Items where Data Creator is Phelan, Jody"
Number of items: 21.
4 November 2015
  • Whole genome sequences for M.tuberculosis isolates from the TDR strain bank. (2015) Phelan, Jody, Coll, Francesc, Mcnerney, Ruth, Ascher, David B., Pires, Douglas E. V., Furnham, Nick, Coeck, Nele, Hill-Cawthorne, Grant A., Nair, Mridul B., Mallard, Kim, Ramsay, Andrew, Campino, Susana, Hibberd, Martin, Pain, Arnab, Rigouts, Leen, Clark, Taane description
    • 8 February 2017
  • Primary macrophages and J774 cells respond differently to infection with Mycobacterium tuberculosis. (2017) Andreu, Nuria, Phelan, Jody, de Sessions, Paola F, Cliff, Jackie M., Clark, Taane, Hibberd, Martin
    • 2 May 2018
  • Global analysis of Plasmodium falciparum histidine-rich protein-2 ( pfhrp2 ) and pfhrp3 gene deletions using whole-genome sequencing data and meta-analysis. (2018) Sepúlveda, Nuno, Phelan, Jody, Diez-Benavente, Ernest, Campino, Susana, Clark, Taane G., Hopkins, Heidi, Sutherland, Colin, Drakeley, Chris J., Beshir, Khalid B.
    • 14 June 2018
  • Identification and validation of a novel panel of Plasmodium knowlesi biomarkers of serological exposure. (2018) Herman, Lou S., Fornace, Kimberly, Phelan, Jody, Grigg, Matthew J., Anstey, Nicholas M., William, Timothy, Moon, Robert W., Blackman, Michael J., Drakeley, Chris J., Tetteh, Kevin K. A.
    • 2 August 2018
  • Evidence for Host-Bacterial Co-evolution via Genome Sequence Analysis of 480 Thai Mycobacterium tuberculosis Lineage 1 Isolates. (2018) Palittapongarnpim, Prasit, Ajawatanawong, Pravech, Viratyosin, Wasna, Smittipat, Nat, Disratthakit, Areeya, Mahasirimongkol, Surakameth, Yanai, Hideki, Yamada, Norio, Nedsuwan, Supalert, Imasanguan, Worarat, Kantipong, Pacharee, Chaiyasirinroje, Boonchai, Wongyai, Jiraporn, Toyo-oka, Licht, Phelan, Jody, Parkhill, Julian, Clark, Taane G., Hibberd, Martin L., Ruengchai, Wuthiwat, Palittapongarnpim, Panawun, Juthayothin, Tada, Tongsima, Sissades, Tokunaga, Katsushi
    • 14 August 2018
  • Additional file 1: of Identifying mixed Mycobacterium tuberculosis infections from whole genome sequence data. (2018) Sobkowiak, Benjamin, Glynn, Judith R., Houben, Rein M. G. J., Mallard, Kim, Phelan, Jody E., Guerra-Assunção, José Afonso, Banda, Louis, Mzembe, Themba, Viveiros, Miguel, McNerney, Ruth, Parkhill, Julian, Crampin, Amelia C., Clark, Taane G.
    • 24 June 2019
  • Additional file 1: of Integrating informatics tools and portable sequencing technology for rapid detection of resistance to anti-tuberculous drugs. (2019) Phelan, Jody, O’Sullivan, Denise M, Machado, Diana, Ramos, Jorge, Oppong, Yaa EA, Campino, Susana, O’Grady, Justin, McNerney, Ruth, Hibberd, Martin L, Viveiros, Miguel, Huggett, Jim F, Clark, Taane G.
    • 2020
  • COVID-Profiler. (2020) Phelan, Jody, Deelder, Wouter
    • 15 December 2020
  • Genomic evidence supporting the clonal expansion of extensively drug-resistant tuberculosis bacteria belonging to a rare proto-Beijing genotype. (2020) Srilohasin, Prapaporn, Prammananan, Therdsak, Faksri, Kiatichai, Phelan, Jody E., Suriyaphol, Prapat, Kamolwat, Phalin, Smithtikarn, Saijai, Disratthakit, Areeya, Regmi, Sanjib Mani, Leechawengwongs, Manoon, Twee-Hee Ong, Rick, Teo, Yik Ying, Tongsima, Sissades, Clark, Taane G., Chaiprasert, Angkana
    • 27 June 2021
  • Data for: "Flavivirus integrations in Aedes aegypti are limited and highly conserved across samples from different geographic regions unlike integrations in Aedes albopictus". (2021) Spadar, Anton, Phelan, Jody, Diez-Benavente, Ernest, Campos, Monica, Gomez, Lara Ferrero, Mohareb, Fady, Clark, Taane G., Campino, Susana
    • 31 August 2021
  • Additional file 1 of GenTB: A user-friendly genome-based predictor for tuberculosis resistance powered by machine learning. (2021) Gröschel, Matthias I., Owens, Martin, Freschi, Luca, Vargas, Roger, Marin, Maximilian G., Phelan, Jody, Iqbal, Zamin, Dixit, Avika, Farhat, Maha R.
    • 30 December 2022
  • TBProfiler for automated calling of the association with drug resistance of variants in Mycobacterium tuberculosis. S1 File. (2022) Verboven, Lennert, Phelan, Jody, Heupink, Tim H., Van Rie, Annelies
  • TBProfiler for automated calling of the association with drug resistance of variants in Mycobacterium tuberculosis. S2 File. (2022) Verboven, Lennert, Phelan, Jody, Heupink, Tim H., Van Rie, Annelies
    • 16 January 2023
  • jodyphelan/tbdb. (2023) Phelan, Jody E., Menzel, Peter
    • 23 January 2023
  • jodyphelan/host-pathogen. (2023) Phelan, Jody
    • 20 February 2023
  • jodyphelan/malaria-db. (2023) Phelan, Jody, Manko, Emilia
    • 16 November 2023
  • jodyphelan/malaria-profiler. (2023) Phelan, Jody, Thorpe, Joseph
    • 29 April 2024
  • Delta shape data. (2024) Phelan, Jody
    • 13 August 2024
  • Additional file 1 of Large-scale reference-free analysis of flavivirus sequences in Aedes aegypti whole genome DNA sequencing data. (2024) Spadar, Anton, Phelan, Jody, Clark, Taane G., Campino, Susana
  • Additional file 3 of Large-scale reference-free analysis of flavivirus sequences in Aedes aegypti whole genome DNA sequencing data. (2024) Spadar, Anton, Phelan, Jody E., Clark, Taane G., Campino, Susana
    • 16 July 2025
  • Convergent evolution of artemisinin and chloroquine resistance in Ethiopian Plasmodium falciparum parasites. (2025) Letebo, Alemayehu, Vanheer, Leen N., Engdaw, Mengst, Alemayehu, Dawit Hailu, Deressa, Jimma Dinsa, Adnew, Bethlehem, Ayele, Abaysew, Keffale, Migbaru, Demisse, Mulugeta, Seyoum, Tamrayehu, Shiferaw, Meklit, Sime, Heven, Gebreegziabxier, Atsbeha, Shimelash, Amanuel, Tafa, Elias B., Chali, Wakweya, Alemayehu, Lina, Kassa, Fikregabrail Aberra, Zeleke, Ayalew Jejaw, Hamza, Tajudin Abdurhaman, Tamirat, Abel Beliyu, Misganaw, Tadesse, Bogale, Alayu, Abriham, Zufan Yiheyis, Nasir, Yasin, Jebessa, Gutema, Ejigu, Legesse Alamerie, Yohannes, Metmiku, Kebede, Betelhem Akililu, Ayele, Matiwos Kidane, Abdo, Melat, Habtamu, Getinet, Gizat, Addisu, Phelan, Jody, Matlock, Bryce, Fidock, David A., Campino, Susana, Assefa, Ashenafi, Koepfli, Cristian, Massebo, Fekadu, Tadesse, Fitsum G.