Keywords
Number of items: 131.
A
seabbs/AssessBCGPolicyChange. (2019)
Abbott, Sam
seabbs/EstZoonoticTB. (2019)
Abbott, Sam
seabbs/ModelTBBCGEngland. (2019)
Abbott, Sam
seabbs/getTBinR. (2020)
Abbott, Sam, Bekker-Nielsen Dunbar, Maria, Smith, Arfon
Data for prospective cohort study. (2016)
Aibana, Omowunmi, Acharya, Xeno, Huang, Chuan-Chin, Becerra, Mercedes C., Galea, Jerome T., Chiang, Silvia S., Contreras, Carmen, Calderon, Roger, Yataco, Rosa, Velásquez, Gustavo E., Tintaya, Karen, Jimenez, Judith, Lecca, Leonid, Murray, Megan B.
Genome-wide transcriptional profiling of HIV positive and negative adults with active tuberculosis, latent TB infection and other diseases. (2013)
Anderson, Suzanne T, Coin, Lachlan J, Crampin, Amelia C., Dockrell, Hazel M., Eley, Brian, French, Neil, Heyderman, Robert S., Hibberd, Martin L., Kaforou, Myrsini, Kern, Florian, Langford, Paul R., Levin, M, Ling, Ling, Wilkinson, Robert J., Wright, Victoria J.
Additional file 1 of The socioeconomic impact of tuberculosis on children and adolescents: a scoping review and conceptual framework. (2022)
Atkins, S., Heimo, L, Carter, Daniel J., Ribas Closa, M., Vanleeuw, L., Chenciner, L., Wambi, P., Sidney-Annerstedt, K., Egere, U, Verkuijl, S, Brands, A, Masini, T, Viney, K, Wingfield, T., Lönnroth, K, Boccia, D.
B
Table 1 for "Meta-Analysis Identification of Highly Robust and Differential Immune-Metabolic Signatures of Systemic Host Response to Acute and Latent Tuberculosis in Children and Adults". (2018)
Bah, Saikou Y., Forster, Thorsten, Dickinson, Paul, Kampmann, Beate, Ghazal, Peter
Dataset for the article: Self-reported COVID-19 severity among persons with tuberculosis infection in western Kenya, 2021. (2025)
Barsosio, Hellen C, Tangara, Brian, Ongalo, Joshua, Achieng, Morine, Marlais, Tegwen, McCarthy, Kimberly D, Otieno, Kephas, Wanjiku, Miriam, Matthewman, Julian, Allen, David, Hannan, Luke, Date, Anand, Lesosky, Maia, Kariuki, Simon, Samuels, Aaron M, Drakeley, Chris, ter Kuile, Feiko, Samandari, Taraz
Causes and outcomes of admission and investigation of tuberculosis in adults with advanced HIV in South African hospitals: data from the TB Fast Track trial. (2022)
Beckwith, Peter, Tlali, Mpho, Charalambous, Salome, Churchyard, Gavin J., Fielding, Katherine, Hoffmann, Christopher J., Johnson, Suzanne, Wood, Natalie, Grant, Alison D., Karat, Aaron S.
html
PhyloTrack. (2015)
Benavente, Ernest, Coll, Francesc, Furnham, Nick, Mcnerney, Ruth, Glynn, Judith, Campino, Susana, Pain, Arnab, Mohareb, Fady R, Clark, Taane
Computer Aided Screening for Tuberculosis in Low Resource Environments (CASTLE) trial data. (2024)
Burke, Rachael
code
rachaelmburke/tbcovidblantyre. (2021)
Burke, Rachael
C
ERASE-TB: cross-sectional HIV, malnutrition and non-communicable diseases dataset. (2024)
Calderwood, Claire
description
ERASE-TB: prediction models for Mtb infection dataset. (2025)
Calderwood, Claire, Marambire, Edson, Kranzer, Katharina
description
TB Fast Track patient cost data. (2018)
Candfield, Sophie, Mukora, Rachel, Monkwe, Sefalane, Charalambous, Salome, Sweeney, Sedona, Grant, Alison D., Fielding, Katherine, Vassall, Anna
html
Data supporting "Prevalence of subclinical pulmonary tuberculosis and its association with HIV in household contacts of tuberculosis in two South African provinces: analysis of a cluster-randomised trial". (2023)
Carter, Naomi, Webb, Emily, Lebina, Limakatso, Motsomi, Kegaugetswe, Bosch, Zama, Martinson, Neil, MacPherson, Peter
description
Journey of the tuberculosis patients in India from onset of symptom till one-year post-treatment. Complete dataset. (2023)
Chatterjee, Susmita, Das, Palash, Shikhule, Aaron, Munje, Radha, Vassall, Anna
Catastrophic costs for tuberculosis patients in India: Impact of methodological choices - Complete dataset. (2024)
Chatterjee, Susmita, Das, Palash, Stallworthy, Guy, Bhambure, Gayatri, Munje, Radha, Vassall, Anna
Transcriptome data for bacterial and fungal keratitis compared to cadaver cornea. (2014)
Chidambaram, Jaya D., Bauer, Julien, Holland, Martin, Burton, Matthew, Prajna, Namperumalsamy V, Srikanthi, Palepu, Lalitha, Prajna, Elakkiya, Shanmugam, Lanjewar, Shruti
Genome-wide mutational biases fuel transcriptional diversity in the Mycobacterium tuberculosis complex. (2019)
Chiner-Oms, Álvaro, Berney, Michael, Boinett, Christine, González-Candelas, Fernando, Young, Douglas B, Gagneux, Sebastien, Jacobs Jr, William R., Parkhill, Julian, Cortes, Teresa, Comas, Iñaki
TBVAX Model. (2022)
Clark, Rebecca, Mukandavire, Christinah, Weerasuriya, Chathika, Bakker, Roelof, White, Richard G
Comparison of M. tuberculosis and M. bovis BCG in diluted whole blood cultures. (2015)
Cliff, Jackie, Cho, Jang-Eun, Lee, Ji-Sook, Ronacher, Katharina, King, Elizabeth, van Helden, Paul, Walzl, Gerhard, Dockrell, Hazel
Excessive Cytolytic Responses Predict Tuberculosis Relapse After Apparently Successful Treatment. (2015)
Cliff, Jackie, Cho, Jang-Eun, Lee, Ji-Sook, Ronacher, Katharina, King, Elizabeth, van Helden, Paul, Walzl, Gerhard, Dockrell, Hazel
Tuberculosis Patients Blood Gene Expression Through Treatment. (2012)
Cliff, Jackie, Lee, Ji-Sook, Constantinou, Nicholas, Cho, Jang-Eun, Clark, Taane G., Ronacher, Katharina, King, Elizabeth C., Lukey, Pauline T., Duncan, Ken, Van Helden, Paul D., Walzl, Gerhard, Dockrell, Hazel M.
Tuberculosis Patients Blood Gene Expression Through Treatment (cured and end-of-treatment patients). (2012)
Cliff, Jackie, Lee, Ji-Sook, Constantinou, Nicholas, Cho, Jang-Eun, Clark, Taane G., Ronacher, Katharina, King, Elizabeth C., Lukey, Pauline T., Duncan, Ken, Van Helden, Paul D., Walzl, Gerhard, Dockrell, Hazel M.
In Silico Spoligotyping. (2012)
Coll, Francesc, Mallard, K, Preston, MD, Bentley, S, Parkhill, Julian, Mcnerney, Ruth, Martin, N, Clark, Taane
TB Profiler. (2015)
Coll, Francesc, Mcnerney, Ruth, Preston, Mark D., Guerra-assunção, José Afonso, Warry, Andrew, Hill-Cawthorne, Grant, Mallard, Kim, Nair, Mridul, Miranda, Anabela, Alves, Adriana, Perdigão, João, Viveiros, Miguel, Portugal, Isabel, Hasan, Zahra, Hasan, Rumina, Glynn, Judith, Martin, Nigel, Pain, Arnab, Clark, Taane
folder_zip
PolyTB: A web-based resource designed to explore Mycobacterium tuberculosis complex (MTBC) genomic variation at a global scale. (2014)
Coll, Francesc, Preston, Mark, Guerra-Assunção, José Afonso, Hill-Cawthorn, Grant, Harris, David, Perdigão, João, Viveiros, Miguel, Portugal, Isabel, Drobniewski, Francis, Gagneux, Sebastien, Glynn, Judith R., Pain, Arnab, Parkhill, Julian, McNerney, Ruth, Martin, Nigel, Clark, Taane
Infection prevention and control for drug-resistant tuberculosis in South Africa in the era of decentralised care: A whole systems approach. Research Question 1 - describe IPC policy and systems context. (2022)
Colvin, Christopher, Swartz, Alison, Kallon, Idriss, Kielmann, Karina, Macgregor, Hayley
Umoya omuhle: Infection prevention and control for drug-resistant tuberculosis in South Africa in the era of decentralised care: A whole systems approach. Research Questions 3 and 4_KwaZulu Natal. (2022)
Colvin, Christopher, Swartz, Alison, Kallon, Idriss, Kielmann, Karina, Macgregor, Hayley
Dataset and dictionary for inpatient mortality in a TB ward in the Philippines. (2019)
Cox, Sharon E.
Co-morbidities (malnutrition, diabetes, anaemia, HIV, hypertension) and quality of life in persons with tuberculosis in the Philippines. (2020)
Cox, Sharon E., White, Laura V., Faguer, Benjamin, Edwards, Tansy, Lee, Nathaniel, Solon, Juan, Ariyoshi, Koya, Castro, Mary Christine, Saludar, Naomi R., Saito, Nobuo, Calapis, Rugaiya W
Patterns of non-communicable comorbidities at start of tuberculosis treatment in three regions of the Philippines: St-ATT cohort baseline data. (2021)
Cox, Sharon, Faguer, Benjamin
description
D
Performance of computer-aided chest radiography for detection of TB in a community-based multimorbidity cohort in rural KwaZulu-Natal. (2020)
Deenan, Pillay, Koole, Olivier, Wong, Emily
petedodd/NotTB. (2021)
Dodd, Peter J
Social contact data for Zambia and South Africa (CODA dataset). (2019)
Dodd, Peter J, Looker, Clare, Plumb, Ian D., Bond, Virginia, Schaap, Ab, Shanaube, Kwame, Muyoyeta, Monde, Vynnycky, Emilia, Godfrey-faussett, Peter, Corbett, Elizabeth L., Beyers, Nulda, Ayles, Helen, White, Richard G.
Age- and Sex-Specific Social Contact Patterns and Incidence of Mycobacterium tuberculosis Infection: Interview Questionnaire. (2015)
Dodd, Peter J, Looker, Clare, Plumb, Ian D., Bond, Virginia, Schaap, Ab, Shanaube, Kwame, Muyoyeta, Monde, Vynnycky, Emilia, Godfrey-faussett, Peter, Corbett, Elizabeth, Beyers, Nulda, Ayles, Helen, White, Richard
E
Impaired resolution of blood transcriptomes through tuberculosis treatment with diabetes comorbidity. (2023)
Eckold, Clare, van Doorn, Cassandra LR, Dockrell, Hazel, Ottenhoff, Tom HM, Vianello, Eleanora, Cliff, Jacqueline M
epidemery/subclinical_transmission. (2023)
Emery, Jon C, Dodd, Peter J, Banu, Sayera, Frascella, Beatrice, Garden, Frances L, Horton, Katherine C, Hossain, Shahed, Law, Irwin, van Leth, Frank, Marks, Guy B, Nguyen, Hoa Binh, Nguyen, Hai Viet, Onozaki, Ikushi, Quelapio, Maria Imelda D, Richards, Alexandra S, Shaikh, Nabila, Tiemersma, Edine W, White, Richard G, Zaman, Khalequ, Cobelens, Frank, Houben, Rein MGJ
F
Search strategies for "Evidence for the use of administrative controls to reduce the transmission of Mycobacterium tuberculosis in healthcare settings: a systematic review". (2017)
Falconer, Jane
description
SCALE prevalence survey. (2022)
Feasey, Helena
Data set for describing resistance and identifying risk factors for resistance to Mycobacterium tuberculosis, among highly TB exposed gold miners in South Africa. (2021)
Fielding, Katherine
description
Data set for the comparison of the performance of QuantiFERON-TB Gold Plus with QuantiFERON-T Gold in-tube among highly TB exposed gold miners in South Africa. (2020)
Fielding, Katherine
description
PBMC expression profiles of BCG vaccine protected infants and of BCG vaccinated infants who develop tuberculosis disease. (2014)
Fletcher, Helen A., Filali-Mouhim, Ali, Nemes, Elisa, Hawkridge, Anthony, Keyser, Alana, Njikan, Samuel, Hatherill, Mark, Scriba, Thomas J., Abel, Brian, Kagina, Benjamin M., Veldsman, Ashley, Agudelo, Nancy Marín, Kaplan, Gilla, Hussey, Gregory D., Sekaly, Rafick-Pierre, Hanekom, Willem A.
Health survey form for human resources and digital adherence technologies. (2024)
Foster, Nicola, Belachew, Mahilet, Sahile, Mamush, Gadissa, Demekech, Abdurhman, Tofik, Bedru, Ahmed, van Rest, Job, van Kalmthout, Kristian, Jerene, Degu, Fielding, Katherine, Tadesse, Amare W.
description
XPHACTOR cross-sectional patient cost dataset. (2018)
Foster, Nicola, Hanifa, Yasmeen, Pillai, Natasha, Roycent, Tumbare, Fielding, Katherine, Vassall, Anna, Grant, Alison D.
Viet Nam tuberculosis prevalence survey: equity analysis code. (2022)
Foster, Nicola, Nguyen, Hai V, Nguyen, Nhung V, Nguyen, Hoa B, Cobelens, Frank, Tiemersma, Edine W, Quaife, Matthew, Houben, Rein
description
G
Identification of Reduced Host Transcriptomic Signatures for Tuberculosis Disease and Digital PCR-Based Validation and Quantification. (2021)
Gliddon, Harriet D., Kaforou, Myrsini, Alikian, Mary, Habgood-Coote, Dominic, Zhou, Chenxi, Oni, Tolu, Anderson, Suzanne T., Brent, Andrew J., Crampin, Amelia C., Eley, Brian, Heyderman, Robert, Kern, Florian, Langford, Paul R., Ottenhoff, Tom H. M., Hibberd, Martin L., French, Neil, Wright, Victoria J., Dockrell, Hazel M., Coin, Lachlan J., Wilkinson, Robert J., Levin, Michael
Dataset codebook for a 30-year population-based study examining the contribution of remote M.tuberculosis infection to tuberculosis. (2023)
Glynn, Judith R.
description
Data for: “BCG revaccination in Malawi: 30-year follow-up of a large, randomised, double-blind placebo-controlled trial”. (2021)
Glynn, Judith R., Fielding, Katherine, Mzembe, Themba, Sichali, Lifted, Banda, Louis, Mclean, Estelle, Kanjala, Chifundo, Crampin, Amelia C., Ponnighaus, Jorg, Warndorff, David, Fine, Paul
description
Infection prevention and control for drug-resistant tuberculosis in South Africa in the era of decentralised care:a whole systems approach. (2022)
Govender, Indira
Data from: Transmission of multidrug-resistant and drug-susceptible tuberculosis within households: a prospective cohort study. (2015)
Grandjean, Louis, Gilman, Robert H., Martin, Laura, Soto, Esther, Castro, Beatriz, Lopez, Sonia, Coronel, Jorge, Castillo, Edith, Alarcon, Valentina, Lopez, Virginia, San Miguel, Angela, Quispe, Neyda, Asencios, Luis, Dye, Christopher, Moore, David
Incidence of tuberculosis infection among adolescents in rural KwaZulu-Natal, South Africa, 2017-2018. (2019)
Grant, Alison D., Baisley, Kathy, Mzembe, Themba, Edwards, Anita
Qualitative and Quantitative Data for Tuberculosis Infection Prevention and Control in KwaZulu-Natal and Western Cape, South Africa, 2018-2021. (2022)
Grant, Alison D., Kielmann, Karina
Evaluation of ultrasound for screening and diagnosis of pulmonary tuberculosis, KwaZulu Natal, South Africa, 2019-20. (2022)
Grant, Alison D., Wong, Emily, Leslie, Al, Karat, Aaron, Fentress, Matthew, Maharaj, Priya, Henwood, Patricia
Additional file 1 of GenTB: A user-friendly genome-based predictor for tuberculosis resistance powered by machine learning. (2021)
Gröschel, Matthias I., Owens, Martin, Freschi, Luca, Vargas, Roger, Marin, Maximilian G., Phelan, Jody, Iqbal, Zamin, Dixit, Avika, Farhat, Maha R.
Mortality predictor score in hospitalised patients HIV-associated TB in Africa dataset. (2019)
Gupta-Wright, Ankur
html
H
Diagnostic Accuracy of Lateral Flow Urine LAM Assay for TB Screening of Adults with Advanced Immunosuppression Attending Routine HIV Care in South Africa. (2016)
Hanifa, Yasmeen, Fielding, Katherine, Chihota, Violet N., Adonis, Lungiswa, Charalambous, Salome, Karstaedt, Alan, McCarthy, Kerrigan, Nicol, Mark P., Ndlovu, Nontobeko T., Sahid, Faieza, Churchyard, Gavin, Grant, Alison D.
Data for: "The utility of repeat Xpert MTB/RIF testing to diagnose tuberculosis in HIV-positive adults with initial negative result". (2016)
Hanifa, Yasmeen, Fielding, Katherine, Grant, Alison D., Churchyard, Gavin J.
folder_zip
Additional file 1: of Comparing research investment to United Kingdom institutions and published outputs for tuberculosis, HIV and malaria: a systematic analysis across 1997–2013. (2015)
Head, Michael Gavin, Fitchett, Joseph, Derrick, Gemma, Wurie, Fatima B, Meldrum, Jonathan, Kumari, Nina, Beattie, Benjamin, Counts, Christopher J, Atun, Rifat
grid_on
User perspectives and preferences on a novel TB LAM diagnostic (Fujifilm SILVAMP TB LAM) – a qualitative study in Malawi and Zambia [data]. (2022)
Herrmann, Yannis, Lainati, Federica, del Mar Castro, María, Mwamba, Chanda, Kumwenda, Moses, Muyoyeta, Monde, Broger, Tobias, Heinrich, Norbert, Olbrich, Lisa, Corbett, Elizabeth L., McMahon, Shannon, Engel, Nora, Denkinger, Claudia
A Bayesian approach to understanding gender differences in tuberculosis disease burden. (2018)
Horton, Katherine C, Sumner, Tom, Houben, Rein M G J, Corbett, Elizabeth L, White, Richard G
Financial barriers and coping strategies: a qualitative study of accessing multidrug-resistant tuberculosis and tuberculosis care in Yunnan, China. (2017)
Hutchison, Coll, Khan, Mishal, Yoong, J., Coker, Richard
description
K
Additional file 1 of Barriers to and enablers of uptake of antiretroviral therapy in integrated HIV and tuberculosis treatment programmes in sub-Saharan Africa: a systematic review and meta-analysis. (2021)
Kadia, Benjamin Momo, Dimala, Christian Akem, Fongwen, Noah T., Smith, Adrian D.
Autopsy Prevalence of Tuberculosis and Other Potentially Treatable Infections among Adults with Advanced HIV Enrolled in Out-Patient Care in South Africa: Lesedi Kamoso study data. (2016)
Karat, Aaron S., Omar, Tanvier, von Gottberg, Anne, Tlali, Mpho, Chihota, Violet N., Churchyard, Gavin J., Fielding, Katherine L., Johnson, Suzanne, Martinson, Neil A., McCarthy, Kerrigan, Wolter, Nicole, Wong, Emily B., Charalambous, Salome, Grant, Alison D.
description
Measuring mortality due to HIV-associated tuberculosis among adults in South Africa: comparing verbal autopsy, minimally-invasive autopsy, and research data. Data from the Lesedi Kamoso study. (2016)
Karat, Aaron, Tlali, Mpho, Fielding, Katherine, Charalambous, Salome, Chihota, Violet N., Churchyard, Gavin J., Hanifa, Yasmeen, Johnson, Suzanne, McCarthy, Kerrigan, Martinson, Neil A., Omar, Tanvier, Kahn, Kathleen, Chandramohan, Daniel, Grant, Alison D.
description
Effect of patient-delivered household contact tracing and prevention for tuberculosis: A household cluster-randomised trial in Malawi. Data. (2022)
Kaswaswa, Kruger, MacPherson, Peter, Kumwenda, Moses, Mpunga, James, Thindwa, Deus, Nliwasa, Marriott, Mwapasa, Mphatso, Odland, Jon, Tomoka, Tamiwe, Chipungu, Geoffrey, Mukaka, Mavuto, Corbett, Elizabeth L.
Antiretroviral therapy initiation and outcomes of hospitalized HIV-infected patients in Uganda - An evaluation of the HIV test and treat strategy. Health care worker interview guide. (2022)
Katende, Andrew, Nakiyingi, Lydia, Andia-Biraro, Irene, Katairo, Thomas, Muhumuza, Richard, Ssemata, Andrew S., Nsereko, Christopher, Semitala, Fred C., Meya, David B.
Antiretroviral therapy initiation and outcomes of hospitalized HIV-infected patients in Uganda-An evaluation of the HIV test and treat strategy. Stata data set. (2022)
Katende, Andrew, Nakiyingi, Lydia, Andia-Biraro, Irene, Katairo, Thomas, Muhumuza, Richard, Ssemata, Andrew S., Nsereko, Christopher, Semitala, Fred C., Meya, David B.
Data for: Karachi adult tuberculosis prevalence and child Mycobacterium tuberculosis infection survey, 2018-2019. (2024)
Khan, Palwasha Y.
html
Code for "The relative fitness of drug resistant Mycobacterium tuberculosis: a modelling study of household transmission in Lima, Peru". (2018)
Knight, Gwen
Follow up time from The relative fitness of drug-resistant Mycobacterium tuberculosis: a modelling study of household transmission in Peru. (2018)
Knight, Gwenan M., Zimic, Mirko, Funk, Sebastian, Gilman, Robert H., Friedland, Jon S., Grandjean, Louis
Durations of asymptomatic, symptomatic, and care-seeking phases of tuberculosis disease with a Bayesian analysis of prevalence survey and notification data. (2021)
Ku, Chu-Chang, MacPherson, Peter, Khundi, McEwen, Nzawa Soko, Rebecca H., Feasey, Helena R. A., Nliwasa, Marriott, Horton, Katherine C., Corbett, Elizabeth L., Dodd, Peter J.
Supporting data for: "The social determinants of national tuberculosis incidence rates in 116 countries: a longitudinal ecological study between 2005– 2015". (2019)
Költringer, Fiona A, Rudgard, William E, Annerstedt, Kristi Sidney, Boccia, Delia, Carter, Daniel
L
TB WGS Tanzania. (2020)
London School of Hygiene & Tropical Medicine
Factors associated with tuberculosis infection, and with anti-mycobacterial immune responses, among five year olds BCG-immunised at birth in Entebbe, Uganda. (2014)
Lule, Swaib Abubaker, Mawa, Patrice, Nkurunungi, Gyaviira, Nampijja, Margaret, Kizito, Dennison, Akello, Florence, Muhangi, Lawrence, Elliott, Alison, Webb, Emily L
M
BlantyreTBEpi. (2018)
MacPherson, Peter, Khundi, McEwen, Nliwasa, Marriott, Choko, Augustine T., Phiri, Vincent K., Webb, Emily L., Dodd, Peter J., Cohen, Ted, Harris, Rebecca, Corbett, Elizabeth L.
Additional file 1 of Qualitative study of patient experiences of mental distress during TB investigation and treatment in Zambia. (2022)
Mainga, Tila, Gondwe, M., Mactaggart, Islay, Stewart, R. C., Shanaube, K., Ayles, Helen, Bond, Virginia
Data from: Perceptions of research bronchoscopy in Malawian adults with pulmonary tuberculosis: a cross-sectional study. (2016)
McCallum, Andrew D., Nyirenda, Deborah, Lora, Wezzie, Khoo, Saye H., Sloan, Derek J., Mwandumba, Henry C., Desmond, Nicola, Davies, Geraint R.
Empiric tuberculosis treatment in South African primary health care facilities - for whom, where, when and why: Implications for the development of tuberculosis diagnostic tests. (2018)
McCarthy, Kerrigan, Fielding, Katherine, Churchyard, Gavin J., Grant, Alison D.
Additional file 1 of Inequalities in the impact of COVID-19-associated disruptions on tuberculosis diagnosis by age and sex in 45 high TB burden countries. (2022)
McQuaid, C. Finn, Henrion, Marc Y. R., Burke, Rachael M., MacPherson, Peter, Nzawa-Soko, Rebecca, Horton, Katherine C.
Model code for "An explanation for the low proportion of tuberculosis that results from transmission between household and known social contacts". (2017)
Mccreesh, Nicky
description
KEGG and gene ontology (GO) enrichment analyses for significantly differentially expressed genes between low and high PET score groups for the terms and pathways identified in the main analyses. (2022)
Meier, Stuart, Seddon, James A., Maasdorp, Elizna, Kleynhans, Léanie, du Plessis, Nelita, Loxton, Andre G., Malherbe, Stephanus T., Zak, Daniel E., Thompson, Ethan, Duffy, Fergal J., Kaufmann, Stefan H. E., Ottenhoff, Tom H. M., Scriba, Thomas J., Suliman, Sara, Sutherland, Jayne S., Winter, Jill, Kuivaniemi, Helena, Walzl, Gerhard, Tromp, Gerard
KEGG pathway enrichment analysis results for significantly differentially expressed genes at all time points. (2022)
Meier, Stuart, Seddon, James A., Maasdorp, Elizna, Kleynhans, Léanie, du Plessis, Nelita, Loxton, Andre G., Malherbe, Stephanus T., Zak, Daniel E., Thompson, Ethan, Duffy, Fergal J., Kaufmann, Stefan H. E., Ottenhoff, Tom H. M., Scriba, Thomas J., Suliman, Sara, Sutherland, Jayne S., Winter, Jill, Kuivaniemi, Helena, Walzl, Gerhard, Tromp, Gerard
List of differentially expressed genes at all time points. (2022)
Meier, Stuart, Seddon, James A., Maasdorp, Elizna, Kleynhans, Léanie, du Plessis, Nelita, Loxton, Andre G., Malherbe, Stephanus T., Zak, Daniel E., Thompson, Ethan, Duffy, Fergal J., Kaufmann, Stefan H. E., Ottenhoff, Tom H. M., Scriba, Thomas J., Suliman, Sara, Sutherland, Jayne S., Winter, Jill, Kuivaniemi, Helena, Walzl, Gerhard, Tromp, Gerard
PET scores for the catalysis study specimens. (2022)
Meier, Stuart, Seddon, James A., Maasdorp, Elizna, Kleynhans, Léanie, du Plessis, Nelita, Loxton, Andre G., Malherbe, Stephanus T., Zak, Daniel E., Thompson, Ethan, Duffy, Fergal J., Kaufmann, Stefan H. E., Ottenhoff, Tom H. M., Scriba, Thomas J., Suliman, Sara, Sutherland, Jayne S., Winter, Jill, Kuivaniemi, Helena, Walzl, Gerhard, Tromp, Gerard
Validation of Correlates of Risk of TB Disease in High Risk Populations (CORTIS-HR) Study: Public, subject-level RISK11 signature scores and metadata. (2021)
Mendelsohn, Simon C, Fiore-Gartland, Andrew, Penn-Nicholson, Adam, Mulenga, Humphrey, Kimbung, Stanley, Borate, Bhavesh, Hadley, Katie, Hikuam, Chris, Musvosvi, Munyaradzi, Bilek, Nicole, Erasmus, Mzwandile, Jaxa, Lungisa, Raphela, Rodney, Nombida, Onke, Kaskar, Masooda, Sumner, Tom, White, Richard G, Innes, Craig, Brumskine, William, Hiemstra, Andriëtte, Malherbe, Stephanus T, Hassan-Moosa, Razia, Tameris, Michèle, Walzl, Gerhard, Naidoo, Kogieleum, Churchyard, Gavin, Scriba, Thomas J, Hatherill, Mark
Mid-upper arm circumference predicts death in adult patients admitted to a TB ward in the Philippines: A prospective cohort study. (2019)
Mota, Joao Felipe, Lee, Nathaniel, White, Laura V., Marin, Flora P., Saludar, Naomi R., Solante, Marietta B., Tactacan-Abrenica, Rosario J. C., Calapis, Rugaiya W., Suzuki, Motoi, Saito, Nobuo, Ariyoshi, Koya, Parry, Christopher M., Edwards, Tansy, Cox, Sharon E.
N
Mongolia MDR-TB contact e-registry ODK 2017. (2020)
Naker, Kush
Detection of a historic reservoir of bedaquiline/clofazimine resistance-associated variants in Mycobacterium tuberculosis. (2024)
Nimmo, Camus, Ortiz, Arturo Torres, Tan, Cedric C. S., Pang, Juanita, Acman, Mislav, Millard, James, Padayatchi, Nesri, Grant, Alison D., O’Donnell, Max, Pym, Alex, Brynildsrud, Ola B., Eldholm, Vegard, Grandjean, Louis, Didelot, Xavier, Balloux, François, van Dorp, Lucy
LAMP minimal dataset. (2016)
Nliwasa, Marriott, MacPherson, Peter, Chisala, Palesa, Kamdolozi, Mercy, Khundi, Mcewen Joseph, Kaswaswa, Kruger, Mwapasa, Mphatso, Msefula, Chisomo, Sohn, Hojoon, Flach, Clare, Corbett, Elizabeth
P
Evidence for Host-Bacterial Co-evolution via Genome Sequence Analysis of 480 Thai Mycobacterium tuberculosis Lineage 1 Isolates. (2018)
Palittapongarnpim, Prasit, Ajawatanawong, Pravech, Viratyosin, Wasna, Smittipat, Nat, Disratthakit, Areeya, Mahasirimongkol, Surakameth, Yanai, Hideki, Yamada, Norio, Nedsuwan, Supalert, Imasanguan, Worarat, Kantipong, Pacharee, Chaiyasirinroje, Boonchai, Wongyai, Jiraporn, Toyo-oka, Licht, Phelan, Jody, Parkhill, Julian, Clark, Taane G., Hibberd, Martin L., Ruengchai, Wuthiwat, Palittapongarnpim, Panawun, Juthayothin, Tada, Tongsima, Sissades, Tokunaga, Katsushi
Whole genome sequences for M.tuberculosis isolates from the TDR strain bank. (2015)
Phelan, Jody, Coll, Francesc, Mcnerney, Ruth, Ascher, David B., Pires, Douglas E. V., Furnham, Nick, Coeck, Nele, Hill-Cawthorne, Grant A., Nair, Mridul B., Mallard, Kim, Ramsay, Andrew, Campino, Susana, Hibberd, Martin, Pain, Arnab, Rigouts, Leen, Clark, Taane
description
Additional file 1: of Integrating informatics tools and portable sequencing technology for rapid detection of resistance to anti-tuberculous drugs. (2019)
Phelan, Jody, O’Sullivan, Denise M, Machado, Diana, Ramos, Jorge, Oppong, Yaa EA, Campino, Susana, O’Grady, Justin, McNerney, Ruth, Hibberd, Martin L, Viveiros, Miguel, Huggett, Jim F, Clark, Taane G.
Data for: "Variation in missed doses and reasons for discontinuation of anti-tuberculosis drugs during hospital treatment for drug-resistant tuberculosis in South Africa". (2023)
Pietersen, Elize, Anderson, Kim, Cox, Helen, Dheda, Keertan, Bian, Aihua, Shepherd, Bryan E, Sterling, Timothy R, Warren, Robin M, van der Heijden, Yuri F
Vukuzazi Machine Learning Chest X-ray project among individuals aged 15 years and above in rural KwaZulu Natal, South Africa, 2018. (2018)
Pillay, Deenan, Koole, Olivier, Wong, Emily
Costs incurred by people receiving TB treatment in low- and middle-income countries: a meta-regression analysis. (2023)
Portnoy, Allison, Yamanaka, Takuya, Nguhiu, Peter, Nishikiori, Nobuyuki, Garcia Baena, Inés, Floyd, Katherine, Menzies, Nicolas A
Data from: Dynamics of cough frequency in adults undergoing treatment for pulmonary tuberculosis. (2017)
Proaño, Alvaro, Bravard, Marjory A., López, José W., Lee, Gwenyth O., Bui, David, Datta, Sumona, Comina, Germán, Zimic, Mirko, Coronel, Jorge, Caviedes, Luz, Cabrera, José L., Salas, Antonio, Ticona, Eduardo, Vu, Nancy M., Kirwan, Daniela E., Loader, Maria-Cristina I., Friedland, Jon S., Moore, David A. J., Evans, Carlton A., Tracey, Brian H., Gilman, Robert H.
R
Clinic attendance by sex and HIV status in rural South Africa. (2021)
Randera-Rees, Safiyya, Safari, Wende Clarence, Gareta, Dickman, Herbst, Kobus, Baisley, Kathy, Grant, Alison D.
Selection bias in multidrug-resistant tuberculosis cohort studies assessing sputum culture conversion. S1 Data. (2022)
Rodriguez, Carly A., Lodi, Sara, Horsburgh, C. Robert, Bastard, Mathieu, Hewison, Cathy, Huerga, Helena, Khan, Munira, Khan, Palwasha Y., Khan, Uzma, Oyewusi, Lawrence, Padayachee, Shrivani, Mitnick, Carole D., Franke, Molly F.
S
Clinic attendance by sex and HIV status in rural South Africa - Data and Code. (2021)
Safari, Wendy, Baisley, Kathy
description
Where will it end? Pathways to care and catastrophic costs following negative TB evaluation in Uganda. Raw data for analysis. (2021)
Samuels, Thomas H. A., Shete, Priya B., Ojok, Chris, Nalugwa, Talemwa, Farr, Katherine, Turyahabwe, Stavia, Katamba, Achilles, Cattamanchi, Adithya, Moore, David A. J.
Dataset for: "Tuberculosis prevalence after four years of population-wide systematic TB symptom screening and universal testing and treatment for HIV in the HPTN 071 (PopART) community-randomised trial in Zambia and South Africa: findings from the TREATS study". (2023)
Schaap, Albertus, Floyd, Sian
description
Data for: "Impact of micro- and macronutrient status on the incidence of tuberculosis: an examination of an African cohort initiating antiretroviral therapy". (2023)
Schwalb, Alvaro
code
Data for: "Travel and tuberculosis in migrants". (2023)
Schwalb, Alvaro
description
S1 Data File for: "Characterising antibody avidity in individuals of varied Mycobacterium tuberculosis infection status using surface plasmon resonance". (2018)
Scriba, Thomas J., Kimuda, Simon G., Biraro, Irene Andia, Bagaya, Bernard S., Raynes, John G., Cose, Stephen
RISK11 signature scores for the biomarker-guided tuberculosis preventive therapy (CORTIS) randomised controlled trial. (2021)
Scriba, Thomas J, Fiore-Gartland, Andrew, Penn-Nicholson, Adam, Mulenga, Humphrey, Kimbung Mbandi, Stanley, Borate, Bhavesh, Mendelsohn, Simon C, Hadley, Katie, Hikuam, Chris, Kaskar, Masooda, Musvosvi, Munyaradzi, Bilek, Nicole, Self, Steven, Sumner, Tom, White, Richard G, Erasmus, Mzwandile, Jaxa, Lungisa, Raphela, Rodney, Innes, Craig, Brumskine, William, Hiemstra, Andriëtte, Malherbe, Stephanus T, Hassan-Moosa, Razia, Tameris, Michèle, Walzl, Gerhard, Naidoo, Kogieleum, Churchyard, Gavin, Hatherill, Mark
RISK11 signature scores for the biomarker-guided tuberculosis preventive therapy (CORTIS) randomised controlled trial. (2021)
Scriba, Thomas J, Fiore-Gartland, Andrew, Penn-Nicholson, Adam, Mulenga, Humphrey, Kimbung Mbandi, Stanley, Borate, Bhavesh, Mendelsohn, Simon C, Hadley, Katie, Hikuam, Chris, Kaskar, Masooda, Musvosvi, Munyaradzi, Bilek, Nicole, Self, Steven, Sumner, Tom, White, Richard G, Erasmus, Mzwandile, Jaxa, Lungisa, Raphela, Rodney, Innes, Craig, Brumskine, William, Hiemstra, Andriëtte, Malherbe, Stephanus T, Hassan-Moosa, Razia, Tameris, Michèle, Walzl, Gerhard, Naidoo, Kogieleum, Churchyard, Gavin, Hatherill, Mark
Additional file 1: of Identifying mixed Mycobacterium tuberculosis infections from whole genome sequence data. (2018)
Sobkowiak, Benjamin, Glynn, Judith R., Houben, Rein M. G. J., Mallard, Kim, Phelan, Jody E., Guerra-Assunção, José Afonso, Banda, Louis, Mzembe, Themba, Viveiros, Miguel, McNerney, Ruth, Parkhill, Julian, Crampin, Amelia C., Clark, Taane G.
Data from: Human cytomegalovirus epidemiology and relationship to tuberculosis and cardiovascular disease risk factors in a rural Ugandan cohort. (2018)
Stockdale, Lisa, Nash, Stephen, Nalwoga, Angela, Painter, Hannah, Asiki, Gershim, Fletcher, Helen, Newton, Robert
Mathematical model projections for: "Application of provincial data in mathematical modelling to inform sub-national tuberculosis program decision-making in South Africa". (2018)
Sumner, Tom
folder_zip
tomsumner/Latency_Model_Comparison_Public. (2020)
Sumner, Tom
tomsumner/Variance_SA_TB. (2022)
Sumner, Tom
Value TB Dataset: costs per direct & ancillary service. (2021)
Sweeney, Sedona, Cunnama, Lucy, Laurence, Yoko, Garcia Baena, Ines, Kairu, Angela, Minyewelet, Marta, Eyob, Hiwet, Chatterjee, Susmita, Toshniwal, Manoj, Chikovani, Ivdity, Shingelia, Natia, Capeding, Theo Juhani, Vassall, Anna
Value TB Dataset: costs per intervention. (2021)
Sweeney, Sedona, Cunnama, Lucy, Laurence, Yoko, Garcia Baena, Ines, Kairu, Angela, Minyewelet, Marta, Eyob, Hiwet, Chatterjee, Susmita, Toshniwal, Manoj, Chikovani, Ivdity, Shingelia, Natia, Capeding,, Theo Juhani, Vassall, Anna
TB-Practecal economic evaluation sub-study: Data collection tools. (2020)
Sweeney, Sedona, Kitson, Nichola
picture_as_pdf
T
S1 Data for: "Is There a Need for Viral Load Testing to Assess Treatment Failure in HIV-Infected Patients Who Are about to Change to Tenofovir-Based First-Line Antiretroviral Therapy? Programmatic Findings from Myanmar". (2016)
Thiha, Nay, Chinnakali, Palanivel, Harries, Anthony D., Shwe, Myint, Balathandan, Thanumalaya Perumal, Thein Than Tun, Sai, Das, Mrinalini, Tin, Htay Htay, Yi, Yi, Babin, François Xavier, Lwin, Thi Thi, Clevenbergh, Philippe Albert
Host Immune Responses Differ between M. africanum- and M. tuberculosis-Infected Patients following Standard Anti-tuberculosis Treatment. (2016)
Tientcheu, Leopold, Haks, Mariëlle C., Agbla, Schadrac, Sutherland, Jayne, Adetifa, Ifedayo, Donkor, Simon, Quinten, Edwin, Daramy, Mohammed, Antonio, Martin, Kampmann, Beate, Ottenhoff, Tom H. M., Dockrell, Hazel, Ota, Martin O.
Data for: Coverage and effectiveness of conditional cash transfer for people with drug resistant tuberculosis in Zimbabwe. (2023)
Timire, Collins
description
Dataset: Cash transfer project. (2022)
Timire, Collins, Sandy, Charles, Ferrand, Rashida A., Mubau, Regina, Shiri, Peter, Mbiriyawanda, Obert, Mbiba, Fredrick, Houben, Rein M. G. J., Pedrazzoli, Debora, Bond, Virginia, Foster, Nicola, Kranzer, Katharina
V
Household HCT Data. (2016)
Velen, Kavindhran, Lewis, James J, Charalambous, Salome, Page-Shipp, Liesl, Popane, Flora, Churchyard, Gavin J., Hoffmann, Christopher J.
W
linfeng-wang/GMM4TB. (2023)
Wang, Linfeng
weerasuriya/tbconvax-pcb. (2022)
Weerasuriya, Chathika Krishan
lshtm-tbmg/tbvax-pub. (2022)
Weerasuriya, Chathika, Clark, Rebecca
Performance of alternative measures to Body Mass Index in the assessment of moderate and severe under-nutrition among acutely unwell patients hospitalized in a TB ward in the Philippines: A cross-sectional study. (2019)
White, Laura V., Lee, Nathaniel, Marin, Flora P., Saludar, Naomi Ruth, Edwards, Tansy, Cox, Sharon
Casual and close contact data for buildings in South Africa and Zambia. (2011)
White, Richard, Dodd, Peter
description
Impact of Isoniazid Preventive Therapy on Tuberculosis incidence among people living with HIV: A secondary data analysis using Inverse Probability Weighting of individuals attending HIV care and treatment clinics in Tanzania. S1 Dataset. (2021)
Wilkinson, Katalin Andrea, Maokola, Werner M., Ngowi, Bernard J., Mahande, Michael J., Todd, Jim, Robert, Masanja, Msuya, Sia E.
X
Transmission analysis of a large TB outbreak in London: a mathematical modelling study using genomic data. (2020)
Xu, Yuanwei, Stockdale, Jessica E, Naidu, Vijay, Hatherell, Hollie, Stimson, James, Stagg, Helen R, Abubakar, Ibrahim, Colijn, Caroline
Z
S1 File for "Vitamin D status of tuberculosis patients with diabetes mellitus in different economic areas and associated factors in China". (2018)
Zhao, Xin, Yuan, Yanli, Lin, Yan, Zhang, Tiejuan, Bai, Yunlong, Kang, Demei, Li, Xianhui, Kang, Wanli, Dlodlo, Riitta A., Harries, Anthony D.