Circulation of respiratory viruses during the COVID-19 pandemic in the Gambia

Jarju, SORCID logo; Senghore, E; Brotherton, HORCID logo; Saidykhan, A; Jallow, S; Krubally, EORCID logo; Sinjanka, E; Ndene, MN; Bajo, F; Sanyang, MM; Saidy, B; Bah, AORCID logo; Mohammed, NIORCID logo; Forrest, KORCID logo; Clarke, EORCID logo; Dalessandro, UORCID logo; Sesay, AK; Usuf, EORCID logo; Cerami, CORCID logo; Roca, AORCID logo; Kampmann, BORCID logo and De silva, T (2022). Circulation of respiratory viruses during the COVID-19 pandemic in the Gambia. [Dataset]. Open Science Framework. https://doi.org/10.17605/OSF.IO/TSF78
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Source data and tables showing respiratory viruses detected from Fajara, Keneba and PaTS. Between April 2020 and March 2022, respiratory viruses were detected using RT-PCR in nasopharyngeal swabs from 1397 participants with influenza-like illness. An assay to detect SARS-CoV-2 and a viral multiplex RT-PCR assay was used as previously described to detect influenza A and B, respiratory syncytial virus (RSV) A and B, parainfluenza viruses 1-4, human metapneumovirus (HMPV), adenovirus, seasonal coronaviruses (229E, OC43, NL63) and human rhinovirus.

Keywords

SARS-CoV-2; respiratory viruses; Surveillance; Influenza like illness

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