List of differentially expressed genes at all time points

Meier, S; Seddon, JA; Maasdorp, E; Kleynhans, L; du Plessis, N; Loxton, AG; Malherbe, ST; Zak, DE; Thompson, E; Duffy, FJ; Kaufmann, SHE; Ottenhoff, THM; Scriba, TJ; Suliman, S

; Sutherland, JS

; Winter, J; Kuivaniemi, H

; Walzl, G and Tromp, G

(2022). List of differentially expressed genes at all time points. [Dataset]. PLOS ONE. https://doi.org/10.1371/journal.pone.0278295.s002

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The statistical metrics presented for each comparison include: log2 fold change (log2FC), average log2 counts per million (logCPM), quasi-likelihood F-statistic (F), p-value (PValue) and false discovery rate (FDR). The non-TB time zero baseline group from the GC6 study were the control group for all comparisons prior to TB diagnosis (i.e., 24, 18, 12 and 6 months before diagnosis) while the Catalysis study healthy controls served as the baseline for the TB comparison.

Keywords

Tuberculosis diagnosis and management; Neutrophils; Tuberculosis; Catalysis; Platelets; Mycobacterium tuberculosis; Gene expression; Gene ontologies

Item Type	Dataset
Resource Type	Resource Type Resource Description Dataset Quantitative
Capture method	Compilation/Synthesis, Summary, Aggregation
Date	1 December 2022
Language(s) of written materials	English
Creator(s)	Meier, S; Seddon, JA; Maasdorp, E; Kleynhans, L; du Plessis, N; Loxton, AG; Malherbe, ST; Zak, DE; Thompson, E; Duffy, FJ; Kaufmann, SHE; Ottenhoff, THM; Scriba, TJ; Suliman, S; Sutherland, JS ; Winter, J; Kuivaniemi, H; Walzl, G and Tromp, G
LSHTM Faculty/Department	MRC Unit The Gambia at LSHTM
Participating Institutions	London School of Hygiene & Tropical Medicine, London, United Kingdom
Date Deposited	12 Dec 2022 10:40
Last Modified	18 Sep 2025 12:26
Publisher	PLOS ONE