Items where Data Creator is Jombart, Thibaut"
Number of items: 22.
Dataset
  • cleanepi: Clean and Standardize Epidemiological Data. (2024) Mané, Karim, Jombart, Thibaut, Bah, Bubacarr, Ahadzie, Bankolé, Mohammed, Nuredin, Degoot, Abdoelnaser M., Gruson, Hugo, Gupte, Pratik R., Azam, James M., Lambert, Joshua W., Hartgerink, Chris
  • finalsize: Calculate the Final Size of an Epidemic. (2024) Gupte, Pratik, Van Leeuwen, Edwin, Kucharski, Adam, Eggo, Rosalind M., Gruson, Hugo, Jombart, Thibaut, Valle Campos, Andree, Lambert, Joshua W.
  • epiverse-trace/blueprints: 0.0.2. (2022) Jombart, Thibaut, actions-user, Gruson, Hugo, Pavlich-Mariscal, Jaime
  • epiverse-trace/linelist. (2022) Jombart, Thibaut
  • jarvisc1/2020-reporting. (2021) Jarvis, Christopher I., Jombart, Thibaut
  • Analysis of changes in worldwide routine immunisation coverage in 2020. (2021) Evans, Bethany, Jombart, Thibaut
  • o2geosocial: Reconstruction of Transmission Chains from Surveillance Data. (2021) Robert, Alexis, Funk, Sebastian, Kucharski, Adam J., Jombart, Thibaut
  • Additional file 2 of COVID-19 length of hospital stay: a systematic review and data synthesis. (2020) Rees, Eleanor M., Nightingale, Emily S., Jafari, Yalda, Waterlow, Naomi R., Clifford, Samuel, B. Pearson, Carl A., CMMID Working Group, Jombart, Thibaut, Procter, Simon R., Knight, Gwenan M.
  • projections: Project Future Case Incidence. (2020) Jombart, Thibaut, Nouvellet, Pierre, Bhatia, Sangeeta, Kamvar, Zhian N., Taylor, Tim, Ghozzi, Stephane
  • trendbreaker 0.1.0: Detect Changes in Temporal Trends. (2020) Jombart, Thibaut, Schumacher, Dirk
  • adegenet: Exploratory Analysis of Genetic and Genomic Data. (2020) Jombart, Thibaut, Kamvar, Zhian N., Collins, Caitlin, Luštrik, Roman, Beugin, Marie-Pauline, Knaus, Brian J, Solymos, Peter, Mikryukov, Vladimir, Schliep, Klaus, Maié, Tiago, Morkovsky, Libor, Ahmed, Ismail, Cori, Anne, Calboli, Federico, Ewing, RJ, Michaud, Frédéric, DeCamp, Rebecca, Courtiol, Alexandre
  • thibautjombart/covid19_bed_occupancy: Second major release. (2020) Jombart, Thibaut, Clifford, Samuel, Pearson, Carl A. B. Pearson, Rees, Eleanor, Nightingale, Emily, Procter, Simon, Knight, Gwen
  • Inferring COVID-19 cases from recent death. (2020) Jombart, Thibaut, Abbott, Sam, Gimma, Amy, Van zandvoort, Kevin, Jarvis, Christopher
  • Age-structured SEIR model for COVID-19 outbreak in Wuhan, China. (2020) Prem, Kiesha, Liu, Yang, Russell, Timothy W, Kucharski, Adam J, Eggo, Rosalind M, Davies, Nicholas G, Jit, Mark, Klepac, Petra, Flasche, Stefan, Clifford, Samuel, Pearson, Carl A B, Munday, James D, Abbott, Sam, Gibbs, Hamish, Rosello, Alicia, Quilty, Billy J, Jombart, Thibaut, Sun, Fiona, Diamond, Charlie, Gimma, Amy, Van zandvoort, Kevin, Funk, Sebastian, Jarvis, Christopher I, Edmunds, W John, Bosse, Nikos I, Hellewell, Joel
  • Inferring COVID-19 cases from deaths of confirmed cases. (2020) Jombart, Thibaut, Abbott, Sam, Gimma, Amy, Zandvoort, Kevin, Clifford, Samuel, Jarvis, Christopher, Russell, Timothy, Funk, Sebastian, Gibbs, Hamish, Eggo, Rosalind M., Kucharski, Adam J., CMMID COVID-19 Working Group, Edmunds, W. John
  • pegas: Population and Evolutionary Genetics Analysis System. (2020) Paradis, Emmanuel, Kamvar, Zhian N., Jombart, Thibaut, Brian, Knaus, Frederic, Michaud
  • jstockwin/EpiEstimApp: v1.0.0. (2019) Stockwin, Jake, Thompson, Robin, Cori, Anne, Jombart, Thibaut, Kamvar, Zhian N., FitzJohn, Rich
  • mrc-ide/EpiEstim: 2.2-3. (2019) Cori, Anne, Kamvar, Zhian N., Stockwin, Jake, Jombart, Thibaut, Thompson, Robin, Dahlqwist, Elisabeth
  • outbreaker2: Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data. (2018) Jombart, Thibaut, Campbell, Finlay, Fitzjohn, Richard
  • treespace: exploration of landscapes of phylogenetic trees. (2018) Jombart, Thibaut, Kendall, Michelle, Almagro-Garcia, Jacob, Colijn, Caroline
  • The Ecological Dynamics of Fecal Contamination and Salmonella Typhi and Salmonella Paratyphi A in Municipal Kathmandu Drinking Water. S2 Dataset. (2016) Karkey, Abhilasha, Jombart, Thibaut, Walker, Alan W., Thompson, Corinne N., Torres, Andres, Dongol, Sabina, Tran Vu Thieu, Nga, Pham Thanh, Duy, Tran Thi Ngoc, Dung, Voong Vinh, Phat, Singer, Andrew C., Parkhill, Julian, Thwaites, Guy, Basnyat, Buddha, Ferguson, Neil, Baker, Stephen
  • Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data. (2014) Jombart, Thibaut, Cori, Anne, Didelot, Xavier, Cauchemez, Simon, Fraser, Christophe, Ferguson, Neil