Data Collection

Phelan, J (2024). Delta shape data. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.25713279.v1

Phelan, J and Thorpe, J (2023). jodyphelan/malaria-profiler. [Data Collection]. GitHub. https://github.com/jodyphelan/Malaria-Profiler

Phelan, J and Manko, E (2023). jodyphelan/malaria-db. [Data Collection]. GitHub. https://github.com/jodyphelan/malaria-db

Phelan, J (2023). jodyphelan/host-pathogen. [Data Collection]. Github. https://github.com/jodyphelan/host-pathogen

Phelan, JE and Menzel, P (2023). jodyphelan/tbdb. [Data Collection]. Github. https://github.com/jodyphelan/tbdb

Verboven, L, Phelan, J, Heupink, TH and Van Rie, A (2022). TBProfiler for automated calling of the association with drug resistance of variants in Mycobacterium tuberculosis. S1 File. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0279644.s002

Verboven, L, Phelan, J, Heupink, TH and Van Rie, A (2022). TBProfiler for automated calling of the association with drug resistance of variants in Mycobacterium tuberculosis. S2 File. [Data Collection]. Github. https://doi.org/10.1371/journal.pone.0279644.s003

Gröschel, MI, Owens, M, Freschi, L, Vargas, R, Marin, MG, Phelan, J, Iqbal, Z, Dixit, A and Farhat, MR (2021). Additional file 1 of GenTB: A user-friendly genome-based predictor for tuberculosis resistance powered by machine learning. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.16544185.v1

Spadar, A, Phelan, J, Diez-Benavente, E, Campos, M, Gomez, LF, Mohareb, F, Clark, TG and Campino, S (2021). Data for: "Flavivirus integrations in Aedes aegypti are limited and highly conserved across samples from different geographic regions unlike integrations in Aedes albopictus". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002482.

Srilohasin, P, Prammananan, T, Faksri, K, Phelan, JE, Suriyaphol, P, Kamolwat, P, Smithtikarn, S, Disratthakit, A, Regmi, SM, Leechawengwongs, M, Twee-Hee Ong, R, Teo, YY, Tongsima, S, Clark, TG and Chaiprasert, A (2020). Genomic evidence supporting the clonal expansion of extensively drug-resistant tuberculosis bacteria belonging to a rare proto-Beijing genotype. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.13378598.v1

Phelan, J and Deelder, W (2020). COVID-Profiler. [Data Collection]. Github. https://github.com/jodyphelan/covid-profiler

Phelan, J, O’Sullivan, DM, Machado, D, Ramos, J, Oppong, YE, Campino, S, O’Grady, J, McNerney, R, Hibberd, ML, Viveiros, M, Huggett, JF and Clark, TG (2019). Additional file 1: of Integrating informatics tools and portable sequencing technology for rapid detection of resistance to anti-tuberculous drugs. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.8318861.v1

Sobkowiak, B, Glynn, JR, Houben, Rein M. G. J., Mallard, K, Phelan, JE, Guerra-Assunção, JA, Banda, L, Mzembe, T, Viveiros, M, McNerney, R, Parkhill, J, Crampin, AC and Clark, TG (2018). Additional file 1: of Identifying mixed Mycobacterium tuberculosis infections from whole genome sequence data. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.6968636.v1

Palittapongarnpim, P, Ajawatanawong, P, Viratyosin, W, Smittipat, N, Disratthakit, A, Mahasirimongkol, S, Yanai, H, Yamada, N, Nedsuwan, S, Imasanguan, W, Kantipong, P, Chaiyasirinroje, B, Wongyai, J, Toyo-oka, L, Phelan, J, Parkhill, J, Clark, TG, Hibberd, ML, Ruengchai, W, Palittapongarnpim, P, Juthayothin, T, Tongsima, S and Tokunaga, K (2018). Evidence for Host-Bacterial Co-evolution via Genome Sequence Analysis of 480 Thai Mycobacterium tuberculosis Lineage 1 Isolates. [Data Collection]. Scientific Reports. https://doi.org/10.1038/s41598-018-29986-3

Herman, LS, Fornace, K, Phelan, J, Grigg, MJ, Anstey, NM, William, T, Moon, RW, Blackman, MJ, Drakeley, CJ and Tetteh, KKA (2018). Identification and validation of a novel panel of Plasmodium knowlesi biomarkers of serological exposure. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0006457

Sepúlveda, N, Phelan, J, Diez-Benavente, E, Campino, S, Clark, TG, Hopkins, H, Sutherland, C, Drakeley, CJ and Beshir, KB (2018). Global analysis of Plasmodium falciparum histidine-rich protein-2 ( pfhrp2 ) and pfhrp3 gene deletions using whole-genome sequencing data and meta-analysis. [Data Collection]. Infection, Genetics and Evolution. https://doi.org/10.1016/j.meegid.2018.04.039

Andreu, N, Phelan, J, de Sessions, PF, Cliff, JM, Clark, T and Hibberd, M (2017). Primary macrophages and J774 cells respond differently to infection with Mycobacterium tuberculosis. [Data Collection]. Gene Expression Omnibus. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE88801

Phelan, JE, Coll, F, Bergval, I, Anthony, RM, Warren, R, Sampson, SL, Gey van Pittius, NC, Glynn, JR, Crampin, AC, Alves, A, Bessa, TB, Campino, S, Dheda, K, Grandjean, L, Hasan, R, Hasan, Z, Miranda, A, Moore, D, Panaiotov, S, Perdigao, J, Portugal, I, Sheen, P, de Oliveira Sousa, E, Streicher, EM, van Helden, PD, Viveiros, M, Hibberd, ML, Pain, A, Mcnerney, R and Clark, TG (2016). Data for: "Recombination in pe/ppe genes contributes to genetic variation in Mycobacterium tuberculosis lineages". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Phelan, J, Coll, F, Mcnerney, R, Ascher, DB, Pires, DEV, Furnham, N, Coeck, N, Hill-Cawthorne, GA, Nair, MB, Mallard, K, Ramsay, A, Campino, S, Hibberd, M, Pain, A, Rigouts, L and Clark, T (2015). Whole genome sequences for M.tuberculosis isolates from the TDR strain bank. [Data Collection]. European Nucleotide Archive. http://www.ebi.ac.uk/ena/data/view/PRJEB11653