Additional file 1: of Identifying mixed Mycobacterium tuberculosis infections from whole genome sequence data
Sobkowiak, B; Glynn, JR
; Houben, Rein M. G. J.; Mallard, K; Phelan, JE; Guerra-Assunção, JA; Banda, L; Mzembe, T; Viveiros, M; McNerney, R; Parkhill, J; Crampin, AC and Clark, TG
(2018).
Additional file 1: of Identifying mixed Mycobacterium tuberculosis infections from whole genome sequence data.
[Dataset].
Figshare.
https://doi.org/10.6084/m9.figshare.6968636.v1
; Houben, Rein M. G. J.; Mallard, K; Phelan, JE; Guerra-Assunção, JA; Banda, L; Mzembe, T; Viveiros, M; McNerney, R; Parkhill, J; Crampin, AC and Clark, TG
(2018).
Additional file 1: of Identifying mixed Mycobacterium tuberculosis infections from whole genome sequence data.
[Dataset].
Figshare.
https://doi.org/10.6084/m9.figshare.6968636.v1
Strain information and full results table for clinically-derived Malawi samples, in silico replicate samples and Portuguese replicate samples. Lineage, total number of SNPs, number of heterozygous sites and the mixture analysis result for both Bayesian clustering and heterozygous sites approaches is included for each sample
Keywords
Mycobacterium tuberculosis; Tuberculosis; Bioinformatics; Epidemiology; Genomic analysis; Mixed infection| Item Type | Dataset |
|---|---|
| Resource Type |
Resource Type Resource Description Dataset Quantitative |
| Capture method | Experiment |
| Date | 14 August 2018 |
| Geographical area covered (offline during plugin upgrade) |
North East South West -9.88973 34.8227 -14.4314 33.3725 |
| Language(s) of written materials | English |
| Creator(s) |
Sobkowiak, B; Glynn, JR; Houben, Rein M. G. J.; Mallard, K; Phelan, JE; Guerra-Assunção, JA; Banda, L; Mzembe, T; Viveiros, M; McNerney, R; Parkhill, J; Crampin, AC and Clark, TG
|
| LSHTM Faculty/Department |
Faculty of Epidemiology and Population Health > Dept of Infectious Disease Epidemiology (-2023) Faculty of Epidemiology and Population Health > Dept of Population Health (2012- ) Faculty of Infectious and Tropical Diseases > Dept of Pathogen Molecular Biology (-2019) |
| Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom |
| Funders |
Project Funder Grant Number Funder URI |
| Date Deposited | 28 Aug 2018 10:49 |
| Last Modified | 26 Mar 2026 11:19 |
| Publisher | Figshare |
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