C.
  • Data from: Safety and immunogenicity of H1/IC31®, an adjuvanted TB subunit vaccine, in HIV-infected adults with CD4+ Lymphocyte counts greater than 350 cells/mm3: a phase II, multi-centre, double-blind, randomized, placebo-controlled trial. (2015) Landay, Alan, Reither, Klaus, Katsoulis, Lynn, Beattie, Trevor, Gardiner, Nicolene, Lenz, Nicole, Said, Khadija, Mfinanga, Elirehema, Pohl, Christian, Fielding, Katherine L., Jeffery, Hannah, Kagina, Benjamin M., Hughes, Elisabeth J., Scriba, Thomas J., Hanekom, Willem A., Hoff, Søren T., Bang, Peter, Kromann, Ingrid, Daubenberger, Claudia, Andersen, Peter, Churchyard, Gavin J.
  • Herpes Zoster Vaccine Effectiveness against Incident Herpes Zoster and Post-herpetic Neuralgia in an Older US Population: A Cohort Study. (2013) Langan, Sinead, Smeeth, Liam, Margolis, David J, Thomas, Sara L
  • Every Newborn INDEPTH (EN-INDEPTH) Study - Additional Materials. (2020) Lawn, Joy E., Waiswa, Peter, Waiswa, Joseph Akuze, Kwesiga, Doris, Blencowe, Hannah, Baschieri, Angela, Gordeev, Vladimir S., EN-INDEPTH Collaborator Group grid_on
  • COVID-SCORE: A global survey to assess public perceptions of government responses to COVID-19 (COVID-SCORE-10). (2020) Lazarus, Jeffrey V., Ratzan, Scott, Palayew, Adam, Billari, Francesco C., Binagwaho, Agnes, Kimball, Spencer, Larson, Heidi J., Melegaro, Alessia, Rabin, Kenneth, White, Trenton M., El-Mohandes, Ayman
  • Age-Dependent Prevalence of Nasopharyngeal Carriage of Streptococcus pneumoniae before Conjugate Vaccine Introduction: Supporting Information. (2014) Le Polain, Olivier, Flasche, Stefan, Prieto, David, Edmunds, John description
  • qleclerc/COVID_bed_occupancy. (2021) Leclerc, Quentin J.
  • qleclerc/mrsa_phage_dynamics. (2022) Leclerc, Quentin J.
  • qleclerc/phage_antibiotic_dynamics. (2023) Leclerc, Quentin J.
  • COVID19 settings of transmission - collected reports database. (2020) Leclerc, Quentin J., Fuller, Naomi M., Knight, Lisa E., Funk, Sebastian, Knight, Gwenan M.
  • Summary table of the elements recorded in the 43 studies included in our review from Mathematical modelling to study the horizontal transfer of antimicrobial resistance genes in bacteria: current state of the field and recommendations. (2019) Leclerc, Quentin J., Lindsay, Jodi A., Knight, Gwenan M.
  • AR.IA App drug breakdown (groups). (2019) Leclerc, Quentin J., Naylor, Nichola R., Aiken, Alexander M., Coll, Francesc, Knight, Gwenan M.
  • AR.IA App species breakdown. (2019) Leclerc, Quentin J., Naylor, Nichola R., Aiken, Alexander M., Coll, Francesc, Knight, Gwenan M.
  • qleclerc/nhs_pathways_report. (2020) Leclerc, Quentin J., Nightingale, Emily, Abbott, Sam
  • Data and R code to accompany 'Spatial connectivity in mosquito-borne disease models: a systematic review of methods and assumptions'. (2021) Lee, Sophie A.
  • sophie-a-lee/spatial_smooth_framework: Data and R code to accompany 'A Bayesian modelling framework to quantify multiple sources of spatial variation for disease mapping'. (2022) Lee, Sophie A.
  • Data and R code to accompany 'The impact of climate suitability, urbanisation, and connectivity on the expansion of dengue in 21st century Brazil' (version 1.0.0). (2021) Lee, Sophie A., Economou, Theodoros, de Castro Catão, Rafael, Barcellos, Christovam, Lowe, Rachel
  • tsleng93/SocialBubble: Social Bubble (including density dependence). (2020) Leng, Trystan, Flasche, Stefan
  • The impact of insecticide treated curtains on dengue virus transmission: A cluster randomized trial in Iquitos, Peru. (2020) Lenhart, Audrey, Morrison, Amy C., Paz-Soldan, Valerie A., Forshey, Brett M., Cordova-Lopez, Jhonny J., Astete, Helvio, Elder, John P., Sihuincha, Moises, Gotlieb, Esther E., Halsey, Eric S., Kochel, Tadeusz J., Scott, Thomas W., Alexander, Neal, McCall, Philip J.
  • Social contact data for Hong Kong. (2018) Leung, Kathy, Jit, Mark, Lau, Eric H. Y., Wu, Joseph T.
  • Social contact data for Hong Kong. (2020) Leung, Kathy, Jit, Mark, Lau, Eric H. Y., Wu, Joseph T.
  • Stimulating Influenza Vaccination via Prosocial Motives. S3 Dataset. (2016) Li, Meng, Taylor, Eric G., Atkins, Katherine E., Chapman, Gretchen B., Galvani, Alison P.
  • A Comparison of Different Community Models of ART Delivery Amongst Stable HIV+ Patients in two Urban Settings in Zambia - Study Protocol. (2021) Limbada, Mohammed, Ayles, Helen, Macleod, David picture_as_pdf
  • liang-yu12/vd_covid. (2021) Lin, Liang Yu
  • Supplementary data files & video for Carrasco-Tenezaca published in the Journal of the Royal Society Interface, 'The relationship between house height and mosquito house entry: an experimental study in rural Gambia. (2021) Lindsay, Steve, Carrasco-Tenezaca, Majo, Jawara, Musa, Bradley, John, D'Alessandro, Umberto, Jeffries, David, Pinder, Margaret, Knudsen, Jakob
  • Chjulian/sheffield_HT: Characterising within-hospital SARS-CoV-2 transmission events. (2021) Lindsey, Benjamin B., Villabona-Arenas, Christian Julian, Atkins, Katherine E., Campbell, Finlay
  • yangclaraliu/COVID19_NPIs_vs_Rt. (2020) Liu, Yang
  • yangclaraliu/COVID_Vac_Delay. (2022) Liu, Yang
  • yangclaraliu/2019nCoV_proportion_asym: WOR Submission. (2020) Liu, Yang, Funk, Sebastian, Flasche, Stefan
  • yangclaraliu/covid_surveillance_strategy: WOR Submission. (2020) Liu, Yang, Gong, Wenfeng, Clifford, Samuel, Sundaram, Maria E, CMMID COVID-19 Working Group, Jit, Mark, Flasche, Stefan, Klepac, Petra
  • yangclaraliu/covid_vac_africa: BMCMed_R3. (2023) Liu, Yang, Procter, Simon R, Pearson, Carl A. B., Madriz Montero, Andres, Torres-Rueda, Sergio, Asfaw, Elias, Uzochukwu, Benjamin, Drake, Tom, Bergren, Eleanor, Eggo, Rosalind M., Ruiz, Francis, Ndembi, Nicaise, Nonvignon, Justice, Jit, Mark, Vassall, Anna
  • Optimising health and economic impacts of COVID-19 vaccine rollout strategies in the WHO European Region. (2021) Liu, Yang, Sandmann, Frank G., Barnard, Rosanna C., Pearson, Carl A.B., CMMID Working-19 Working Group, Pastore, Roberta, Pebody, Richard, Flasche, Stefan, Jit, Mark
  • Country Level COVID-19 Vaccination Prioritisation Decision Support Tool for WHO EUR. (2021) Liu, Yang, Sandmann, Frank, Barnard, Rosanna C., Pearson, Carl A. B., LSHTM CMMID COVID-19 Working Group, Davies, Nicholas G., Jit, Mark
  • Technical appendix to "The hidden health and economic burden of rotavirus gastroenteritis in Malaysia: an estimation using multiple data sources". (2016) Loganathan, Tharani, Ng, Chiu-Wan, Lee, Way-Seah, Jit, Mark
  • Data and R-code to accompany 'Towards an Early Warning System for Leptospirosis in North-Eastern Argentina'. (2023) Lotto Batista, Martín, Rees, Eleanor M., Gómez, Andrea, López, Soledad, Castell, Stefanie, Kucharski, Adam J., Ghozzi, Stéphane, Müller, Gabriela V, Lowe, Rachel
  • Supplementary material from "Interventions targeting non-symptomatic cases can be important to prevent local outbreaks: SARS-CoV-2 as a case study". (2021) Lovell-Read, Francesca A., Funk, Sebastian, Obolski, Uri, Donnelly, Christl A., Thompson, Robin N.
  • Data and R code to accompany 'Combined effects of hydrometeorological hazards and urbanisation on dengue risk in Brazil: a spatiotemporal modelling study'. (2021) Lowe, Rachel
  • Stan code and input data for estimating adjusted seroprevalence. (2022) Lucinde, Ruth K., Mugo, Daisy, Bottomley, Christian, Karani, Angela, Gardiner, Elizabeth, Aziza, Rabia, Gitonga, John N., Karanja, Henry, Nyagwange, James, Tuju, James, Wanjiku, Perpetual, Nzomo, Edward, Kamuri, Evans, Thuranira, Kaugiria, Agunda, Sarah, Nyutu, Gideon, Etyang, Anthony O., Adetifa, Ifedayo M. O., Kagucia, Eunice, Uyoga, Sophie, Otiende, Mark, Otieno, Edward, Ndwiga, Leonard, Agoti, Charles N., Aman, Rashid A., Mwangangi, Mercy, Amoth, Patrick, Kasera, Kadondi, Nyaguara, Amek, Ng’ang’a, Wangari, Ochola, Lucy B., Namdala, Emukule, Gaunya, Oscar, Okuku, Rosemary, Barasa, Edwine, Bejon, Philip, Tsofa, Benjamin, Ochola-Oyier, L. Isabella, Warimwe, George M., Agweyu, Ambrose, Scott, J. Anthony G., Gallagher, Katherine E.
  • Data for: Identifying human encounters that shape the transmission of Streptococcus pneumoniae and other acute respiratory infections. (2018) le Polain de Waroux, Olivier, Flasche, Stefan, Kucharski, Adam J, Langendorf, Celine, Ndazima, Donny, Mwanga-Amumpaire, Juliet, Grais, Rebecca F, Cohuet, Sandra, Edmunds, W John
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  • Respondent-Driven Sampling and Total Population Data from a Rural Ugandan Cohort, 2010: Special Licence Access. (2022) MRC/UVRI, White, Richard
  • Spatial and temporal development of deltamethrin resistance in malaria vectors of the Anopheles gambiae complex from North Cameroon. (2019) Mandeng, Stanislas Elysée, Awono-Ambene, Herman Parfait, Bigoga, Jude D, Ekoko, Wolfgang Eyisap, Binyang, Jérome, Piameu, Michael, Mbakop, Lili Ranaise, Fesuh, Betrand Nono, Mvondo, Narcisse, Tabue, Raymond, Nwane, Philippe, Mimpfoundi, Rémy, Toto, Jean Claude, Kleinschmidt, Immo, Knox, Tessa Bellamy, Mnzava, Abraham Peter, Donnelly, Martin James, Fondjo, Etienne, Etang, Josiane
  • Read Code List - Arrhythmia. (2017) Mansfield, Kathryn E., Douglas, Ian J., Nitsch, Dorothea, Thomas, Sara L, Smeeth, Liam, Tomlinson, Laurie description
  • Code lists for: "Acute kidney injury and infections in patients taking antihypertensive drugs: a self-controlled case series analysis". (2017) Mansfield, Kathryn E., Douglas, Ian J., Nitsch, Dorothea, Thomas, Sara L, Smeeth, Liam, Tomlinson, Laurie A.
  • ICD-10 Code List - Arrhythmia. (2017) Mansfield, Kathryn E., Douglas, Ian J., Nitsch, Dorothea, Thomas, Sara L, Smeeth, Liam, Tomlinson, Laurie A. description
  • ICD-10 Code List - Cardiac Failure. (2017) Mansfield, Kathryn E., Douglas, Ian J., Nitsch, Dorothea, Thomas, Sara L, Smeeth, Liam, Tomlinson, Laurie A. description
  • ICD-10 Code List - Diabetes Mellitus. (2017) Mansfield, Kathryn E., Douglas, Ian J., Nitsch, Dorothea, Thomas, Sara L, Smeeth, Liam, Tomlinson, Laurie A. description
  • ICD-10 Code List - ESRD. (2017) Mansfield, Kathryn E., Douglas, Ian J., Nitsch, Dorothea, Thomas, Sara L, Smeeth, Liam, Tomlinson, Laurie A. description
  • ICD-10 Code List - Hypertension. (2017) Mansfield, Kathryn E., Douglas, Ian J., Nitsch, Dorothea, Thomas, Sara L, Smeeth, Liam, Tomlinson, Laurie A. description
  • ICD-10 Code List - Ischaemic Heart Disease. (2017) Mansfield, Kathryn E., Douglas, Ian J., Nitsch, Dorothea, Thomas, Sara L, Smeeth, Liam, Tomlinson, Laurie A. description
  • OPCS Code List - ESRD. (2017) Mansfield, Kathryn E., Douglas, Ian J., Nitsch, Dorothea, Thomas, Sara L, Smeeth, Liam, Tomlinson, Laurie A. description
  • Read Code List - Cardiac Failure. (2017) Mansfield, Kathryn E., Douglas, Ian J., Nitsch, Dorothea, Thomas, Sara L, Smeeth, Liam, Tomlinson, Laurie A. code
  • Read Code List - ESRD. (2017) Mansfield, Kathryn E., Douglas, Ian J., Nitsch, Dorothea, Thomas, Sara L, Smeeth, Liam, Tomlinson, Laurie A. description
  • Read Code List - Gastroenteritis. (2017) Mansfield, Kathryn E., Douglas, Ian J., Nitsch, Dorothea, Thomas, Sara L, Smeeth, Liam, Tomlinson, Laurie A. description
  • Read Code List - Hypertension. (2017) Mansfield, Kathryn E., Douglas, Ian J., Nitsch, Dorothea, Thomas, Sara L, Smeeth, Liam, Tomlinson, Laurie A. description
  • Read Code List - Ischaemic Heart Disease. (2017) Mansfield, Kathryn E., Douglas, Ian J., Nitsch, Dorothea, Thomas, Sara L, Smeeth, Liam, Tomlinson, Laurie A. description
  • Read Code List - Lower Respiratory Tract Infection. (2017) Mansfield, Kathryn E., Douglas, Ian J., Nitsch, Dorothea, Thomas, Sara L, Smeeth, Liam, Tomlinson, Laurie A. description
  • Read Code List - Urinary Tract Infection. (2017) Mansfield, Kathryn E., Douglas, Ian J., Nitsch, Dorothea, Thomas, Sara L, Smeeth, Liam, Tomlinson, Laurie A. description
  • ICD-10 Code List - Acute Kidney Injury. (2017) Mansfield, Kathryn E., Douglas, Ian J., Nitsch, Dorothea, Thomas, Sara, Smeeth, Liam, Tomlinson, Laurie A. description
  • Read Code List - Diabetes Mellitus. (2017) Mansfield, Kathryn E., Douglas, Ian J., Nitsch, Dorothea, Thomas, Sara, Smeeth, Liam, Tomlinson, Laurie A. code
  • Ebola Dataset for "Learning Clinical Epidemiology with R" tutorial. (2017) Marks, Michael, Camacho, Anton, Kucharski, Adam, Funk, Sebastian, Edmunds, John, Piot, Peter description
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  • Clinical risk groups for Pneumococcal Polysaccharide Vaccine. (2020) Mcdonald, Helen, Evans, Dai, Clay, Simon, Edelstein, Michael, Thomas, Sara
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  • Additional file 2 of Lack of an association between dietary patterns and adiposity among primary school children in Kilimanjaro Tanzania. (2022) Mosha, Mary Vincent, Paulo, Heavenlight A., Msuya, Sia E., Grosskurth, Heiner, Filteau, Suzanne
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  • Number and proportions of AGYW aged 15–22 years retained in the study vs those lost to follow up at endline (2019), by AGYW characteristics. (2021) Mulwa, Sarah, Chimoyi, Lucy, Agbla, Schadrac, Osindo, Jane, Wambiya, Elvis O, Gourlay, Annabelle, Birdthistle, Isolde, Ziraba, Abdhalah, Floyd, Sian
  • Number of interventions accessed by age group, schooling status at baseline, and invitation to DREAMS. (2021) Mulwa, Sarah, Chimoyi, Lucy, Agbla, Schadrac, Osindo, Jane, Wambiya, Elvis O, Gourlay, Annabelle, Birdthistle, Isolde, Ziraba, Abdhalah, Floyd, Sian
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  • Supplementary files 2 and 3 for "Linking health facility data from young adults aged 18-24 years to longitudinal demographic data: Experience from The Kilifi Health and Demographic Surveillance System". (2020) Nyundo, Christopher, Doyle, Aoife M., Walumbe, David, Otiende, Mark, Kinuthia, Michael, Amadi, David, Jibendi, Boniface, Mochamah, George, Kihuha, Norbert, Williams, Thomas, Ross, David A., Bauni, Evasius
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  • Additional file 1 of Facilitators and barriers to seasonal malaria chemoprevention (SMC) uptake in Nigeria: a qualitative approach. (2023) Ogbulafor, Nnenna, Uhomoibhi, Perpetua, Shekarau, Emmanuel, Nikau, Jamilu, Okoronkwo, Chukwu, Fanou, Nadia M. L., Mbaye, Ibrahima Marietou, Ndiaye, Jean-Louis, Tchouatieu, Andre-Marie, Poku-Awuku, Abena, Merle, Corinne, Scott, Susana, Milligan, Paul, Ali, Aminu, Yusuf, Hauwa’u Evelyn, Oguche, Stephen, Dahiru, Tukur
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  • Quality of care in a differentiated HIV service delivery intervention in Tanzania: A mixed methods study. (2021) Okere, Nwanneka, Meta, Judith, Maokola, Werner, Martelli, Giulia, van Praag, Eric, Naniche, Denise, Gomez, Gabriela, Pozniak, Anton, Rinke de Wit, Tobias, de Klerk, Josien, Hermans, Sabine
  • Supplementary appendix 1b of Oliphant NP, Ray N, Curtis A et al. Optimising scale and deployment of community health workers in Sierra Leone: a geospatial analysis. 2022. (2022) Oliphant, NP, Ray, Nicolas, Curtis, Andrew, Musa, Elizabeth, Sesay, Momodou, Kandeh, Joseph, Kamara, Anitta, Chimoun, Ebeny Francois Temgbait, Jackson, Debra, Doherty, Tanya
  • Supplementary appendix 1b of Oliphant NP, Ray N, Curtis A et al. Optimizing scale and deployment of CHWs in Sierra Leone: a geospatial analysis. 2021. (2022) Oliphant, NP, Ray, Nicolas, Curtis, Andrew, Musa, Elizabeth, Sesay, Momodou, Kandeh, Joseph, Kamara, Anitta, Chimoun, Ebeny Francois Temgbait, Jackson, Debra, Doherty, Tanya
  • Supplementary Appendix 1b of "Optimizing geographical accessibility to primary health care at community level in Niger: a geospatial analysis". (2021) Oliphant, Nicholas P, Ray, Nicolas, Bensaid, Khaled, Ouedraogo, Adama, Gali, Asma Yaroh, Habi, Oumarou, Maazou, Ibrahim, Panciera, Rocco, Muñiz, Maria, Manda, Samuel OM, Sy, Zeynabou, Jackson, Debra, Doherty, Tanya
  • Supplementary Appendix 1c of "Toward a geography of community health workers in Niger: a geospatial analysis". (2021) Oliphant, Nicholas P, Ray, Nicolas, Bensaid, Khaled, Ouedraogo, Adama, Gali, Asma Yaroh, Habi, Oumarou, Maazou, Ibrahim, Panciera, Rocco, Muñiz, Maria, Manda, Samuel OM, Sy, Zeynabou, Jackson, Debra, Doherty, Tanya
  • Supplementary Appendix 1b of "Optimising geographical accessibility to primary health care: a geospatial analysis of community health posts and community health workers in Niger". (2021) Oliphant, Nicholas Paul, Ray, Nicolas, Bensaid, Khaled, Ouedraogo, Adama, Gali, Asma Yaroh, Habi, Oumarou, Maazou, Ibrahim, Panciera, Rocco, Muñiz, Maria, Sy, Zeynabou, Manda, Samuel, Jackson, Debra, Doherty, Tanya
  • Supplementary Appendix 1c of "Optimising geographical accessibility to primary health care: a geospatial analysis of community health posts and community health workers in Niger". (2021) Oliphant, Nicholas Paul, Ray, Nicolas, Bensaid, Khaled, Ouedraogo, Adama, Gali, Asma Yaroh, Habi, Oumarou, Maazou, Ibrahim, Panciera, Rocco, Muñiz, Maria, Sy, Zeynabou, Manda, Samuel, Jackson, Debra, Doherty, Tanya
  • The global scientific research response to the public health emergency of Zika virus infection. S1 Data. (2020) Oliveira, Juliane Fonseca de, Pescarini, Julia Moreira, Rodrigues, Moreno de Souza, Almeida, Bethania de Araujo, Henriques, Claudio Maierovitch Pessanha, Gouveia, Fabio Castro, Rabello, Elaine Teixeira, Matta, Gustavo Correa, Barreto, Mauricio L., Sampaio, Ricardo Barros
  • Geocoded database of health facilities with verified capacity for caesarean section in urban Nigeria. (2023) Olubodun, Tope, Macharia, Peter M, Wong, Kerry LM, Gwacham-Anisiobi, Uchenna, Ogunyemi, Olakunmi, Beňová, Lenka, Omolade Abejirinde, Ibukun-Oluwa, Makanga, Prestige Tatenda, Wang, Jia, Afolabi, Bosede B., Banke-Thomas, Aduragbemi
  • Dataset 1: Genotyping results for 111 single nucleotide polymorphisms (SNPs) typed in 2486 Plasmodium falciparum samples collected from primary school children during a parasitological survey in western Kenya in 2009 and 2010. (2017) Omedo, Irene, Mogeni, Polycarp, Rockett, Kirk
  • Dataset 2: Single nucleotide polymorphisms (SNPs) and distance differences between Plasmodium falciparum parasite pairs sampled during a parasitological survey of primary school children in western Kenya. (2017) Omedo, Irene, Mogeni, Polycarp, Rockett, Kirk
  • Micro-epidemiological structuring of Plasmodium falciparum parasite populations in regions with varying transmission intensities in Africa. (2017) Omendo, Irene, Mogeni, Polycarp, Bousema, Teun, Rockett, Kirk A., Amambua-Ngwa, Alfred, Oyier, Isabella, Stevenson, Jennifer C., Baidjoe, Amrish, de Villiers, Etienne P., Fegan, Greg, Ross, Amanda, Hubbart, Christina, Jeffreys, Anne, Williams, Thomas N., Kwiatkowski, Dominic, Bejon, Philip
  • Replication Data for: Reliability and validity of the World Health Organization reading standards for paediatric chest radiographs used in the field in an impact study of Pneumococcal Conjugate Vaccine in Kilifi, Kenya. (2018) Ominde, Micah Siraba, Scott, Anthony
  • Invariance of the WHO violence against women instrument among Kenyan adolescent girls and young women: Bayesian psychometric modeling. S1 Dataset. (2021) Orindi, Benedict O., Ziraba, Abdhalah, Bruyneel, Luk, Floyd, Sian, Lesaffre, Emmanuel
  • Additional file 2 of Prevalence, indications, and complications of caesarean section in health facilities across Nigeria: a systematic review and meta-analysis. (2023) Osayande, Itohan, Ogunyemi, Olakunmi, Gwacham-Anisiobi, Uchenna, Olaniran, Abimbola, Yaya, Sanni, Banke-Thomas, Aduragbemi
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  • Replication Data for: Mortality in rural coastal Kenya measured using the Kilifi Health and Demographic Surveillance System: a 16-year descriptive analysis. (2021) Otiende, Mark, Bauni, Evasius, Nyaguara, Amek, Amadi, David, Nyundo, Christopher, Tsory, Emmanuel, Walumbe, David, Kinuthia, Michael, Kihuha, Norbert, Kahindi, Michael, Nyutu, Gideon, Moisi, Jennifer, Deribew, Amare, Agweyu, Ambrose, Marsh, Kevin, Tsofa, Benjamin, Bejon, Philip, Bottomley, Christian, Williams, Thomas N, Scott, J Anthony G
  • Replication Data for: Impact of COVID-19 on mortality in coastal Kenya: a longitudinal open cohort study. (2023) Otiende, Mark, Nyaguara, Amek, Bottomley, Christian, Walumbe, David, Mochamah, George, Amadi, David, Nyundo, Christopher, Kagucia, Eunice, Etyang, Anthony, Adetifa, Ifedayo, Brand, Sam, Maitha, Eric, Chondo, Elwyn, Nzomo, Eddy, Aman, Rashid, Mwangangi, Mercy, Amoth, Patrick, Kasera, Kadondi, Ng'ang'a, Wangari, Barasa, Edwin, Tsofa, Benjamin, Mwangangi, Joseph, Bejon, Philip, Agweyu, Ambrose, Williams, Thomas N., Scott, J. Anthony G.
  • Replication Data for: Impact of the introduction of rotavirus vaccine on hospital admissions for diarrhoea among children in Kenya: A controlled interrupted time series analysis. (2019) Otieno, Grieven P., Bottomley, Christian, Khagayi, Sammy, Ogwel, Billy, Nokes, D. James
  • Replication Data for: Surveillance of endemic human coronaviruses (HCoV-NL63, OC43 and 229E) associated with pneumonia in Kilifi, Kenya. (2020) Otieno, Grieven P., Murunga, Nickson, Agoti, Charles N., Gallagher, Katherine E., Awori, Juliet O., Nokes, D. James
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  • A Cluster-Randomized Controlled Trial to Reduce Diarrheal Disease and Dengue Entomological Risk Factors in Rural Primary Schools in Colombia. (2016) Overgaard, Hans J., Alexander, Neal, Matiz, Maria Ines, Jaramillo, Juan Felipe, Olano, Victor Alberto, Vargas, Sandra, Sarmiento, Diana, Lenhart, Audrey, Stenström, Thor Axel
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  • Evidence for Host-Bacterial Co-evolution via Genome Sequence Analysis of 480 Thai Mycobacterium tuberculosis Lineage 1 Isolates. (2018) Palittapongarnpim, Prasit, Ajawatanawong, Pravech, Viratyosin, Wasna, Smittipat, Nat, Disratthakit, Areeya, Mahasirimongkol, Surakameth, Yanai, Hideki, Yamada, Norio, Nedsuwan, Supalert, Imasanguan, Worarat, Kantipong, Pacharee, Chaiyasirinroje, Boonchai, Wongyai, Jiraporn, Toyo-oka, Licht, Phelan, Jody, Parkhill, Julian, Clark, Taane G., Hibberd, Martin L., Ruengchai, Wuthiwat, Palittapongarnpim, Panawun, Juthayothin, Tada, Tongsima, Sissades, Tokunaga, Katsushi
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  • denvax: Simple Dengue Test and Vaccinate Cost Thresholds. (2019) Pearson, Carl, Abbas, Kaja M., Clifford, Samuel, Flasche, Stefan, Hladish, Thomas J.
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  • Whole genome sequences for M.tuberculosis isolates from the TDR strain bank. (2015) Phelan, Jody, Coll, Francesc, Mcnerney, Ruth, Ascher, David B., Pires, Douglas E. V., Furnham, Nick, Coeck, Nele, Hill-Cawthorne, Grant A., Nair, Mridul B., Mallard, Kim, Ramsay, Andrew, Campino, Susana, Hibberd, Martin, Pain, Arnab, Rigouts, Leen, Clark, Taane description
  • Preservation of Tetherin and CD4 Counter-Activities in Circulating Vpu Alleles despite Extensive Sequence Variation within HIV-1 Infected Individuals. (2017) Pickering, Suzanne, Hue, Stephane, Kim, Eun-Young, Reddy, Susheel, Wolinsky, Steven M., Neil, Stuart J. D.
  • Data from: Global distribution maps of the Leishmaniases. (2015) Pigott, David M, Bhatt, Samir, Golding, Nick, Duda, Kirsten A., Battle, Katherine E., Brady, Oliver J., Messina, Jane P., Balard, Yves, Bastien, Patrick, Pratlong, Francine, Brownstein, John S., Freifeld, Clark C, Mekaru, Sumiko R., Gething, Peter W., George, Dylan B., Myers, Monica F., Hay, Simon I.
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  • tjhladish/covid-abm: Active Vaccination Experiment 2023-02-02. (2023) Pillai, Alexander N., Hladish, Thomas, Pearson, Carl A. B., Toh, Ben, Noah4944, Stoltzfus, Arlin
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  • Data file including CystiAgent simulation results, observed results from the Ring Strategy Trial, and all intervention settings for each village evaluated (n = 21 villages). (2021) Pray, Ian W., Pizzitutti, Francesco, Bonnet, Gabrielle, Gonzales-Gustavson, Eloy, Wakeland, Wayne, Pan, William K., Lambert, William E., Gonzalez, Armando E., Garcia, Hector H., O’Neal, Seth E.
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  • Relative role of border restrictions, case finding and contact tracing in controlling SARS-CoV-2 in the presence of undetected transmission: a mathematical modelling study. (2023) Pung, Rachael, Clapham, Hannah E, Russell, Timothy W., Lee, Vernon J., Kucharski, Adam J.
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  • Clinic attendance by sex and HIV status in rural South Africa. (2021) Randera-Rees, Safiyya, Safari, Wende Clarence, Gareta, Dickman, Herbst, Kobus, Baisley, Kathy, Grant, Alison D.
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  • Time to acute kidney injury and its predictors among newly diagnosed Type 2 diabetic patients at government hospitals in Harari Region, East Ethiopia. S1 Data. (2019) Regassa, Lemma Demissie, Gete, Yigzaw Kebede, Mekonnen, Fantahun Ayenew
  • Adherence to additional medication for management of HIV-associated comorbidities among older children and adolescents taking antiretroviral therapy. S1 Data. (2022) Rehman, Andrea M., Simms, Victoria, McHugh, Grace, Mujuru, Hilda, Ngwira, Lucky G., Semphere, Robina, Moyo, Brewster, Bandason, Tsitsi, Odland, Jon O., Ferrand, Rashida A.
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  • Correlation among experience of person-centered maternity care, provision of care and women’s satisfaction: Cross sectional study in Colombo, Sri Lanka. S1 File. (2021) Rishard, Mohamed, Fahmy, Fathima Fahila, Senanayake, Hemantha, Ranaweera, Augustus Keshala Probhodana, Armocida, Benedetta, Mariani, Ilaria, Lazzerini, Marzia
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  • o2geosocial: Reconstruction of Transmission Chains from Surveillance Data. (2021) Robert, Alexis, Funk, Sebastian, Kucharski, Adam J., Jombart, Thibaut
  • Behavioural change towards reduced intensity physical activity is disproportionately prevalent among adults with serious health issues or self-perception of high risk during the UK COVID-19 lockdown. (2021) Roberts, Chrissy, Rogers, Nina, Waterlow, Naomi, Brindle, Hannah, Enria, Luisa, Lees, Shelley description
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  • Additional file 1 of Did you hear about HIV self-testing? HIV self-testing awareness after community-based HIVST distribution in rural Zimbabwe. (2022) Rotsaert, Anke, Sibanda, Euphemia, Hatzold, Karin, Johnson, Cheryl, Corbett, Elizabeth, Neuman, Melissa, Cowan, Frances
  • National Survey of Sexual Attitudes and Lifestyles, 2010-2012: Secure Access. (2021) Russell, M., NatCen Social Research, London School of Hygiene & Tropical Medicine, Senior, M.
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  • Estimating the infection and case fatality ratio for COVID-19 using age-adjusted data from the outbreak on the Diamond Princess cruise ship. (2020) Russell, Timothy W., Hellewell, Joel, Jarvis, Christopher I., Van-Zandvoort, Kevin, Abbott, Sam, Ratnayake, Ruwan, Flasche, Stefan, Eggo, Rosalind M, Kucharski, Adam J.
  • thimotei/covid_travel_restrictions. (2020) Russell, Timothy W., Wu, Joseph T, Clifford, Samuel, CMMID COVID-19 working group, Edmunds, W John, Kucharski, Adam J., Jit, Mark
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  • Clinic attendance by sex and HIV status in rural South Africa - Data and Code. (2021) Safari, Wendy, Baisley, Kathy description
  • Contrasting impact of rural, versus urban, living on glucose metabolism and blood pressure in Uganda. (2019) Sanya, Richard, Webb, Emily html
  • Data supporting "Profiles of inflammation in rural and urban Uganda". (2021) Sanya, Richard, Webb, Emily html
  • Evaluating scope and bias of population-level measles serosurveys: a systematic review and bias assessment. (2023) Sbarra, Alyssa N.
  • Estimating national-level measles case–fatality ratios in low-income and middle-income countries: an updated systematic review and modelling study. (2022) Sbarra, Alyssa N., Mosser, Jonathan F, Jit, Mark, Ferrari, Matthew, Ramshaw, Rebecca E., O'Connor, Patrick, Krause, L Kendall, Rogowski, Emma LB, Portnoy, Allison
  • Dataset for: "Tuberculosis prevalence after four years of population-wide systematic TB symptom screening and universal testing and treatment for HIV in the HPTN 071 (PopART) community-randomised trial in Zambia and South Africa: findings from the TREATS study". (2023) Schaap, Albertus, Floyd, Sian description
  • Dataset for: "Factors associated with use of community-based, peer-led sexual and reproductive health services by adolescent boys and young men aged 18-24 in Lusaka, Zambia: A case control study nested in the Yathu Yathu Trial.". (2023) Schaap, Albertus, Phiri, Mwelwa description
  • Improving health worker performance through text messaging: A mixed-methods evaluation of a pilot intervention designed to increase coverage of intermittent preventive treatment of malaria in pregnancy in West Nile, Uganda. (2018) Schallig, Henk D. F. H., Rassi, Christian, Gore-langton, Georgia R., Gidudu Walimbwa, Badru, Strachan, Clare E., King, Rebecca, Basharat, Sinwan, Christiansen-Jucht, Celine, Graham, Kirstie, Gudoi, Sam Siduda
  • Improving newborn survival in Southern Tanzania endline impact survey 2013: Mtwara and Lindi regions. (2015) Schellenberg, Joanna
  • Data for: "Travel and tuberculosis in migrants". (2023) Schwalb, Alvaro description
  • RISK11 signature scores for the biomarker-guided tuberculosis preventive therapy (CORTIS) randomised controlled trial. (2021) Scriba, Thomas J, Fiore-Gartland, Andrew, Penn-Nicholson, Adam, Mulenga, Humphrey, Kimbung Mbandi, Stanley, Borate, Bhavesh, Mendelsohn, Simon C, Hadley, Katie, Hikuam, Chris, Kaskar, Masooda, Musvosvi, Munyaradzi, Bilek, Nicole, Self, Steven, Sumner, Tom, White, Richard G, Erasmus, Mzwandile, Jaxa, Lungisa, Raphela, Rodney, Innes, Craig, Brumskine, William, Hiemstra, Andriëtte, Malherbe, Stephanus T, Hassan-Moosa, Razia, Tameris, Michèle, Walzl, Gerhard, Naidoo, Kogieleum, Churchyard, Gavin, Hatherill, Mark
  • RISK11 signature scores for the biomarker-guided tuberculosis preventive therapy (CORTIS) randomised controlled trial. (2021) Scriba, Thomas J, Fiore-Gartland, Andrew, Penn-Nicholson, Adam, Mulenga, Humphrey, Kimbung Mbandi, Stanley, Borate, Bhavesh, Mendelsohn, Simon C, Hadley, Katie, Hikuam, Chris, Kaskar, Masooda, Musvosvi, Munyaradzi, Bilek, Nicole, Self, Steven, Sumner, Tom, White, Richard G, Erasmus, Mzwandile, Jaxa, Lungisa, Raphela, Rodney, Innes, Craig, Brumskine, William, Hiemstra, Andriëtte, Malherbe, Stephanus T, Hassan-Moosa, Razia, Tameris, Michèle, Walzl, Gerhard, Naidoo, Kogieleum, Churchyard, Gavin, Hatherill, Mark
  • Data for: "Estimates of the Burden of Group B Streptococcal Disease Worldwide for Pregnant Women, Stillbirths, and Children". (2017) Seale, Anna C, Bianchi-jassir, Fiorella, Russell, Neal, Kohli-lynch, Maya, Tann, Cally, Hall, Jenny, Madrid, Lola, Blencowe, Hannah, Cousens, Simon, Baker, Carol, Bartlett, Linda, Cutland, Clare, Gravett, Michael, Heath, Paul, Ip, Margaret, Le Doare, Kirsty, Madhi, Shabir, Rubens, Craig E, Saha, Samir, Schrag, Stephanie, Sobanjo-ter Meulen, Ajoke, Vekemans, Johan, Lawn, Joy E html
  • Global analysis of Plasmodium falciparum histidine-rich protein-2 ( pfhrp2 ) and pfhrp3 gene deletions using whole-genome sequencing data and meta-analysis. (2018) Sepúlveda, Nuno, Phelan, Jody, Diez-Benavente, Ernest, Campino, Susana, Clark, Taane G., Hopkins, Heidi, Sutherland, Colin, Drakeley, Chris J., Beshir, Khalid B.
  • fsera/COVIDWeather. (2021) Sera, Francesco, Abbott, Sam, Roye, Dominic
  • Supplemental material for Women’s understanding of economic abuse in North-Western Tanzania. (2021) Serpa Pimentel, Anna de, Mshana, Gerry, Aloyce, Diana, Peter, Esther, Mchome, Zaina, Malibwa, Donati, Dwarumpudi, Annapoorna, Kapiga, Saidi, Stöckl, Heidi
  • Using Observational Data to Estimate the Effect of Hand Washing and Clean Delivery Kit Use by Birth Attendants on Maternal Deaths after Home Deliveries in Rural Bangladesh, India and Nepal. (2015) Seward, Nadine, Prost, Andrew, Copas, Andrew, Corbin, Marine, Li, Leah, Colbourn, Tim, Osrin, David, Neuman, Melissa, Azad, Kishwar, Kuddus, Abdul, Nair, Nirmala, Tripathy, Prasanta, Manandhar, Dharma, Costello, Anthony, Cortina-Borja, Mario
  • Data for: "Importance of ventilation and occupancy to Mycobacterium tuberculosis transmission rates in congregate settings". (2021) Shaikh, Nabila, McCreesh, Nicky, Deol, Arminder folder_zip
  • Depressive symptoms and HIV risk behaviours among adolescents enrolled in the HPTN071 (PopART) trial in Zambia and South Africa. Aggregate dataset. (2022) Shanaube, Kwame, Gachie, Thomas, Hoddinott, Graeme, Schaap, Albertus, Floyd, Sian, Mainga, Tila, Bond, Virginia, Hayes, Richard, Fidler, Sarah, Ayles, Helen
  • Database of Plasmodium knowlesi infections recorded in humans, macaque reservoirs and vectors. (2016) Shearer, Freya M., Huang, Zhi, Weiss, Daniel J., Wiebe, Antoinette, Gibson, Harry S., Battle, Katherine E., Pigott, David M., Brady, Oliver J., Putaporntip, Chaturong, Jongwutiwes, Somchai, Lau, Yee Ling, Manske, Magnus, Amato, Roberto, Elyazar, Iqbal R. F., Vythilingam, Indra, Bhatt, Samir, Gething, Peter W., Singh, Balbir, Golding, Nick, Hay, Simon I., Moyes, Catherine L.
  • epiforecasts/rt-comparison-uk-public: v1.0.0. (2020) Sherratt, Katharine
  • covid19-forecast-hub-europe/euro-hub-ensemble: Zenodo release. (2022) Sherratt, Katharine, Funk, Sebastian
  • Additional file 1: of Mapping the medical outcomes study HIV health survey (MOS-HIV) to the EuroQoL 5 Dimension (EQ-5D-3 L) utility index. (2019) Shi, Yuan, Thompson, Jennifer, Walker, A Sarah, Paton, Nicholas, Cheung, Yin Bun
  • Replication Data for: Malaria in pregnancy: adverse effects on haemoglobin levels and birthweight in primigravidae and multigravidae. (2021) Shulman, Caroline E, Dorman, Edgar K, Cutts, Felicity, Kawuondo, Ken, Bulmer, Judith N., Peshu, Norbert, Marsh, Kevin
  • Effectiveness of a peer-led adolescent mental health intervention on HIV virological suppression and mental health in Zimbabwe: data collection documents. (2021) Simms, Vicky
  • A non-randomised cohort study of mental health and HIV virological suppression in people living with HIV receiving Friendship Bench lay counselling in Harare, Zimbabwe - Virological Suppression Questionnaire. (2023) Simms, Vicky, Chibanda, Dixon, Abas, Melanie, Munetsi, Epiphania
  • Effectiveness of a peer-led adolescent mental health intervention on HIV virological suppression and mental health in Zimbabwe: Baseline and Endline questionnaires. (2021) Simms, Vicky, Chinoda, Silindweyinkosi description
  • Friendship Bench trial: lay worker training in problem-solving therapy to reduce symptoms of common mental disorders. (2021) Simms, Victoria description
  • Data from: The temporal dynamics and infectiousness of subpatent Plasmodium falciparum infections in relation to parasite density. (2019) Slater, Hannah C., Ross, Amanda, Felger, Ingrid, Hofmann, Natalie E., Robinson, Leanne, Cook, Jackie, Gonçalves, Bronner P., Björkman, Anders, Ouedraogo, Andre Lin, Morris, Ulrika, Msellem, Mwinyi, Koepfli, Cristian, Mueller, Ivo, Tadesse, Fitsum, Gadisa, Endalamaw, Domingo, Gonzalo, Kapulu, Melissa, Midega, Janet, Owusu-Agyei, Seth, Nabet, Cécile, Piarroux, Renaud, Doumbo, Ogobara, Doumbo, Safiatou Niare, Koram, Kwadwo, Lucchi, Naomi, Udhayakumar, Venkatachalam, Mosha, Jacklin, Tiono, Alfred, Chandramohan, Daniel, Gosling, Roly, Mwingira, Felista, Sauerwein, Robert, Riley, Eleanor M., White, Nicholas J., Nosten, Francois, Imwong, Mallika, Bousema, Teun, Drakeley, Chris, Okell, Lucy C.
  • Additional file 1: of Identifying mixed Mycobacterium tuberculosis infections from whole genome sequence data. (2018) Sobkowiak, Benjamin, Glynn, Judith R., Houben, Rein M. G. J., Mallard, Kim, Phelan, Jody E., Guerra-Assunção, José Afonso, Banda, Louis, Mzembe, Themba, Viveiros, Miguel, McNerney, Ruth, Parkhill, Julian, Crampin, Amelia C., Clark, Taane G.
  • Pneumococcal carriage in children and their household contacts six years after introduction of the 13-valent pneumococcal conjugate vaccine in England. (2018) Southern, Jo, Andrews, Nick, Sandu, Pamela, Sheppard, Carmen L., Waight, Pauline A., Fry, Norman K., Vanhoek, Albert Jan, Miller, Elizabeth
  • Data collection tools for: "Understanding the social and physical menstrual health environment of secondary schools in Uganda: A qualitative methods study". (2023) Ssemata, Andrew Sentoogo, Ndekezi, Denis, Kansiime, Catherine, Bakanoma, Robert, Tanton, Clare, Nelson, Kate Andrews, Hytti, Laura, Neema, Stella, Torondel, Belen, Seeley, Janet, Weiss, Helen A.
  • Data from: Human cytomegalovirus epidemiology and relationship to tuberculosis and cardiovascular disease risk factors in a rural Ugandan cohort. (2018) Stockdale, Lisa, Nash, Stephen, Nalwoga, Angela, Painter, Hannah, Asiki, Gershim, Fletcher, Helen, Newton, Robert
  • jstockwin/EpiEstimApp: v1.0.0. (2019) Stockwin, Jake, Thompson, Robin, Cori, Anne, Jombart, Thibaut, Kamvar, Zhian N., FitzJohn, Rich
  • Data from: Unravelling the immune signature of Plasmodium falciparum transmission-reducing immunity. (2018) Stone, Will J. R., Campo, Joseph J., Ouédraogo, André Lin, Meerstein-Kessel, Lisette, Morlais, Isabelle, Da, Dari, Cohuet, Anna, Nsango, Sandrine, Sutherland, Colin J., van de Vegte-Bolmer, Marga, Siebelink-Stoter, Rianne, van Gemert, Geert-Jan, Graumans, Wouter, Lanke, Kjerstin, Shandling, Adam D., Pablo, Jozelyn V., Teng, Andy A., Jones, Sophie, de Jong, Roos M., Fabra-García, Amanda, Bradley, John, Roeffen, Will, Lasonder, Edwin, Gremo, Giuliana, Schwarzer, Evelin, Janse, Chris J., Singh, Susheel K., Theisen, Michael, Felgner, Phil, Marti, Matthias, Drakeley, Chris, Sauerwein, Robert, Bousema, Teun, Jore, Matthijs M.
  • Crimean-congo haemorrhagic fever virus detected in Rhipicephalus ticks feeding on cattle in an abattoir, Uganda. (2020) Stubbs, Sam
  • BILHIV acceptability dataset. (2020) Sturt, Amy, Bustinduy, Amaya, Phiri, Comfort description
  • Data for: "Cervicovaginal Immune Activation in Zambian Women with Female Genital Schistosomiasis". (2021) Sturt, Amy, Bustinduy, Amaya, Webb, Emily description
  • Data for: Expert review of images from hand-held colposcopy in Zambian women with genital schistosomiasis. (2022) Sturt, Amy, Webb, Emily, Bristowe, Henrietta, Bustinduy, Amaya
  • Data for: “The presence of hemoglobin in cervicovaginal lavage is not associated with genital schistosomiasis in Zambian women from the BILHIV study”. (2022) Sturt, Amy, Webb, Emily, Bustinduy, Amaya description
  • Mathematical model projections for: "Application of provincial data in mathematical modelling to inform sub-national tuberculosis program decision-making in South Africa". (2018) Sumner, Tom folder_zip
  • tomsumner/CORTIS_HR_CE. (2021) Sumner, Tom
  • tomsumner/Latency_Model_Comparison_Public. (2020) Sumner, Tom
  • tomsumner/Variance_SA_TB. (2022) Sumner, Tom
  • Mapping the cryptic spread of the 2015–2016 global Zika virus epidemic. (2020) Sun, Haoyang, Dickens, Borame L., Jit, Mark, Cook, Alex R., Carrasco, L. Roman
  • Data for the paper on “Does early growth failure influence later school performance? A cohort study in Karonga district, northern Malawi”. (2018) Sunny, Bindu, Glynn, Judith R., Crampin, Amelia C. description
  • Data for the paper on "Early school failure predicts teenage pregnancy and marriage: a large population-based cohort study in Northern Malawi". (2018) Sunny, Bindu, Glynn, Judith R., Crampin, Amelia C., Kanjala, Chifundo html
  • Data for: "Neonatal mortality risk for vulnerable newborn types in 15 countries using 125.5 million nationwide birth outcome records, 2000–2020". (2023) Suárez-Idueta, Lorena, Blencowe, Hannah, Okwaraji, Yemisrach B., Yargawa, Judith, Bradley, Ellen, Gordon, Adrienne, Flenady, Vicky, Paixao Cruz, Enny S., Barreto, Mauricio L., Lisonkova, Sarka, Wen, Qi, Velebil, Petr, Jírová, Jitka, Horváth-Puhó, Erzsebet, Sørensen, Henrik Toft, Sakkeus, Luule, Abuladze, Lili, Yunis, Khalid A., Bizri, Ayah Al, Barranco, Arturo, Broeders, Lisa, van Dijk, Aimée E., Alyafei, Fawziya, Olukade, Tawa O., Razaz, Neda, Söderling, Jonas, Smith, Lucy K., Draper, Elizabeth S., Lowry, Estelle, Rowland, Neil, Wood, Rachael, Monteath, Kirsten, Pereyra, Isabel, Pravia, Gabriella, Ohuma, Eric O., Lawn, Joy E. description
  • Data for: "Neonatal mortality risk of large for gestational age and macrosomic live births in 15 countries including 115.6 million nationwide linked records, 2000–2020". (2023) Suárez-Idueta, Lorena, Ohuma, Eric O., Chang, Chia-Jung, Hazel, Elizabeth A., Yargawa, Judith, Okwaraji, Yemisrach B., Bradley, Ellen, Gordon, Adrienne, Sexton, Jessica, Lawford, Harriet, Paixao cruz, Enny S., Falcão, Ila Rocha, Lisonkova, Sarka, Wen, Qi, Velebil, Petr, Jírová, Jitka, Horváth-Puhó, Erzsebet, Sørensen, Henrik Toft, Sakkeus, Luule, Abuladze, Lili, Yunis, Khalid A., Bizri, Ayah Al, Alvarez Lopez, Sonia, Broeders, Lisa, van Dijk, A. E., Alyafei, Fawziya, AlQubaisi, Mai, Razaz, Neda, Söderling, Jonas, Smith, Lucy K., Matthews, Ruth, Lowry, Estelle, Rowland, Neil, Wood, Rachael, Monteath, Kirsten, Pereyra, Isabel, Pravia, Gabriella, Lawn, Joy E., Blencowe, Hannah description
  • Hand Hygiene Social Norms among Healthcare Workers During Early COVID-19: Results of a Global Survey. (2022) Szekely, Aron, Gon, Giorgia, Lowe, Hattie, Tosi, Marco
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  • Anopheles stephensi mosquitoes as vectors of Plasmodium vivax and falciparum, Horn of Africa, 2019. (2021) Tadesse, Fitsum G., Ashine, Temesgen, Teka, Hiwot, Esayas, Endashaw, Messenger, Louisa A., Chali, Wakweya, Meerstein-Kessel, Lisette, Walker, Thomas, Wolde Behaksra, Sinknesh, Lanke, Kjerstin, Heutink, Roel, Jeffries, Claire L., Mekonnen, Daniel Abebe, Hailemeskel, Elifaged, Tebeje, Surafel K., Tafesse, Temesgen, Gashaw, Abrham, Tsegaye, Tizita, Emiru, Tadele, Kigozi, Simon, Bogale, Eyuel Asemahegn, Yohannes, Gedeon, Kedir, Soriya, Shumie, Girma, Sabir, Senya Asfer, Mumba, Peter, Dengela, Dereje, Kolaczinski, Jan H., Wilson, Anne, Churcher, Thomas S., Chibsa, Sheleme, Murphy, Matthew, Balkew, Meshesha, Irish, Seth, Drakeley, Chris, Gadisa, Endalamaw, Bousema, Teun
  • Geographic variation in dengue seroprevalence and force of infection in the urban paediatric population of Indonesia. (2018) Tam, Clarence C., O’Driscoll, Megan, Taurel, Anne-Frieda, Nealon, Joshua, Hadinegoro, Sri Rezeki
  • Second Study of Infectious Intestinal Disease in the United Kingdom, 2008-2009. (2016) Tam, Clarence, Viviani, Laura
  • PIF influenza costing analysis and probabilistic sensitivity analysis. (2023) Tang, Fanny Fong-Yi, Kosana, Priya, Jit, Mark, Terris-Prestholt, Fern, Wu, Dan, Ong, Jason J, Tucker, Joseph D
  • PIF influenza participant questionnaire responses and donation amounts dataset. (2023) Tang, Fanny Fong-Yi, Kosana, Priya, Jit, Mark, Terris-Prestholt, Fern, Wu, Dan, Ong, Jason J, Tucker, Joseph D
  • Decreased community-acquired pneumonia coincided with rising awareness of precautions before governmental containment policy in Japan. (2023) Tashiro, Masato, Sato, Shuntaro, Endo, Akira
  • Seroprevalence of Chikungunya virus and living conditions in Feira de Santana, Bahia-Brazil. S1 Database. (2021) Teixeira, Maria Glória, Skalinski, Lacita Menezes, Paixao Cruz, Enny S., Costa, Maria da Conceição N., Barreto, Florisneide Rodrigues, Campos, Gubio Soares, Sardi, Silvia Ines, Carvalho, Rejane Hughes, Natividade, Marcio, Itaparica, Martha, Dias, Juarez Pereira, Trindade, Soraya Castro, Teixeira, Bárbara Pereira, Morato, Vanessa, Santana, Eloisa Bahia, Goes, Cristina Borges, Silva, Neuza Santos de Jesus, Santos, Carlos Antonio de Souza Teles, Rodrigues, Laura C., Whitworth, Jimmy
  • wtennant/rvf_comoros: Supporting data and code for 'Modelling the persistence and control of Rift Valley fever virus in a spatially heterogeneous landscape'. (2021) Tennant, Warren S. D., Cardinale, Eric, Cêtre-Sossah, Catherine, Moutroifi, Youssouf, Le Godais, Gilles, Colombi, Davide, Spencer, Simon E. F., Tildesley, Mike J., Keeling, Matt J., Charafouddine, Onzade, Colizza, Vittoria, Edmunds, W. John, Métras, Raphaëlle
  • Focus group discussion transcripts. (2022) Tewahido, Dagmawit, Worku, Alemayehu, Tadesse, Amare W., Gulema, Hanna, Berhane, Yemane
  • deusthindwa/ optimal.age.targeting.pneumo.vaccines: OptionaAgeTargetingPneumococcalVaccines. (2023) Thindwa, Deus, Clifford, Samuel
  • deusthindwa/social.contact.rates.estimation.hiv.malawi. (2022) Thindwa, Deus, Jambo, Kondwani C., Ojal, John, MacPherson, Peter, Dennis Phiri, Mphatso, Pinsent, Amy, Khundi, Mcewen, Chiume, Lingstone, Gallagher, Katherine E., Heyderman, Robert S., Corbett, Elizabeth L., French, Neil, Flasche, Stefan
  • deusthindwa/Electronic-Data-Capture-for-Large-Scale-Typhoid-Surveillance---STRATAA: edc. (2020) Thindwa, Deus, Oxford Vaccine Group, Mujadidi, Yama Farooq
  • COVID-19 risk group - Neurological disease codelist. (2020) Thomas, Sara description
  • Code lists for: "Social determinants of pertussis and influenza vaccine uptake in pregnancy: a national cohort study using electronic health records". (2020) Thomas, Sara
  • Influenza clinical risk groups 2017 version - Asthma. (2020) Thomas, Sara description
  • Influenza clinical risk groups 2017 version - Chronic cardiac conditions. (2020) Thomas, Sara description
  • Influenza clinical risk groups 2017 version - Chronic renal disease diagnoses. (2020) Thomas, Sara description
  • Influenza clinical risk groups 2017 version - Chronic respiratory disease (not asthma). (2020) Thomas, Sara description
  • Influenza clinical risk groups 2017 version - Diabetes. (2020) Thomas, Sara code
  • Influenza risk groups 2017 version - Chronic liver disease. (2020) Thomas, Sara description
  • Comparison of small-sample standard-error corrections for generalised estimating equations in stepped wedge cluster randomised trials with a binary outcome: A simulation study. (2020) Thompson, Jennifer
  • Additional file 2 of Cluster randomised trials with a binary outcome and a small number of clusters: comparison of individual and cluster level analysis method. (2022) Thompson, Jennifer A., Leyrat, Clemence, Fielding, Katherine L., Hayes, Richard J.
  • Host Immune Responses Differ between M. africanum- and M. tuberculosis-Infected Patients following Standard Anti-tuberculosis Treatment. (2016) Tientcheu, Leopold, Haks, Mariëlle C., Agbla, Schadrac, Sutherland, Jayne, Adetifa, Ifedayo, Donkor, Simon, Quinten, Edwin, Daramy, Mohammed, Antonio, Martin, Kampmann, Beate, Ottenhoff, Tom H. M., Dockrell, Hazel, Ota, Martin O.
  • Dataset: Cash transfer project. (2022) Timire, Collins, Sandy, Charles, Ferrand, Rashida A., Mubau, Regina, Shiri, Peter, Mbiriyawanda, Obert, Mbiba, Fredrick, Houben, Rein M. G. J., Pedrazzoli, Debora, Bond, Virginia, Foster, Nicola, Kranzer, Katharina
  • Additional file 4: of Why is malaria associated with poverty? Findings from a cohort study in rural Uganda. (2016) Tusting, Lucy S., Rek, John, Arinaitwe, Emmanuel, Staedke, Sarah G., Kamya, Moses R., Cano, Jorge, Bottomley, Christian, Johnston, Deborah, Dorsey, Grant, Lindsay, Steve W., Lines, Jo
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  • Replication Data for: Prevalence of SARS-CoV-2 Antibodies from a one-year National Serosurveillance of Kenyan Blood Transfusion Donors. (2021) Uyoga, Sophie, Adetifa, Ifedayo M.O., Otiende, Mark, Gitonga, John N., Mugo, Daisy, Nyagwange, James, Karanja, Henry Kibe, Tuju, James, Makale, Johnstone, Aman, Rashid, Mwangangi, Mercy, Amoth, Patrick, Kasera, Kadondi, Ng’ang’a, Wangari, Chege, Evelynn, Yegon, Christine, Kithi, Khamisi, Odhiambo, Elizabeth, Rotich, Thomas, Orgut, Irene, Kihara, Sammy, Bottomley, Christian, Kagucia, Eunice W., Gallagher, Katherine E., Etyang, Anthony, Voller, Shirine, Lambe, Teresa, Wright, Daniel, Barasa, Edwine, Tsofa, Benjamin, Mwangangi, Joseph, Bejon, Philip, Ochola-Oyier, Lynette I., Warimwe, George M., Agweyu, Ambrose, Scott, J. Anthony G.
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  • COVID-19 vaccine development pipeline. (2020) Vaccine Centre
  • Data for: "Implementing a care pathway for small and nutritionally at-risk infants under six months of age: a multi-country stakeholder consultation". (2023) Van Immerzeel, Tabitha, Day, Louise Tina, Kerac, Marko, Grijalva-Eternod, Carlos, Diagne, Maty, Murungi, Amanda, Deme/Ly, Indou, Diouf, Saliou description
  • Social contact data for IDPs in Somaliland (2019). (2021) Van Zandvoort, Kevin, Bobe, Mohamed Omer, Hassan, Abdirahman Ibrahim, Abdi, Mohamed Ismail, Ahmed, Mohamed Saed, Warsame, Mohamed Yusuf, Wais, Muna Awil, Diggle, Emma, Satzke, Catherine, Mulholland, Kim, Egeh, Mohamed Mohamoud, Hassan, Mukhtar Muhumed, Hergeeye, Mohamed Abdi, Eggo, Rosalind M., Checchi, Francesco, Flasche, Stefan
  • Social contacts and other risk factors for respiratory infections among internally displaced people in Somaliland. Data and analyses. (2022) Van Zandvoort, Kevin, Bobe, Mohamed Omer, Hassan, Abdirahman Ibrahim, Abdi, Mohamed Ismail, Ahmed, Mohammed Saed, Soleman, Saeed Mohamood, Warsame, Mohamed Yusuf, Wais, Muna Awil, Diggle, Emma, Satzke, Catherine, Mulholland, Kim, Egeh, Mohamed Mohamoud, Hassan, Mukhtar Muhumed, Hergeeye, Mohamed Abdi, Eggo, Rosalind M., Checchi, Francesco, Flasche, Stefan, Mcgowan, Catherine R.
  • Shielding individuals at high risk of COVID-19: a micro-simulation study. Model and analyses. (2023) Van Zandvoort, Kevin, Checchi, Francesco
  • Economic evaluation of HIV-exposure Prophylaxis among men who have sex with men in England: Supplementary material. (2017) VanHoek, Albert
  • Data for Thinking Healthy Programme India trial (THPP-India). (2018) Vanobberghen, Fiona, Weiss, Helen, D’Souza, Ethel, Patel, Vikram, Rahman, Atif, Fuhr, Daniela, Weobung, Benedict, Lazarus, Anisha description
  • Data for Thinking Healthy Programme Pakistan trial (THPP-Pakistan). (2018) Vanobberghen, Fiona, Weiss, Helen, Zaidi, Ahmed, Patel, Vikram, Rahman, Atif, Sikander, Siham, Fuhr, Daniela, Ahmad, Ikhlaq description
  • Household HCT Data. (2016) Velen, Kavindhran, Lewis, James J, Charalambous, Salome, Page-Shipp, Liesl, Popane, Flora, Churchyard, Gavin J., Hoffmann, Christopher J.
  • Epigenome-wide association study for perceived discrimination among sub-Saharan African migrants in Europe - the RODAM study. (2020) van der Laan, Loes C., Meeks, Karlijn A. C., Chilunga, Felix P., Agyemang, Charles, Venema, Andrea, Mannens, Marcel M. A. M., Zafarmand, Mohammad H., Klipstein-Grobusch, Kerstin, Smeeth, Liam, Adeyemo, Adebowale, Henneman, Peter
  • kevinvzandvoort/espicc-somaliland-digaale-survey-2019. (2022) van zandvoort, Kevin, Bobe, Mohamed Omer, Hassan, Abdirahman Ibrahim, Abdi, Mohamed Ismail, Ahmed, Mohammed Saed, Soleman, Saeed Mohamood, Warsame, Mohamed Yusuf, Wais, Muna Awil, Diggle, Emma, McGowan, Catherine R, Satzke, Catherine, Mulholland, Kim, Egeh, Mohamed Mohamoud, Hassan, Mukhtar Muhumed, Hergeeye, Mohamed Abdi, Eggo, Rosalind M, Checchi, Francesco, Flasche, Stefan
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  • WOMAN Trial - Clinical and contextual factors surrounding the deaths of 483 women following post-partum haemorrhage in developing countries. (2017) WOMAN Trial Collaborators
  • Replication Data for: Hypothermia amongst neonatal admissions in Kenya: A Retrospective Cohort Study Assessing Prevalence, Trends, Risk Factors, and its Relationship with All-Cause Neonatal Mortality. (2023) Wainaina, John, Ogero, Morris, Mumelo, Livingstone, Wairoto, Kefa, Mbevi, George, Tuti, Timothy, Mwaniki, Paul, Irimu, Grace, English, Mike, Aluvaala, Jalemba, The Clinical Information Network Author Group
  • Association between DREAMS and experiences of violence among AGYW followed up in 2019 by site and age group using conventional logistic regression. (2023) Wambiya, Elvis Omondi Achach, Gourlay, Annabelle J, Mulwa, Sarah, Magut, Faith, Mthiyane, Nondumiso, Orindi, Benedict, Chimbindi, Natsayi, Kwaro, Daniel, Shahmanesh, Maryam, Floyd, Sian, Birdthistle, Isolde, Ziraba, Abdhalah
  • Association between invitation to DREAMS and any experience of violence among AGYW in Gem using conventional logistic regression. (2023) Wambiya, Elvis Omondi Achach, Gourlay, Annabelle J, Mulwa, Sarah, Magut, Faith, Mthiyane, Nondumiso, Orindi, Benedict, Chimbindi, Natsayi, Kwaro, Daniel, Shahmanesh, Maryam, Floyd, Sian, Birdthistle, Isolde, Ziraba, Abdhalah
  • Association between invitation to DREAMS and any experience of violence among AGYW in Nairobi using conventional logistic regression. (2023) Wambiya, Elvis Omondi Achach, Gourlay, Annabelle J, Mulwa, Sarah, Magut, Faith, Mthiyane, Nondumiso, Orindi, Benedict, Chimbindi, Natsayi, Kwaro, Daniel, Shahmanesh, Maryam, Floyd, Sian, Birdthistle, Isolde, Ziraba, Abdhalah
  • Association between invitation to DREAMS and any experience of violence among AGYW in uMkhanyakude using conventional logistic regression. (2023) Wambiya, Elvis Omondi Achach, Gourlay, Annabelle J, Mulwa, Sarah, Magut, Faith, Mthiyane, Nondumiso, Orindi, Benedict, Chimbindi, Natsayi, Kwaro, Daniel, Shahmanesh, Maryam, Floyd, Sian, Birdthistle, Isolde, Ziraba, Abdhalah
  • Association between invitation to DREAMS and emotional violence among AGYW in Gem using conventional logistic regression, 13–22 year-olds. (2023) Wambiya, Elvis Omondi Achach, Gourlay, Annabelle J, Mulwa, Sarah, Magut, Faith, Mthiyane, Nondumiso, Orindi, Benedict, Chimbindi, Natsayi, Kwaro, Daniel, Shahmanesh, Maryam, Floyd, Sian, Birdthistle, Isolde, Ziraba, Abdhalah
  • Association between invitation to DREAMS and emotional violence among AGYW in Nairobi using conventional logistic regression, 13–22 year-olds. (2023) Wambiya, Elvis Omondi Achach, Gourlay, Annabelle J, Mulwa, Sarah, Magut, Faith, Mthiyane, Nondumiso, Orindi, Benedict, Chimbindi, Natsayi, Kwaro, Daniel, Shahmanesh, Maryam, Floyd, Sian, Birdthistle, Isolde, Ziraba, Abdhalah
  • Association between invitation to DREAMS and emotional violence among AGYW in uMkhanyakude using conventional logistic regression, 13–22 year-olds. (2023) Wambiya, Elvis Omondi Achach, Gourlay, Annabelle J, Mulwa, Sarah, Magut, Faith, Mthiyane, Nondumiso, Orindi, Benedict, Chimbindi, Natsayi, Kwaro, Daniel, Shahmanesh, Maryam, Floyd, Sian, Birdthistle, Isolde, Ziraba, Abdhalah
  • Association between invitation to DREAMS and physical violence among AGYW in Gem using conventional logistic regression, 13–22 year-olds. (2023) Wambiya, Elvis Omondi Achach, Gourlay, Annabelle J, Mulwa, Sarah, Magut, Faith, Mthiyane, Nondumiso, Orindi, Benedict, Chimbindi, Natsayi, Kwaro, Daniel, Shahmanesh, Maryam, Floyd, Sian, Birdthistle, Isolde, Ziraba, Abdhalah
  • Association between invitation to DREAMS and physical violence among AGYW in Nairobi using conventional logistic regression, 13–22 year-olds. (2023) Wambiya, Elvis Omondi Achach, Gourlay, Annabelle J, Mulwa, Sarah, Magut, Faith, Mthiyane, Nondumiso, Orindi, Benedict, Chimbindi, Natsayi, Kwaro, Daniel, Shahmanesh, Maryam, Floyd, Sian, Birdthistle, Isolde, Ziraba, Abdhalah
  • Association between invitation to DREAMS and sexual violence among AGYW in Gem using conventional logistic regression, 13–22 year-olds. (2023) Wambiya, Elvis Omondi Achach, Gourlay, Annabelle J, Mulwa, Sarah, Magut, Faith, Mthiyane, Nondumiso, Orindi, Benedict, Chimbindi, Natsayi, Kwaro, Daniel, Shahmanesh, Maryam, Floyd, Sian, Birdthistle, Isolde, Ziraba, Abdhalah
  • Association between invitation to DREAMS and sexual violence among AGYW in Nairobi using conventional logistic regression, 13–22 year-olds. (2023) Wambiya, Elvis Omondi Achach, Gourlay, Annabelle J, Mulwa, Sarah, Magut, Faith, Mthiyane, Nondumiso, Orindi, Benedict, Chimbindi, Natsayi, Kwaro, Daniel, Shahmanesh, Maryam, Floyd, Sian, Birdthistle, Isolde, Ziraba, Abdhalah
  • Association between invitation to DREAMS and sexual violence among AGYW in uMkhanyakude using conventional logistic regression, 13–22 year-olds. (2023) Wambiya, Elvis Omondi Achach, Gourlay, Annabelle J, Mulwa, Sarah, Magut, Faith, Mthiyane, Nondumiso, Orindi, Benedict, Chimbindi, Natsayi, Kwaro, Daniel, Shahmanesh, Maryam, Floyd, Sian, Birdthistle, Isolde, Ziraba, Abdhalah
  • Characteristics of DREAMS beneficiaries and non-beneficiaries at time of cohort enrolment by invitation to DREAMS in Nairobi, Gem and uMkhanyakude. (2023) Wambiya, Elvis Omondi Achach, Gourlay, Annabelle J, Mulwa, Sarah, Magut, Faith, Mthiyane, Nondumiso, Orindi, Benedict, Chimbindi, Natsayi, Kwaro, Daniel, Shahmanesh, Maryam, Floyd, Sian, Birdthistle, Isolde, Ziraba, Abdhalah
  • Proportions of AGYW retained in the study vs lost to follow up by 2019, by AGYW characteristics in Gem. (2023) Wambiya, Elvis Omondi Achach, Gourlay, Annabelle J, Mulwa, Sarah, Magut, Faith, Mthiyane, Nondumiso, Orindi, Benedict, Chimbindi, Natsayi, Kwaro, Daniel, Shahmanesh, Maryam, Floyd, Sian, Birdthistle, Isolde, Ziraba, Abdhalah
  • Proportions of AGYW retained in the study vs lost to follow up by 2019, by AGYW characteristics in Nairobi. (2023) Wambiya, Elvis Omondi Achach, Gourlay, Annabelle J, Mulwa, Sarah, Magut, Faith, Mthiyane, Nondumiso, Orindi, Benedict, Chimbindi, Natsayi, Kwaro, Daniel, Shahmanesh, Maryam, Floyd, Sian, Birdthistle, Isolde, Ziraba, Abdhalah
  • Sensitivity analyses on the effect of DREAMS on experiences of violence among AGYW. (2023) Wambiya, Elvis Omondi Achach, Gourlay, Annabelle J, Mulwa, Sarah, Magut, Faith, Mthiyane, Nondumiso, Orindi, Benedict, Chimbindi, Natsayi, Kwaro, Daniel, Shahmanesh, Maryam, Floyd, Sian, Birdthistle, Isolde, Ziraba, Abdhalah
  • Association between invitation to DREAMS and physical violence among AGYW in uMkhanyakude using conventional logistic regression, 13–22 year-olds. (2023) Wambiya, Elvis Omondi Achach, Gourlay, Annabelle, Mulwa, Sarah, Magut, Faith, Mthiyane, Nondumiso, Orindi, Benedict, Chimbindi, Natsayi, Kwaro, Daniel, Shahmanesh, Maryam, Floyd, Sian, Birdthistle, Isolde, Ziraba, Abdhalah
  • Proportions of AGYW retained in the study vs lost to follow up by 2019, by AGYW characteristics in uMkhanyakude. (2023) Wambiya, Elvis Omondi Achach, Gourlay, Annabelle, Mulwa, Sarah, Magut, Faith, Mthiyane, Nondumiso, Orindi, Benedict, Chimbindi, Natsayi, Kwaro, Daniel, Shahmanesh, Maryam, Floyd, Sian, Birdthistle, Isolde, Ziraba, Abdhalah
  • reichlab/covidHubUtils. (2021) Wang, Serena Yijin, Stark, Ariane, Evan Ray, Bosse, Nikos, Reich, Nicholas G, Sherratt, Katharine, Shah, Apurv, Wattanachit, Nutcha, Khoale1096, Huang, Yuxin David, Gerding, Aaron, Gruson, Hugo, Cramer, Estee, Shandross, Li, Abbott, Sam, Funk, Sebastian
  • Codelists for "Herpes zoster and dementia risk: a population-based matched cohort study". (2021) Warren-Gash, Charlotte, Davidson, Jennifer, Mcdonald, Helen, Cadogan, Sharon, Forbes, Harriet, Strongman, Helen, Langan, Sinead, Mansfield, Kathryn E., Smeeth, Liam, Muzambi, Rutendo, Shiekh, Suhail, LSHTM EHR Team, .
  • NaomiWaterlow/NextGenFlu_Kenya. (2022) Waterlow, Naomi
  • NaomiWaterlow/NhaTrang_flu_rsv_interaction. (2022) Waterlow, Naomi
  • NaomiWaterlow/markov_model: V1.0.0. (2023) Waterlow, Naomi
  • cmmid/coronavirus_immunity. (2021) Waterlow, Naomi R., Van Leeuwen, Edwin, Davies, Nicholas, Flasche, Stefan, Eggo, Rosalind M.
  • Social mixing in Fiji: Who-eats-with-whom contact patterns and the implications of age and ethnic heterogeneity for disease dynamics in the Pacific Islands. (2017) Watson, Conall H., Coriakula, Jeremaia, Ngoc, Dung Tran Thi, Flasche, Stefan, Kucharski, Adam J., Lau, Colleen L., Thieu, Nga Tran Vu, le Polain de Waroux, Olivier, Rawalai, Kitione, Van, Tan Trinh, Taufa, Mere, Baker, Stephen, Nilles, Eric J., Kama, Mike, Edmunds, W. John
  • Combined HIV Adolescent Prevention Study (CHAPS). (2022) Webb, Emily
  • Combined HIV Adolescent Prevention Study (CHAPS): qualitative survey data. (2022) Webb, Emily html
  • Data from a cluster randomized trial in Uganda concerning the management of fever cases in public health facilities. (2016) Webb, Emily description
  • Data supporting "Anthelminthic treatment receipt and its predictors in Lake Victoria fishing communities, Uganda: intervention coverage results from the LaVIISWA cluster randomised trial". (2018) Webb, Emily description
  • SONA project - Asthma management data. (2019) Webb, Emily, Mpairwe, Harriet description
  • LaVIISWA Round 1 and 2 Dataset. (2020) Webb, Emily, Nampijja, Margaret grid_on
  • Neurocognitive outcomes in Malawian children exposed to malaria during pregnancy: An observational birth cohort study. Anonymized dataset, wide format. (2021) Weckman, Andrea M., Conroy, Andrea L., Madanitsa, Mwayiwawo, Gnaneswaran, Bruno, McDonald, Chloe R., Kalilani-Phiri, Linda, Chandna, Jaya, Ali, Doreen, Mwapasa, Victor, Khairallah, Carole, Thwai, Kyaw Lay, Meshnick, Steven R., Taylor, Steve M., ter Kuile, Feiko O., Kain, Kevin C., Gladstone, Melissa
  • weerasuriya/tbconvax-pcb. (2022) Weerasuriya, Chathika Krishan
  • lshtm-tbmg/tbvax-pub. (2022) Weerasuriya, Chathika, Clark, Rebecca
  • Data for: "Menstrual health intervention and school attendance in Uganda (MENISCUS-2): A pilot intervention study". (2022) Weiss, Helen description
  • Menstrual Hygiene and Safe Male Circumcision Promotion in Ugandan Schools (MENISCUS). (2018) Weiss, Helen
  • PRIDE 12 month outcome dataset. (2021) Weiss, Helen, Bhat, Bhargav description
  • Ebola Contact Tracing Study data. (2019) Weiss, Helen, Danquah, Lisa, Hasham, Nadia, MacFarlane, Matthew
  • Data for: "Menstrual health and school absenteeism among adolescent girls in Uganda (MENISCUS): feasibility study". (2018) Weiss, Helen, Nakinyingi-Miiro, Jessica, Sembajjwe, Wilber folder_zip
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