Data Creators(s) Item Type No Grouping

A

martyn1fyles/HouseholdContactTracing. (2021) Abbott, Sam, Fyles, Martyn

Dataset: Seasonality and immunity to laboratory-confirmed seasonal coronaviruses (HCoV-NL63, HCoV-OC43, and HCoV-229E): results from the Flu Watch cohort study. (2020) Aldridge, Robert W., Lewer, Dan, Beale, Sarah, Johnson, Anne M., Zambon, Maria, Hayward, Andrew C., Fragaszy, Ellen

B

Dataset for article Berrang-Ford et al. "Systematic mapping of global research on climate and health using machine learning" The Lancet Planetary Health. (2021) Berrang-Ford, Lea, Sietsma, Anne J., Callaghan, Max, Minx, Jan, Scheelbeek, Pauline, Haddaway, Neal, Haines, Andrew, Dangour, Alan D.

England-Codelist-ICD10-Covariates. (2021) Bidulka, Patrick description

England-Codelist-ICD10-Outcomes. (2021) Bidulka, Patrick description

England-Codelist-ProductCodes-Covariates. (2021) Bidulka, Patrick description

epiforecasts/covid.german.forecasts. (2022) Bosse, Nikos, Abbott, Sam, Funk, Sebastian

obrady/Brazil_microcepahly_analysis_public. (2018) Brady, Oliver J.

C

Duration of protection of CoronaVac plus heterologous BNT162b2 booster in the Omicron period in Brazil. (2022) Cerqueira-Silva, Thiago, de Araujo Oliveira, Vinicius, Paixão, Enny S., Júnior, Juracy Bertoldo, Penna, Gerson O., Werneck, Guilherme L., Pearce, Neil, Barreto, Maurício L., Boaventura, Viviane S., Barral-Netto, Manoel

Comparison of COVID-19 vaccine prioritization strategies in the United States. (2021) Chapman, Lloyd A. C., Shukla, Poojan, Lo, Nathan C

Additional file 1 of Symptoms in first-degree relatives of patients with rheumatoid arthritis: evaluation of cross-sectional data from the symptoms in persons at risk of rheumatoid arthritis (SPARRA) questionnaire in the PRe-clinical EValuation of Novel Targets in RA (PREVeNT-RA) Cohort. (2021) Costello, Ruth E., Humphreys, J. H., Sergeant, J. C., Haris, M., Stirling, F., Raza, K., van Schaardenburg, D., Bruce, Ian N.

The risks of HCV infection among Brazilian crack cocaine users: incorporating diagnostic test uncertainty. (2019) Coutinho, Carolina, Bastos, Leonardo, Corrêa da Mota, Jurema, Toledo, Lidiane, Costa, Katia, Bertoni, Neilane, Bastos, Francisco I

Patterns of non-communicable comorbidities at start of tuberculosis treatment in three regions of the Philippines: St-ATT cohort baseline data. (2021) Cox, Sharon, Faguer, Benjamin description

D

Integrated view of Vibrio cholerae in the Americas. (2017) Domman, Daryl, Quilici, Marie-Laure, Dorman, Matthew J., Njamkepo, Elisabeth, Mutreja, Ankur, Mather, Alison E., Delgado, Gabriella, Morales-Espinosa, Rosario, Grimont, Patrick A. D., Lizárraga-Partida, Marcial Leonardo, Bouchier, Christiane, Aanensen, David M., Kuri-Morales, Pablo, Tarr, Cheryl L., Dougan, Gordon, Parkhill, Julian, Campos, Josefina, Cravioto, Alejandro, Weill, François-Xavier, Thomson, Nicholas R.

F

Targeted maximum likelihood estimation for a binary treatment: A tutorial. (2018) Fernandez, Miguel Angel Luque, Schomaker, Michael, Rachet, Bernard, Schnitzer, Mireille E.

migariane/TutorialCausalInferenceEstimators: Computational Causal Inference for Applied Researchers. (2020) Fernandez, Miguel Angel Luque, Zivich, Paul, Smith, Matthew James

EmilieFinch/covid-reinfection. (2022) Finch, Emilie, Kucharski, Adam J.

G

Is Brazil reaching malaria elimination? A time series analysis of malaria cases from 2011 to 2023. (2024) Garcia, Klauss Kleydmann Sabino, Soremekun, Seyi, Abrahão, Amanda Amaral, Marchesini, Paola Barbosa, Drakeley, Chris, Ramalho, Walter Massa, Siqueira, André M.

Additional file 2 of Assessing the impact of the “malaria supporters project” intervention to malaria control in the Brazilian Amazon: an interrupted time-series analysis. (2023) Garcia, Klauss Kleydmann Sabino, Soremekun, Seyi, Bottomley, Christian, Abrahão, Amanda Amaral, de Miranda, Cristiano Barreto, Drakeley, Chris, Ramalho, Walter Massa, Siqueira, André M

Additional file 3 of Assessing the impact of the “malaria supporters project” intervention to malaria control in the Brazilian Amazon: an interrupted time-series analysis. (2023) Garcia, Klauss Kleydmann Sabino, Soremekun, Seyi, Bottomley, Christian, Abrahão, Amanda Amaral, de Miranda, Cristiano Barreto, Drakeley, Chris, Ramalho, Walter Massa, Siqueira, André M

Synthetic datasets of the UK Biobank cohort. (2024) Gasparrini, Antonio, Vanoli, Jacopo

rorygibb/dengue_vietnam_ms: v1.0.0: Code base for Nature Communications MS. (2023) Gibb, Rory

Qualitative and Quantitative Data for Tuberculosis Infection Prevention and Control in KwaZulu-Natal and Western Cape, South Africa, 2018-2021. (2022) Grant, Alison D., Kielmann, Karina

H

Syndromic survey de-identified data in SPSS. (2019) Haque, Farhana, Rahman, Mahmudur, Banu, Nuzhat Nasreen, Sharif, Ahmad Raihan, Jubayer, Shamim, Shamsuzzaman, AKM, Alamgir, ASM, Erasmus, Jesse H., Guzman, Hilda, Forrester, Naomi, Luby, Stephen P., Gurley, Emily S.

De-identified clinical survey data in SPSS. (2019) Haque, Farhana, Rahman, Mahmudur, Banu, Nuzhat Nasreen, Sharif, Ahmad Raihan, Jubayer, Shamim, Shamsuzzaman, AKM, Alamgir, ASM, Erasmus, Jesse H, Guzman, Hilda, Forrester, Naomi, Luby, Stephen P, Gurley, Emily S

De-identified symptom duration data in SPSS. (2019) Haque, Farhana, Rahman, Mahmudur, Banu, Nuzhat Nasreen, Sharif, Ahmad Raihan, Jubayer, Shamim, Shamsuzzaman, AKM, Alamgir, ASM, Erasmus, Jesse H, Guzman, Hilda, Forrester, Naomi, Luby, Stephen P, Gurley, Emily S

J

Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data. (2014) Jombart, Thibaut, Cori, Anne, Didelot, Xavier, Cauchemez, Simon, Fraser, Christophe, Ferguson, Neil

K

Prevalence and causes of visual impairment among school children in Blantyre, Southern Malawi. (2024) Kalua, Khumbo, Manikavasagar, Pirakalai

Contacts in context: large-scale setting-specific social mixing matrices from the BBC Pandemic project. (2020) Klepac, Petra, Kucharski, Adam J, Conlan, Andrew JK, Kissler, Stephen, Tang, Maria, Fry, Hannah, Gog, Julia R

Source data for "Date of introduction and epidemiologic patterns of SARS-CoV-2 in Mogadishu, Somalia: estimates from transmission modelling of satellite-based excess mortality data in 2020". (2021) Koltai, Mihaly

mbkoltai/RSV-resurgence-model. (2022) Koltai, Mihaly, Krauer, Fabienne

Durations of asymptomatic, symptomatic, and care-seeking phases of tuberculosis disease with a Bayesian analysis of prevalence survey and notification data. (2021) Ku, Chu-Chang, MacPherson, Peter, Khundi, McEwen, Nzawa Soko, Rebecca H., Feasey, Helena R. A., Nliwasa, Marriott, Horton, Katherine C., Corbett, Elizabeth L., Dodd, Peter J.

Meta-analysis of epigenome-wide association studies in neonates reveals widespread differential DNA methylation associated with birthweight. (2019) Küpers, Leanne K, Monnereau, Claire, Sharp, Gemma C, Yousefi, Paul, Salas, Lucas A, Ghantous, Akram Ghantous, Page, Christian M, Reese, Sarah E, Wilcox, Allen J, Czamara, Darina, Starling, Anne P, Novoloaca, Alexei, Lent, Samantha, Roy, Ritu, Hoyo, Cathrine, Breton, Carrie V, Allard, Catherine, Just, Allan C, Bakulski, Kelly M, Holloway, John W, Everson, Todd M, Xu, Cheng-Jian, Huang, Rae-Chi, van der Plaat, Diana A., Wielscher, Matthias, Kebede Merid, Simon, Ullemar, Vilhelmina, Rezwan, Faisal I, Lahti, Jari, van Dongen, Jenny, Langie, Sabine AS, Richardson, Tom G, Magnus, Maria C, Nohr, Ellen A, Xu, Zongli, Duijts, Liesbeth, Zhao, Shanshan, Zhang, Weiming, Plusquin, Michelle, DeMeo, Dawn L, Solomon, Olivia, Heimovaara, Joosje H, Jima, Dereje D, Gao, Lu, Bustamante, Mariona, Perron, Patrice, Wright, Robert O, Hertz-Picciotto, Irva, Zhang, Hongmei, Karagas, Margaret R, Gehring, Ulrike, Marsit, Carmen J, Beilin, Lawrence J, Vonk, Judith M, Jarvelin, Marjo-Riitta, Bergström, Anna, Örtqvist, Anne K, Ewart, Susan, Villa, Pia M, Moore, Sophie, Willemsen, Gonneke, Standaert, Arnout RL, Håberg, Siri E, Sørensen, Thorkild IA, Taylor, Jack A, Räikkönen, Katri, Yang, Ivana V, Kechris, Katerina, Nawrot, Tim S, Silver, Matt J., Gong, Yun Yun, Richiardi, Lorenzo, Kogevinas, Manolis, Litonjua, Augusto A, Eskenazi, Brenda, Huen, Karen, Mbarek, Hamdi, Maguire, Rachel L, Dwyer, Terence, Vrijheid, Martine, Bouchard, Luigi, Baccarelli, Andrea A, Croen, Lisa A, Karmaus, Wilfried, Anderson, Denise, de Vries, Maaike, Sebert, Sylvain, Kere, Juha, Karlsson, Robert, Hasan Arshad, Syed, Hämäläinen, Esa, Routledge, Michael N, Boomsma, Dorret I, Feinberg, Andrew P, Newschaffer, Craig J, Govarts, Eva, Moisse, Matthieu, Fallin, M. Daniele, Melén, Erik, Prentice, Andrew M., Kajantie, Eero, Almqvist, Catarina, Oken, Emily, Dabelea, Dana, Boezen, H. Marike, Melton, Phillip E, Wright, Rosalind J, Koppelman, Gerard H, Trevisi, Letizia, Hivert, Marie-France, Sunyer, Jordi, Munthe-Kaas, Monica C, Murphy, Susan K, Corpeleijn, Eva, Wiemels, Joseph, Holland, Nina, Herceg, Zdenko, Binder, Elisabeth B, Smith, George Davey, Jaddoe, Vincent WV, Lie, Rolv T, Nystad, Wenche, London, Stephanie J, Lawlor, Debbie A, Relton, Caroline L, Snieder, Harold, Felix, Janine F

L

Additional file 1 of Epigenetic modelling of former, current and never smokers. (2021) Langdon, Ryan J, Yousefi, Paul, Relton, Caroline L, Suderman, Matthew J

Additional file 4 of Epigenetic modelling of former, current and never smokers. (2021) Langdon, Ryan J, Yousefi, Paul, Relton, Caroline L, Suderman, Matthew J

OpenDengue/master-repo. (2024) Lim, Ahyoung, Brady, Oliver J

Data for: Identifying human encounters that shape the transmission of Streptococcus pneumoniae and other acute respiratory infections. (2018) le Polain de Waroux, Olivier, Flasche, Stefan, Kucharski, Adam J, Langendorf, Celine, Ndazima, Donny, Mwanga-Amumpaire, Juliet, Grais, Rebecca F, Cohuet, Sandra, Edmunds, W John

M

BlantyreTBEpi. (2018) MacPherson, Peter, Khundi, McEwen, Nliwasa, Marriott, Choko, Augustine T., Phiri, Vincent K., Webb, Emily L., Dodd, Peter J., Cohen, Ted, Harris, Rebecca, Corbett, Elizabeth L.

julianmatthewman/Eczema_outcomes_public. (2024) Matthewman, Julian

Supplementary material for the article, "Measles Outbreak Investigation Process in Low- and Middle-Income Countries: A Systematic Review of the Methods and Costs of Contact Tracing". (2021) Mbivnjo, Etheldreda L., Lynch, Mary, Huws, Jaci C.

Additional file 1 of Inequalities in the impact of COVID-19-associated disruptions on tuberculosis diagnosis by age and sex in 45 high TB burden countries. (2022) McQuaid, C. Finn, Henrion, Marc Y. R., Burke, Rachael M., MacPherson, Peter, Nzawa-Soko, Rebecca, Horton, Katherine C.

PERU MIGRANT Study. (2021) Miranda, J Jaime, Bernabé-Ortiz, Antonio, Carrillo-Larco, Rodrigo

The H3A Diabetes Study: A multi-centre study of the prevalence and environmental and genetic determinants of type 2 diabetes in sub-Saharan Africa. (Field Data collection 2015-2018). (2021) Motala, Ayesha, Adebamowo, Clement, Balde, Naby, Kaleebu, Pontiano, Kapiga, Saidi, Levitt, Naomi, Mayige, Mary, McCarthy, Mark, Nyirenda, Moffat, Heyderman, Robert, Oli, John, Rotimi, Charles, Sandhu, Manjinder, Sobngwi, Eugene, Smeeth, Liam, Kenneth, Ekoru

N

Uganda Liver Disease study – Dataset for analysis of liver, metabolic and cardiovascular parameters associated with mortality in the General Population Cohort. (2025) Newton, Robert, Matthews, Philippa, Campbell, Cori, Mugisha, Joseph, Kimono, Beatrice, Waddilove, Elizabeth, Makanga, Ronald, Wang, Tingyan, Seeley, Janet, Muzaale, Florence Nambaziira description

Moderate to severe malnutrition in severe anemia study. (2020) Nkosi-Gondwe, Thandile

O

kath-o-reilly/wbe_prevalence_england_python. (2022) O'Reilly, Kathleen M.

Liver function tests and fibrosis scores in a rural population in Africa. (2021) O’Hara, Geraldine, Mokaya, Jolynne, Hau, Jeffrey, Downs, Louise, Karabarinde, Alex, Asiki, Gershim, McNaughton, Anna, Seeley, Janet, Matthews, Philippa, Newton, Robert

P

Household and Parasitology Surveys, Kwale County, Kenya, 2015-2017. (2019) Pullan, Rachel L., Halliday, Katherine, Oswald, William, Mcharo, Carlos, Beaumont, Emma, Kepha, Stella, Witek-McManus, Stefan, Gichuki, Paul M., Allen, Elizabeth, Drake, Tom, Pitt, Catherine, Matendechero, Sultani, Gwayi-Chore, Marie Claire, Anderson, Roy M., Njenga, Sammy M., Brooker, Simon, Mwandawiro, Charles S.

rachaelpung/cruise_networks. (2022) Pung, Rachael

R

erees/leptoSerology. (2022) Rees, Eleanor

Time to acute kidney injury and its predictors among newly diagnosed Type 2 diabetic patients at government hospitals in Harari Region, East Ethiopia. S1 Data. (2019) Regassa, Lemma Demissie, Gete, Yigzaw Kebede, Mekonnen, Fantahun Ayenew

Ebola virus disease in the Democratic Republic of the Congo, 1976-2014: Figures and Data. (2015) Rosello, Alicia, Mossoko, Mathias, Flasche, Stefan, Vanhoek, Albert, Mbala, Placide, Camacho, Anton, Funk, Sebastian, Kucharski, Adam, Ilunga, Benoit Kebela, Edmunds, John, Piot, Peter, Baguelin, Marc, Tamfum, Jean-Jacques Muyembe description

S

Vector competence, vectorial capacity of Nyssorhynchus darlingi and the basic reproduction number of Plasmodium vivax in agricultural settlements in the Amazonian Region of Brazil. (2019) Sallum, Maria Anice M, Conn, Jan E, Bergo, Eduardo S, Laporta, Gabriel Z, Chaves, Leonardo SM, Bickersmith, Sara A, de Oliveira, Tatiane MP, Figueira, Elder Augusto G, Moresco, Gilberto, Lêuda, Olívêr, Struchiner, Claudio J, Yakob, Laith, Massad, Eduardo

SAGE Well-Being of Older People Study-2013, Wave 2. (2014) Seeley, Janet, Mugisha, Joseph, Suzman, Richard

Dataset for "Genomic characterisation of Salmonella enterica serovar Wangata isolates obtained from different sources reveals low genomic diversity". (2020) Simpson, Kelly M J, Mor, Siobhan M, Ward, Michael P, Collins, Julie, Flint, James, Hill-Cawthorne, Grant A, El Ghany, Moataz Abd

Additional file 1: of Identifying mixed Mycobacterium tuberculosis infections from whole genome sequence data. (2018) Sobkowiak, Benjamin, Glynn, Judith R., Houben, Rein M. G. J., Mallard, Kim, Phelan, Jody E., Guerra-Assunção, José Afonso, Banda, Louis, Mzembe, Themba, Viveiros, Miguel, McNerney, Ruth, Parkhill, Julian, Crampin, Amelia C., Clark, Taane G.

Data from: Human cytomegalovirus epidemiology and relationship to tuberculosis and cardiovascular disease risk factors in a rural Ugandan cohort. (2018) Stockdale, Lisa, Nash, Stephen, Nalwoga, Angela, Painter, Hannah, Asiki, Gershim, Fletcher, Helen, Newton, Robert

W

Reproducible Evidence: Practices to Enhance and Achieve Transparency (REPEAT). (2021) Wang, Shirley V, Sreedhara, Sushama Kattinakere, Schneeweiss, Sebastian, REPEAT Initiative

Table S4 from A global assessment of the impact of school closure in reducing COVID-19 spread. (2021) Wu, Joseph T., Mei, Shujiang, Luo, Sihui, Leung, Kathy, Liu, Di, Lv, Qiuying, Liu, Jian, Li, Yuan, Prem, Kiesha, Jit, Mark, Weng, Jianping, Feng, Tiejian, Zheng, Xueying, Leung, Gabriel M.