Keywords
Number of items: 28.
A
Sequence-Based Analysis Uncovers an Abundance of Non-Coding RNA in the Total Transcriptome of Mycobacterium tuberculosis. (2011)
Arnvig, Kristine B., Comas, Iñaki, Thomson, Nicholas R., Houghton, Joanna, Boshoff, Helena I., Croucher, Nicholas J., Rose, Graham, Perkins, Timothy T., Parkhill, Julian, Dougan, Gordon, Young, Douglas B.
G
99% credible set SNPs for leprosy association at chromosome 10q24. (2022)
Gilchrist, James J., Auckland, Kathryn, Parks, Tom, Mentzer, Alexander J., Goldblatt, Lily, Naranbhai, Vivek, Band, Gavin, Rockett, Kirk A., Toure, Ousmane B., Konate, Salimata, Sissoko, Sibiri, Djimdé, Abdoulaye A., Thera, Mahamadou A., Doumbo, Ogobara K., Sow, Samba, Floyd, Sian, Pönnighaus, Jörg M., Warndorff, David K., Crampin, Amelia C., Fine, Paul E. M., Fairfax, Benjamin P., Hill, Adrian V. S.
Analysis of pleiotropy at the leprosy association at chromosome 10q24. (2022)
Gilchrist, James J., Auckland, Kathryn, Parks, Tom, Mentzer, Alexander J., Goldblatt, Lily, Naranbhai, Vivek, Band, Gavin, Rockett, Kirk A., Toure, Ousmane B., Konate, Salimata, Sissoko, Sibiri, Djimdé, Abdoulaye A., Thera, Mahamadou A., Doumbo, Ogobara K., Sow, Samba, Floyd, Sian, Pönnighaus, Jörg M., Warndorff, David K., Crampin, Amelia C., Fine, Paul E. M., Fairfax, Benjamin P., Hill, Adrian V. S.
Association statistics for imputed classical HLA alleles and leprosy risk in Malawi and Mali. (2022)
Gilchrist, James J., Auckland, Kathryn, Parks, Tom, Mentzer, Alexander J., Goldblatt, Lily, Naranbhai, Vivek, Band, Gavin, Rockett, Kirk A., Toure, Ousmane B., Konate, Salimata, Sissoko, Sibiri, Djimdé, Abdoulaye A., Thera, Mahamadou A., Doumbo, Ogobara K., Sow, Samba, Floyd, Sian, Pönnighaus, Jörg M., Warndorff, David K., Crampin, Amelia C., Fine, Paul E. M., Fairfax, Benjamin P., Hill, Adrian V. S.
Chromatin state at chromosome 10q24. (2022)
Gilchrist, James J., Auckland, Kathryn, Parks, Tom, Mentzer, Alexander J., Goldblatt, Lily, Naranbhai, Vivek, Band, Gavin, Rockett, Kirk A., Toure, Ousmane B., Konate, Salimata, Sissoko, Sibiri, Djimdé, Abdoulaye A., Thera, Mahamadou A., Doumbo, Ogobara K., Sow, Samba, Floyd, Sian, Pönnighaus, Jörg M., Warndorff, David K., Crampin, Amelia C., Fine, Paul E. M., Fairfax, Benjamin P., Hill, Adrian V. S.
Genome-wide association study of leprosy in Malawi and Mali. S2 Table. (2022)
Gilchrist, James J., Auckland, Kathryn, Parks, Tom, Mentzer, Alexander J., Goldblatt, Lily, Naranbhai, Vivek, Band, Gavin, Rockett, Kirk A., Toure, Ousmane B., Konate, Salimata, Sissoko, Sibiri, Djimdé, Abdoulaye A., Thera, Mahamadou A., Doumbo, Ogobara K., Sow, Samba, Floyd, Sian, Pönnighaus, Jörg M., Warndorff, David K., Crampin, Amelia C., Fine, Paul E. M., Fairfax, Benjamin P., Hill, Adrian V. S.
Leprosy association statistics for suggestive associations in Malawi. S1 Table. (2022)
Gilchrist, James J., Auckland, Kathryn, Parks, Tom, Mentzer, Alexander J., Goldblatt, Lily, Naranbhai, Vivek, Band, Gavin, Rockett, Kirk A., Toure, Ousmane B., Konate, Salimata, Sissoko, Sibiri, Djimdé, Abdoulaye A., Thera, Mahamadou A., Doumbo, Ogobara K., Sow, Samba, Floyd, Sian, Pönnighaus, Jörg M., Warndorff, David K., Crampin, Amelia C., Fine, Paul E. M., Fairfax, Benjamin P., Hill, Adrian V. S.
Regulatory function at the chromosome 10q24 leprosy association. (2022)
Gilchrist, James J., Auckland, Kathryn, Parks, Tom, Mentzer, Alexander J., Goldblatt, Lily, Naranbhai, Vivek, Band, Gavin, Rockett, Kirk A., Toure, Ousmane B., Konate, Salimata, Sissoko, Sibiri, Djimdé, Abdoulaye A., Thera, Mahamadou A., Doumbo, Ogobara K., Sow, Samba, Floyd, Sian, Pönnighaus, Jörg M., Warndorff, David K., Crampin, Amelia C., Fine, Paul E. M., Fairfax, Benjamin P., Hill, Adrian V. S.
Replication of previously-published leprosy associated non-HLA SNPs in Malawi and Mali. (2022)
Gilchrist, James J., Auckland, Kathryn, Parks, Tom, Mentzer, Alexander J., Goldblatt, Lily, Naranbhai, Vivek, Band, Gavin, Rockett, Kirk A., Toure, Ousmane B., Konate, Salimata, Sissoko, Sibiri, Djimdé, Abdoulaye A., Thera, Mahamadou A., Doumbo, Ogobara K., Sow, Samba, Floyd, Sian, Pönnighaus, Jörg M., Warndorff, David K., Crampin, Amelia C., Fine, Paul E. M., Fairfax, Benjamin P., Hill, Adrian V. S.
Replication of previously-published leprosy associated non-HLA SNPs in Malawi and Mali stratified by multibacillary and paucibacillary disease. (2022)
Gilchrist, James J., Auckland, Kathryn, Parks, Tom, Mentzer, Alexander J., Goldblatt, Lily, Naranbhai, Vivek, Band, Gavin, Rockett, Kirk A., Toure, Ousmane B., Konate, Salimata, Sissoko, Sibiri, Djimdé, Abdoulaye A., Thera, Mahamadou A., Doumbo, Ogobara K., Sow, Samba, Floyd, Sian, Pönnighaus, Jörg M., Warndorff, David K., Crampin, Amelia C., Fine, Paul E. M., Fairfax, Benjamin P., Hill, Adrian V. S.
SNP quality control summary in Malawi and Mali. (2022)
Gilchrist, James J., Auckland, Kathryn, Parks, Tom, Mentzer, Alexander J., Goldblatt, Lily, Naranbhai, Vivek, Band, Gavin, Rockett, Kirk A., Toure, Ousmane B., Konate, Salimata, Sissoko, Sibiri, Djimdé, Abdoulaye A., Thera, Mahamadou A., Doumbo, Ogobara K., Sow, Samba, Floyd, Sian, Pönnighaus, Jörg M., Warndorff, David K., Crampin, Amelia C., Fine, Paul E. M., Fairfax, Benjamin P., Hill, Adrian V. S.
Sample quality control summary in Malawi and Mali. (2022)
Gilchrist, James J., Auckland, Kathryn, Parks, Tom, Mentzer, Alexander J., Goldblatt, Lily, Naranbhai, Vivek, Band, Gavin, Rockett, Kirk A., Toure, Ousmane B., Konate, Salimata, Sissoko, Sibiri, Djimdé, Abdoulaye A., Thera, Mahamadou A., Doumbo, Ogobara K., Sow, Samba, Floyd, Sian, Pönnighaus, Jörg M., Warndorff, David K., Crampin, Amelia C., Fine, Paul E. M., Fairfax, Benjamin P., Hill, Adrian V. S.
Selection signatures at chromosome 10q24. (2022)
Gilchrist, James J., Auckland, Kathryn, Parks, Tom, Mentzer, Alexander J., Goldblatt, Lily, Naranbhai, Vivek, Band, Gavin, Rockett, Kirk A., Toure, Ousmane B., Konate, Salimata, Sissoko, Sibiri, Djimdé, Abdoulaye A., Thera, Mahamadou A., Doumbo, Ogobara K., Sow, Samba, Floyd, Sian, Pönnighaus, Jörg M., Warndorff, David K., Crampin, Amelia C., Fine, Paul E. M., Fairfax, Benjamin P., Hill, Adrian V. S.
Study populations and leprosy association statistics at rs2015583 in the Chinese replication analysis. (2022)
Gilchrist, James J., Auckland, Kathryn, Parks, Tom, Mentzer, Alexander J., Goldblatt, Lily, Naranbhai, Vivek, Band, Gavin, Rockett, Kirk A., Toure, Ousmane B., Konate, Salimata, Sissoko, Sibiri, Djimdé, Abdoulaye A., Thera, Mahamadou A., Doumbo, Ogobara K., Sow, Samba, Floyd, Sian, Pönnighaus, Jörg M., Warndorff, David K., Crampin, Amelia C., Fine, Paul E. M., Fairfax, Benjamin P., Hill, Adrian V. S.
Identification of Reduced Host Transcriptomic Signatures for Tuberculosis Disease and Digital PCR-Based Validation and Quantification. (2021)
Gliddon, Harriet D., Kaforou, Myrsini, Alikian, Mary, Habgood-Coote, Dominic, Zhou, Chenxi, Oni, Tolu, Anderson, Suzanne T., Brent, Andrew J., Crampin, Amelia C., Eley, Brian, Heyderman, Robert, Kern, Florian, Langford, Paul R., Ottenhoff, Tom H. M., Hibberd, Martin L., French, Neil, Wright, Victoria J., Dockrell, Hazel M., Coin, Lachlan J., Wilkinson, Robert J., Levin, Michael
M
Gene ontology (GO) enrichment analysis results for significantly upregulated genes at all time points. (2022)
Meier, Stuart, Seddon, James A., Maasdorp, Elizna, Kleynhans, Léanie, du Plessis, Nelita, Loxton, Andre G., Malherbe, Stephanus T., Zak, Daniel E., Thompson, Ethan, Duffy, Fergal J., Kaufmann, Stefan H. E., Ottenhoff, Tom H. M., Scriba, Thomas J., Suliman, Sara, Sutherland, Jayne S., Winter, Jill, Kuivaniemi, Helena, Walzl, Gerhard, Tromp, Gerard
KEGG and gene ontology (GO) enrichment analyses for significantly differentially expressed genes between low and high PET score groups for the terms and pathways identified in the main analyses. (2022)
Meier, Stuart, Seddon, James A., Maasdorp, Elizna, Kleynhans, Léanie, du Plessis, Nelita, Loxton, Andre G., Malherbe, Stephanus T., Zak, Daniel E., Thompson, Ethan, Duffy, Fergal J., Kaufmann, Stefan H. E., Ottenhoff, Tom H. M., Scriba, Thomas J., Suliman, Sara, Sutherland, Jayne S., Winter, Jill, Kuivaniemi, Helena, Walzl, Gerhard, Tromp, Gerard
KEGG pathway enrichment analysis results for significantly differentially expressed genes at all time points. (2022)
Meier, Stuart, Seddon, James A., Maasdorp, Elizna, Kleynhans, Léanie, du Plessis, Nelita, Loxton, Andre G., Malherbe, Stephanus T., Zak, Daniel E., Thompson, Ethan, Duffy, Fergal J., Kaufmann, Stefan H. E., Ottenhoff, Tom H. M., Scriba, Thomas J., Suliman, Sara, Sutherland, Jayne S., Winter, Jill, Kuivaniemi, Helena, Walzl, Gerhard, Tromp, Gerard
List of differentially expressed genes at all time points. (2022)
Meier, Stuart, Seddon, James A., Maasdorp, Elizna, Kleynhans, Léanie, du Plessis, Nelita, Loxton, Andre G., Malherbe, Stephanus T., Zak, Daniel E., Thompson, Ethan, Duffy, Fergal J., Kaufmann, Stefan H. E., Ottenhoff, Tom H. M., Scriba, Thomas J., Suliman, Sara, Sutherland, Jayne S., Winter, Jill, Kuivaniemi, Helena, Walzl, Gerhard, Tromp, Gerard
PET scores for the catalysis study specimens. (2022)
Meier, Stuart, Seddon, James A., Maasdorp, Elizna, Kleynhans, Léanie, du Plessis, Nelita, Loxton, Andre G., Malherbe, Stephanus T., Zak, Daniel E., Thompson, Ethan, Duffy, Fergal J., Kaufmann, Stefan H. E., Ottenhoff, Tom H. M., Scriba, Thomas J., Suliman, Sara, Sutherland, Jayne S., Winter, Jill, Kuivaniemi, Helena, Walzl, Gerhard, Tromp, Gerard
N
RNA Sequence data analysis using DESeq2 pipeline. (2023)
Namulondo, Joyce, Nyangiri, Oscar Asanya, Kimuda, Magambo Phillip, Nambala, Peter, Nassuuna, Jacent, Egesa, Moses, Nerima, Barbara, Biryomumaisho, Savino, Mugasa, Claire Mack, Nabukenya, Immaculate, Kato, Drago, Elliott, Alison, Noyes, Harry, Tweyongyere, Robert, Matovu, Enock, Mulindwa, Julius
O
Significant under expression of the DosR regulon in M. tuberculosis complex lineage 6 in sputum. (2017)
Ofori-Anyinam, Boatema, Dolganov, Gregory, Van, Tran, Davis, J Lucian, Walter, Nicholas D, Garcia, Benjamin J, Voskuil, Marty, Fissette, Kristina, Diels, Maren, Driesen, Michèle, Meehan, Conor J, Yeboah-Manu, Dorothy, Coscolla, Mireia, Gagneux, Sebastien, Antonio, Martin, Schoolnik, Gary, Gehre, Florian, de Jong, Bouke C.
P
Transcription profiling of Burkholderia pseudomallei under salt stress and the effect on a type III secretion system. (2014)
Pumirat, Pornpan, Cuccui, Jon, Stabler, Richard, Stevens, Joanne M, Muangsombut, Veerachat, Singsuksawat, Ekapot, Stevens, Mark P, Wren, Brendan, Korbsrisate, Sunee
T
Host Immune Responses Differ between M. africanum- and M. tuberculosis-Infected Patients following Standard Anti-tuberculosis Treatment. (2016)
Tientcheu, Leopold, Haks, Mariëlle C., Agbla, Schadrac, Sutherland, Jayne, Adetifa, Ifedayo, Donkor, Simon, Quinten, Edwin, Daramy, Mohammed, Antonio, Martin, Kampmann, Beate, Ottenhoff, Tom H. M., Dockrell, Hazel, Ota, Martin O.
W
A HaemAtlas: characterizing gene expression in differentiated human blood cells. (2009)
Watkins, Nicholas A, Gusnanto, Arief, de Bono, Bernard, De, Subhajyoti, Miranda-Saavedra, Diego, Hardie, Debbie L, Angenent, Will G. J., Attwood, Antony P, Ellis, Peter D, Erber, Wendy, Foad, Nicola S, Garner, Stephen F, Isacke, Clare M, Jolley, Jennifer, Koch, Kerstin, Macaulay, Iain C, Morley, Sarah L, Rendon, Augusto, Rice, Kate M, Taylor, Niall, Thijssen-Timmer, Daphne C, Tijssen, Marloes R, van der Schoot, C. Ellen, Wernisch, Lorenz, Winzer, Thilo, Dudbridge, Frank, Buckley, Christopher D, Langford, Cordelia F, Teichmann, Sarah, Göttgens, Berthold, Ouwehand, Willem H
Additional file 3 of Pre-pregnancy gene expression signatures are associated with subsequent improvement/worsening of rheumatoid arthritis during pregnancy. (2024)
Wright, Matthew, Smed, Mette Kiel, Nelson, J. Lee, Olsen, Jørn, Hetland, Merete Lund, Jewell, Nicholas P., Zoffmann, Vibeke, Jawaheer, Damini
X
The prognostic significance of DAPK1 in bladder cancer. (2017)
Xie, Jian-Yun, Chen, Peng-Chen, Zhang, Jia-Li, Gao, Ze-Shou, Neves, Henrique, Zhang, Shu-Dong, Wen, Qing, Chen, Wei-Dong, Kwok, Hang Fai, Lin, Yao