Data Creators(s) Item Type No Grouping

A

Data for prospective cohort study. (2016) Aibana, Omowunmi, Acharya, Xeno, Huang, Chuan-Chin, Becerra, Mercedes C., Galea, Jerome T., Chiang, Silvia S., Contreras, Carmen, Calderon, Roger, Yataco, Rosa, Velásquez, Gustavo E., Tintaya, Karen, Jimenez, Judith, Lecca, Leonid, Murray, Megan B.

Primary macrophages and J774 cells respond differently to infection with Mycobacterium tuberculosis. (2017) Andreu, Nuria, Phelan, Jody, de Sessions, Paola F, Cliff, Jackie M., Clark, Taane, Hibberd, Martin

Sequence-Based Analysis Uncovers an Abundance of Non-Coding RNA in the Total Transcriptome of Mycobacterium tuberculosis. (2011) Arnvig, Kristine B., Comas, Iñaki, Thomson, Nicholas R., Houghton, Joanna, Boshoff, Helena I., Croucher, Nicholas J., Rose, Graham, Perkins, Timothy T., Parkhill, Julian, Dougan, Gordon, Young, Douglas B.

C

In Silico Spoligotyping. (2012) Coll, Francesc, Mallard, K, Preston, MD, Bentley, S, Parkhill, Julian, Mcnerney, Ruth, Martin, N, Clark, Taane

PolyTB: A web-based resource designed to explore Mycobacterium tuberculosis complex (MTBC) genomic variation at a global scale. (2014) Coll, Francesc, Preston, Mark, Guerra-Assunção, José Afonso, Hill-Cawthorn, Grant, Harris, David, Perdigão, João, Viveiros, Miguel, Portugal, Isabel, Drobniewski, Francis, Gagneux, Sebastien, Glynn, Judith R., Pain, Arnab, Parkhill, Julian, McNerney, Ruth, Martin, Nigel, Clark, Taane

Whole genome sequencing of Mycobacterium tuberculosis strains resistant to D-cycloserine. (2018) Cortes, Teresa, Carvalho, Luiz

Time course RNA-seq of Mycobacterium tuberculosis exposed to nitric oxide. (2017) Cortes, Teresa, Schubert, Olga T., Banaei-Esfahani, Amir, Collins, Ben C., Aebersold, Ruedi, Young, Douglas B.

E

epidemery/subclinical_transmission. (2023) Emery, Jon C, Dodd, Peter J, Banu, Sayera, Frascella, Beatrice, Garden, Frances L, Horton, Katherine C, Hossain, Shahed, Law, Irwin, van Leth, Frank, Marks, Guy B, Nguyen, Hoa Binh, Nguyen, Hai Viet, Onozaki, Ikushi, Quelapio, Maria Imelda D, Richards, Alexandra S, Shaikh, Nabila, Tiemersma, Edine W, White, Richard G, Zaman, Khalequ, Cobelens, Frank, Houben, Rein MGJ

F

SCALE prevalence survey. (2022) Feasey, Helena

H

Diagnostic Accuracy of Lateral Flow Urine LAM Assay for TB Screening of Adults with Advanced Immunosuppression Attending Routine HIV Care in South Africa. (2016) Hanifa, Yasmeen, Fielding, Katherine, Chihota, Violet N., Adonis, Lungiswa, Charalambous, Salome, Karstaedt, Alan, McCarthy, Kerrigan, Nicol, Mark P., Ndlovu, Nontobeko T., Sahid, Faieza, Churchyard, Gavin, Grant, Alison D.

K

Effect of patient-delivered household contact tracing and prevention for tuberculosis: A household cluster-randomised trial in Malawi. Data. (2022) Kaswaswa, Kruger, MacPherson, Peter, Kumwenda, Moses, Mpunga, James, Thindwa, Deus, Nliwasa, Marriott, Mwapasa, Mphatso, Odland, Jon, Tomoka, Tamiwe, Chipungu, Geoffrey, Mukaka, Mavuto, Corbett, Elizabeth L.

L

Methylation and transcription analysis of Mycobacterium tuberculosis. (2018) London School of Hygiene & Tropical Medicine

Sequencing of M/XDR isoaltes from Pakistan. (2021) London School of Hygiene & Tropical Medicine

M

Empiric tuberculosis treatment in South African primary health care facilities - for whom, where, when and why: Implications for the development of tuberculosis diagnostic tests. (2018) McCarthy, Kerrigan, Fielding, Katherine, Churchyard, Gavin J., Grant, Alison D.

NickyMcC/WithinClinics. (2021) McCreesh, Nicky

Gene ontology (GO) enrichment analysis results for significantly upregulated genes at all time points. (2022) Meier, Stuart, Seddon, James A., Maasdorp, Elizna, Kleynhans, Léanie, du Plessis, Nelita, Loxton, Andre G., Malherbe, Stephanus T., Zak, Daniel E., Thompson, Ethan, Duffy, Fergal J., Kaufmann, Stefan H. E., Ottenhoff, Tom H. M., Scriba, Thomas J., Suliman, Sara, Sutherland, Jayne S., Winter, Jill, Kuivaniemi, Helena, Walzl, Gerhard, Tromp, Gerard

KEGG and gene ontology (GO) enrichment analyses for significantly differentially expressed genes between low and high PET score groups for the terms and pathways identified in the main analyses. (2022) Meier, Stuart, Seddon, James A., Maasdorp, Elizna, Kleynhans, Léanie, du Plessis, Nelita, Loxton, Andre G., Malherbe, Stephanus T., Zak, Daniel E., Thompson, Ethan, Duffy, Fergal J., Kaufmann, Stefan H. E., Ottenhoff, Tom H. M., Scriba, Thomas J., Suliman, Sara, Sutherland, Jayne S., Winter, Jill, Kuivaniemi, Helena, Walzl, Gerhard, Tromp, Gerard

KEGG pathway enrichment analysis results for significantly differentially expressed genes at all time points. (2022) Meier, Stuart, Seddon, James A., Maasdorp, Elizna, Kleynhans, Léanie, du Plessis, Nelita, Loxton, Andre G., Malherbe, Stephanus T., Zak, Daniel E., Thompson, Ethan, Duffy, Fergal J., Kaufmann, Stefan H. E., Ottenhoff, Tom H. M., Scriba, Thomas J., Suliman, Sara, Sutherland, Jayne S., Winter, Jill, Kuivaniemi, Helena, Walzl, Gerhard, Tromp, Gerard

List of differentially expressed genes at all time points. (2022) Meier, Stuart, Seddon, James A., Maasdorp, Elizna, Kleynhans, Léanie, du Plessis, Nelita, Loxton, Andre G., Malherbe, Stephanus T., Zak, Daniel E., Thompson, Ethan, Duffy, Fergal J., Kaufmann, Stefan H. E., Ottenhoff, Tom H. M., Scriba, Thomas J., Suliman, Sara, Sutherland, Jayne S., Winter, Jill, Kuivaniemi, Helena, Walzl, Gerhard, Tromp, Gerard

PET scores for the catalysis study specimens. (2022) Meier, Stuart, Seddon, James A., Maasdorp, Elizna, Kleynhans, Léanie, du Plessis, Nelita, Loxton, Andre G., Malherbe, Stephanus T., Zak, Daniel E., Thompson, Ethan, Duffy, Fergal J., Kaufmann, Stefan H. E., Ottenhoff, Tom H. M., Scriba, Thomas J., Suliman, Sara, Sutherland, Jayne S., Winter, Jill, Kuivaniemi, Helena, Walzl, Gerhard, Tromp, Gerard

N

LAMP minimal dataset. (2016) Nliwasa, Marriott, MacPherson, Peter, Chisala, Palesa, Kamdolozi, Mercy, Khundi, Mcewen Joseph, Kaswaswa, Kruger, Mwapasa, Mphatso, Msefula, Chisomo, Sohn, Hojoon, Flach, Clare, Corbett, Elizabeth

O

Significant under expression of the DosR regulon in M. tuberculosis complex lineage 6 in sputum. (2017) Ofori-Anyinam, Boatema, Dolganov, Gregory, Van, Tran, Davis, J Lucian, Walter, Nicholas D, Garcia, Benjamin J, Voskuil, Marty, Fissette, Kristina, Diels, Maren, Driesen, Michèle, Meehan, Conor J, Yeboah-Manu, Dorothy, Coscolla, Mireia, Gagneux, Sebastien, Antonio, Martin, Schoolnik, Gary, Gehre, Florian, de Jong, Bouke C.

P

Evidence for Host-Bacterial Co-evolution via Genome Sequence Analysis of 480 Thai Mycobacterium tuberculosis Lineage 1 Isolates. (2018) Palittapongarnpim, Prasit, Ajawatanawong, Pravech, Viratyosin, Wasna, Smittipat, Nat, Disratthakit, Areeya, Mahasirimongkol, Surakameth, Yanai, Hideki, Yamada, Norio, Nedsuwan, Supalert, Imasanguan, Worarat, Kantipong, Pacharee, Chaiyasirinroje, Boonchai, Wongyai, Jiraporn, Toyo-oka, Licht, Phelan, Jody, Parkhill, Julian, Clark, Taane G., Hibberd, Martin L., Ruengchai, Wuthiwat, Palittapongarnpim, Panawun, Juthayothin, Tada, Tongsima, Sissades, Tokunaga, Katsushi

S

S1 Data File for: "Characterising antibody avidity in individuals of varied Mycobacterium tuberculosis infection status using surface plasmon resonance". (2018) Scriba, Thomas J., Kimuda, Simon G., Biraro, Irene Andia, Bagaya, Bernard S., Raynes, John G., Cose, Stephen

Additional file 1: of Identifying mixed Mycobacterium tuberculosis infections from whole genome sequence data. (2018) Sobkowiak, Benjamin, Glynn, Judith R., Houben, Rein M. G. J., Mallard, Kim, Phelan, Jody E., Guerra-Assunção, José Afonso, Banda, Louis, Mzembe, Themba, Viveiros, Miguel, McNerney, Ruth, Parkhill, Julian, Crampin, Amelia C., Clark, Taane G.

Genomic evidence supporting the clonal expansion of extensively drug-resistant tuberculosis bacteria belonging to a rare proto-Beijing genotype. (2020) Srilohasin, Prapaporn, Prammananan, Therdsak, Faksri, Kiatichai, Phelan, Jody E., Suriyaphol, Prapat, Kamolwat, Phalin, Smithtikarn, Saijai, Disratthakit, Areeya, Regmi, Sanjib Mani, Leechawengwongs, Manoon, Twee-Hee Ong, Rick, Teo, Yik Ying, Tongsima, Sissades, Clark, Taane G., Chaiprasert, Angkana

T

Host Immune Responses Differ between M. africanum- and M. tuberculosis-Infected Patients following Standard Anti-tuberculosis Treatment. (2016) Tientcheu, Leopold, Haks, Mariëlle C., Agbla, Schadrac, Sutherland, Jayne, Adetifa, Ifedayo, Donkor, Simon, Quinten, Edwin, Daramy, Mohammed, Antonio, Martin, Kampmann, Beate, Ottenhoff, Tom H. M., Dockrell, Hazel, Ota, Martin O.

V

TBProfiler for automated calling of the association with drug resistance of variants in Mycobacterium tuberculosis. S1 File. (2022) Verboven, Lennert, Phelan, Jody, Heupink, Tim H., Van Rie, Annelies

TBProfiler for automated calling of the association with drug resistance of variants in Mycobacterium tuberculosis. S2 File. (2022) Verboven, Lennert, Phelan, Jody, Heupink, Tim H., Van Rie, Annelies

W

Source data for graphs. (2021) Wright, Kathryn, de Silva, Kumudika, Plain, Karren M, Purdie, Auriol C, Blair, Tamika A, Duggin, Iain G, Britton, Warwick J, Oehlers, Stefan H

miR-206 target prediction results from TargetScan analysis. (2021) Wright, Kathryn, de Silva, Kumudika, Plain, Karren M, Purdie, Auriol C, Blair, Tamika A, Duggin, Iain G, Britton, Warwick J, Oehlers, Stefan H