18 January 2016

Karkey, A, Jombart, T, Walker, AW, Thompson, CN, Torres, A, Dongol, S, Tran Vu Thieu, N, Pham Thanh, D, Tran Thi Ngoc, D, Voong Vinh, P, Singer, AC, Parkhill, J, Thwaites, G, Basnyat, B, Ferguson, N and Baker, S (2016). The Ecological Dynamics of Fecal Contamination and Salmonella Typhi and Salmonella Paratyphi A in Municipal Kathmandu Drinking Water. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0004346

October 2016

Falconer, J (2016). Search strategies for "Consolidating emerging evidence surrounding HIV self-testing (HIVST) & HIV self-sampling (HIVSS)". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001022.

25 April 2018

Llewellyn, CD, Abraham, C, Pollard, A, Jones, CI, Bremner, S, Miners, A and Smith, H (2018). PEPSE for SURE. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.6182381.v1

14 May 2018

Jombart, T, Kendall, M, Almagro-Garcia, J and Colijn, C (2018). treespace: exploration of landscapes of phylogenetic trees. [Data Collection]. Github. https://thibautjombart.github.io/treespace/

30 November 2018

Jombart, T, Campbell, F and Fitzjohn, R (2018). outbreaker2: Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data. [Data Collection]. The Comprehensive R Archive Network. https://CRAN.R-project.org/package=outbreaker2

21 February 2020

Peppa, M, Thomas, S, Kempley, S and Mangtani, P (2020). Clinical codelist - Congenital malformation codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001623.

Thomas, S, Peppa, M and Walker, J (2020). Clinical codelist - Influenza vaccination codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001626.

Peppa, M, Thomas, S, Kempley, S and Mangtani, P (2020). HES diagnosis codelist - Congenital malformation codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001624.

Peppa, M, Thomas, S, Kempley, S and Mangtani, P (2020). HES procedures codelist - Congenital malformation codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001625.

Thomas, S, Peppa, M and Walker, J (2020). Immunisation codelist - Influenza vaccination codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001627.

Thomas, S, Peppa, M and Walker, J (2020). Therapy codelist - Influenza vaccination codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001628.

27 February 2020

Wing, K and Quint, JK (2020). Clinical codelist - Alcohol or substance abuse (exclusion criteria). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001645.

Quint, JK (2020). Clinical codelist - Asthma codes (exclusion criteria). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001642.

Quint, JK (2020). Clinical codelist - Breathlessness (used to help detect COPD exacerbations). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001651.

Wing, K and Quint, JK (2020). Clinical codelist - Conditions likely to interfere with ability of person to take part in an RCT (exclusion criteria). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001647.

Quint, J (2020). Clinical codelist - Cough (used to help detect COPD exacerbations). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001649.

Quint, JK (2020). Clinical codelist - LRTI (used to help detect COPD exacerbations). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001652.

Quint, JK and Mcdonald, H (2020). Clinical codelist - Pneumonia detection. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001654.

Quint, JK (2020). Clinical codelist - Sputum (used to help detect COPD exacerbations). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001650.

Quint, J (2020). Clinical codelist - acute COPD exacerbation (used to help detect COPD exacerbations). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001653.

Wing, K and Quint, JK (2020). Clinical codelist - lung/respiratory conditions other than COPD (exclusion criteria). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001643.

Wing, K and Quint, JK (2020). Clinical codelist- Oxygen therapy (exclusion criteria). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001646.

Quint, JK and Wing, K (2020). Therapy codelist - Antibiotic therapy for respiratory infections (used to help detect COPD exacerbations). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001648.

Quint, JK (2020). Therapy codelist - Long-acting beta agonists. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001632.

Quint, JK (2020). Therapy codelist - Oral Corticosteroid codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001641.

Wing, K and Quint, JK (2020). Therapy codelist - Oxygen therapy (exclusion criteria). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001644.

Quint, JK (2020). Therapy codelist - inhaled Corticosteroid codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001640.

Quint, JK (2020). Therapy codelist - long-acting muscarinic antagonist codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001639.

18 March 2020

Prem, K, Liu, Y, Russell, TW, Kucharski, AJ, Eggo, RM, Davies, N, Jit, M, Klepac, P, Flasche, S, Clifford, S, Pearson, CAB, Munday, JD, Abbott, S, Gibbs, H, Rosello, A, Quilty, BJ, Jombart, T, Sun, F, Diamond, C, Gimma, A, Van zandvoort, K, Funk, S, Jarvis, CI, Edmunds, WJ, Bosse, NI and Hellewell, J (2020). Age-structured SEIR model for COVID-19 outbreak in Wuhan, China. [Data Collection]. Github. https://github.com/kieshaprem/covid19-agestructureSEIR-wuhan-social-distancing

26 March 2020

Russell, TW, Hellewell, J, Jarvis, CI, Van-Zandvoort, K, Abbott, S, Ratnayake, R, Flasche, S, Eggo, RM and Kucharski, AJ (2020). Estimating the infection and case fatality ratio for COVID-19 using age-adjusted data from the outbreak on the Diamond Princess cruise ship. [Data Collection]. Github. https://github.com/thimotei/cCFRDiamondPrincess

27 March 2020

Mcdonald, H, Evans, D, Clay, S, Edelstein, M and Thomas, S (2020). Immunisation risk group - Cardiac disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001661.

Mcdonald, H, Evans, D, Clay, S, Edelstein, M and Thomas, S (2020). Immunisation risk group - Diabetes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001665.

Mcdonald, H, Evans, D, Clay, S, Edelstein, M and Thomas, S (2020). Immunisation risk group - chronic kidney disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001664.

Mcdonald, H, Evans, D, Clay, S, Edelstein, M and Thomas, S (2020). Immunisation risk group - chronic respiratory disease without asthma. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001663.

Mcdonald, H, Evans, D, Clay, S, Edelstein, M and Thomas, S (2020). Immunisation risk group - liver disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001662.

21 April 2020

Thomas, S (2020). COVID-19 risk group - Neurological disease codelist. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001704.

12 May 2020

Roberts, C, Rogers, N, Waterlow, N, Brindle, H, Enria, L and Lees, S (2020). Behavioural change towards reduced intensity physical activity is disproportionately prevalent among adults with serious health issues or self-perception of high risk during the UK COVID-19 lockdown. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001753.

Cairns, M, Thera, I, Dicko, A, Ouedraogo, J, Chandramohan, D and Greenwood, B (2020). Data for AZ-SMC - a trial of seasonal malaria chemoprevention combined with azithromycin in African children. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001752.

7 July 2020

Hiemstra, TF, Smith, JC, Lim, K, Xu, D, Kulkarni, S, Bradley, JA, Paapstel, K, Schoenmakers, I, Bradley, JR, Tomlinson, L, McEniery, CM and Wilkinson, IB (2020). Effect of kidney donation on bone mineral metabolism. [Data Collection]. Plos One. https://doi.org/10.1371/journal.pone.0235082

Russell, TW, Wu, JT, Clifford, S, CMMID COVID-19 working group, Edmunds, WJ, Kucharski, AJ and Jit, M (2020). thimotei/covid_travel_restrictions. [Data Collection]. Github. https://github.com/thimotei/covid_travel_restrictions

8 July 2020

Carreira, H (2020). Clinical Codelist - Product codes for pneumococcal vaccination. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001806.

Carreira, H (2020). Clinical Codelist - Read codes for pneumococcal vaccination. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001805.

Carreira, H (2020). Clinical codelist - Immunisation codes for pneumococcal vaccination. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001807.