Data capture method
Number of items: 76.
13 June 2006
  • Cardiovascular Risk Score Calculator. (2006) Pocock, Stuart, Bennett, Mike, Mccormack, Valerie, Gueyffier, François, Boutitie, Florent, Fagard, Robert H., Boissel, Jean-Pierre
  • 2012
  • Combining insecticide treated bed nets and indoor residual spraying for malaria vector control in Africa. (2012) Okumu, Fredros description
  • 8 September 2014
  • Source code for analysis of the zoonotic niche of Ebolavirus. (2014) Pigott, David M, Golding, Nick, Mylne, Adrian, Huang, Zhi, Henry, Andrew J, Weiss, Daniel J, Brady, Oliver J., Kraemer, Moritz UG, Smith, David L, Moyes, Catherine L, Bhatt, Samir, Gething, Peter W, Horby, Peter W, Bogoch, Isaac I, Brownstein, John S, Mekaru, Sumiko R, Tatem, Andrew J, Khan, Kamran, Hay, Simon I
  • 7 October 2014
  • Cost-Effectiveness of HIV Drug Resistance Testing to Inform Switching to Second Line Antiretroviral Therapy in Low Income Settings: Supporting material. (2014) Phillips, Andrew, Cambiano, Valentina, Nakagawa, Fumiyo, Magubu, Travor, Miners, Alec, Ford, Debbie, Pillay, Deenan, De Luca, Andrea, Lundgren, Jens, Revill, Paul
  • 10 April 2015
  • Characterizing the Transmission Potential of Zoonotic Infections from Minor Outbreaks: Simulation and Inference code. (2015) Kucharski, Adam, Edmunds, John description
  • 27 October 2015
  • Water Supply Interruptions and Suspected Cholera Incidence: A Time-Series Regression in the Democratic Republic of the Congo. S1 Table. (2015) Jeandron, Aurelie, Saidi, Jaime Mufitini, Kapama, Alois, Burhole, Manu, Birembano, Freddy, Vandevelde, Thierry, Gasparrini, Antonio, Armstrong, Ben, Cairncross, Sandy, Ensink, Jeroen description
  • January 2016
  • Cost-effectiveness of Ward Closure to Control Outbreaks of Norovirus Infection in UK National Health Service Hospitals: Epidemic simulation model. (2016) Sadique, Zia, Lopman, Ben, Cooper, Ben S, Edmunds, John
  • 14 March 2016
  • Multiple imputation methods for bivariate outcomes in cluster randomised trials: Supporting Information. (2016) Diaz-ordaz, Karla, Kenward, Mike, Gomes, Manuel, Grieve, Richard description
  • 17 May 2016
  • S1 Dataset for "Transmission Dynamics of Zika Virus in Island Populations: A Modelling Analysis of the 2013–14 French Polynesia Outbreak". (2016) Kucharski, Adam J., Funk, Sebastian, Eggo, Rosalind M., Mallet, Henri-Pierre, Edmunds, W. John, Nilles, Eric J. description
  • 2017
  • Poisson Regression Dataset for "Learning Clinical Epidemiology with R" tutorial. (2017) Marks, Michael, Roberts, Chrissy description
  • 15 January 2017
  • R Code for: "Modelling lagged associations in environmental time series data: a simulation study". (2017) Gasparrini, Antonio
  • 19 January 2017
  • Optimal Whitening and Decorrelation. (2017) Kessy, Agnan, Lewin, Alex, Strimmer, Korbinian
  • 6 March 2017
  • Elimination of visceral leishmaniasis in the Indian subcontinent: a comparison of predictions from three transmission models. (2017) Le Rutte, Epke A., Chapman, Lloyd A.C., Coffeng, Luc E., Jervis, Sarah, Hasker, Epco C., Dwivedi, Shweta, Karthick, Morchan, Das, Aritra, Mahapatra, Tanmay, Chaudhuri, Indrajit, Boelaert, Marleen C., Medley, Graham F., Srikantiah, Sridhar, Hollingsworth, T. Deirdre, de Vlas, Sake J.
  • 9 March 2017
  • migariane/meltmle: Ensemble Learning Targeted Maximum Likelihood Estimation for Stata users. (2017) Luque, Miguel Angel
  • 10 March 2017
  • Additional file 3: of Investigating the pertussis resurgence in England and Wales, and options for future control. (2017) Choi, Yoon Hong, Campbell, Helen, Amirthalingam, Gayatri, Van Hoek, Albert Jan, Miller, Elizabeth folder_zip
  • 14 September 2017
  • Tractable Bayesian variable selection: beyond normality. (2017) Rossell, David, Rubio, Francisco J.
  • 30 October 2017
  • R files for: Mathematical Modeling of Programmatic Requirements for Yaws Eradication. (2017) Marks, Michael, Mitja, Oriol, Fitzpatrick, Christopher, Asiedu, Kingsley, Solomon, Anthony W., Mabey, David, Funk, Sebastian description
  • 2 November 2017
  • R code: why sensitive bacteria are resistant to hospital infection control. (2017) van Kleef, Esther, Luangasanatip, Nantasit, Bonten, Marc JM, Cooper, Ben S
  • 4 February 2018
  • Cost-Effectiveness of Take-Home Naloxone for the Prevention of Overdose Fatalities among Heroin Users in the United Kingdom: Supplemental Materials. (2018) Langham, Sue, Wright, Antony, Kenworthy, James, Grieve, Richard, Dunlop, William C.N.
  • 15 February 2018
  • Computer code of the coinfection model. (2018) Eggo, Rosalind M. description
  • 19 June 2018
  • MI-TVE. (2018) Keogh, Ruth
  • 3 August 2018
  • MOESM1 of An inexpensive open source 3D-printed membrane feeder for human malaria transmission studies. (2018) Witmer, Kathrin, Sherrard-Smith, Ellie, Straschil, Ursula, Tunnicliff, Mark, Baum, Jake, Delves, Michael
  • MOESM2 of An inexpensive open source 3D-printed membrane feeder for human malaria transmission studies. (2018) Witmer, Kathrin, Sherrard-Smith, Ellie, Straschil, Ursula, Tunnicliff, Mark, Baum, Jake, Delves, Michael
  • 27 November 2018
  • Mathematical model projections for: "Application of provincial data in mathematical modelling to inform sub-national tuberculosis program decision-making in South Africa". (2018) Sumner, Tom folder_zip
  • 19 January 2019
  • R Code accompanying the manuscript "Assessing the performance of real-time epidemic forecasts: A case study of Ebola in the Western Area region of Sierra Leone, 2014-15". (2019) Funk, Sebastian
  • 12 March 2019
  • Real-time analysis of the diphtheria outbreak in forcibly displaced Myanmar nationals in Bangladesh. (2019) Finger, Flavio, Funk, Sebastian, White, Kate, Siddiqui, M. Ruby, Edmunds, W. John, Kucharski, Adam J.
  • 29 June 2019
  • SWPERMUTE: Stata module to compute Permutation tests for Stepped-Wedge Cluster-Randomised Trials. (2019) Thompson, Jennifer
  • 22 July 2019
  • Measurement error correction methods applied to NHANES data. (2019) Keogh, Ruth, Bartlett, Jonathan
  • 17 October 2019
  • Denvaxia-in-Phillippines. (2019) Flasche, Stefan
  • 11 November 2019
  • gasparrini/2019_sera_StatMed_Rcode. (2019) Gasparrini, Antonio
  • 30 January 2020
  • epiforecasts/WuhanSeedingVsTransmission: Resubmission to Wellcome Open Research. (2020) Abbott, Sam, Funk, Sebastian, Munday, James D., Hellewell, Joel
  • 31 January 2020
  • Probability of a large 2019-nCoV outbreak following introduction of cases. (2020) Kucharski, Adam J., Russell, Timothy W., Diamond, Charlie, CMMID nCoV working group, Funk, Sebastian, Eggo, Rosalind M.
  • 6 February 2020
  • pegas: Population and Evolutionary Genetics Analysis System. (2020) Paradis, Emmanuel, Kamvar, Zhian N., Jombart, Thibaut, Brian, Knaus, Frederic, Michaud
  • 12 February 2020
  • Causal Sim code. (2020) Keogh, Ruth, Seaman, Shaun R., Gran, Jon Michael, Vansteelandt, Stijn
  • 13 February 2020
  • geosocial-outbreaker: Integrating geographical and social contact data to reconstruct transmission chains. (2020) Robert, Alexis
  • 28 February 2020
  • Feasibility of controlling COVID-19 outbreaks by isolation of cases and contacts. (2020) Hellewell, Joel, Abbott, Sam, Gimma, Amy, Bosse, Nikos, Jarvis, Christopher, Russell, Timothy, Munday, James, Kucharski, Adam, Edmunds, W John, Funk, Sebastian, Eggo, Rosalind, Sun, Fiona, Flasche, Stefan, Quilty, Billy, Davies, Nicholas, Liu, Yang, Clifford, Samuel, Klepac, Petra, Jit, Mark, Diamond, Charlie, Gibbs, Hamish, Van Zandvoort, Kevin
  • 3 March 2020
  • Inferring COVID-19 cases from deaths of confirmed cases. (2020) Jombart, Thibaut, Abbott, Sam, Gimma, Amy, Zandvoort, Kevin, Clifford, Samuel, Jarvis, Christopher, Russell, Timothy, Funk, Sebastian, Gibbs, Hamish, Eggo, Rosalind M., Kucharski, Adam J., CMMID COVID-19 Working Group, Edmunds, W. John
  • 18 March 2020
  • Age-structured SEIR model for COVID-19 outbreak in Wuhan, China. (2020) Prem, Kiesha, Liu, Yang, Russell, Timothy W, Kucharski, Adam J, Eggo, Rosalind M, Davies, Nicholas G, Jit, Mark, Klepac, Petra, Flasche, Stefan, Clifford, Samuel, Pearson, Carl A B, Munday, James D, Abbott, Sam, Gibbs, Hamish, Rosello, Alicia, Quilty, Billy J, Jombart, Thibaut, Sun, Fiona, Diamond, Charlie, Gimma, Amy, Van zandvoort, Kevin, Funk, Sebastian, Jarvis, Christopher I, Edmunds, W John, Bosse, Nikos I, Hellewell, Joel
  • 9 April 2020
  • thibautjombart/covid19_bed_occupancy: Second major release. (2020) Jombart, Thibaut, Clifford, Samuel, Pearson, Carl A. B. Pearson, Rees, Eleanor, Nightingale, Emily, Procter, Simon, Knight, Gwen
  • 20 April 2020
  • StefanFlasche/Pneumo_Trans_Inf. (2020) Flasche, Stefan
  • 11 May 2020
  • skissler/haslemere. (2020) Kissler, Stephen M., Klepac, Petra, Tang, Maria, Conlan, Andrew J.K., Gog, Julia R.
  • 24 May 2020
  • epiforecasts/covid: Submission release. (2020) Abbott, Sam, Sherratt, Katharine, Funk, Sebastian, Hellewell, Joel
  • 25 May 2020
  • mquaife/kenya_mixing. (2020) Quaife, Matthew
  • 10 June 2020
  • trendbreaker 0.1.0: Detect Changes in Temporal Trends. (2020) Jombart, Thibaut, Schumacher, Dirk
  • 11 June 2020
  • Projections of COVID-19 epidemics in LMIC countries. (2020) Pearson, Carl A. B., Van zandvoort, Kevin, Jarvis, Christopher I., Davies, Nicholas G., Thompson, Sam, Checchi, Francesco, Jit, Mark, Eggo, Rosalind M., LSHTM CMMID COVID-19 Working Group
  • vaccine-impact/epi_covid. (2020) Abbas, Kaja M.
  • 8 July 2020
  • Reconstructing the global dynamics of unreported COVID-19 cases and infections. (2020) Russell, Timothy W., Golding, Nick, Hellewell, Joel, Abbott, Sam, Pearson, Carl A B, Van zandvoort, Kevin, Jarvis, Christopher I, Gibbs, Hamish, Liu, Yang, Eggo, Rosalind M., Edmunds, W. John, Kucharski, Adam J., CMMID COVID-19 working group
  • 24 July 2020
  • cmmid/travel_screening_strategies. (2020) Clifford, Samuel, Quilty, Billy J., Russell, Timothy W., Liu, Yang, Chan, Yung-Wai Desmond, Pearson, Carl A. B., Eggo, Rosalind M., Endo, Akira, CMMID COVID-19 Working Group, Flasche, Stefan, Edmunds, W. John
  • 19 August 2020
  • Machine learning methods to investigate segments of the British consumer food market and to predict weight status: Source code. (2020) Greener, Robert
  • 2 September 2020
  • RtD3. (2020) Gibbs, Hamish, Abbott, Sam, Funk, Sebastian
  • 3 September 2020
  • tsleng93/SocialBubble: Social Bubble (including density dependence). (2020) Leng, Trystan, Flasche, Stefan
  • 7 September 2020
  • yangclaraliu/covid_surveillance_strategy: WOR Submission. (2020) Liu, Yang, Gong, Wenfeng, Clifford, Samuel, Sundaram, Maria E, CMMID COVID-19 Working Group, Jit, Mark, Flasche, Stefan, Klepac, Petra
  • 21 September 2020
  • lwyakob/COVIDsaturates. (2020) Yakob, Laith, Nightingale, Emily
  • 24 September 2020
  • CLAN: Stata module to perform cluster-level analysis of cluster randomised trials. (2020) Nash, Stephen, Thompson, Jennifer, Leurent, Baptiste
  • 25 September 2020
  • Comparison of small-sample standard-error corrections for generalised estimating equations in stepped wedge cluster randomised trials with a binary outcome: A simulation study. (2020) Thompson, Jennifer
  • Interstate trade of cereals in India. (2020) Harris, Francesca grid_on
  • 16 November 2020
  • gasparrini/2019_vicedo-cabrera_Epidem_Rcodedata. (2020) Gasparrini, Antonio
  • 15 December 2020
  • migariane/TutorialCausalInferenceEstimators: Computational Causal Inference for Applied Researchers. (2020) Fernandez, Miguel Angel Luque, Zivich, Paul, Smith, Matthew James
  • 17 February 2021
  • LloydChapman/COVID_homeless_modelling. (2021) Chapman, Lloyd A. C.
  • 19 February 2021
  • jdmunday/SchoolHouseholdNetworksCOVID: Initial release. (2021) Munday, James D.
  • 2 April 2021
  • cmmid/quar_test_contact_tracing. (2021) Quilty, Billy
  • 31 May 2021
  • anavica/mcc_ccattr_NCC. (2021) Vicedo-Cabrera, A. M., Gasparrini, Antonio, Royé, Dominic
  • 1 June 2021
  • BugBunny/oRphanhood. (2021) Timaeus, Ian
  • 10 June 2021
  • cmmid/covid_quar_test_import_risk. (2021) Quilty, Billy
  • 5 July 2021
  • Simulation results for "COVID-19 vaccination in Sindh Province, Pakistan: a modelling study of health impact and cost-effectiveness". (2021) Pearson, Carl A B, Bozzani, Fiammetta, Procter, Simon R, Davies, Nicholas G, Huda, Maryam, Jensen, Henning Tarp, Keogh-Brown, Marcus, Khalid, Muhammad, Sweeney, Sedona, Torres-Rueda, Sergio, Eggo, Rosalind M, Vassall, Anna, Jit, Mark
  • 27 July 2021
  • Software and results for: An agent-based model for simulating the impact of social norms on active commuting interventions. (2021) Greener, Robert, Lewis, Daniel, Reades, Jon, Miles, Simon, Cummins, Steven
  • 8 February 2022
  • Software and results for: Incorporating social norms into a configurable agent-based model of commuting behaviour. (2022) Greener, Robert, Lewis, Daniel, Reades, Jon, Miles, Simon, Cummins, Steven
  • 28 June 2022
  • Decision Modelling for Health Economic Evaluation - Exercises. (2022) Briggs, Andrew folder_zip
  • 5 July 2022
  • Alternative Covid-19 mitigation measures in school classrooms: Analysis using an agent-based model of SARS-CoV-2 transmission. (2022) Woodhouse, Mark, Aspinall, Willy, Sparks, RSJ, Brooks-Pollock, Ellen, Relton, Caroline L.
  • 17 August 2022
  • Stan models for diagnostic tests accuracy simulation; Accompaniment for Journal Article. (2022) Keddie, Suzanne, Bärenbold, Oliver, Keogh, Ruth, Bradley, John
  • 15 January 2023
  • rachaelpung/covid_missed_infections. (2023) Pung, Rachael
  • 14 September 2023
  • MINT-data-v20230208. (2023) Churcher, Thomas, Stopard, Isaac, Hamlet, Arran, Dee, Dominic, Sanou, Antoine, Rowland, Mark, Guelbeogo, Moussa, Emidi, Basiliana, Mosha, Jacklin, Challenger, Joseph, Denz, Adrian, Charles, Giovanni, Russell, Emma, Fitzjohn, Rich, Winskill, Pete, Fornadel, Christen, Mclean, Tom, Digre, Peder, Wagman, Joe, Mosha, Frank, Cook, Jackie, Akogbéto, Martin, Djogbenou, Luc, Ranson, Hilary, Manjurano, Alphaxard, N'fale, Sagnon, Protopopoff, Natacha, Accrombessi, Manfred, Ngufor, Corine, Foster, Geraldine, Sherrard-Smith, Ellie
  • 19 October 2023
  • Data for: "Neonatal mortality risk of large for gestational age and macrosomic live births in 15 countries including 115.6 million nationwide linked records, 2000–2020". (2023) Suárez-Idueta, Lorena, Ohuma, Eric O., Chang, Chia-Jung, Hazel, Elizabeth A., Yargawa, Judith, Okwaraji, Yemisrach B., Bradley, Ellen, Gordon, Adrienne, Sexton, Jessica, Lawford, Harriet, Paixao cruz, Enny S., Falcão, Ila Rocha, Lisonkova, Sarka, Wen, Qi, Velebil, Petr, Jírová, Jitka, Horváth-Puhó, Erzsebet, Sørensen, Henrik Toft, Sakkeus, Luule, Abuladze, Lili, Yunis, Khalid A., Bizri, Ayah Al, Alvarez Lopez, Sonia, Broeders, Lisa, van Dijk, A. E., Alyafei, Fawziya, AlQubaisi, Mai, Razaz, Neda, Söderling, Jonas, Smith, Lucy K., Matthews, Ruth, Lowry, Estelle, Rowland, Neil, Wood, Rachael, Monteath, Kirsten, Pereyra, Isabel, Pravia, Gabriella, Lawn, Joy E., Blencowe, Hannah description
  • 28 November 2023
  • epiforecasts/ringbp. (2023) Abbott, Sam, Hellewell, Joel, Lucas, Tim, Funk, Sebastian, Gimma, Amy
  • 23 October 2024
  • Synthetic datasets of the UK Biobank cohort. (2024) Gasparrini, Antonio, Vanoli, Jacopo
  • 28 October 2024
  • Projection of temperature-related mortality in 854 European cities under climate change and adaptation scenarios. (2024) Masselot, Pierre, Mistry, Malcolm N., Gasparrini, Antonio