Jombart, T, Campbell, F and Fitzjohn, R. 2018. outbreaker2: Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data. [Online]. The Comprehensive R Archive Network. Available from: https://CRAN.R-project.org/package=outbreaker2
Jombart, T, Campbell, F and Fitzjohn, R. outbreaker2: Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data [Internet]. The Comprehensive R Archive Network; 2018. Available from: https://CRAN.R-project.org/package=outbreaker2
Jombart, T, Campbell, F and Fitzjohn, R (2018). outbreaker2: Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data. [Data Collection]. The Comprehensive R Archive Network. https://CRAN.R-project.org/package=outbreaker2
Description
outbreaker2 is a Bayesian framework for integrating epidemiological and genetic data to reconstruct transmission trees of densely sampled outbreaks. It re-implements, generalises and replaces the model of outbreaker, and uses a modular approach which enables fine customisation of priors, likelihoods and parameter movements.
| Data capture method | Other |
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| Date (Date published in a 3rd party system) | 30 November 2018 |
| Language(s) of written materials | English |
| Data Creators | Jombart, T, Campbell, F and Fitzjohn, R |
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| LSHTM Faculty/Department | Faculty of Epidemiology and Population Health > Dept of Infectious Disease Epidemiology |
| Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom |
| Funders |
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| Date Deposited | 18 Dec 2018 10:55 |
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| Last Modified | 08 Jul 2021 12:52 |
| Publisher | The Comprehensive R Archive Network |
