Data capture method
Number of items: 486.
2009
DNAPlotter: circular and linear interactive genome visualization. (2009)
Carver, Tim, Thomson, Nick, Bleasby, Alan, Berriman, Matthew, Parkhill, Julian
SnoopCGH. (2009)
Almagro-Garcia, Jacob, Clark, Taane
7 May 2009
A HaemAtlas: characterizing gene expression in differentiated human blood cells. (2009)
Watkins, Nicholas A, Gusnanto, Arief, de Bono, Bernard, De, Subhajyoti, Miranda-Saavedra, Diego, Hardie, Debbie L, Angenent, Will G. J., Attwood, Antony P, Ellis, Peter D, Erber, Wendy, Foad, Nicola S, Garner, Stephen F, Isacke, Clare M, Jolley, Jennifer, Koch, Kerstin, Macaulay, Iain C, Morley, Sarah L, Rendon, Augusto, Rice, Kate M, Taylor, Niall, Thijssen-Timmer, Daphne C, Tijssen, Marloes R, van der Schoot, C. Ellen, Wernisch, Lorenz, Winzer, Thilo, Dudbridge, Frank, Buckley, Christopher D, Langford, Cordelia F, Teichmann, Sarah, Göttgens, Berthold, Ouwehand, Willem H
17 July 2009
A Strand-Specific RNA–Seq Analysis of the Transcriptome of the Typhoid Bacillus Salmonella Typhi. (2009)
Perkins, Timothy T., Kingsley, Robert A., Fookes, Maria C., Gardner, Paul P., James, Keith D., Yu, Lu, Assefa, Samuel A., He, Miao, Croucher, Nicholas J., Pickard, Derek J., Maskell, Duncan J., Parkhill, Julian, Choudhary, Jyoti, Thomson, Nicholas R., Dougan, Gordon
2012
Droplet Digital PCR (ddPCR) data analysis scripts. (2012)
Roberts, Chrissy
folder_zip
Eyescores - Electronic Data Capture and photographic evidence collection platform for biological field studies. (2012)
Roberts, Chrissy, Mtuy, Tara, Derrick, Tamsyn, Burton, Matthew, Holland, Martin
In Silico Spoligotyping. (2012)
Coll, Francesc, Mallard, K, Preston, MD, Bentley, S, Parkhill, Julian, Mcnerney, Ruth, Martin, N, Clark, Taane
VCF Viewer (VARB). (2012)
Preston, Mark D., Manske, M, Horner, N, Assefa, S, Campino, S, Auburn, S, Zongo, I, Ouedraogo, JB, Nosten, F, Anderson, T, Clark, Taane
May 2014
PolyTB: A web-based resource designed to explore Mycobacterium tuberculosis complex (MTBC) genomic variation at a global scale. (2014)
Coll, Francesc, Preston, Mark, Guerra-Assunção, José Afonso, Hill-Cawthorn, Grant, Harris, David, Perdigão, João, Viveiros, Miguel, Portugal, Isabel, Drobniewski, Francis, Gagneux, Sebastien, Glynn, Judith R., Pain, Arnab, Parkhill, Julian, McNerney, Ruth, Martin, Nigel, Clark, Taane
2015
IDEAS project - Private sector health data sharing study in West Bengal. (2015)
Gautham, Meenakshi, Manish, Subharwal, Sanjay, Gupta, Spicer, Neil
IDEAS project - Qualitative data for the Data Informed Platform for Health formative study in West Bengal. (2015)
Bhattacharyya, Sanghita
TB Profiler. (2015)
Coll, Francesc, Mcnerney, Ruth, Preston, Mark D., Guerra-assunção, José Afonso, Warry, Andrew, Hill-Cawthorne, Grant, Mallard, Kim, Nair, Mridul, Miranda, Anabela, Alves, Adriana, Perdigão, João, Viveiros, Miguel, Portugal, Isabel, Hasan, Zahra, Hasan, Rumina, Glynn, Judith, Martin, Nigel, Pain, Arnab, Clark, Taane
folder_zip
18 March 2015
Data from: Novel R pipeline for analyzing Biolog phenotypic microarray data. (2015)
Vehkala, Minna, Shubin, Mikhail, Connor, Thomas R, Thomson, Nick, Corander, Jukka
folder_zip
Genome-wide analysis of selection on the malaria parasite Plasmodium falciparum in West African populations of differing infection endemicity: Supplementary data. (2015)
Mobegi, Victor, Duffy, Craig, Amambua-Ngwa, Alfred, Loua, Kovana M, Laman, Eugene, Nwakanma, Davis C, MacInnis, Bronwyn, Aspeling-jones, Harvey, Murray, Lee, Clark, Taane, Kwiatkowski, Dominic P, Conway, David
grid_on
26 March 2015
PhyloTrack. (2015)
Benavente, Ernest, Coll, Francesc, Furnham, Nick, Mcnerney, Ruth, Glynn, Judith, Campino, Susana, Pain, Arnab, Mohareb, Fady R, Clark, Taane
31 March 2015
Data from: Ecological host fitting of Trypanosoma cruzi TcI in Bolivia: mosaic population structure, hybridization and a role for humans in Andean parasite dispersal. (2015)
Messenger, Louisa, Garcia, Lineth, Vanhove, Mathieu, Huaranca, Carlos, Bustamante, Marinely, Torrico, Marycruz, Torrico, Faustino, Miles, Michael, Llewellyn, Martin
23 June 2015
Data from: Transmission of multidrug-resistant and drug-susceptible tuberculosis within households: a prospective cohort study. (2015)
Grandjean, Louis, Gilman, Robert H., Martin, Laura, Soto, Esther, Castro, Beatriz, Lopez, Sonia, Coronel, Jorge, Castillo, Edith, Alarcon, Valentina, Lopez, Virginia, San Miguel, Angela, Quispe, Neyda, Asencios, Luis, Dye, Christopher, Moore, David
28 July 2015
Effect of paying for performance on utilisation, quality, and user costs of health services in Tanzania: a controlled before and after study. (2015)
Binyaruka, Peter, Patouillard, Edith, Powell-jackson, Timothy, Greco, Giulia, Maestad, Ottar, Borghi, Josephine
description
22 October 2015
Additional file 2: of Quantification of the natural history of visceral leishmaniasis and consequences for control. (2015)
Chapman, Lloyd A C, Dyson, Louise, Courtenay, Orin, Chowdhury, Rajib, Bern, Caryn, Medley, Graham, Hollingsworth, T. Deirdre
description
9 March 2016
Validation of the Recording of Acute Exacerbations of COPD in UK Primary Care Electronic Healthcare Records. (2016)
Chotirmall, Sanjay Haresh, Rothnie, Kieran, Müllerová, Hana, Hurst, John R., Smeeth, Liam, Davis, Kourtney, Thomas, Sara L, Quint, Jennifer
description
21 April 2016
Children with Moderate Acute Malnutrition with No Access to Supplementary Feeding Programmes Experience High Rates of Deterioration and No Improvement: Results from a Prospective Cohort Study in Rural Ethiopia. (2016)
James, Philip, Sadler, Kate, Wondafrash, Mekitie, Argaw, Alemayehu, Luo, Hanqi, Geleta, Benti, Kedir, Kiya, Getnet, Yilak, Belachew, Tefera, Bahwere, Paluku
6 May 2016
Autopsy Prevalence of Tuberculosis and Other Potentially Treatable Infections among Adults with Advanced HIV Enrolled in Out-Patient Care in South Africa: Lesedi Kamoso study data. (2016)
Karat, Aaron S., Omar, Tanvier, von Gottberg, Anne, Tlali, Mpho, Chihota, Violet N., Churchyard, Gavin J., Fielding, Katherine L., Johnson, Suzanne, Martinson, Neil A., McCarthy, Kerrigan, Wolter, Nicole, Wong, Emily B., Charalambous, Salome, Grant, Alison D.
description
15 September 2016
Treatment Contact Coverage for Probable Depressive and Probable Alcohol Use Disorders in Four Low- and Middle-Income Country Districts: The PRIME Cross-Sectional Community Surveys. Stata do file for baseline analysis. (2016)
Rathod, Sujit D., De Silva, Mary J., Ssebunnya, Joshua, Breuer, Erica, Murhar, Vaibhav, Luitel, Nagendra P., Medhin, Girmay, Kigozi, Fred, Shidhaye, Rahul, Fekadu, Abebaw, Jordans, Mark, Patel, Vikram, Tomlinson, Mark, Lund, Crick
description
22 December 2016
PRINCESS: Privacy-protecting Rare disease International Network Collaboration via Encryption through Software guard extensionS. (2016)
Chen, Feng, Wang, Shuang, Jiang, Xiaoqian, Ding, Sijie, Lu, Yao, Kim, Jihoon, Sahinalp, S. Cenk, Shimizu, Chisato, Burns, Jane C., Wright, Victoria J., Png, Eileen, Hibberd, Martin L., Lloyd, David D., Yang, Hai, Telenti, Amalio, Bloss, Cinnamon S., Fox, Dov, Lauter, Kristin, Ohno-Machado, Lucila
15 January 2017
R and STATA code for: "Conditional Poisson models: a flexible alternative to conditional logistic case cross-over analysis". (2017)
Armstrong, Ben G., Gasparrini, Antonio, Tobias, Aurelio
R code and data for: "Associations of Inter- and Intraday Temperature Change With Mortality". (2017)
Vicedo-cabrera, Ana M., Forsberg, Bertil, Tobias, Aurelio, Zanobetti, Antonella, Schwartz, Joel, Armstrong, Ben, Gasparrini, Antonio
R code for: "Distributed lag non-linear models". (2017)
Gasparrini, Antonio, Armstrong, Ben, Kenward, Mike G.
R code for: "Modeling exposure–lag–response associations with distributed lag non-linear models". (2017)
Gasparrini, Antonio
R code for: "The impact of heat waves on mortality". (2017)
Gasparrini, Antonio, Armstrong, Ben
R code, Stata code and data for: "Time series regression studies in environmental epidemiology". (2017)
Bhaskaran, Krishnan, Gasparrini, Antonio, Hajat, Shakoor, Smeeth, Liam, Armstrong, Ben
Tutorial code for "Distributed Lag Linear and Non-Linear Models
in R: The Package dlnm". (2017)
Gasparrini, Antonio
5 December 2017
R code and data for: "Multivariate meta-analysis for non-linear and other multi-parameter associations". (2017)
Gasparrini, Antonio, Armstrong, Ben, Kenward, Mike G.
R code and data for: "Reducing and meta-analysing estimates from distributed lag non-linear models". (2017)
Gasparrini, Antonio, Armstrong, Ben
R code and data for: "Temporal Variation in Heat–Mortality Associations: A Multicountry Study". (2017)
Gasparrini, Antonio, Guo, Yuming, Hashizume, Masahiro, Kinney, Patrick L., Petkova, Elisaveta P., Lavigne, Eric, Zanobetti, Antonella, Schwartz, Joel D., Tobias, Aurelio, Leone, Michela, Tong, Shilu, Honda, Yasushi, Kim, Ho, Armstrong, Ben G.
28 June 2018
Sensitivity analysis for missing data in cost-effectiveness analysis: Stata code. (2018)
Leurent, Baptiste, Gomes, Manuel, Faria, Rita, Morris, Stephen, Grieve, Richard, Carpenter, James R.
21 September 2018
BlantyreTBEpi. (2018)
MacPherson, Peter, Khundi, McEwen, Nliwasa, Marriott, Choko, Augustine T., Phiri, Vincent K., Webb, Emily L., Dodd, Peter J., Cohen, Ted, Harris, Rebecca, Corbett, Elizabeth L.
1 October 2018
DREAMS baseline study in young men aged 20-29 years in rural KwaZulu Natal, South Africa, 2006-2015. (2018)
Herbst, Kobus, Pillay, Deenan, Baisley, Kathy, Barnighausen, Till, Koole, Olivier
29 November 2018
EN-BIRTH Data Collection Tools. (2018)
Day, Louise Tina, Ruysen, Harriet, Gordeev, Vladimir S., Gore-langton, Georgia R., Boggs, Dorothy, Cousens, Simon, Moxon, Sarah G., Blencowe, Hannah, Baschieri, Angela, Rahman, Ahmed Ehsanur, Tahsina, Tazeen, Zaman, Sojib Bin, Hossain, Tanvir, Rahman, Qazi Sadeq-ur, Ameen, Shafiqul, Arifeen, Shams El, KC, Ashish, Shrestha, Shree Krishna, KC, Naresh P., Singh, Dela, Jha, Anjani Kumar, Jha, Bijay, Rana, Nisha, Basnet, Omkar, Joshi, Elisha, Paudel, Asmita, Shrestha, Parashu Ram, Jha, Deepak, Bastola, Ram Chandra, Ghimire, Jagat Jeevan, Paudel, Rajendra, Salim, Nahya, Shamba, Donat, Manji, Karim, Shabani, Josephine, Shirima, Kizito, Mkopi, Namala, Mrisho, Mwifadhi, Manzi, Fatuma, Jaribu, Jennie, Kija, Edward, Assenga, Evelyne, Kisenge, Rodrick, Pembe, Andrea, Hanson, Claudia, Mbaruku, Godfrey, Masanja, Honorati, Lawn, Joy E.
EN-BIRTH Data Collector Training - Handbook and Manual. (2018)
Day, Louise Tina, Ruysen, Harriet, Gordeev, Vladimir S., Gore-langton, Georgia R., Boggs, Dorothy, Cousens, Simon, Moxon, Sarah G., Blencowe, Hannah, Baschieri, Angela, Rahman, Ahmed Ehsanur, Tahsina, Tazeen, Zaman, Sojib Bin, Hossain, Tanvir, Rahman, Qazi Sadeq-ur, Ameen, Shafiqul, Arifeen, Shams El, KC, Ashish, Shrestha, Shree Krishna, KC, Naresh P., Singh, Dela, Jha, Anjani Kumar, Jha, Bijay, Rana, Nisha, Basnet, Omkar, Joshi, Elisha, Paudel, Asmita, Shrestha, Parashu Ram, Jha, Deepak, Bastola, Ram Chandra, Ghimire, Jagat Jeevan, Paudel, Rajendra, Salim, Nahya, Shamba, Donat, Manji, Karim, Shabani, Josephine, Shirima, Kizito, Mkopi, Namala, Mrisho, Mwifadhi, Manzi, Fatuma, Jaribu, Jennie, Kija, Edward, Assenga, Evelyne, Kisenge, Rodrick, Pembe, Andrea, Hanson, Claudia, Mbaruku, Godfrey, Masanja, Honorati, Lawn, Joy E.
EN-BIRTH Data Collector Training - Supporting Annexes. (2018)
Day, Louise Tina, Ruysen, Harriet, Gordeev, Vladimir S., Gore-langton, Georgia R., Boggs, Dorothy, Cousens, Simon, Moxon, Sarah, Blencowe, Hannah, Baschieri, Angela, Rahman, Ahmed Ehsanur, Tahsina, Tazeen, Zaman, Sojib Bin, Hossain, Tanvir, Rahman, Qazi Sadeq-ur, Ameen, Shafiqul, Arifeen, Shams El, KC, Ashish, Shrestha, Shree Krishna, KC, Naresh P., Singh, Dela, Jha, Anjani Kumar, Jha, Bijay, Rana, Nisha, Basnet, Omkar, Joshi, Elisha, Paudel, Asmita, Shrestha, Parashu Ram, Jha, Deepak, Bastola, Ram Chandra, Ghimire, Jagat Jeevan, Paudel, Rajendra, Salim, Nahya, Shamba, Donat, Manji, Karim, Shabani, Josephine, Shirima, Kizito, Mkopi, Namala, Mrisho, Mwifadhi, Manzi, Fatuma, Jaribu, Jennie, Kija, Edward, Assenga, Evelyne, Kisenge, Rodrick, Pembe, Andrea, Hanson, Claudia, Mbaruku, Godfrey, Masanja, Honorati, Lawn, Joy E.
EN-BIRTH Data Collector Training – Training Module material. (2018)
Day, Louise Tina, Ruysen, Harriet, Gordeev, Vladimir S., Gore-langton, Georgia R., Boggs, Dorothy, Cousens, Simon, Moxon, Sarah G., Blencowe, Hannah, Baschieri, Angela, Rahman, Ahmed Ehsanur, Tahsina, Tazeen, Zaman, Sojib Bin, Hossain, Tanvir, Rahman, Qazi Sadeq-ur, Ameen, Shafiqul, Arifeen, Shams El, KC, Ashish, Shrestha, Shree Krishna, KC, Naresh P., Singh, Dela, Jha, Anjani Kumar, Jha, Bijay, Rana, Nisha, Basnet, Omkar, Joshi, Elisha, Paudel, Asmita, Shrestha, Parashu Ram, Jha, Deepak, Bastola, Ram Chandra, Ghimire, Jagat Jeevan, Paudel, Rajendra, Salim, Nahya, Shamba, Donat, Manji, Karim, Shabani, Josephine, Shirima, Kizito, Mkopi, Namala, Mrisho, Mwifadhi, Manzi, Fatuma, Jaribu, Jennie, Kija, Edward, Assenga, Evelyne, Kisenge, Rodrick, Pembe, Andrea, Hanson, Claudia, Mbaruku, Godfrey, Masanja, Honorati, Lawn, Joy E.
scrapR. (2018)
Kucharski, Adam
11 December 2018
YLubell/SEA-CTN: surveillance-poct. (2018)
Chandna, Arjun, White, L.J., Pongvongsa, T, Mayxay, M, Newton, P.N., Day, N.P.J., Lubell, Yoel
2019
Engagement in agricultural work is associated with reduced leisure time among Agta hunter-gatherers. (2019)
Dyble, Mark, Thorley, Jack, Page, Abigail E., Smith, Daniel, Migliano, Andrea Bamberg
Household air pollution in Nairobi's slums: A long-term policy evaluation using participatory system dynamics. (2019)
Dianati, K., Zimmermann, N., Milner, James, Muindi, K., Ezeh, A., Chege, M., Mberu, B., Kyobutungi, C., Fletcher, H., Wilkinson, P., Davies, M.
4 January 2019
Metagenomic sequencing at the epicenter of the Nigeria 2018 Lassa fever outbreak. (2019)
Kafetzopoulou, L. E., Pullan, S. T., Lemey, P., Suchard, M. A., Ehichioya, D. U., Pahlmann, M., Thielebein, A., Hinzmann, J., Oestereich, L., Wozniak, D. M., Efthymiadis, K., Schachten, D., Koenig, F., Matjeschk, J., Lorenzen, S., Lumley, S., Ighodalo, Y., Adomeh, D. I., Olokor, T., Omomoh, E., Omiunu, R., Agbukor, J., Ebo, B., Aiyepada, J., Ebhodaghe, P., Osiemi, B., Ehikhametalor, S., Akhilomen, P., Airende, M., Esumeh, R., Muoebonam, E., Giwa, R., Ekanem, A., Igenegbale, G., Odigie, G., Okonofua, G., Enigbe, R., Oyakhilome, J., Yerumoh, E. O., Odia, I., Aire, C., Okonofua, M., Atafo, R., Tobin, E., Asogun, D., Akpede, N., Okokhere, P. O., Rafiu, M. O., Iraoyah, K. O., Iruolagbe, C. O., Akhideno, P., Erameh, C., Akpede, G., Isibor, E., Naidoo, D., Hewson, Roger, Hiscox, J. A., Vipond, R., Carroll, M. W., Ihekweazu, C., Formenty, P., Okogbenin, S., Ogbaini-Emovon, E., Günther, S., Duraffour, S.
9 February 2019
migariane/ColliderApp: ColliderAppLuque. (2019)
Fernandez, Miguel Angel Luque, Schomaker, Michael, Redondo-Sanchez, Daniel, Perez, Maria Jose Sanchez, Vaidya, Anand, Schnitzer, Mireille E.
migariane/EASP_NET_SURV: Tutorial Net Survival. (2019)
Fernandez, Miguel Angel Luque
12 February 2019
migariane/Stillbirth: Analysis Stillbirth risk by SES in Spain. (2019)
Fernandez, Miguel Angel Luque, Thomas, Aurielle, Gelaye, Bizu, Racape, Judith, Sanchez-Perez, Maria Jose, Williams, Michelle A.
12 July 2019
mrc-ide/EpiEstim: 2.2-3. (2019)
Cori, Anne, Kamvar, Zhian N., Stockwin, Jake, Jombart, Thibaut, Thompson, Robin, Dahlqwist, Elisabeth
29 July 2019
jstockwin/EpiEstimApp: v1.0.0. (2019)
Stockwin, Jake, Thompson, Robin, Cori, Anne, Jombart, Thibaut, Kamvar, Zhian N., FitzJohn, Rich
9 August 2019
CSFLAM_data set revised. (2019)
Kwizera, Richard, Cresswell, Fiona V., Mugumya, Gerald, Okirwoth, Micheal, Kagimu, Enock, Bangdiwala, Ananta S., Williams, Darlisha A., Rhein, Joshua, Boulware, David R., Meya, David B.
29 January 2020
Every Newborn INDEPTH (EN-INDEPTH) Study - Additional Materials. (2020)
Lawn, Joy E., Waiswa, Peter, Waiswa, Joseph Akuze, Kwesiga, Doris, Blencowe, Hannah, Baschieri, Angela, Gordeev, Vladimir S., EN-INDEPTH Collaborator Group
grid_on
11 February 2020
The DIPLOMATIC Collaboration, Work Package2_Coredata Set. (2020)
von Wissmann, Beatrix, Gadama, Luis, Dube, Queen, Membe-Gadama, Gladys, Stock, Sarah, Chodzaza, Elizabeth, Masesa, Clemens, Crampin, Amelia C., Wood, Rachael
12 February 2020
Multi-Country Model Application for RSV Cost-Effectiveness Policy (McMarcel). (2020)
Willem, Lander, Xiao, Li, Antillon, Marina, Bilcke, Joke, Jit, Mark, Beutels, Philippe
22 April 2020
Religion, Cooperation, Fertility, and Child Outcomes. (2020)
Shaver, John, Power, Eleanor A., Purzycki, Benjamin Grant, Shenk, Mary K, Bulbulia, Joseph A., Sear, Rebecca, Sosis, Richard, Watts, Joseph
20 May 2020
adegenet: Exploratory Analysis of Genetic and Genomic Data. (2020)
Jombart, Thibaut, Kamvar, Zhian N., Collins, Caitlin, Luštrik, Roman, Beugin, Marie-Pauline, Knaus, Brian J, Solymos, Peter, Mikryukov, Vladimir, Schliep, Klaus, Maié, Tiago, Morkovsky, Libor, Ahmed, Ismail, Cori, Anne, Calboli, Federico, Ewing, RJ, Michaud, Frédéric, DeCamp, Rebecca, Courtiol, Alexandre
3 June 2020
ISAC Protocol 17_197R: The effect of renin-angiotensin system inhibitors on haemoglobin. (2020)
Mansfield, Kathryn E., Nitsch, Dorothea, Smeeth, Liam, Iwagami, Masao, Johnston, Rosalynd, Tomlinson, Laurie A.
11 June 2020
Detection of a novel insect-specific flavivirus across ecologically diverse populations of Aedes aegypti on the Caribbean Island of Saint Lucia. (2020)
Walker, Thomas, Jeffries, Claire L., Yakob, Laith, White, Mia, Wilson, Louisia
idmodelr: Infectious Disease Model Library and Utilities. (2020)
Abbott, Sam, Endo, Akira
seabbs/getTBinR. (2020)
Abbott, Sam, Bekker-Nielsen Dunbar, Maria, Smith, Arfon
28 August 2020
Data for: "Foot thermometry with mHeath-based supplementation to prevent diabetic foot ulcers: A randomized controlled trial". (2020)
Lazo-Porras, Maria, Bernabe-Ortiz, Antonio, Taype-Rondan, Alvaro, Gilman, Robert H., Malaga, German, Manrique, Helard, Neyra, Luis, Calderon, Jorge, Pinto, Miguel, Armstrong, David G., Montori, Victor M., Miranda, J. Jaime
6 October 2020
COVID-SCORE: A global survey to assess public perceptions of government responses to COVID-19 (COVID-SCORE-10). (2020)
Lazarus, Jeffrey V., Ratzan, Scott, Palayew, Adam, Billari, Francesco C., Binagwaho, Agnes, Kimball, Spencer, Larson, Heidi J., Melegaro, Alessia, Rabin, Kenneth, White, Trenton M., El-Mohandes, Ayman
30 November 2020
ptti/ptti: Modelling the health and economic impacts of different testing and tracing strategies for COVID-19 in the UK. (2020)
Colbourn, Tim, Waites, William, Manheim, David, Sturniolo, Simone, Kerr, Cliff C., Panovska-Griffiths, Jasmina, Colbourn, Greg
8 January 2021
Supplementary Appendix 1b of "Optimizing geographical accessibility to primary health care at community level in Niger: a geospatial analysis". (2021)
Oliphant, Nicholas P, Ray, Nicolas, Bensaid, Khaled, Ouedraogo, Adama, Gali, Asma Yaroh, Habi, Oumarou, Maazou, Ibrahim, Panciera, Rocco, Muñiz, Maria, Manda, Samuel OM, Sy, Zeynabou, Jackson, Debra, Doherty, Tanya
10 March 2021
Projecting the risk of mosquito-borne diseases in a warmer and more urbanised world: a multi-model multi-scenario intercomparison study. (2021)
Colón-González, Felipe J, Sewe, Maquins Odhiambo, Tompkins, Adrian M, Sjödin, Henrik, Casallas, Alejandro, Rocklöv, Joacim, Caminade, Cyril, Lowe, Rachel
29 March 2021
ISAC Protocol 19_129 - Common infections and incident dementia: a historical cohort study using UK primary and secondary care data. (2021)
Muzambi, Rutendo, Bhaskaran, Krishnan, Brayne, Carol, Chaturvedi, Nish, Smeeth, Liam, Warren-Gash, Charlotte
Validation of Correlates of Risk of TB Disease in High Risk Populations (CORTIS-HR) Study: Public, subject-level RISK11 signature scores and metadata. (2021)
Mendelsohn, Simon C, Fiore-Gartland, Andrew, Penn-Nicholson, Adam, Mulenga, Humphrey, Kimbung, Stanley, Borate, Bhavesh, Hadley, Katie, Hikuam, Chris, Musvosvi, Munyaradzi, Bilek, Nicole, Erasmus, Mzwandile, Jaxa, Lungisa, Raphela, Rodney, Nombida, Onke, Kaskar, Masooda, Sumner, Tom, White, Richard G, Innes, Craig, Brumskine, William, Hiemstra, Andriëtte, Malherbe, Stephanus T, Hassan-Moosa, Razia, Tameris, Michèle, Walzl, Gerhard, Naidoo, Kogieleum, Churchyard, Gavin, Scriba, Thomas J, Hatherill, Mark
1 April 2021
Additional file 2 of Complex emergencies and the control and elimination of neglected tropical diseases in Africa: developing a practical approach for implementing safe and effective mapping and intervention strategies. (2021)
Kelly-Hope, Louise A., Sanders, Angelia M., Harding-Esch, Emma, Willems, Johan, Ahmed, Fatima, Vincer, Fiona, Hill, Rebecca
27 April 2021
Healthcare use by people who use illicit opioids (HUPIO): development of a cohort based on electronic primary care records in England (extended data). (2021)
Lewer, Dan, Padmanathan, Prianka, Arfeen, Muhammad Najam Ul, Denaxas, Spiros, Forbes, Harriet, Gonzalez-Izquierdo, Arturo, Hickman, Matt
5 May 2021
BayesSUR: Bayesian Seemingly Unrelated Regression. (2021)
Banterle, Marco, Zhao, Zhi, Bottolo, Leonardo, Richardson, Sylvia, Leoncio, Waldir, Lewin, Alexandra, Zucknick, Manuela, Zhao, Zhi
Supplementary data files & video for Carrasco-Tenezaca published in the Journal of the Royal Society Interface, 'The relationship between house height and mosquito house entry: an experimental study in rural Gambia. (2021)
Lindsay, Steve, Carrasco-Tenezaca, Majo, Jawara, Musa, Bradley, John, D'Alessandro, Umberto, Jeffries, David, Pinder, Margaret, Knudsen, Jakob
24 May 2021
WOMAN-PharmacoTXA Trial: Pharmacokinetics and pharmacodynamics of tranexamic acid in women having caesarean section birth - Extended data. (2021)
Shakur-Still, Haleema, Arribas, Monica, Roberts, Ian, Chaudhri, Rizwana, Geer, Amber, Prowse, Danielle, Lubeya, Mwansa Ketty, Kayani, Aasia, Javaid, Kiran, Grassin Delyle, Stanislas
description
6 June 2021
Additional file 1 of A framework for handling missing accelerometer outcome data in trials. (2021)
Tackney, Mia S., Cook, Derek G., Stahl, Daniel, Ismail, Khalida, Williamson, Elizabeth, Carpenter, James
16 June 2021
PierreMasselot/emdr. (2021)
Masselot, Pierre
Supplemental material for: The Long and Winding Road: Archiving and Re-Using Qualitative Data from 12 Research Projects Spanning 16 Years. (2021)
Dodds, Catherine, Keogh, Peter, Bourne, Adam, McDaid, Lisa, Squire, Corinne, Weatherburn, Peter, Young, Ingrid
21 June 2021
Optimising health and economic impacts of COVID-19 vaccine rollout strategies in the WHO European Region. (2021)
Liu, Yang, Sandmann, Frank G., Barnard, Rosanna C., Pearson, Carl A.B., CMMID Working-19 Working Group, Pastore, Roberta, Pebody, Richard, Flasche, Stefan, Jit, Mark
9 July 2021
Analysis for: The changing relationship between genetic risk and cognitive decline across birth cohorts. (2021)
Courtin, Emilie, Greener, Robert, Weiss, Jordan, Ware, Erin B., Dowd, Jennifer B., Rehkopf, David
28 July 2021
opensafely/anticoagulants-research. (2021)
Wong, Angel, Bacon, Seb, Walker, Alex, Davy, Simon, Inglesby, Peter, MacKenna, Brian
9 August 2021
Code to replicate "Quantifying impacts of the COVID-19 pandemic through life expectancy losses". (2021)
Aburto, José Manuel, Schöley, Jonas, Kashnitsky, Ilya, Knowles, Ian, Zhang, Luyin, Rahal, Charles, Missov, Trifon I, Dowd, Jennifer B, Mills, Melinda C, Kashyap, Ridhi
12 August 2021
LSHTM-ORK/ODK_Biometrics. (2021)
Roberts, Chrissy, Stott, Callum
yangclaraliu/armslist_scraping. (2021)
Drake, Coleman, Hernandez, Ashley, Liu, Yang, Schwartz, Adam H., Sundaram, Maria
16 August 2021
reichlab/covidHubUtils. (2021)
Wang, Serena Yijin, Stark, Ariane, Evan Ray, Bosse, Nikos, Reich, Nicholas G, Sherratt, Katharine, Shah, Apurv, Wattanachit, Nutcha, Khoale1096, Huang, Yuxin David, Gerding, Aaron, Gruson, Hugo, Cramer, Estee, Shandross, Li, Abbott, Sam, Funk, Sebastian
23 August 2021
Analysis of non-communicable disease reports contributing to UN high-level meeting process (2000-2020). (2021)
Millington, James, Okpako, Oritsematosan, Herrick, Clare
MatchThem: Matching and Weighting Multiply Imputed Datasets. (2021)
Pishgar, Farhad, Greifer, Noah, Leyrat, Clemence, Stuart, Elizabeth
21 September 2021
ropensci/drake. (2021)
Landau, Will, Landau, Will, Bond-Lamberty, Ben, Strasiotto, Matthew, McBain, Miles, Müller, Kirill, Mahr, TJ, Hughes, Ellis, Ross, Noam, Bell, Kendon, Ingerson, Sean, Aden-Buie, Garrick, Gomolka, Matthias, Knoblauch, Nicholas, Albers, Sam, brendanf, evalparse, Denney, Bill, Muir, Chris, Barrett, Malcolm, Krug, Rainer M, Kehayas, Vassilis, Schratz, Patrick, Zhao, Bruce, Hlynur, Gruson, Hugo, Jasper, Ooms, Jeroen, Walthert, Lorenz, Dray, Matt
15 November 2021
Replication Data for: Mortality in rural coastal Kenya measured using the Kilifi Health and Demographic Surveillance System: a 16-year descriptive analysis. (2021)
Otiende, Mark, Bauni, Evasius, Nyaguara, Amek, Amadi, David, Nyundo, Christopher, Tsory, Emmanuel, Walumbe, David, Kinuthia, Michael, Kihuha, Norbert, Kahindi, Michael, Nyutu, Gideon, Moisi, Jennifer, Deribew, Amare, Agweyu, Ambrose, Marsh, Kevin, Tsofa, Benjamin, Bejon, Philip, Bottomley, Christian, Williams, Thomas N, Scott, J Anthony G
6 December 2021
r-spatialecology/shar. (2021)
Hesselbarth, Maximilian, actions-user, Sciaini, Marco, Hereñú, Darío, Gruson, Hugo, Etherington, Thomas
15 December 2021
Extended Data: Iron supplementation of breastfed Gambian infants from 6 weeks to 6 months of age: Protocol for a randomised controlled trial. (2021)
Stelle, Isabella, Bah, Mamadou, Silverio, Sergio A., Verhoef, Hans, Comma, Ebrima, Prentice, Andrew M., Moore, Sophie E., Cerami, Carla
30 January 2022
Dataset used in the assessment of the article "Basic urban services fail to neutralise environmental determinants of 'rattiness', a composite metric of rat abundance". (2022)
Carvalho-Pereira, Ticiana, Eyre, Max T, Zeppelini, Caio G, Espirito Santo, Vivian F, Santiago, Diogo C, Santana, Roberta, Palma, Fabiana, Reis, Marbrisa, Lustosa, Ricardo, Khalil, Hussein, Diggle, Peter J, Giorgi, Emanuele, Costa, Federico, Begon, Michael
19 April 2022
Additional file 1 of Planning a method for covariate adjustment in individually randomised trials: a practical guide. (2022)
Morris, Tim P., Walker, A. Sarah, Williamson, Elizabeth J., White, Ian R.
Additional file 2 of Planning a method for covariate adjustment in individually randomised trials: a practical guide. (2022)
Morris, Tim P., Walker, A. Sarah, Williamson, Elizabeth J., White, Ian R.
20 May 2022
Supplementary appendix 1b of Oliphant NP, Ray N, Curtis A et al. Optimising scale and deployment of community health workers in Sierra Leone: a geospatial analysis. 2022. (2022)
Oliphant, NP, Ray, Nicolas, Curtis, Andrew, Musa, Elizabeth, Sesay, Momodou, Kandeh, Joseph, Kamara, Anitta, Chimoun, Ebeny Francois Temgbait, Jackson, Debra, Doherty, Tanya
25 May 2022
TBVAX Model. (2022)
Clark, Rebecca, Mukandavire, Christinah, Weerasuriya, Chathika, Bakker, Roelof, White, Richard G
zadyson/SNV_Stats_Generator. (2022)
Dyson, Zoe Anne
13 June 2022
LinaMadaniyazi/Assessing-seasonality-and-the-role-of-its-potential-drivers-in-environmental-epidemiology-a-tutorial. (2022)
Madaniyazi, Lina, Tobias, Aurelio, Kim, Yoonhee, Chung, Yeonseung, Armstrong, Ben, Hashizume, Masahiro
21 June 2022
Duration of protection of CoronaVac plus heterologous BNT162b2 booster in the Omicron period in Brazil. (2022)
Cerqueira-Silva, Thiago, de Araujo Oliveira, Vinicius, Paixão, Enny S., Júnior, Juracy Bertoldo, Penna, Gerson O., Werneck, Guilherme L., Pearce, Neil, Barreto, Maurício L., Boaventura, Viviane S., Barral-Netto, Manoel
NaomiWaterlow/NhaTrang_flu_rsv_interaction. (2022)
Waterlow, Naomi
fkrauer/RSV-seasonality-public. (2022)
Krauer, Fabienne
24 June 2022
raphaelvallat/pingouin. (2022)
Vallat, Raphael, Appelhoff, Stefan, Spaak, Eelke, JElfner, systole-docs, Tan, Gansheng, Paulino, Arthur, Dominic C., Leicas, Nárai, Ádám, Wallan, Samuel, Barthélemy, Quentin, Weixin, Jin, Singaravelan, Karthikeyan, Crabtree, Kyle N., Punčochář, Michal, Legrand, Nicolas, Jolly, Eshin, Cederstrand, Erik, To, Isaac, Hale, Jeff, Kahle, Michal, Mathot, Sebastiaan, Wase, Viktor, Filipec, Vojtech, gedeck, Libiseller-Egger, Julian, xfz329
6 August 2022
hamishgibbs/facebook_population_2020_2021. (2022)
Gibbs, Hamish, Waterlow, Naomi R., Cheshire, James, Danon, Leon, Liu, Yang, Grundy, Chris, Kucharski, Adam J., Eggo, Rosalind M.
11 August 2022
ARUKCFE/BmiAlgorithm. (2022)
Kopec-Harding, Kamilla, Costello, Ruth
akira-endo/Intro-PMCMC. (2022)
Endo, Akira, Van leeuwen, Edwin, Jomaba, M
akira-endo/monkeypox_heavytail: Heavy-tailed sexual contact networks and the epidemiology of monkeypox outbreak in non-endemic regions. (2022)
Endo, Akira, Murayama, Hiroaki, Abbott, Sam, Ratnayake, Ruwan, Pearson, Carl A. B., Edmunds, W. John, Fearon, Elizabeth, Funk, Sebastian
23 August 2022
akira-endo/schooldynamics_FluMatsumoto14-15: Simulating respiratory disease transmission within and between classrooms to assess pandemic management strategies at schools. (2022)
Endo, Akira, Uchida, Mitsuo, Liu, Yang, Atkins, Katherine E., Kucharski, Adam J., Funk, Sebastian
3 October 2022
Biometric linkage of longitudinally collected electronic case report forms and confirmation of subject identity: An open framework for Open Data Kit (ODK) and related tools. (2022)
Roberts, Chrissy, Stott, Callum, Lal, Sham, Marks, Michael, Shawe-Taylor, Marianne, Chaudhry, Zain
folder_zip
5 October 2022
Bisaloo/asymptor. (2022)
Gruson, Hugo, actions-user
Estimating national-level measles case–fatality ratios in low-income and middle-income countries: an updated systematic review and modelling study. (2022)
Sbarra, Alyssa N., Mosser, Jonathan F, Jit, Mark, Ferrari, Matthew, Ramshaw, Rebecca E., O'Connor, Patrick, Krause, L Kendall, Rogowski, Emma LB, Portnoy, Allison
kelwyres/Kaptive-Web. (2022)
Wick, Ryan, kelwyres, Pan, Alwyn, Stanton, Tom, Watts, Stephen, Lee, Thanh
14 October 2022
Stan code and input data for estimating adjusted seroprevalence. (2022)
Lucinde, Ruth K., Mugo, Daisy, Bottomley, Christian, Karani, Angela, Gardiner, Elizabeth, Aziza, Rabia, Gitonga, John N., Karanja, Henry, Nyagwange, James, Tuju, James, Wanjiku, Perpetual, Nzomo, Edward, Kamuri, Evans, Thuranira, Kaugiria, Agunda, Sarah, Nyutu, Gideon, Etyang, Anthony O., Adetifa, Ifedayo M. O., Kagucia, Eunice, Uyoga, Sophie, Otiende, Mark, Otieno, Edward, Ndwiga, Leonard, Agoti, Charles N., Aman, Rashid A., Mwangangi, Mercy, Amoth, Patrick, Kasera, Kadondi, Nyaguara, Amek, Ng’ang’a, Wangari, Ochola, Lucy B., Namdala, Emukule, Gaunya, Oscar, Okuku, Rosemary, Barasa, Edwine, Bejon, Philip, Tsofa, Benjamin, Ochola-Oyier, L. Isabella, Warimwe, George M., Agweyu, Ambrose, Scott, J. Anthony G., Gallagher, Katherine E.
14 November 2022
Additional file 1 of Inequalities in the impact of COVID-19-associated disruptions on tuberculosis diagnosis by age and sex in 45 high TB burden countries. (2022)
McQuaid, C. Finn, Henrion, Marc Y. R., Burke, Rachael M., MacPherson, Peter, Nzawa-Soko, Rebecca, Horton, Katherine C.
15 January 2023
Relative role of border restrictions, case finding and contact tracing in controlling SARS-CoV-2 in the presence of undetected transmission: a mathematical modelling study. (2023)
Pung, Rachael, Clapham, Hannah E, Russell, Timothy W., Lee, Vernon J., Kucharski, Adam J.
23 January 2023
jodyphelan/host-pathogen. (2023)
Phelan, Jody
mrc-ide/deterministic-malaria-model: nets_paper. (2023)
Unwin, Juliette, Challenger, Joseph, Watson, O. J., Hellewell, Joel, FitzJohn, Rich, Sherrard-Smith, Ellie
3 February 2023
tjhladish/covid-abm: Active Vaccination Experiment 2023-02-02. (2023)
Pillai, Alexander N., Hladish, Thomas, Pearson, Carl A. B., Toh, Ben, Noah4944, Stoltzfus, Arlin
7 February 2023
Effectiveness of BNT162b2 and ChAdOx1 against SARS-CoV-2 household transmission. (2023)
Clifford, Samuel, Hackman, Jada
yangclaraliu/covid_vac_africa: BMCMed_R3. (2023)
Liu, Yang, Procter, Simon R, Pearson, Carl A. B., Madriz Montero, Andres, Torres-Rueda, Sergio, Asfaw, Elias, Uzochukwu, Benjamin, Drake, Tom, Bergren, Eleanor, Eggo, Rosalind M., Ruiz, Francis, Ndembi, Nicaise, Nonvignon, Justice, Jit, Mark, Vassall, Anna
10 February 2023
Supplementary material from "A biphasic model of lifespan in nematode Caenorhabditis elegans worm". (2023)
Mulla, Suhayl, Ludlam, Adele R., Elragig, Aiman, Slack, Cathy, Balklava, Zita, Stich, Michael, Cheong, Alex
1 April 2023
Impact of vaccinations, boosters and lockdowns on COVID-19 waves in French Polynesia. (2023)
Chapman, Lloyd A.C., Aubry, Maite, Maset, Noemie, Russell, Timothy, Knock, Edward S, Lees, John A, Mallet, Henri-Pierre, Cao-Lormeau, Van-Mai, Kucharski, Adam J.
26 April 2023
Data and R-code to accompany 'Towards an Early Warning System for Leptospirosis in North-Eastern Argentina'. (2023)
Lotto Batista, Martín, Rees, Eleanor M., Gómez, Andrea, López, Soledad, Castell, Stefanie, Kucharski, Adam J., Ghozzi, Stéphane, Müller, Gabriela V, Lowe, Rachel
3 May 2023
Microclimate dataset of the SAFE project landscape. (2023)
Jucker, Tommaso, Hardwick, Stephen R, Both, Sabine, Elias, Dafydd MO, Ewers, Robert M, Milodowski, David T, Saager, Elise, Iwamura, Takuya, Murray, Kris, Swinfield, T, Coomes, David A
12 June 2023
Restricted Randomisation Procedure and codes–inSCALE Mozambique. (2023)
Soremekun, Seyi, Källander, Karin, Lingam, Raghu, Branco, Ana-Cristina Castel, Batura, Nehu, Strachan, Daniel Ll, Muiambo, Abel, Salomao, Nelson, Condoane, Juliao, Benhane, Fenias, Kasteng, Frida, Vassall, Anna, Hill, Zelee, ten Asbroek, Guus, Meek, Sylvia, Tibenderana, James, Kirkwood, Betty
SHINE 7-year Follow-up. (2023)
Piper, Joseph, Ntozini, Robert, Prendergast, Andrew
18 July 2023
Assessing the impact of the 2018 Changchun Changsheng vaccine incident on childhood vaccination in China. (2023)
Hou, Zhiyuan, Lai, Xiaozhen, Liu, Yang, Jit, Mark, Larson, Heidi, Hai, Fang
27 August 2023
Differential effects of antiretroviral treatment on immunity and gut microbiome composition in people living with HIV in rural versus urban Zimbabwe. (2023)
Burkhart Colorado, Angela Sofia, Lazzaro, Alessandro, Preston, Charles, Nusbacher, Nichole, Boyd, Kathryn, Fiorillo, Suzanne, Martin, Casey, Siebert, Janet, Campbell, Thomas
16 September 2023
Additional file 3 of Assessing the impact of the “malaria supporters project” intervention to malaria control in the Brazilian Amazon: an interrupted time-series analysis. (2023)
Garcia, Klauss Kleydmann Sabino, Soremekun, Seyi, Bottomley, Christian, Abrahão, Amanda Amaral, de Miranda, Cristiano Barreto, Drakeley, Chris, Ramalho, Walter Massa, Siqueira, André M
29 September 2023
epiverse-trace/epiparameter. (2023)
Lambert, Joshua, Gruson, Hugo, Kucharski, Adam J., Gupte, Pratik, Salmon, Maëlle, Campos, Andree Valle, Monticone, Pietro
21 October 2023
DAISIE: Dynamical Assembly of Islands by Speciation, Immigration and Extinction. (2023)
Etienne, Rampal S., Valente, Luis, Phillimore, Albert B., Haegeman, Bart, Lambert, Joshua W., Santos Neves, Pedro, Xie, Shu, Bilderbeek, Richèl J.C., Hildenbrandt, Hanno, Hauffe, Torsten, Laudanno, Giovanni, Kristensen, Nadiah, Scherrer, Raphael
23 October 2023
rsetienne/DAISIE. (2023)
Neves, Pedro Santos, Lambert, Joshua W., Etienne, Rampal S., Bilderbeek, Richel, Xie, Shu, Valente, Luis, Hildenbrandt, H, Scherrer, Raphaël, Yangshen0325
15 November 2023
RNA Sequence data analysis using DESeq2 pipeline. (2023)
Namulondo, Joyce, Nyangiri, Oscar Asanya, Kimuda, Magambo Phillip, Nambala, Peter, Nassuuna, Jacent, Egesa, Moses, Nerima, Barbara, Biryomumaisho, Savino, Mugasa, Claire Mack, Nabukenya, Immaculate, Kato, Drago, Elliott, Alison, Noyes, Harry, Tweyongyere, Robert, Matovu, Enock, Mulindwa, Julius
24 November 2023
epiverse-trace/vaccineff: vaccineff 0.0.1. (2023)
Quevedo, David Santiago, Gupte, Pratik, Gomez, Geraldine, Gruson, Hugo, Hartgerink, Chris, tracelac, Cucunubá, Zulma M.
29 November 2023
thimotei/legacy_ct_modelling: Final version. (2023)
Abbott, Sam, Russell, Timothy W., Hellewell, Joel, Kucharski, Adam J.
timriffe/covid_age. (2023)
Riffe, Tim, Acosta, Enrique, Kamal, Manal, Donzowa, Jessica, mskniffka, Dudel, Christian, Cimentada, Jorge, Alburez, Diego, aishwaryamuralikrishnan, Aburto, José Manuel, Pascariu, Marius D., Del Fava, Emanuele, Ribeiro, Filipe
11 December 2023
epidemery/subclinical_transmission. (2023)
Emery, Jon C, Dodd, Peter J, Banu, Sayera, Frascella, Beatrice, Garden, Frances L, Horton, Katherine C, Hossain, Shahed, Law, Irwin, van Leth, Frank, Marks, Guy B, Nguyen, Hoa Binh, Nguyen, Hai Viet, Onozaki, Ikushi, Quelapio, Maria Imelda D, Richards, Alexandra S, Shaikh, Nabila, Tiemersma, Edine W, White, Richard G, Zaman, Khalequ, Cobelens, Frank, Houben, Rein MGJ
2024
Health facility assessment of small and sick newborn care in low- and middle-income countries: systematic tool development and operationalisation with NEST360 and UNICEF. (2024)
Penzias, Rebecca E., Bohne, Christine, Ngwala, Samuel K., Zimba, Evelyn, Lufesi, Norman, Rashid, Ekran, Gicheha, Edith, Odedere, Opeyemi, Dosunmu, Olabisi, Tillya, Robert, Shabani, Josephine, Cross, James H., Liaghati-Mobarhan, Sara, Chiume, Msandeni, Banda, George, Chalira, Alfred, Wainaina, John, Gathara, David, Irimu, Grace, Adudans, Steve, James, Femi, Tongo, Olukemi, Ezeaka, Veronica Chinyere, Msemo, Georgina, Salim, Nahya, Day, Louise T., Powell-Jackson, Timothy, Chandna, Jaya, Majamanda, Maureen, Molyneux, Elizabeth M., Oden, Maria, Richards-Kortum, Rebecca, Ohuma, Eric O., Paton, Chris, Hailegabriel, Tedbabe, Gupta, Gagan, Lawn, Joy E.
17 January 2024
emmahodcroft/ncov_2021: Release for Geneva Manuscript. (2024)
Hodcroft, Emma, Zuber, Moira, Harkins, Elias, Neher, Richard, Wagner, Cassia, Huddleston, John, Bedford, Trevor, Moncla, Louise H, Hadfield, James, fzhang12, Sibley, Thomas, Saleh, Ahmad, falnaji, Xueying, aniafijarczyk, Nezu, Tomoyuki, Müller, Nicola Felix, Gall, Astrid, Brito, Anderson, Villabona Arenas, Ch. Julian, Bell, Sidney, Kozyreva, Varvara, Eren, Puller, Vadim, Han, Alvin X., irak, Rimaz, Hossein, Ghafari, Mahan, Sato, Takeshi, Lee, Hanbin
johntaz/nhs-opt-outs. (2024)
Tazare, John, Henderson, Alasdair
12 March 2024
amrnet/amrnet: AMRnet-v1.0. (2024)
Cerdeira, Louise, Sharma, Vandana, Maranga, Mary, Carey, Megan, Dyson, Zoe Anne, Holt, Kathryn E.
28 March 2024
VAC4EU/CVM: WP4 SCCS sensitivity code for publication/Zenodo. (2024)
Messina, Davide, Paoletti, Olga, Belitser, Svetlana, Gini, Rosa M., Limoncella, Giorgio, Schultze, Anna
epiforecasts/multi-model-information: Publication release. (2024)
Sherratt, Katharine, Funk, Sebastian
9 April 2024
finalsize: Calculate the Final Size of an Epidemic. (2024)
Gupte, Pratik, Van Leeuwen, Edwin, Kucharski, Adam, Eggo, Rosalind M., Gruson, Hugo, Jombart, Thibaut, Valle Campos, Andree, Lambert, Joshua W.
25 April 2024
Supplementary material for "Mapping the evidence of novel plant-based foods: A systematic review of nutritional, health, and environmental impacts in high-income countries". (2024)
Nájera Espinosa, Sarah, Hadida, Genevieve, Jelmar Sietsma, Anne, Alae-Carew, Carmelia, Turner, Grace, Green, Rosemary, Picetti, Roberto, Pastorino, Silvia, Scheelbeek, Pauline
30 April 2024
epiverse-trace/serofoi. (2024)
Domínguez, Nicolás Torres, Gruson, Hugo, Pavlich-Mariscal, Jaime, Gomez, Geraldine, Gámez López, Miguel Enrique, Cucunubá, Zulma M., tracelac, Hartgerink, Chris, Azam, James, ben18785
12 June 2024
cfr: Estimate Disease Severity and Case Ascertainment. (2024)
Gupte, Pratik R., Kucharski, Adam J., Russell, Timothy W., Lambert, Joshua W., Gruson, Hugo, Taylor, Tim, Azam, James M., Degoot, Abdoelnaser M., Funk, Sebastian
17 June 2024
cleanepi: Clean and Standardize Epidemiological Data. (2024)
Mané, Karim, Jombart, Thibaut, Bah, Bubacarr, Ahadzie, Bankolé, Mohammed, Nuredin, Degoot, Abdoelnaser M., Gruson, Hugo, Gupte, Pratik R., Azam, James M., Lambert, Joshua W., Hartgerink, Chris
21 June 2024
Source files for 3D printed hamster anaesthesia delivery nosecone. (2024)
Langston, Harry, Fortes Francisco, Amanda, Doidge, Ciaran, Roberts, Chrissy H., Khan, Archie A., Jayawardhana, Shiromani, Taylor, Martin C., Kelly, John M., Lewis, Michael D.
13 August 2024
Additional file 2 of Unsupervised title and abstract screening for systematic review: a retrospective case-study using topic modelling methodology. (2024)
Natukunda, Agnes, Muchene, Leacky K.
A comparison of covariate adjustment approaches under model misspecification in individually randomized trials. (2024)
Tackney, Mia S., Morris, Tim, White, Ian, Leyrat, Clemence, Diaz-Ordaz, Karla, Williamson, Elizabeth
4 September 2024
klebgenomics/Kleborate: v3.0.0. (2024)
Ryan Wick, Holt, Kathryn E., marlam89, kelwyres, Maranga, Mary, Petit III, Robert A., da Silva, Anders Goncalves, Deveaud, Eric, Lampa, Samuel, Stanton, Tom
23 September 2024
EpiNow2: Estimate Real-Time Case Counts and Time-Varying Epidemiological Parameters. (2024)
Abbott, Sam, Hellewell, Joel, Sherratt, Katharine, Gostic, Katelyn, Hickson, Joe, Badr, Hamada S., DeWitt, Michael, Azam, James M., EpiForecasts, Funk, Sebastian
October 2024
theosanderson/taxonium. (2024)
Sanderson, Theo, Kramer, Alex, Goater, Richard, Hinrichs, Angie, L'YI, Sehi, Roemer, Cornelius, Kwon, Sung, Vargha, Koorous
21 October 2024
nextstrain/nextclade. (2024)
Aksamentov, Ivan, Neher, Richard, Roemer, Cornelius, mt-gitlocalize, Parker, Anna Anya, Lin, Victor, Sibley, Thomas, Negrón, Daniel Antonio, Nextstrain bot, Anderson, John SJ, Snyk bot, Hodcroft, Emma, Actat, Rubinsteyn, Alex, Grüning, Björn, Tegomoh, Bryan, Chen, Chaoran, Bottoms, Christopher, Maguire, Finlay, Huddleston, John, Lee, Jover, Sanderson, Theo, Harkins, Elias
4 November 2024
rachaelpung/temporal_networks. (2024)
Pung, Rachael, Kucharski, Adam J., Firth, Josh, Russell, Timothy W., Rogers, Tim, Lee, Vernon
10 January 2025
AmpliconTyper. (2025)
Spadar, Anton, Mahindroo, Jaspreet, Troman, Catherine, Owusu, Michael, Adu-Sarkodie, Yaw, Abraham, Dilip, Blossom Benny, Govindan, Karthikeyan, Mohan, Venkata Raghava, Dyson, Zoe Anne, Grassly, Nicholas, Holt, Kathryn E.
12 February 2025
ecthomson/Contamination-Filter. (2025)
Thomson, Emma C.
ecthomson/Contamination-Phylogeny. (2025)
Thomson, Emma C.
epinowcast/epidist. (2025)
Abbott, Sam, Howes, Adam, Park, Sang Woo, Funk, Sebastian, Bayer, Damon, DeWitt, Michael
11 March 2025
epiverse-trace/tutorials-late. (2025)
Campos, Andree Valle, Minter, Amanda, Gruson, Hugo, Degoot, Abdoelnaser M., Gupte, Pratik, Hartgerink, Chris, Azam, James M.
24 March 2025
MGDb 01. Scope and General Concepts. (2025)
Modell, Bernadette, Malherbe, Helen, Blencowe, Hannah, Mooorthie, Sowmiya, Petrou, Mary, Darlinson, Matthew, Lawn, Joy
description
8 April 2025
A protocol for emulating four published randomised controlled trials using registry data: effects of antibiotics in cystic fibrosis. (2025)
Granger, Emily, Allen, Lorna, Charman, Susan, Clarke, Sarah, Davies, Gwyneth, Frost, Freddy, Plowman, Hannah, Tomlinson, Laurie A., Keogh, Ruth
description
11 April 2025
Data and R-code to accompany 'Modelling the impact of climate and the environment on the spatiotemporal dynamics of Lyme borreliosis in Germany'. (2025)
Lotto Batista, Martín, Carvalho, Bruno, Gibb, Rory, Solaraju-Murali, Balakrishnan, Flasche, Stefan, Castell, Stefanie, Ghozzi, Stéphane, Lowe, Rachel
Data and code from "The overlapping global distribution of dengue, chikungunya, Zika and yellow fever". (2025)
Lim, Ahyoung, Brady, Oliver J.
15 April 2025
Data Analysis Plan for Event (Heatwave and High Air Pollution) and Non-Event (Average Temperature and Moderate/Good Air Quality) Survey. (2025)
Bwire, Constance, Hughes, Robert, Milner, James, Yeung, Shunmay, Bonell, Ana, Bonnet, Gabrielle
description
8 May 2025
kingaa/pomp. (2025)
King, Aaron A, O'Dea, Eamon, Asfaw, Kidus, Wheeler, Jesse, Breto, Carles, Ionides, Edward, Akinshin, Andrey, Voipio, Timo, Funk, Sebastian