Date Item Type No Grouping

Dataset

Projection of temperature-related mortality in 854 European cities under climate change and adaptation scenarios. (2024) Masselot, Pierre, Mistry, Malcolm N., Gasparrini, Antonio

Synthetic datasets of the UK Biobank cohort. (2024) Gasparrini, Antonio, Vanoli, Jacopo

epiforecasts/ringbp. (2023) Abbott, Sam, Hellewell, Joel, Lucas, Tim, Funk, Sebastian, Gimma, Amy

Data for: "Neonatal mortality risk of large for gestational age and macrosomic live births in 15 countries including 115.6 million nationwide linked records, 2000–2020". (2023) Suárez-Idueta, Lorena, Ohuma, Eric O., Chang, Chia-Jung, Hazel, Elizabeth A., Yargawa, Judith, Okwaraji, Yemisrach B., Bradley, Ellen, Gordon, Adrienne, Sexton, Jessica, Lawford, Harriet, Paixao cruz, Enny S., Falcão, Ila Rocha, Lisonkova, Sarka, Wen, Qi, Velebil, Petr, Jírová, Jitka, Horváth-Puhó, Erzsebet, Sørensen, Henrik Toft, Sakkeus, Luule, Abuladze, Lili, Yunis, Khalid A., Bizri, Ayah Al, Alvarez Lopez, Sonia, Broeders, Lisa, van Dijk, A. E., Alyafei, Fawziya, AlQubaisi, Mai, Razaz, Neda, Söderling, Jonas, Smith, Lucy K., Matthews, Ruth, Lowry, Estelle, Rowland, Neil, Wood, Rachael, Monteath, Kirsten, Pereyra, Isabel, Pravia, Gabriella, Lawn, Joy E., Blencowe, Hannah description

MINT-data-v20230208. (2023) Churcher, Thomas, Stopard, Isaac, Hamlet, Arran, Dee, Dominic, Sanou, Antoine, Rowland, Mark, Guelbeogo, Moussa, Emidi, Basiliana, Mosha, Jacklin, Challenger, Joseph, Denz, Adrian, Charles, Giovanni, Russell, Emma, Fitzjohn, Rich, Winskill, Pete, Fornadel, Christen, Mclean, Tom, Digre, Peder, Wagman, Joe, Mosha, Frank, Cook, Jackie, Akogbéto, Martin, Djogbenou, Luc, Ranson, Hilary, Manjurano, Alphaxard, N'fale, Sagnon, Protopopoff, Natacha, Accrombessi, Manfred, Ngufor, Corine, Foster, Geraldine, Sherrard-Smith, Ellie

rachaelpung/covid_missed_infections. (2023) Pung, Rachael

Stan models for diagnostic tests accuracy simulation; Accompaniment for Journal Article. (2022) Keddie, Suzanne, Bärenbold, Oliver, Keogh, Ruth, Bradley, John

Alternative Covid-19 mitigation measures in school classrooms: Analysis using an agent-based model of SARS-CoV-2 transmission. (2022) Woodhouse, Mark, Aspinall, Willy, Sparks, RSJ, Brooks-Pollock, Ellen, Relton, Caroline L.

Decision Modelling for Health Economic Evaluation - Exercises. (2022) Briggs, Andrew folder_zip

Software and results for: Incorporating social norms into a configurable agent-based model of commuting behaviour. (2022) Greener, Robert, Lewis, Daniel, Reades, Jon, Miles, Simon, Cummins, Steven

Software and results for: An agent-based model for simulating the impact of social norms on active commuting interventions. (2021) Greener, Robert, Lewis, Daniel, Reades, Jon, Miles, Simon, Cummins, Steven

Simulation results for "COVID-19 vaccination in Sindh Province, Pakistan: a modelling study of health impact and cost-effectiveness". (2021) Pearson, Carl A B, Bozzani, Fiammetta, Procter, Simon R, Davies, Nicholas G, Huda, Maryam, Jensen, Henning Tarp, Keogh-Brown, Marcus, Khalid, Muhammad, Sweeney, Sedona, Torres-Rueda, Sergio, Eggo, Rosalind M, Vassall, Anna, Jit, Mark

cmmid/covid_quar_test_import_risk. (2021) Quilty, Billy

BugBunny/oRphanhood. (2021) Timaeus, Ian

anavica/mcc_ccattr_NCC. (2021) Vicedo-Cabrera, A. M., Gasparrini, Antonio, Royé, Dominic

cmmid/quar_test_contact_tracing. (2021) Quilty, Billy

jdmunday/SchoolHouseholdNetworksCOVID: Initial release. (2021) Munday, James D.

LloydChapman/COVID_homeless_modelling. (2021) Chapman, Lloyd A. C.

migariane/TutorialCausalInferenceEstimators: Computational Causal Inference for Applied Researchers. (2020) Fernandez, Miguel Angel Luque, Zivich, Paul, Smith, Matthew James

gasparrini/2019_vicedo-cabrera_Epidem_Rcodedata. (2020) Gasparrini, Antonio

Comparison of small-sample standard-error corrections for generalised estimating equations in stepped wedge cluster randomised trials with a binary outcome: A simulation study. (2020) Thompson, Jennifer

Interstate trade of cereals in India. (2020) Harris, Francesca grid_on

CLAN: Stata module to perform cluster-level analysis of cluster randomised trials. (2020) Nash, Stephen, Thompson, Jennifer, Leurent, Baptiste

lwyakob/COVIDsaturates. (2020) Yakob, Laith, Nightingale, Emily

yangclaraliu/covid_surveillance_strategy: WOR Submission. (2020) Liu, Yang, Gong, Wenfeng, Clifford, Samuel, Sundaram, Maria E, CMMID COVID-19 Working Group, Jit, Mark, Flasche, Stefan, Klepac, Petra

tsleng93/SocialBubble: Social Bubble (including density dependence). (2020) Leng, Trystan, Flasche, Stefan

RtD3. (2020) Gibbs, Hamish, Abbott, Sam, Funk, Sebastian

Machine learning methods to investigate segments of the British consumer food market and to predict weight status: Source code. (2020) Greener, Robert

cmmid/travel_screening_strategies. (2020) Clifford, Samuel, Quilty, Billy J., Russell, Timothy W., Liu, Yang, Chan, Yung-Wai Desmond, Pearson, Carl A. B., Eggo, Rosalind M., Endo, Akira, CMMID COVID-19 Working Group, Flasche, Stefan, Edmunds, W. John

Reconstructing the global dynamics of unreported COVID-19 cases and infections. (2020) Russell, Timothy W., Golding, Nick, Hellewell, Joel, Abbott, Sam, Pearson, Carl A B, Van zandvoort, Kevin, Jarvis, Christopher I, Gibbs, Hamish, Liu, Yang, Eggo, Rosalind M., Edmunds, W. John, Kucharski, Adam J., CMMID COVID-19 working group

Projections of COVID-19 epidemics in LMIC countries. (2020) Pearson, Carl A. B., Van zandvoort, Kevin, Jarvis, Christopher I., Davies, Nicholas G., Thompson, Sam, Checchi, Francesco, Jit, Mark, Eggo, Rosalind M., LSHTM CMMID COVID-19 Working Group

vaccine-impact/epi_covid. (2020) Abbas, Kaja M.

trendbreaker 0.1.0: Detect Changes in Temporal Trends. (2020) Jombart, Thibaut, Schumacher, Dirk

mquaife/kenya_mixing. (2020) Quaife, Matthew

epiforecasts/covid: Submission release. (2020) Abbott, Sam, Sherratt, Katharine, Funk, Sebastian, Hellewell, Joel

skissler/haslemere. (2020) Kissler, Stephen M., Klepac, Petra, Tang, Maria, Conlan, Andrew J.K., Gog, Julia R.

StefanFlasche/Pneumo_Trans_Inf. (2020) Flasche, Stefan

thibautjombart/covid19_bed_occupancy: Second major release. (2020) Jombart, Thibaut, Clifford, Samuel, Pearson, Carl A. B. Pearson, Rees, Eleanor, Nightingale, Emily, Procter, Simon, Knight, Gwen

Age-structured SEIR model for COVID-19 outbreak in Wuhan, China. (2020) Prem, Kiesha, Liu, Yang, Russell, Timothy W, Kucharski, Adam J, Eggo, Rosalind M, Davies, Nicholas G, Jit, Mark, Klepac, Petra, Flasche, Stefan, Clifford, Samuel, Pearson, Carl A B, Munday, James D, Abbott, Sam, Gibbs, Hamish, Rosello, Alicia, Quilty, Billy J, Jombart, Thibaut, Sun, Fiona, Diamond, Charlie, Gimma, Amy, Van zandvoort, Kevin, Funk, Sebastian, Jarvis, Christopher I, Edmunds, W John, Bosse, Nikos I, Hellewell, Joel

Inferring COVID-19 cases from deaths of confirmed cases. (2020) Jombart, Thibaut, Abbott, Sam, Gimma, Amy, Zandvoort, Kevin, Clifford, Samuel, Jarvis, Christopher, Russell, Timothy, Funk, Sebastian, Gibbs, Hamish, Eggo, Rosalind M., Kucharski, Adam J., CMMID COVID-19 Working Group, Edmunds, W. John

Feasibility of controlling COVID-19 outbreaks by isolation of cases and contacts. (2020) Hellewell, Joel, Abbott, Sam, Gimma, Amy, Bosse, Nikos, Jarvis, Christopher, Russell, Timothy, Munday, James, Kucharski, Adam, Edmunds, W John, Funk, Sebastian, Eggo, Rosalind, Sun, Fiona, Flasche, Stefan, Quilty, Billy, Davies, Nicholas, Liu, Yang, Clifford, Samuel, Klepac, Petra, Jit, Mark, Diamond, Charlie, Gibbs, Hamish, Van Zandvoort, Kevin

geosocial-outbreaker: Integrating geographical and social contact data to reconstruct transmission chains. (2020) Robert, Alexis

Causal Sim code. (2020) Keogh, Ruth, Seaman, Shaun R., Gran, Jon Michael, Vansteelandt, Stijn

pegas: Population and Evolutionary Genetics Analysis System. (2020) Paradis, Emmanuel, Kamvar, Zhian N., Jombart, Thibaut, Brian, Knaus, Frederic, Michaud

Probability of a large 2019-nCoV outbreak following introduction of cases. (2020) Kucharski, Adam J., Russell, Timothy W., Diamond, Charlie, CMMID nCoV working group, Funk, Sebastian, Eggo, Rosalind M.

epiforecasts/WuhanSeedingVsTransmission: Resubmission to Wellcome Open Research. (2020) Abbott, Sam, Funk, Sebastian, Munday, James D., Hellewell, Joel

gasparrini/2019_sera_StatMed_Rcode. (2019) Gasparrini, Antonio

Denvaxia-in-Phillippines. (2019) Flasche, Stefan

Measurement error correction methods applied to NHANES data. (2019) Keogh, Ruth, Bartlett, Jonathan

SWPERMUTE: Stata module to compute Permutation tests for Stepped-Wedge Cluster-Randomised Trials. (2019) Thompson, Jennifer

Real-time analysis of the diphtheria outbreak in forcibly displaced Myanmar nationals in Bangladesh. (2019) Finger, Flavio, Funk, Sebastian, White, Kate, Siddiqui, M. Ruby, Edmunds, W. John, Kucharski, Adam J.

R Code accompanying the manuscript "Assessing the performance of real-time epidemic forecasts: A case study of Ebola in the Western Area region of Sierra Leone, 2014-15". (2019) Funk, Sebastian

Mathematical model projections for: "Application of provincial data in mathematical modelling to inform sub-national tuberculosis program decision-making in South Africa". (2018) Sumner, Tom folder_zip

MOESM1 of An inexpensive open source 3D-printed membrane feeder for human malaria transmission studies. (2018) Witmer, Kathrin, Sherrard-Smith, Ellie, Straschil, Ursula, Tunnicliff, Mark, Baum, Jake, Delves, Michael

MOESM2 of An inexpensive open source 3D-printed membrane feeder for human malaria transmission studies. (2018) Witmer, Kathrin, Sherrard-Smith, Ellie, Straschil, Ursula, Tunnicliff, Mark, Baum, Jake, Delves, Michael

MI-TVE. (2018) Keogh, Ruth

Computer code of the coinfection model. (2018) Eggo, Rosalind M. description

Cost-Effectiveness of Take-Home Naloxone for the Prevention of Overdose Fatalities among Heroin Users in the United Kingdom: Supplemental Materials. (2018) Langham, Sue, Wright, Antony, Kenworthy, James, Grieve, Richard, Dunlop, William C.N.

R code: why sensitive bacteria are resistant to hospital infection control. (2017) van Kleef, Esther, Luangasanatip, Nantasit, Bonten, Marc JM, Cooper, Ben S

R files for: Mathematical Modeling of Programmatic Requirements for Yaws Eradication. (2017) Marks, Michael, Mitja, Oriol, Fitzpatrick, Christopher, Asiedu, Kingsley, Solomon, Anthony W., Mabey, David, Funk, Sebastian description

Tractable Bayesian variable selection: beyond normality. (2017) Rossell, David, Rubio, Francisco J.

Additional file 3: of Investigating the pertussis resurgence in England and Wales, and options for future control. (2017) Choi, Yoon Hong, Campbell, Helen, Amirthalingam, Gayatri, Van Hoek, Albert Jan, Miller, Elizabeth folder_zip

migariane/meltmle: Ensemble Learning Targeted Maximum Likelihood Estimation for Stata users. (2017) Luque, Miguel Angel

Elimination of visceral leishmaniasis in the Indian subcontinent: a comparison of predictions from three transmission models. (2017) Le Rutte, Epke A., Chapman, Lloyd A.C., Coffeng, Luc E., Jervis, Sarah, Hasker, Epco C., Dwivedi, Shweta, Karthick, Morchan, Das, Aritra, Mahapatra, Tanmay, Chaudhuri, Indrajit, Boelaert, Marleen C., Medley, Graham F., Srikantiah, Sridhar, Hollingsworth, T. Deirdre, de Vlas, Sake J.

Optimal Whitening and Decorrelation. (2017) Kessy, Agnan, Lewin, Alex, Strimmer, Korbinian

R Code for: "Modelling lagged associations in environmental time series data: a simulation study". (2017) Gasparrini, Antonio

Poisson Regression Dataset for "Learning Clinical Epidemiology with R" tutorial. (2017) Marks, Michael, Roberts, Chrissy description

S1 Dataset for "Transmission Dynamics of Zika Virus in Island Populations: A Modelling Analysis of the 2013–14 French Polynesia Outbreak". (2016) Kucharski, Adam J., Funk, Sebastian, Eggo, Rosalind M., Mallet, Henri-Pierre, Edmunds, W. John, Nilles, Eric J. description

Multiple imputation methods for bivariate outcomes in cluster randomised trials: Supporting Information. (2016) Diaz-ordaz, Karla, Kenward, Mike, Gomes, Manuel, Grieve, Richard description

Cost-effectiveness of Ward Closure to Control Outbreaks of Norovirus Infection in UK National Health Service Hospitals: Epidemic simulation model. (2016) Sadique, Zia, Lopman, Ben, Cooper, Ben S, Edmunds, John

Water Supply Interruptions and Suspected Cholera Incidence: A Time-Series Regression in the Democratic Republic of the Congo. S1 Table. (2015) Jeandron, Aurelie, Saidi, Jaime Mufitini, Kapama, Alois, Burhole, Manu, Birembano, Freddy, Vandevelde, Thierry, Gasparrini, Antonio, Armstrong, Ben, Cairncross, Sandy, Ensink, Jeroen description

Characterizing the Transmission Potential of Zoonotic Infections from Minor Outbreaks: Simulation and Inference code. (2015) Kucharski, Adam, Edmunds, John description

Cost-Effectiveness of HIV Drug Resistance Testing to Inform Switching to Second Line Antiretroviral Therapy in Low Income Settings: Supporting material. (2014) Phillips, Andrew, Cambiano, Valentina, Nakagawa, Fumiyo, Magubu, Travor, Miners, Alec, Ford, Debbie, Pillay, Deenan, De Luca, Andrea, Lundgren, Jens, Revill, Paul

Source code for analysis of the zoonotic niche of Ebolavirus. (2014) Pigott, David M, Golding, Nick, Mylne, Adrian, Huang, Zhi, Henry, Andrew J, Weiss, Daniel J, Brady, Oliver J., Kraemer, Moritz UG, Smith, David L, Moyes, Catherine L, Bhatt, Samir, Gething, Peter W, Horby, Peter W, Bogoch, Isaac I, Brownstein, John S, Mekaru, Sumiko R, Tatem, Andrew J, Khan, Kamran, Hay, Simon I

Combining insecticide treated bed nets and indoor residual spraying for malaria vector control in Africa. (2012) Okumu, Fredros description

Cardiovascular Risk Score Calculator. (2006) Pocock, Stuart, Bennett, Mike, Mccormack, Valerie, Gueyffier, François, Boutitie, Florent, Fagard, Robert H., Boissel, Jean-Pierre