Date Title Item Type No Grouping

Dataset

Machine learning-based equations for improved body composition estimation in Indian adults. (2025) Birk, Nick; Kulkarni, Bharati; Bhogadi, Santhi; Aggarwal, Aastha; Walia, Gagandeep Kaur; Gupta, Vipin; Rani, Usha; Mahajan, Hemant; Kinra, Sanjay; Mallinson, Poppy A. C.

Projection of temperature-related mortality in 854 European cities under climate change and adaptation scenarios. (2024) Masselot, Pierre; Mistry, Malcolm N.; Gasparrini, Antonio

Synthetic datasets of the UK Biobank cohort. (2024) Gasparrini, Antonio; Vanoli, Jacopo

epiforecasts/ringbp. (2023) Abbott, Sam; Hellewell, Joel; Lucas, Tim; Funk, Sebastian; Gimma, Amy

Data for: "Neonatal mortality risk of large for gestational age and macrosomic live births in 15 countries including 115.6 million nationwide linked records, 2000–2020". (2023) Suárez-Idueta, Lorena; Ohuma, Eric O.; Chang, Chia-Jung; Hazel, Elizabeth A.; Yargawa, Judith; Okwaraji, Yemisrach B.; Bradley, Ellen; Gordon, Adrienne; Sexton, Jessica; Lawford, Harriet; Paixao cruz, Enny S.; Falcão, Ila Rocha; Lisonkova, Sarka; Wen, Qi; Velebil, Petr; Jírová, Jitka; Horváth-Puhó, Erzsebet; Sørensen, Henrik Toft; Sakkeus, Luule; Abuladze, Lili; Yunis, Khalid A.; Bizri, Ayah Al; Alvarez Lopez, Sonia; Broeders, Lisa; van Dijk, A. E.; Alyafei, Fawziya; AlQubaisi, Mai; Razaz, Neda; Söderling, Jonas; Smith, Lucy K.; Matthews, Ruth; Lowry, Estelle; Rowland, Neil; Wood, Rachael; Monteath, Kirsten; Pereyra, Isabel; Pravia, Gabriella; Lawn, Joy E.; Blencowe, Hannah description

MINT-data-v20230208. (2023) Churcher, Thomas; Stopard, Isaac; Hamlet, Arran; Dee, Dominic; Sanou, Antoine; Rowland, Mark; Guelbeogo, Moussa; Emidi, Basiliana; Mosha, Jacklin; Challenger, Joseph; Denz, Adrian; Charles, Giovanni; Russell, Emma; Fitzjohn, Rich; Winskill, Pete; Fornadel, Christen; Mclean, Tom; Digre, Peder; Wagman, Joe; Mosha, Frank; Cook, Jackie; Akogbéto, Martin; Djogbenou, Luc; Ranson, Hilary; Manjurano, Alphaxard; N'fale, Sagnon; Protopopoff, Natacha; Accrombessi, Manfred; Ngufor, Corine; Foster, Geraldine; Sherrard-Smith, Ellie

rachaelpung/covid_missed_infections. (2023) Pung, Rachael

Stan models for diagnostic tests accuracy simulation; Accompaniment for Journal Article. (2022) Keddie, Suzanne; Bärenbold, Oliver; Keogh, Ruth; Bradley, John

Alternative Covid-19 mitigation measures in school classrooms: Analysis using an agent-based model of SARS-CoV-2 transmission. (2022) Woodhouse, Mark; Aspinall, Willy; Sparks, RSJ; Brooks-Pollock, Ellen; Relton, Caroline L.

Decision Modelling for Health Economic Evaluation - Exercises. (2022) Briggs, Andrew folder_zip

Software and results for: Incorporating social norms into a configurable agent-based model of commuting behaviour. (2022) Greener, Robert; Lewis, Daniel; Reades, Jon; Miles, Simon; Cummins, Steven

Software and results for: An agent-based model for simulating the impact of social norms on active commuting interventions. (2021) Greener, Robert; Lewis, Daniel; Reades, Jon; Miles, Simon; Cummins, Steven

Simulation results for "COVID-19 vaccination in Sindh Province, Pakistan: a modelling study of health impact and cost-effectiveness". (2021) Pearson, Carl A B; Bozzani, Fiammetta; Procter, Simon R; Davies, Nicholas G; Huda, Maryam; Jensen, Henning Tarp; Keogh-Brown, Marcus; Khalid, Muhammad; Sweeney, Sedona; Torres-Rueda, Sergio; Eggo, Rosalind M; Vassall, Anna; Jit, Mark

cmmid/covid_quar_test_import_risk. (2021) Quilty, Billy

BugBunny/oRphanhood. (2021) Timaeus, Ian

anavica/mcc_ccattr_NCC. (2021) Vicedo-Cabrera, A. M.; Gasparrini, Antonio; Royé, Dominic

cmmid/quar_test_contact_tracing. (2021) Quilty, Billy

jdmunday/SchoolHouseholdNetworksCOVID: Initial release. (2021) Munday, James D.

LloydChapman/COVID_homeless_modelling. (2021) Chapman, Lloyd A. C.

migariane/TutorialCausalInferenceEstimators: Computational Causal Inference for Applied Researchers. (2020) Fernandez, Miguel Angel Luque; Zivich, Paul; Smith, Matthew James

gasparrini/2019_vicedo-cabrera_Epidem_Rcodedata. (2020) Gasparrini, Antonio

Comparison of small-sample standard-error corrections for generalised estimating equations in stepped wedge cluster randomised trials with a binary outcome: A simulation study. (2020) Thompson, Jennifer

Interstate trade of cereals in India. (2020) Harris, Francesca grid_on

CLAN: Stata module to perform cluster-level analysis of cluster randomised trials. (2020) Nash, Stephen; Thompson, Jennifer; Leurent, Baptiste

lwyakob/COVIDsaturates. (2020) Yakob, Laith; Nightingale, Emily

yangclaraliu/covid_surveillance_strategy: WOR Submission. (2020) Liu, Yang; Gong, Wenfeng; Clifford, Samuel; Sundaram, Maria E; CMMID COVID-19 Working Group; Jit, Mark; Flasche, Stefan; Klepac, Petra

tsleng93/SocialBubble: Social Bubble (including density dependence). (2020) Leng, Trystan; Flasche, Stefan

RtD3. (2020) Gibbs, Hamish; Abbott, Sam; Funk, Sebastian

Machine learning methods to investigate segments of the British consumer food market and to predict weight status: Source code. (2020) Greener, Robert

cmmid/travel_screening_strategies. (2020) Clifford, Samuel; Quilty, Billy J.; Russell, Timothy W.; Liu, Yang; Chan, Yung-Wai Desmond; Pearson, Carl A. B.; Eggo, Rosalind M.; Endo, Akira; CMMID COVID-19 Working Group; Flasche, Stefan; Edmunds, W. John

Reconstructing the global dynamics of unreported COVID-19 cases and infections. (2020) Russell, Timothy W.; Golding, Nick; Hellewell, Joel; Abbott, Sam; Pearson, Carl A B; Van zandvoort, Kevin; Jarvis, Christopher I; Gibbs, Hamish; Liu, Yang; Eggo, Rosalind M.; Edmunds, W. John; Kucharski, Adam J.; CMMID COVID-19 working group

Projections of COVID-19 epidemics in LMIC countries. (2020) Pearson, Carl A. B.; Van zandvoort, Kevin; Jarvis, Christopher I.; Davies, Nicholas G.; Thompson, Sam; Checchi, Francesco; Jit, Mark; Eggo, Rosalind M.; LSHTM CMMID COVID-19 Working Group

vaccine-impact/epi_covid. (2020) Abbas, Kaja M.

trendbreaker 0.1.0: Detect Changes in Temporal Trends. (2020) Jombart, Thibaut; Schumacher, Dirk

mquaife/kenya_mixing. (2020) Quaife, Matthew

epiforecasts/covid: Submission release. (2020) Abbott, Sam; Sherratt, Katharine; Funk, Sebastian; Hellewell, Joel

skissler/haslemere. (2020) Kissler, Stephen M.; Klepac, Petra; Tang, Maria; Conlan, Andrew J.K.; Gog, Julia R.

StefanFlasche/Pneumo_Trans_Inf. (2020) Flasche, Stefan

thibautjombart/covid19_bed_occupancy: Second major release. (2020) Jombart, Thibaut; Clifford, Samuel; Pearson, Carl A. B. Pearson; Rees, Eleanor; Nightingale, Emily; Procter, Simon; Knight, Gwen

Age-structured SEIR model for COVID-19 outbreak in Wuhan, China. (2020) Prem, Kiesha; Liu, Yang; Russell, Timothy W; Kucharski, Adam J; Eggo, Rosalind M; Davies, Nicholas G; Jit, Mark; Klepac, Petra; Flasche, Stefan; Clifford, Samuel; Pearson, Carl A B; Munday, James D; Abbott, Sam; Gibbs, Hamish; Rosello, Alicia; Quilty, Billy J; Jombart, Thibaut; Sun, Fiona; Diamond, Charlie; Gimma, Amy; Van zandvoort, Kevin; Funk, Sebastian; Jarvis, Christopher I; Edmunds, W John; Bosse, Nikos I; Hellewell, Joel

Inferring COVID-19 cases from deaths of confirmed cases. (2020) Jombart, Thibaut; Abbott, Sam; Gimma, Amy; Zandvoort, Kevin; Clifford, Samuel; Jarvis, Christopher; Russell, Timothy; Funk, Sebastian; Gibbs, Hamish; Eggo, Rosalind M.; Kucharski, Adam J.; CMMID COVID-19 Working Group; Edmunds, W. John

Feasibility of controlling COVID-19 outbreaks by isolation of cases and contacts. (2020) Hellewell, Joel; Abbott, Sam; Gimma, Amy; Bosse, Nikos; Jarvis, Christopher; Russell, Timothy; Munday, James; Kucharski, Adam; Edmunds, W John; Funk, Sebastian; Eggo, Rosalind; Sun, Fiona; Flasche, Stefan; Quilty, Billy; Davies, Nicholas; Liu, Yang; Clifford, Samuel; Klepac, Petra; Jit, Mark; Diamond, Charlie; Gibbs, Hamish; Van Zandvoort, Kevin

geosocial-outbreaker: Integrating geographical and social contact data to reconstruct transmission chains. (2020) Robert, Alexis

Causal Sim code. (2020) Keogh, Ruth; Seaman, Shaun R.; Gran, Jon Michael; Vansteelandt, Stijn

pegas: Population and Evolutionary Genetics Analysis System. (2020) Paradis, Emmanuel; Kamvar, Zhian N.; Jombart, Thibaut; Brian, Knaus; Frederic, Michaud

Probability of a large 2019-nCoV outbreak following introduction of cases. (2020) Kucharski, Adam J.; Russell, Timothy W.; Diamond, Charlie; CMMID nCoV working group; Funk, Sebastian; Eggo, Rosalind M.

epiforecasts/WuhanSeedingVsTransmission: Resubmission to Wellcome Open Research. (2020) Abbott, Sam; Funk, Sebastian; Munday, James D.; Hellewell, Joel

gasparrini/2019_sera_StatMed_Rcode. (2019) Gasparrini, Antonio

Denvaxia-in-Phillippines. (2019) Flasche, Stefan

Measurement error correction methods applied to NHANES data. (2019) Keogh, Ruth; Bartlett, Jonathan

SWPERMUTE: Stata module to compute Permutation tests for Stepped-Wedge Cluster-Randomised Trials. (2019) Thompson, Jennifer

Real-time analysis of the diphtheria outbreak in forcibly displaced Myanmar nationals in Bangladesh. (2019) Finger, Flavio; Funk, Sebastian; White, Kate; Siddiqui, M. Ruby; Edmunds, W. John; Kucharski, Adam J.

R Code accompanying the manuscript "Assessing the performance of real-time epidemic forecasts: A case study of Ebola in the Western Area region of Sierra Leone, 2014-15". (2019) Funk, Sebastian

Mathematical model projections for: "Application of provincial data in mathematical modelling to inform sub-national tuberculosis program decision-making in South Africa". (2018) Sumner, Tom folder_zip

MOESM1 of An inexpensive open source 3D-printed membrane feeder for human malaria transmission studies. (2018) Witmer, Kathrin; Sherrard-Smith, Ellie; Straschil, Ursula; Tunnicliff, Mark; Baum, Jake; Delves, Michael

MOESM2 of An inexpensive open source 3D-printed membrane feeder for human malaria transmission studies. (2018) Witmer, Kathrin; Sherrard-Smith, Ellie; Straschil, Ursula; Tunnicliff, Mark; Baum, Jake; Delves, Michael

MI-TVE. (2018) Keogh, Ruth

Computer code of the coinfection model. (2018) Eggo, Rosalind M. description

Cost-Effectiveness of Take-Home Naloxone for the Prevention of Overdose Fatalities among Heroin Users in the United Kingdom: Supplemental Materials. (2018) Langham, Sue; Wright, Antony; Kenworthy, James; Grieve, Richard; Dunlop, William C.N.

R code: why sensitive bacteria are resistant to hospital infection control. (2017) van Kleef, Esther; Luangasanatip, Nantasit; Bonten, Marc JM; Cooper, Ben S

R files for: Mathematical Modeling of Programmatic Requirements for Yaws Eradication. (2017) Marks, Michael; Mitja, Oriol; Fitzpatrick, Christopher; Asiedu, Kingsley; Solomon, Anthony W.; Mabey, David; Funk, Sebastian description

Tractable Bayesian variable selection: beyond normality. (2017) Rossell, David; Rubio, Francisco J.

Additional file 3: of Investigating the pertussis resurgence in England and Wales, and options for future control. (2017) Choi, Yoon Hong; Campbell, Helen; Amirthalingam, Gayatri; Van Hoek, Albert Jan; Miller, Elizabeth folder_zip

migariane/meltmle: Ensemble Learning Targeted Maximum Likelihood Estimation for Stata users. (2017) Luque, Miguel Angel

Elimination of visceral leishmaniasis in the Indian subcontinent: a comparison of predictions from three transmission models. (2017) Le Rutte, Epke A.; Chapman, Lloyd A.C.; Coffeng, Luc E.; Jervis, Sarah; Hasker, Epco C.; Dwivedi, Shweta; Karthick, Morchan; Das, Aritra; Mahapatra, Tanmay; Chaudhuri, Indrajit; Boelaert, Marleen C.; Medley, Graham F.; Srikantiah, Sridhar; Hollingsworth, T. Deirdre; de Vlas, Sake J.

Optimal Whitening and Decorrelation. (2017) Kessy, Agnan; Lewin, Alex; Strimmer, Korbinian

R Code for: "Modelling lagged associations in environmental time series data: a simulation study". (2017) Gasparrini, Antonio

Poisson Regression Dataset for "Learning Clinical Epidemiology with R" tutorial. (2017) Marks, Michael; Roberts, Chrissy description

S1 Dataset for "Transmission Dynamics of Zika Virus in Island Populations: A Modelling Analysis of the 2013–14 French Polynesia Outbreak". (2016) Kucharski, Adam J.; Funk, Sebastian; Eggo, Rosalind M.; Mallet, Henri-Pierre; Edmunds, W. John; Nilles, Eric J. description

Multiple imputation methods for bivariate outcomes in cluster randomised trials: Supporting Information. (2016) Diaz-ordaz, Karla; Kenward, Mike; Gomes, Manuel; Grieve, Richard description

Cost-effectiveness of Ward Closure to Control Outbreaks of Norovirus Infection in UK National Health Service Hospitals: Epidemic simulation model. (2016) Sadique, Zia; Lopman, Ben; Cooper, Ben S; Edmunds, John

Water Supply Interruptions and Suspected Cholera Incidence: A Time-Series Regression in the Democratic Republic of the Congo. S1 Table. (2015) Jeandron, Aurelie; Saidi, Jaime Mufitini; Kapama, Alois; Burhole, Manu; Birembano, Freddy; Vandevelde, Thierry; Gasparrini, Antonio; Armstrong, Ben; Cairncross, Sandy; Ensink, Jeroen description

Characterizing the Transmission Potential of Zoonotic Infections from Minor Outbreaks: Simulation and Inference code. (2015) Kucharski, Adam; Edmunds, John description

Cost-Effectiveness of HIV Drug Resistance Testing to Inform Switching to Second Line Antiretroviral Therapy in Low Income Settings: Supporting material. (2014) Phillips, Andrew; Cambiano, Valentina; Nakagawa, Fumiyo; Magubu, Travor; Miners, Alec; Ford, Debbie; Pillay, Deenan; De Luca, Andrea; Lundgren, Jens; Revill, Paul

Source code for analysis of the zoonotic niche of Ebolavirus. (2014) Pigott, David M; Golding, Nick; Mylne, Adrian; Huang, Zhi; Henry, Andrew J; Weiss, Daniel J; Brady, Oliver J.; Kraemer, Moritz UG; Smith, David L; Moyes, Catherine L; Bhatt, Samir; Gething, Peter W; Horby, Peter W; Bogoch, Isaac I; Brownstein, John S; Mekaru, Sumiko R; Tatem, Andrew J; Khan, Kamran; Hay, Simon I

Combining insecticide treated bed nets and indoor residual spraying for malaria vector control in Africa. (2012) Okumu, Fredros description

Cardiovascular Risk Score Calculator. (2006) Pocock, Stuart; Bennett, Mike; Mccormack, Valerie; Gueyffier, François; Boutitie, Florent; Fagard, Robert H.; Boissel, Jean-Pierre