pegas: Population and Evolutionary Genetics Analysis System

Paradis, E; Kamvar, ZN; Jombart, T

; Brian, K and Frederic, M (2020). pegas: Population and Evolutionary Genetics Analysis System. [Dataset]. Zenodo. http://doi.org/10.5281/zenodo.3647668

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Functions for reading, writing, plotting, analysing, and manipulating allelic and haplotypic data, including from VCF files, and for the analysis of population nucleotide sequences and micro-satellites including coalescent analyses, linkage disequilibrium, population structure (Fst, Amova) and equilibrium (HWE), haplotype networks, minimum spanning tree and network, and median-joining networks.

Keywords

R package; Population genetic data

Item Type	Dataset
Resource Type	Resource Type Resource Description Software R script
Capture method	Simulation
Date	6 February 2020
Language(s) of written materials	English
Creator(s)	Paradis, E; Kamvar, ZN; Jombart, T ; Brian, K and Frederic, M
LSHTM Faculty/Department	Faculty of Epidemiology and Population Health > Dept of Infectious Disease Epidemiology (-2023)
Participating Institutions	London School of Hygiene & Tropical Medicine, London, United Kingdom
Date Deposited	18 Feb 2020 14:14
Last Modified	08 Jul 2021 12:52
Publisher	Zenodo