Data for: "Kankasha in Kassala: a prospective observational cohort study of the clinical characteristics, epidemiology, genetic origin, and chronic impact of the 2018 epidemic of Chikungunya virus infection in Kassala, Sudan"

Bower, H, el Karsany, M, Adam, Abd Alhadi Adam Hussein, Idriss, MI, Alzain, MA, Alfakiyousif, MEA, Mohamed, R, Mahmoud, I, Albadri, O, Mahmoud, SAA, Abdalla, OI, Eldigail, M, Elagib, N, Arnold, U, Gutierrez8, B, Pybus, OG, Carter, DP, Pullan, ST, Jacob, ST, Abdallah, TM, Gannon, B and Fletcher, TE. 2021. Data for: "Kankasha in Kassala: a prospective observational cohort study of the clinical characteristics, epidemiology, genetic origin, and chronic impact of the 2018 epidemic of Chikungunya virus infection in Kassala, Sudan". [Online]. London School of Hygiene & Tropical Medicine, London, United Kingdom. Available from: https://doi.org/10.17037/DATA.00002018.

Bower, H, el Karsany, M, Adam, Abd Alhadi Adam Hussein, Idriss, MI, Alzain, MA, Alfakiyousif, MEA, Mohamed, R, Mahmoud, I, Albadri, O, Mahmoud, SAA, Abdalla, OI, Eldigail, M, Elagib, N, Arnold, U, Gutierrez8, B, Pybus, OG, Carter, DP, Pullan, ST, Jacob, ST, Abdallah, TM, Gannon, B and Fletcher, TE. Data for: "Kankasha in Kassala: a prospective observational cohort study of the clinical characteristics, epidemiology, genetic origin, and chronic impact of the 2018 epidemic of Chikungunya virus infection in Kassala, Sudan". [Internet] LSHTM Data Compass. London, United Kingdom: London School of Hygiene & Tropical Medicine; 2021. Available from: https://doi.org/10.17037/DATA.00002018.

Bower, H, el Karsany, M, Adam, Abd Alhadi Adam Hussein, Idriss, MI, Alzain, MA, Alfakiyousif, MEA, Mohamed, R, Mahmoud, I, Albadri, O, Mahmoud, SAA, Abdalla, OI, Eldigail, M, Elagib, N, Arnold, U, Gutierrez8, B, Pybus, OG, Carter, DP, Pullan, ST, Jacob, ST, Abdallah, TM, Gannon, B and Fletcher, TE (2021). Data for: "Kankasha in Kassala: a prospective observational cohort study of the clinical characteristics, epidemiology, genetic origin, and chronic impact of the 2018 epidemic of Chikungunya virus infection in Kassala, Sudan". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002018.

Description

Description of data capture The study was a prospective hospital-based observational cohort of consecutive patients presenting to the Kassala Teaching Hospital medical and paediatrics outpatient departments between 10th and 16th October 2018. Recruitment criteria were individuals of any age or sex with symptoms consistent with the KTH case definition for Chikungunya, namely history of fever or a measured fever of >37.5oC (tympanic), and at least three of the following clinical features: headache, anorexia, lethargy, aching muscles or joints, breathing difficulties, vomiting, diarrhoea, stomach pain, difficulty swallowing, and hiccups, or bleeding of any kind. Patients with a positive malaria RDT were enrolled if they fit the study syndrome in case of co-infection. Participants were enrolled at presentation and blood samples taken immediately. Epidemiological information, clinical symptoms at presentation and subsequent laboratory results were recorded on standardised pro-formas (Supporting Information 1). The follow-up component took place 70-120 days after enrolment (Jan-Feb 2019) depending on the availability of participants. Adults who responded to phone follow-up provided convalescent samples and completed the WHO-validated Routine Assessment of Patient Index Data 3 (RAPID3) disability and pain survey.30 Children were not asked to return due to common reluctance to allow blood-draw from healthy children, but outcome and duration of hospital stay were confirmed with parents by phone. All contactable participants were given their PCR test results.
Data capture method Questionnaire, Field observation, Lab observation
Data Collection Period
FromTo
10 October 201816 October 2018
Date (Completed) 21 January 2021
Geographical area covered
North LatitudeEast LongitudeSouth LatitudeWest Longitude
15.733736.722215.334936.1358
Language(s) of written materials Arabic, English
Data Creators Bower, H, el Karsany, M, Adam, Abd Alhadi Adam Hussein, Idriss, MI, Alzain, MA, Alfakiyousif, MEA, Mohamed, R, Mahmoud, I, Albadri, O, Mahmoud, SAA, Abdalla, OI, Eldigail, M, Elagib, N, Arnold, U, Gutierrez8, B, Pybus, OG, Carter, DP, Pullan, ST, Jacob, ST, Abdallah, TM, Gannon, B and Fletcher, TE
Associated roles el Karsany, M (Principal Investigator), Fletcher, TE (Principal Investigator) and Gannon, B (Co-Investigator)
LSHTM Faculty/Department Faculty of Epidemiology and Population Health > Dept of Infectious Disease Epidemiology
Research Group Uk Public Health Rapid Support Team
Participating Institutions UK Public Health Rapid Support Team, London School of Hygiene & Tropical Medicine, London, United Kingdom
Funders
ProjectFunderGrant NumberFunder URI
UK Public Health Rapid Support Team ResearchDHSC Overseas Development AidRRT-1015-001UNSPECIFIED
Depositor Hilary Bower
Date Deposited 01 Mar 2021 16:20
Last Modified 01 Mar 2021 16:48
Publisher London School of Hygiene & Tropical Medicine

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Data

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Filename: KAS_dataset.csv

Description: Tabular dataset containing information collected on 142 patients who received treatment. Consult codebook for information

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Documentation

Filename: KAS_dataset_codebook.html

Description: Codebook for KAS dataset

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Filename: KAS_UserGuide.html

Description: User guide for KAS dataset

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Filename: UFOS_ConsentForm_adult.pdf

Description: UFOS – Consent form for adult participants

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Filename: UFOS_ParticipantInfoSheet.pdf

Description: UFOS – Participant Information Sheet

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Study Instrument

Filename: CHKV_follow-up_form.docx

Description: CHKV Follow-up Form (MS Word format)

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Filename: CHKV_follow-up_form.pdf

Description: CHKV Follow-up Form (PDF)

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Filename: UFOS_Case_Report_Form.pdf

Description: Aetiology of severe undifferentiated febrile illness outbreaks in Sudan Case Report Form (v 21.12.17)

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