pegas: Population and Evolutionary Genetics Analysis System
Paradis, E; Kamvar, ZN; Jombart, T
; Brian, K and Frederic, M
(2020).
pegas: Population and Evolutionary Genetics Analysis System.
[Dataset].
Zenodo.
http://doi.org/10.5281/zenodo.3647668
; Brian, K and Frederic, M
(2020).
pegas: Population and Evolutionary Genetics Analysis System.
[Dataset].
Zenodo.
http://doi.org/10.5281/zenodo.3647668
Functions for reading, writing, plotting, analysing, and manipulating allelic and haplotypic data, including from VCF files, and for the analysis of population nucleotide sequences and micro-satellites including coalescent analyses, linkage disequilibrium, population structure (Fst, Amova) and equilibrium (HWE), haplotype networks, minimum spanning tree and network, and median-joining networks.
Keywords
R package; Population genetic data| Item Type | Dataset |
|---|---|
| Resource Type |
Resource Type Resource Description Software R script |
| Capture method | Simulation |
| Date | 6 February 2020 |
| Language(s) of written materials | English |
| Creator(s) |
Paradis, E; Kamvar, ZN; Jombart, T; Brian, K and Frederic, M
|
| LSHTM Faculty/Department | Faculty of Epidemiology and Population Health > Dept of Infectious Disease Epidemiology (-2023) |
| Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom |
| Date Deposited | 18 Feb 2020 14:14 |
| Last Modified | 08 Jul 2021 12:52 |
| Publisher | Zenodo |
No files available. Please consult associated links.
