List of differentially expressed genes at all time points
Meier, S; Seddon, JA; Maasdorp, E; Kleynhans, L; du Plessis, N; Loxton, AG; Malherbe, ST; Zak, DE; Thompson, E; Duffy, FJ; Kaufmann, SHE; Ottenhoff, THM; Scriba, TJ; Suliman, S
; Sutherland, JS; Winter, J; Kuivaniemi, H; Walzl, G and Tromp, G
(2022).
List of differentially expressed genes at all time points.
[Dataset].
PLOS ONE.
https://doi.org/10.1371/journal.pone.0278295.s002
; Sutherland, JS; Winter, J; Kuivaniemi, H; Walzl, G and Tromp, G
(2022).
List of differentially expressed genes at all time points.
[Dataset].
PLOS ONE.
https://doi.org/10.1371/journal.pone.0278295.s002
The statistical metrics presented for each comparison include: log2 fold change (log2FC), average log2 counts per million (logCPM), quasi-likelihood F-statistic (F), p-value (PValue) and false discovery rate (FDR). The non-TB time zero baseline group from the GC6 study were the control group for all comparisons prior to TB diagnosis (i.e., 24, 18, 12 and 6 months before diagnosis) while the Catalysis study healthy controls served as the baseline for the TB comparison.
Keywords
Tuberculosis diagnosis and management; Neutrophils; Tuberculosis; Catalysis; Platelets; Mycobacterium tuberculosis; Gene expression; Gene ontologies| Item Type | Dataset |
|---|---|
| Resource Type |
Resource Type Resource Description Dataset Quantitative |
| Capture method | Compilation/Synthesis, Summary, Aggregation |
| Date | 1 December 2022 |
| Language(s) of written materials | English |
| Creator(s) |
Meier, S; Seddon, JA; Maasdorp, E; Kleynhans, L; du Plessis, N; Loxton, AG; Malherbe, ST; Zak, DE; Thompson, E; Duffy, FJ; Kaufmann, SHE; Ottenhoff, THM; Scriba, TJ; Suliman, S; Sutherland, JS; Winter, J; Kuivaniemi, H; Walzl, G and Tromp, G
|
| LSHTM Faculty/Department | MRC Unit The Gambia at LSHTM |
| Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom |
| Date Deposited | 12 Dec 2022 10:40 |
| Last Modified | 18 Sep 2025 12:26 |
| Publisher | PLOS ONE |
No files available. Please consult associated links.
