Items where Data Creator is Jombart, Thibaut"
Number of items: 22.
Dataset
cleanepi: Clean and Standardize Epidemiological Data. (2024)
Mané, Karim, Jombart, Thibaut, Bah, Bubacarr, Ahadzie, Bankolé, Mohammed, Nuredin, Degoot, Abdoelnaser M., Gruson, Hugo, Gupte, Pratik R., Azam, James M., Lambert, Joshua W., Hartgerink, Chris
finalsize: Calculate the Final Size of an Epidemic. (2024)
Gupte, Pratik, Van Leeuwen, Edwin, Kucharski, Adam, Eggo, Rosalind M., Gruson, Hugo, Jombart, Thibaut, Valle Campos, Andree, Lambert, Joshua W.
epiverse-trace/blueprints: 0.0.2. (2022)
Jombart, Thibaut, actions-user, Gruson, Hugo, Pavlich-Mariscal, Jaime
epiverse-trace/linelist. (2022)
Jombart, Thibaut
jarvisc1/2020-reporting. (2021)
Jarvis, Christopher I., Jombart, Thibaut
Analysis of changes in worldwide routine immunisation coverage in 2020. (2021)
Evans, Bethany, Jombart, Thibaut
o2geosocial: Reconstruction of Transmission Chains from Surveillance Data. (2021)
Robert, Alexis, Funk, Sebastian, Kucharski, Adam J., Jombart, Thibaut
Additional file 2 of COVID-19 length of hospital stay: a systematic review and data synthesis. (2020)
Rees, Eleanor M., Nightingale, Emily S., Jafari, Yalda, Waterlow, Naomi R., Clifford, Samuel, B. Pearson, Carl A., CMMID Working Group, Jombart, Thibaut, Procter, Simon R., Knight, Gwenan M.
projections: Project Future Case Incidence. (2020)
Jombart, Thibaut, Nouvellet, Pierre, Bhatia, Sangeeta, Kamvar, Zhian N., Taylor, Tim, Ghozzi, Stephane
trendbreaker 0.1.0: Detect Changes in Temporal Trends. (2020)
Jombart, Thibaut, Schumacher, Dirk
adegenet: Exploratory Analysis of Genetic and Genomic Data. (2020)
Jombart, Thibaut, Kamvar, Zhian N., Collins, Caitlin, Luštrik, Roman, Beugin, Marie-Pauline, Knaus, Brian J, Solymos, Peter, Mikryukov, Vladimir, Schliep, Klaus, Maié, Tiago, Morkovsky, Libor, Ahmed, Ismail, Cori, Anne, Calboli, Federico, Ewing, RJ, Michaud, Frédéric, DeCamp, Rebecca, Courtiol, Alexandre
thibautjombart/covid19_bed_occupancy: Second major release. (2020)
Jombart, Thibaut, Clifford, Samuel, Pearson, Carl A. B. Pearson, Rees, Eleanor, Nightingale, Emily, Procter, Simon, Knight, Gwen
Inferring COVID-19 cases from recent death. (2020)
Jombart, Thibaut, Abbott, Sam, Gimma, Amy, Van zandvoort, Kevin, Jarvis, Christopher
Age-structured SEIR model for COVID-19 outbreak in Wuhan, China. (2020)
Prem, Kiesha, Liu, Yang, Russell, Timothy W, Kucharski, Adam J, Eggo, Rosalind M, Davies, Nicholas G, Jit, Mark, Klepac, Petra, Flasche, Stefan, Clifford, Samuel, Pearson, Carl A B, Munday, James D, Abbott, Sam, Gibbs, Hamish, Rosello, Alicia, Quilty, Billy J, Jombart, Thibaut, Sun, Fiona, Diamond, Charlie, Gimma, Amy, Van zandvoort, Kevin, Funk, Sebastian, Jarvis, Christopher I, Edmunds, W John, Bosse, Nikos I, Hellewell, Joel
Inferring COVID-19 cases from deaths of confirmed cases. (2020)
Jombart, Thibaut, Abbott, Sam, Gimma, Amy, Zandvoort, Kevin, Clifford, Samuel, Jarvis, Christopher, Russell, Timothy, Funk, Sebastian, Gibbs, Hamish, Eggo, Rosalind M., Kucharski, Adam J., CMMID COVID-19 Working Group, Edmunds, W. John
pegas: Population and Evolutionary Genetics Analysis System. (2020)
Paradis, Emmanuel, Kamvar, Zhian N., Jombart, Thibaut, Brian, Knaus, Frederic, Michaud
jstockwin/EpiEstimApp: v1.0.0. (2019)
Stockwin, Jake, Thompson, Robin, Cori, Anne, Jombart, Thibaut, Kamvar, Zhian N., FitzJohn, Rich
mrc-ide/EpiEstim: 2.2-3. (2019)
Cori, Anne, Kamvar, Zhian N., Stockwin, Jake, Jombart, Thibaut, Thompson, Robin, Dahlqwist, Elisabeth
outbreaker2: Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data. (2018)
Jombart, Thibaut, Campbell, Finlay, Fitzjohn, Richard
treespace: exploration of landscapes of phylogenetic trees. (2018)
Jombart, Thibaut, Kendall, Michelle, Almagro-Garcia, Jacob, Colijn, Caroline
The Ecological Dynamics of Fecal Contamination and Salmonella Typhi and Salmonella Paratyphi A in Municipal Kathmandu Drinking Water. S2 Dataset. (2016)
Karkey, Abhilasha, Jombart, Thibaut, Walker, Alan W., Thompson, Corinne N., Torres, Andres, Dongol, Sabina, Tran Vu Thieu, Nga, Pham Thanh, Duy, Tran Thi Ngoc, Dung, Voong Vinh, Phat, Singer, Andrew C., Parkhill, Julian, Thwaites, Guy, Basnyat, Buddha, Ferguson, Neil, Baker, Stephen
Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data. (2014)
Jombart, Thibaut, Cori, Anne, Didelot, Xavier, Cauchemez, Simon, Fraser, Christophe, Ferguson, Neil