Item Type Date Title No Grouping

Dataset

Convergent evolution of artemisinin and chloroquine resistance in Ethiopian Plasmodium falciparum parasites. (2025) Letebo, Alemayehu; Vanheer, Leen N.; Engdaw, Mengst; Alemayehu, Dawit Hailu; Deressa, Jimma Dinsa; Adnew, Bethlehem; Ayele, Abaysew; Keffale, Migbaru; Demisse, Mulugeta; Seyoum, Tamrayehu; Shiferaw, Meklit; Sime, Heven; Gebreegziabxier, Atsbeha; Shimelash, Amanuel; Tafa, Elias B.; Chali, Wakweya; Alemayehu, Lina; Kassa, Fikregabrail Aberra; Zeleke, Ayalew Jejaw; Hamza, Tajudin Abdurhaman; Tamirat, Abel Beliyu; Misganaw, Tadesse; Bogale, Alayu; Abriham, Zufan Yiheyis; Nasir, Yasin; Jebessa, Gutema; Ejigu, Legesse Alamerie; Yohannes, Metmiku; Kebede, Betelhem Akililu; Ayele, Matiwos Kidane; Abdo, Melat; Habtamu, Getinet; Gizat, Addisu; Phelan, Jody; Matlock, Bryce; Fidock, David A.; Campino, Susana; Assefa, Ashenafi; Koepfli, Cristian; Massebo, Fekadu; Tadesse, Fitsum G.

jodyphelan/pathogen-profiler. (2025) Phelan, Jody; van Heusden, Peter; Meuli, Michael; Cuddihy, Thom

jodyphelan/NTM-Profiler. (2025) Phelan, Jody

Additional file 1 of Large-scale reference-free analysis of flavivirus sequences in Aedes aegypti whole genome DNA sequencing data. (2024) Spadar, Anton; Phelan, Jody; Clark, Taane G.; Campino, Susana

Additional file 3 of Large-scale reference-free analysis of flavivirus sequences in Aedes aegypti whole genome DNA sequencing data. (2024) Spadar, Anton; Phelan, Jody E.; Clark, Taane G.; Campino, Susana

Delta shape data. (2024) Phelan, Jody

jodyphelan/malaria-profiler. (2023) Phelan, Jody; Thorpe, Joseph

jodyphelan/malaria-db. (2023) Phelan, Jody; Manko, Emilia

jodyphelan/host-pathogen. (2023) Phelan, Jody

jodyphelan/tbdb. (2023) Phelan, Jody E.; Menzel, Peter

TBProfiler for automated calling of the association with drug resistance of variants in Mycobacterium tuberculosis. S1 File. (2022) Verboven, Lennert; Phelan, Jody; Heupink, Tim H.; Van Rie, Annelies

TBProfiler for automated calling of the association with drug resistance of variants in Mycobacterium tuberculosis. S2 File. (2022) Verboven, Lennert; Phelan, Jody; Heupink, Tim H.; Van Rie, Annelies

Additional file 1 of GenTB: A user-friendly genome-based predictor for tuberculosis resistance powered by machine learning. (2021) Gröschel, Matthias I.; Owens, Martin; Freschi, Luca; Vargas, Roger; Marin, Maximilian G.; Phelan, Jody; Iqbal, Zamin; Dixit, Avika; Farhat, Maha R.

Data for: "Flavivirus integrations in Aedes aegypti are limited and highly conserved across samples from different geographic regions unlike integrations in Aedes albopictus". (2021) Spadar, Anton; Phelan, Jody; Diez-Benavente, Ernest; Campos, Monica; Gomez, Lara Ferrero; Mohareb, Fady; Clark, Taane G.; Campino, Susana

Genomic evidence supporting the clonal expansion of extensively drug-resistant tuberculosis bacteria belonging to a rare proto-Beijing genotype. (2020) Srilohasin, Prapaporn; Prammananan, Therdsak; Faksri, Kiatichai; Phelan, Jody E.; Suriyaphol, Prapat; Kamolwat, Phalin; Smithtikarn, Saijai; Disratthakit, Areeya; Regmi, Sanjib Mani; Leechawengwongs, Manoon; Twee-Hee Ong, Rick; Teo, Yik Ying; Tongsima, Sissades; Clark, Taane G.; Chaiprasert, Angkana

COVID-Profiler. (2020) Phelan, Jody; Deelder, Wouter

Additional file 1: of Integrating informatics tools and portable sequencing technology for rapid detection of resistance to anti-tuberculous drugs. (2019) Phelan, Jody; O’Sullivan, Denise M; Machado, Diana; Ramos, Jorge; Oppong, Yaa EA; Campino, Susana; O’Grady, Justin; McNerney, Ruth; Hibberd, Martin L; Viveiros, Miguel; Huggett, Jim F; Clark, Taane G.

Additional file 1: of Identifying mixed Mycobacterium tuberculosis infections from whole genome sequence data. (2018) Sobkowiak, Benjamin; Glynn, Judith R.; Houben, Rein M. G. J.; Mallard, Kim; Phelan, Jody E.; Guerra-Assunção, José Afonso; Banda, Louis; Mzembe, Themba; Viveiros, Miguel; McNerney, Ruth; Parkhill, Julian; Crampin, Amelia C.; Clark, Taane G.

Evidence for Host-Bacterial Co-evolution via Genome Sequence Analysis of 480 Thai Mycobacterium tuberculosis Lineage 1 Isolates. (2018) Palittapongarnpim, Prasit; Ajawatanawong, Pravech; Viratyosin, Wasna; Smittipat, Nat; Disratthakit, Areeya; Mahasirimongkol, Surakameth; Yanai, Hideki; Yamada, Norio; Nedsuwan, Supalert; Imasanguan, Worarat; Kantipong, Pacharee; Chaiyasirinroje, Boonchai; Wongyai, Jiraporn; Toyo-oka, Licht; Phelan, Jody; Parkhill, Julian; Clark, Taane G.; Hibberd, Martin L.; Ruengchai, Wuthiwat; Palittapongarnpim, Panawun; Juthayothin, Tada; Tongsima, Sissades; Tokunaga, Katsushi

Identification and validation of a novel panel of Plasmodium knowlesi biomarkers of serological exposure. (2018) Herman, Lou S.; Fornace, Kimberly; Phelan, Jody; Grigg, Matthew J.; Anstey, Nicholas M.; William, Timothy; Moon, Robert W.; Blackman, Michael J.; Drakeley, Chris J.; Tetteh, Kevin K. A.

Global analysis of Plasmodium falciparum histidine-rich protein-2 ( pfhrp2 ) and pfhrp3 gene deletions using whole-genome sequencing data and meta-analysis. (2018) Sepúlveda, Nuno; Phelan, Jody; Diez-Benavente, Ernest; Campino, Susana; Clark, Taane G.; Hopkins, Heidi; Sutherland, Colin; Drakeley, Chris J.; Beshir, Khalid B.

Primary macrophages and J774 cells respond differently to infection with Mycobacterium tuberculosis. (2017) Andreu, Nuria; Phelan, Jody; de Sessions, Paola F; Cliff, Jackie M.; Clark, Taane; Hibberd, Martin

Whole genome sequences for M.tuberculosis isolates from the TDR strain bank. (2015) Phelan, Jody; Coll, Francesc; Mcnerney, Ruth; Ascher, David B.; Pires, Douglas E. V.; Furnham, Nick; Coeck, Nele; Hill-Cawthorne, Grant A.; Nair, Mridul B.; Mallard, Kim; Ramsay, Andrew; Campino, Susana; Hibberd, Martin; Pain, Arnab; Rigouts, Leen; Clark, Taane description