; Phelan, J; Diez-Benavente, E; Campos, M; Gomez, LF; Mohareb, F; Clark, TG and Campino, S
(2021).
Data for: "Flavivirus integrations in Aedes aegypti are limited and highly conserved across samples from different geographic regions unlike integrations in Aedes albopictus".
[Dataset].
London School of Hygiene & Tropical Medicine, London, United Kingdom.
10.17037/DATA.00002482.
Supplementary material published to support a paper titled "Flavivirus integrations in Aedes aegypti are limited and highly conserved across samples from different geographic regions unlike integrations in Aedes albopictus". It includes: (1) descriptive statistics of excluded and retained sequences; (2) BLASTN results processing flow diagram; (3) an Excel spreadsheet containing BLASTN hits from AaegL5 assembly; (4) an Excel spreadsheet containing accession IDs of all used flavivirus genomes; (5) an Excel spreadsheet listing BLASTN hits from AaloF2 assembly; (6) an Excel spreadsheet listing EVE coordinates and sequences identified in AaloF2; and (7) EVE bedfiles for AaegL5 and AaloF2 assemblies; phylogenetic trees and corresponding metadata for Ae. aegypti EVEs and cox1 gene.
Keywords
Mosquito; Aedes; Flavivirus; Arbovirus; Endogenous viral element| Item Type | Dataset |
|---|---|
| Resource Type |
Resource Type Resource Description Dataset Quantitative |
| Capture method | Unknown |
| Date | 27 June 2021 |
| Language(s) of written materials | English |
| Creator(s) |
Spadar, A; Phelan, J; Diez-Benavente, E; Campos, M; Gomez, LF; Mohareb, F; Clark, TG and Campino, S
|
| LSHTM Faculty/Department | Faculty of Infectious and Tropical Diseases > Dept of Immunology and Infection (-2019) |
| Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom |
| Date Deposited | 02 Sep 2021 09:26 |
| Last Modified | 30 Oct 2025 10:19 |
| Publisher | London School of Hygiene & Tropical Medicine |
No files available. Please consult associated links.
