Browse by Data capture method

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Number of items: 59.

13 June 2006

Pocock, S, Bennett, M, Mccormack, V, Gueyffier, F, Boutitie, F, Fagard, RH and Boissel, J (2006). Cardiovascular Risk Score Calculator. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.


Okumu, F (2012). Combining insecticide treated bed nets and indoor residual spraying for malaria vector control in Africa. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

8 September 2014

Pigott, DM, Golding, N, Mylne, A, Huang, Z, Henry, AJ, Weiss, DJ, Brady, OJ, Kraemer, MU, Smith, DL, Moyes, CL, Bhatt, S, Gething, PW, Horby, PW, Bogoch, II, Brownstein, JS, Mekaru, SR, Tatem, AJ, Khan, K and Hay, SI (2014). Source code for analysis of the zoonotic niche of Ebolavirus. [Data Collection]. GitHub, Inc..

7 October 2014

Phillips, A, Cambiano, V, Nakagawa, F, Magubu, T, Miners, A, Ford, D, Pillay, D, De Luca, A, Lundgren, J and Revill, P (2014). Cost-Effectiveness of HIV Drug Resistance Testing to Inform Switching to Second Line Antiretroviral Therapy in Low Income Settings: Supporting material. [Data Collection]. Figshare.

10 April 2015

Kucharski, A and Edmunds, J (2015). Characterizing the Transmission Potential of Zoonotic Infections from Minor Outbreaks: Simulation and Inference code. [Data Collection]. PLOS Computational Biology.

27 October 2015

Jeandron, A, Saidi, JM, Kapama, A, Burhole, M, Birembano, F, Vandevelde, T, Gasparrini, A, Armstrong, B, Cairncross, S and Ensink, J (2015). Water Supply Interruptions and Suspected Cholera Incidence: A Time-Series Regression in the Democratic Republic of the Congo. [Data Collection]. PLOS Medicine.

January 2016

Sadique, Z, Lopman, B, Cooper, BS and Edmunds, J (2016). Cost-effectiveness of Ward Closure to Control Outbreaks of Norovirus Infection in UK National Health Service Hospitals: Epidemic simulation model. [Data Collection]. Oxford University Press.

14 March 2016

Diaz-ordaz, K, Kenward, M, Gomes, M and Grieve, R (2016). Multiple imputation methods for bivariate outcomes in cluster randomised trials: Supporting Information. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

17 May 2016

Kucharski, AJ, Funk, S, Eggo, RM, Mallet, H, Edmunds, WJ and Nilles, EJ (2016). S1 Dataset for "Transmission Dynamics of Zika Virus in Island Populations: A Modelling Analysis of the 2013–14 French Polynesia Outbreak". [Data Collection]. PLoS Neglected Tropical Diseases.

1 September 2016

Choi, YH, Campbell, H, Amirthalingam, G, Van Hoek, AJ and Miller, E (2016). Investigating the pertussis resurgence in England and Wales, and options for future control. [Data Collection]. BMC Medicine.


Marks, M and Roberts, C (2017). Poisson Regression Dataset for "Learning Clinical Epidemiology with R" tutorial. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

15 January 2017

Gasparrini, A (2017). R Code for: "Modelling lagged associations in environmental time series data: a simulation study". [Data Collection]. Github.

19 January 2017

Kessy, A, Lewin, A and Strimmer, K (2017). Optimal Whitening and Decorrelation. [Data Collection]. Figshare.

6 March 2017

Le Rutte, EA, Chapman, LA, Coffeng, LE, Jervis, S, Hasker, EC, Dwivedi, S, Karthick, M, Das, A, Mahapatra, T, Chaudhuri, I, Boelaert, MC, Medley, GF, Srikantiah, S, Hollingsworth, TD and de Vlas, SJ (2017). Elimination of visceral leishmaniasis in the Indian subcontinent: a comparison of predictions from three transmission models. [Data Collection]. Epidemics.

9 March 2017

Luque, MA (2017). eltmle: Ensemble Learning Targeted Maximum Likelihood Estimation. [Data Collection]. GitHub.

14 September 2017

Rossell, D and Rubio, FJ (2017). Tractable Bayesian variable selection: beyond normality. [Data Collection]. Figshare.

30 October 2017

Marks, M, Mitja, O, Fitzpatrick, C, Asiedu, K, Solomon, AW, Mabey, D and Funk, S (2017). R files for: Mathematical Modeling of Programmatic Requirements for Yaws Eradication. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

2 November 2017

van Kleef, E, Luangasanatip, N, Bonten, MJ and Cooper, BS (2017). R code: why sensitive bacteria are resistant to hospital infection control. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

11 January 2018

Rentsch, CT, Kabudula, CW, Catlett, J, Beckles, D, Machemba, R, Mtenga, B, Masilela, N, Michael, D, Natalis, R, Urassa, M, Todd, J, Zaba, B and Reniers, G (2018). Point-of-contact Interactive Record Linkage (PIRL): A software tool to prospectively link demographic surveillance and health facility data. [Data Collection]. Gates Open Research.

4 February 2018

Langham, S, Wright, A, Kenworthy, J, Grieve, R and Dunlop, WC (2018). Cost-Effectiveness of Take-Home Naloxone for the Prevention of Overdose Fatalities among Heroin Users in the United Kingdom: Supplemental Materials. [Data Collection]. Value in Health.

15 February 2018

Eggo, RM (2018). Computer code of the coinfection model. [Data Collection]. PLOS Pathogens.

19 June 2018

Keogh, R (2018). MI-TVE. [Data Collection]. Github.

3 August 2018

Witmer, K, Sherrard-Smith, E, Straschil, U, Tunnicliff, M, Baum, J and Delves, M (2018). MOESM1 of An inexpensive open source 3D-printed membrane feeder for human malaria transmission studies. [Data Collection]. Figshare.

Witmer, K, Sherrard-Smith, E, Straschil, U, Tunnicliff, M, Baum, J and Delves, M (2018). MOESM2 of An inexpensive open source 3D-printed membrane feeder for human malaria transmission studies. [Data Collection]. Figshare.

27 November 2018

Sumner, T (2018). Mathematical model projections for: "Application of provincial data in mathematical modelling to inform sub-national tuberculosis program decision-making in South Africa". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

19 January 2019

Funk, S, Camacho, A, Kucharski, AJ, Lowe, R, Eggo, RM and Edmunds, WJ (2019). R Code accompanying the manuscript "Assessing the performance of real-time epidemic forecasts: A case study of Ebola in the Western Area region of Sierra Leone, 2014-15". [Data Collection]. Zenodo.

12 March 2019

Finger, F, Funk, S, White, K, Siddiqui, MR, Edmunds, WJ and Kucharski, AJ (2019). Real-time analysis of the diphtheria outbreak in forcibly displaced Myanmar nationals in Bangladesh. [Data Collection]. Figshare.

29 June 2019

Thompson, J (2019). SWPERMUTE: Stata module to compute Permutation tests for Stepped-Wedge Cluster-Randomised Trials. [Data Collection]. Statistical Software Components S458426, Boston College Department of Economics.

22 July 2019

Keogh, R and Bartlett, J (2019). Measurement error correction methods applied to NHANES data. [Data Collection]. Github.

17 October 2019

Flasche, S (2019). Denvaxia-in-Phillippines. [Data Collection]. Zenodo.

30 January 2020

Abbott, S, Funk, S, Munday, JD and Hellewell, J (2020). epiforecasts/WuhanSeedingVsTransmission: Resubmission to Wellcome Open Research. [Data Collection]. Zenodo.

31 January 2020

Kucharski, AJ, Russell, TW, Diamond, C, CMMID nCoV working group, Funk, S and Eggo, RM (2020). Probability of a large 2019-nCoV outbreak following introduction of cases. [Data Collection]. Github.

6 February 2020

Paradis, E, Kamvar, ZN, Jombart, T, Brian, K and Frederic, M (2020). pegas: Population and Evolutionary Genetics Analysis System. [Data Collection]. Zenodo.

12 February 2020

Keogh, R, Seaman, SR, Gran, JM and Vansteelandt, S (2020). Causal Sim code. [Data Collection]. Github.

13 February 2020

Robert, A (2020). geosocial-outbreaker: Integrating geographical and social contact data to reconstruct transmission chains. [Data Collection]. Github.

28 February 2020

Hellewell, J, Abbott, S, Gimma, A, Bosse, N, Jarvis, C, Russell, T, Munday, J, Kucharski, A, Edmunds, WJ, Funk, S, Eggo, R, Sun, F, Flasche, S, Quilty, B, Davies, N, Liu, Y, Clifford, S, Klepac, P, Jit, M, Diamond, C, Gibbs, H and Van Zandvoort, K (2020). Feasibility of controlling COVID-19 outbreaks by isolation of cases and contacts. [Data Collection]. Github.

3 March 2020

Jombart, T, Abbott, S, Gimma, A, Zandvoort, K, Clifford, S, Jarvis, C, Russell, T, Funk, S, Gibbs, H, Eggo, RM, Kucharski, AJ, CMMID COVID-19 Working Group and Edmunds, WJ (2020). Inferring COVID-19 cases from deaths of confirmed cases. [Data Collection]. CMMID Repository.

18 March 2020

Prem, K, Liu, Y, Russell, TW, Kucharski, AJ, Eggo, RM, Davies, N, Jit, M, Klepac, P, Flasche, S, Clifford, S, Pearson, CAB, Munday, JD, Abbott, S, Gibbs, H, Rosello, A, Quilty, BJ, Jombart, T, Sun, F, Diamond, C, Gimma, A, Van zandvoort, K, Funk, S, Jarvis, CI, Edmunds, WJ, Bosse, NI and Hellewell, J (2020). Age-structured SEIR model for COVID-19 outbreak in Wuhan, China. [Data Collection]. Github.

9 April 2020

Jombart, T, Clifford, S, Pearson, Carl A. B. Pearson, Rees, E, Nightingale, E, Procter, S and Knight, G (2020). thibautjombart/covid19_bed_occupancy: Second major release. [Data Collection]. Zenodo.

20 April 2020

Flasche, S (2020). StefanFlasche/Pneumo_Trans_Inf. [Data Collection]. Github.

24 May 2020

Abbott, S, Sherratt, K, Funk, S and Hellewell, J (2020). epiforecasts/covid: Submission release. [Data Collection]. Zenodo.

25 May 2020

Quaife, M (2020). mquaife/kenya_mixing. [Data Collection]. Github.

26 May 2020

Abbott, S, Hellewell, J, Funk, S and Clifford, S (2020). epiforecasts/EpiNow: Forecasting. [Data Collection]. Zenodo.

10 June 2020

Jombart, T and Schumacher, D (2020). trendbreaker 0.1.0: Detect Changes in Temporal Trends. [Data Collection]. Zenodo.

11 June 2020

Pearson, CAB, Van zandvoort, K, Jarvis, CI, Davies, NG, Thompson, S, Checchi, F, Jit, M, Eggo, RM and LSHTM CMMID COVID-19 Working Group (2020). Projections of COVID-19 epidemics in LMIC countries. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Abbas, KM (2020). vaccine-impact/epi_covid. [Data Collection]. Github.

8 July 2020

Russell, TW, Golding, N, Hellewell, J, Abbott, S, Pearson, CAB, Van zandvoort, K, Jarvis, CI, Gibbs, H, Liu, Y, Eggo, RM, Edmunds, WJ, Kucharski, AJ and CMMID COVID-19 working group (2020). Reconstructing the global dynamics of unreported COVID-19 cases and infections. [Data Collection]. Github.

23 July 2020

Abbott, S, Bevan, J, Sherratt, K, Gibbs, H, Finger, F, Hellewell, J, Campbell, P, Barks, P, , M, Haze, L and Meakin, S (2020). epiforecasts/covidregionaldata: Preliminary release candidate. [Data Collection]. Zenodo.

24 July 2020

Clifford, S, Quilty, BJ, Russell, TW, Liu, Y, Chan, YD, Pearson, CAB, Eggo, RM, Endo, A, CMMID COVID-19 Working Group, Flasche, S and Edmunds, WJ (2020). cmmid/travel_screening_strategies. [Data Collection]. Github.

19 August 2020

Greener, R (2020). Machine learning methods to investigate segments of the British consumer food market and to predict weight status: Source code. [Data Collection]. Zenodo.

2 September 2020

Gibbs, H, Abbott, S and Funk, S (2020). RtD3. [Data Collection]. Zenodo.

3 September 2020

Leng, T and Flasche, S (2020). tsleng93/SocialBubble: Social Bubble (including density dependence). [Data Collection]. Zenodo.

7 September 2020

Liu, Y, Gong, W, Clifford, S, Sundaram, ME, CMMID COVID-19 Working Group, Jit, M, Flasche, S and Klepac, P (2020). yangclaraliu/covid_surveillance_strategy: WOR Submission. [Data Collection]. Zenodo.

21 September 2020

Yakob, L and Nightingale, E (2020). lwyakob/COVIDsaturates. [Data Collection]. Github.

24 September 2020

Nash, S, Thompson, J and Leurent, B (2020). CLAN: Stata module to perform cluster-level analysis of cluster randomised trials. [Data Collection]. Statistical Software Components S458844, Boston College Department of Economics.

25 September 2020

Thompson, J (2020). Comparison of small-sample standard-error corrections for generalised estimating equations in stepped wedge cluster randomised trials with a binary outcome: A simulation study. [Data Collection]. Zenodo.

Harris, F (2020). Interstate trade of cereals in India. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

15 December 2020

Luque-Fernandez, MA, Zivich, P and Smith, MJ (2020). migariane/TutorialCausalInferenceEstimators: Computational Causal Inference for Applied Researchers. [Data Collection]. Zenodo.

2 April 2021

Quilty, B (2021). cmmid/quar_test_contact_tracing. [Data Collection]. Github.

This list was generated on Tue May 11 02:18:31 2021 BST.