Items where Data Creator is Jombart, Thibaut"
Number of items: 22.
Dataset
  • cleanepi: Clean and Standardize Epidemiological Data. (2024) Mané, Karim; Jombart, Thibaut; Bah, Bubacarr; Ahadzie, Bankolé; Mohammed, Nuredin; Degoot, Abdoelnaser M.; Gruson, Hugo; Gupte, Pratik R.; Azam, James M.; Lambert, Joshua W.; Hartgerink, Chris
  • finalsize: Calculate the Final Size of an Epidemic. (2024) Gupte, Pratik; Van Leeuwen, Edwin; Kucharski, Adam; Eggo, Rosalind M.; Gruson, Hugo; Jombart, Thibaut; Valle Campos, Andree; Lambert, Joshua W.
  • epiverse-trace/blueprints: 0.0.2. (2022) Jombart, Thibaut; actions-user; Gruson, Hugo; Pavlich-Mariscal, Jaime
  • epiverse-trace/linelist. (2022) Jombart, Thibaut
  • jarvisc1/2020-reporting. (2021) Jarvis, Christopher I.; Jombart, Thibaut
  • Analysis of changes in worldwide routine immunisation coverage in 2020. (2021) Evans, Bethany; Jombart, Thibaut
  • o2geosocial: Reconstruction of Transmission Chains from Surveillance Data. (2021) Robert, Alexis; Funk, Sebastian; Kucharski, Adam J.; Jombart, Thibaut
  • Additional file 2 of COVID-19 length of hospital stay: a systematic review and data synthesis. (2020) Rees, Eleanor M.; Nightingale, Emily S.; Jafari, Yalda; Waterlow, Naomi R.; Clifford, Samuel; B. Pearson, Carl A.; CMMID Working Group; Jombart, Thibaut; Procter, Simon R.; Knight, Gwenan M.
  • projections: Project Future Case Incidence. (2020) Jombart, Thibaut; Nouvellet, Pierre; Bhatia, Sangeeta; Kamvar, Zhian N.; Taylor, Tim; Ghozzi, Stephane
  • trendbreaker 0.1.0: Detect Changes in Temporal Trends. (2020) Jombart, Thibaut; Schumacher, Dirk
  • adegenet: Exploratory Analysis of Genetic and Genomic Data. (2020) Jombart, Thibaut; Kamvar, Zhian N.; Collins, Caitlin; Luštrik, Roman; Beugin, Marie-Pauline; Knaus, Brian J; Solymos, Peter; Mikryukov, Vladimir; Schliep, Klaus; Maié, Tiago; Morkovsky, Libor; Ahmed, Ismail; Cori, Anne; Calboli, Federico; Ewing, RJ; Michaud, Frédéric; DeCamp, Rebecca; Courtiol, Alexandre
  • thibautjombart/covid19_bed_occupancy: Second major release. (2020) Jombart, Thibaut; Clifford, Samuel; Pearson, Carl A. B. Pearson; Rees, Eleanor; Nightingale, Emily; Procter, Simon; Knight, Gwen
  • Inferring COVID-19 cases from recent death. (2020) Jombart, Thibaut; Abbott, Sam; Gimma, Amy; Van zandvoort, Kevin; Jarvis, Christopher
  • Age-structured SEIR model for COVID-19 outbreak in Wuhan, China. (2020) Prem, Kiesha; Liu, Yang; Russell, Timothy W; Kucharski, Adam J; Eggo, Rosalind M; Davies, Nicholas G; Jit, Mark; Klepac, Petra; Flasche, Stefan; Clifford, Samuel; Pearson, Carl A B; Munday, James D; Abbott, Sam; Gibbs, Hamish; Rosello, Alicia; Quilty, Billy J; Jombart, Thibaut; Sun, Fiona; Diamond, Charlie; Gimma, Amy; Van zandvoort, Kevin; Funk, Sebastian; Jarvis, Christopher I; Edmunds, W John; Bosse, Nikos I; Hellewell, Joel
  • Inferring COVID-19 cases from deaths of confirmed cases. (2020) Jombart, Thibaut; Abbott, Sam; Gimma, Amy; Zandvoort, Kevin; Clifford, Samuel; Jarvis, Christopher; Russell, Timothy; Funk, Sebastian; Gibbs, Hamish; Eggo, Rosalind M.; Kucharski, Adam J.; CMMID COVID-19 Working Group; Edmunds, W. John
  • pegas: Population and Evolutionary Genetics Analysis System. (2020) Paradis, Emmanuel; Kamvar, Zhian N.; Jombart, Thibaut; Brian, Knaus; Frederic, Michaud
  • jstockwin/EpiEstimApp: v1.0.0. (2019) Stockwin, Jake; Thompson, Robin; Cori, Anne; Jombart, Thibaut; Kamvar, Zhian N.; FitzJohn, Rich
  • mrc-ide/EpiEstim: 2.2-3. (2019) Cori, Anne; Kamvar, Zhian N.; Stockwin, Jake; Jombart, Thibaut; Thompson, Robin; Dahlqwist, Elisabeth
  • outbreaker2: Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data. (2018) Jombart, Thibaut; Campbell, Finlay; Fitzjohn, Richard
  • treespace: exploration of landscapes of phylogenetic trees. (2018) Jombart, Thibaut; Kendall, Michelle; Almagro-Garcia, Jacob; Colijn, Caroline
  • The Ecological Dynamics of Fecal Contamination and Salmonella Typhi and Salmonella Paratyphi A in Municipal Kathmandu Drinking Water. S2 Dataset. (2016) Karkey, Abhilasha; Jombart, Thibaut; Walker, Alan W.; Thompson, Corinne N.; Torres, Andres; Dongol, Sabina; Tran Vu Thieu, Nga; Pham Thanh, Duy; Tran Thi Ngoc, Dung; Voong Vinh, Phat; Singer, Andrew C.; Parkhill, Julian; Thwaites, Guy; Basnyat, Buddha; Ferguson, Neil; Baker, Stephen
  • Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data. (2014) Jombart, Thibaut; Cori, Anne; Didelot, Xavier; Cauchemez, Simon; Fraser, Christophe; Ferguson, Neil