12 December 2005

Griffin, J (2005). INTCENS: Stata module to perform interval-censored survival analysis. [Data Collection]. EconPapers. https://econpapers.repec.org/RePEc:boc:bocode:s453501

2007

Lakhani, A, Olearnik, H and Eayres, D (2007). Clinical and Health Outcomes Knowledge Base. [Data Collection]. The Information Centre for Health and Social care / National Centre for Health Outcomes Development, London. http://digital.nhs.uk/article/1885/Compendium-of-Population-Health-Indicators

2009

Carver, T, Thomson, N, Bleasby, A, Berriman, M and Parkhill, J (2009). DNAPlotter: circular and linear interactive genome visualization. [Data Collection]. Github. http://sanger-pathogens.github.io/Artemis/DNAPlotter/

Almagro-Garcia, J and Clark, T (2009). SnoopCGH. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. http://snoopcgh.sourceforge.net/

7 May 2009

Watkins, NA, Gusnanto, A, de Bono, B, De, S, Miranda-Saavedra, D, Hardie, DL, Angenent, WGJ, Attwood, AP, Ellis, PD, Erber, W, Foad, NS, Garner, SF, Isacke, CM, Jolley, J, Koch, K, Macaulay, IC, Morley, SL, Rendon, A, Rice, KM, Taylor, N, Thijssen-Timmer, DC, Tijssen, MR, van der Schoot, CE, Wernisch, L, Winzer, T, Dudbridge, F, Buckley, CD, Langford, CF, Teichmann, S, Göttgens, B and Ouwehand, WH (2009). A HaemAtlas: characterizing gene expression in differentiated human blood cells. [Data Collection]. Blood. https://doi.org/10.1182/blood-2008-06-162958

17 July 2009

Perkins, TT, Kingsley, RA, Fookes, MC, Gardner, PP, James, KD, Yu, L, Assefa, SA, He, M, Croucher, NJ, Pickard, DJ, Maskell, DJ, Parkhill, J, Choudhary, J, Thomson, NR and Dougan, G (2009). A Strand-Specific RNA–Seq Analysis of the Transcriptome of the Typhoid Bacillus Salmonella Typhi. [Data Collection]. PLOS Genetics. https://doi.org/10.1371/journal.pgen.1000569

7 April 2010

Grundy, E (2010). Ethnicity and Economic Activity: Longitudinal Perspectives, 1971-2006. [Data Collection]. UK Data Service, Colchester, Essex, United Kingdom. https://doi.org/10.5255/UKDA-SN-6416-1

Grundy, E (2010). Limiting Long-Term Illness: Longitudinal Perspectives, 1971-2006. [Data Collection]. UK Data Service, Colchester, Essex, UK. https://doi.org/10.5255/UKDA-SN-6418-1

20 February 2011

Bhaskaran, K (2011). DATACHECK: Stata module to perform data checks and produce informative output. [Data Collection]. EconPapers. https://econpapers.repec.org/RePEc:boc:bocode:s457246

2012

Roberts, C (2012). Droplet Digital PCR (ddPCR) data analysis scripts. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.31.

Roberts, C, Mtuy, T, Derrick, T, Burton, M and Holland, M (2012). Eyescores - Electronic Data Capture and photographic evidence collection platform for biological field studies. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.32.

Coll, F, Mallard, K, Preston, M, Bentley, S, Parkhill, J, Mcnerney, R, Martin, N and Clark, T (2012). In Silico Spoligotyping. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://web.archive.org/web/20140726124623/http://pathogenseq.lshtm.ac.uk/

Preston, MD, Manske, M, Horner, N, Assefa, S, Campino, S, Auburn, S, Zongo, I, Ouedraogo, J, Nosten, F, Anderson, T and Clark, T (2012). VCF Viewer (VARB). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://web.archive.org/web/20140726124623/http://pathogenseq.lshtm.ac.uk/

9 April 2013

Langan, S, Smeeth, L, Margolis, DJ and Thomas, SL (2013). Herpes Zoster Vaccine Effectiveness against Incident Herpes Zoster and Post-herpetic Neuralgia in an Older US Population: A Cohort Study. [Data Collection]. PLOS Medicine. https://doi.org/10.1371/journal.pmed.1001420

20 August 2013

UCLEB Consortium (2013). Population Genomics of Cardiometabolic Traits: Design of the UCL-LSHTM-Edinburgh-Bristol (UCLEB) Consortium. [Data Collection]. PLoS One. https://doi.org/10.1371/journal.pone.0071345

22 August 2013

Fielding, K, Lewis, J and Jiang, S (2013). Effectiveness of electronic reminders to improve medication adherence in tuberculosis patients: a cluster-randomised trial. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.4.

2014

Gautham, M, Subharwal, M, Gupta, S, Spicer, N and Mishra, N (2014). IDEAS project - Private sector health data sharing study in Uttar Pradesh. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.115.

20 January 2014

Cox, S, Halcox, J, Prentice, A and Kamala, BA (2014). Vascular Function Intervention Trial in sickle cell disease (V-FIT): Trial Protocol. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

May 2014

Coll, F, Preston, M, Guerra-Assunção, JA, Hill-Cawthorn, G, Harris, D, Perdigão, J, Viveiros, M, Portugal, I, Drobniewski, F, Gagneux, S, Glynn, JR, Pain, A, Parkhill, J, McNerney, R, Martin, N and Clark, T (2014). PolyTB: A web-based resource designed to explore Mycobacterium tuberculosis complex (MTBC) genomic variation at a global scale. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. http://pathogenseq.lshtm.ac.uk/#tuberculosis

25 September 2014

Rehill, N, Armstrong, B and Wilkinson, P (2014). Data from: Clarifying life lost due to cold and heat: a new approach using annual time series. [Data Collection]. Dryad digital repository. https://doi.org/10.5061/dryad.02k83

2015

Gautham, M, Manish, S, Sanjay, G and Spicer, N (2015). IDEAS project - Private sector health data sharing study in West Bengal. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.112.

Bhattacharyya, S (2015). IDEAS project - Qualitative data for the Data Informed Platform for Health formative study in West Bengal. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.114.

Coll, F, Mcnerney, R, Preston, MD, Guerra-assunção, JA, Warry, A, Hill-Cawthorne, G, Mallard, K, Nair, M, Miranda, A, Alves, A, Perdigão, J, Viveiros, M, Portugal, I, Hasan, Z, Hasan, R, Glynn, J, Martin, N, Pain, A and Clark, T (2015). TB Profiler. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. http://tbdr.lshtm.ac.uk/

18 March 2015

Vehkala, M, Shubin, M, Connor, TR, Thomson, N and Corander, J (2015). Data from: Novel R pipeline for analyzing Biolog phenotypic microarray data. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.r98g7

Mobegi, V, Duffy, C, Amambua-Ngwa, A, Loua, KM, Laman, E, Nwakanma, DC, MacInnis, B, Aspeling-jones, H, Murray, L, Clark, T, Kwiatkowski, DP and Conway, D (2015). Genome-wide analysis of selection on the malaria parasite Plasmodium falciparum in West African populations of differing infection endemicity: Supplementary data. [Data Collection]. Molecular Biology and Evolution, Oxford Journals. https://doi.org/10.1093/molbev/msu106

26 March 2015

Benavente, E, Coll, F, Furnham, N, Mcnerney, R, Glynn, J, Campino, S, Pain, A, Mohareb, FR and Clark, T (2015). PhyloTrack. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.82.

31 March 2015

Messenger, L, Garcia, L, Vanhove, M, Huaranca, C, Bustamante, M, Torrico, M, Torrico, F, Miles, M and Llewellyn, M (2015). Data from: Ecological host fitting of Trypanosoma cruzi TcI in Bolivia: mosaic population structure, hybridization and a role for humans in Andean parasite dispersal. [Data Collection]. Dryad Digital Repository. https://doi.org/10.5061/dryad.b8465

5 May 2015

Gasparrini, A (2015). mvmeta: Multivariate and Univariate Meta-Analysis and Meta-Regression. [Data Collection]. Comprehensive R Archive Network. https://doi.org/10.17037/DATA.170.

June 2015

Clasen, T (2015). Evaluation of WaterAid sanitation in Odisha, India (Household Baseline) (June 2015). [Data Collection]. Research Gate. https://doi.org/10.13140/RG.2.1.1043.4726

1 June 2015

Jennings, S and McNicholl, R (2015). EPrints Geographic Location plugin. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.262.

23 June 2015

Grandjean, L, Gilman, RH, Martin, L, Soto, E, Castro, B, Lopez, S, Coronel, J, Castillo, E, Alarcon, V, Lopez, V, San Miguel, A, Quispe, N, Asencios, L, Dye, C and Moore, D (2015). Data from: Transmission of multidrug-resistant and drug-susceptible tuberculosis within households: a prospective cohort study. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.br760

28 July 2015

Binyaruka, P, Patouillard, E, Powell-jackson, T, Greco, G, Maestad, O and Borghi, J (2015). Effect of paying for performance on utilisation, quality, and user costs of health services in Tanzania: a controlled before and after study. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.21709

29 July 2015

Davey, C, Aiken, A, Hayes, R and Hargreaves, J (2015). Replication and re-analysis of a Kenyan stepped-wedge trial – Analysis files. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.8.

3 August 2015

Lawson, S and Murtagh, J (2015). LSHTM APCs 2015 (Jan-June). [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.1501032.

24 September 2015

Johnson, A (2015). National Survey of Sexual Attitudes and Lifestyles, 2010-2012. [Data Collection]. UK Data Service, Essex, United Kingdom. http://doi.org/10.5255/UKDA-SN-7799-2

22 October 2015

Chapman, LAC, Dyson, L, Courtenay, O, Chowdhury, R, Bern, C, Medley, G and Hollingsworth, TD (2015). Additional file 2: of Quantification of the natural history of visceral leishmaniasis and consequences for control. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.3610364_D1.v1

2016

Limburg, H, Meester, W, Kuper, H and Polack, S (2016). RAAB - Rapid Assessment of Avoidable Blindness. [Data Collection]. Community Eye Health Journal. https://www.cehjournal.org/resources/raab/

9 March 2016

Chotirmall, SH, Rothnie, K, Müllerová, H, Hurst, JR, Smeeth, L, Davis, K, Thomas, SL and Quint, J (2016). Validation of the Recording of Acute Exacerbations of COPD in UK Primary Care Electronic Healthcare Records. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0151357

21 April 2016

James, P, Sadler, K, Wondafrash, M, Argaw, A, Luo, H, Geleta, B, Kedir, K, Getnet, Y, Belachew, T and Bahwere, P (2016). Children with Moderate Acute Malnutrition with No Access to Supplementary Feeding Programmes Experience High Rates of Deterioration and No Improvement: Results from a Prospective Cohort Study in Rural Ethiopia. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0153530.s001

6 May 2016

Karat, AS, Omar, T, von Gottberg, A, Tlali, M, Chihota, VN, Churchyard, GJ, Fielding, KL, Johnson, S, Martinson, NA, McCarthy, K, Wolter, N, Wong, EB, Charalambous, S and Grant, AD (2016). Autopsy Prevalence of Tuberculosis and Other Potentially Treatable Infections among Adults with Advanced HIV Enrolled in Out-Patient Care in South Africa: Lesedi Kamoso study data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.122.

16 June 2016

Hidrobo, M, Peterman, A and Heise, L (2016). The Effect of Cash, Vouchers, and Food Transfers on Intimate Partner Violence: Evidence from a Randomized Experiment in Northern Ecuador. [Data Collection]. American Economic Association. https://doi.org/10.1257/app.20150048

15 September 2016

Rathod, SD, De Silva, MJ, Ssebunnya, J, Breuer, E, Murhar, V, Luitel, NP, Medhin, G, Kigozi, F, Shidhaye, R, Fekadu, A, Jordans, M, Patel, V, Tomlinson, M and Lund, C (2016). Treatment Contact Coverage for Probable Depressive and Probable Alcohol Use Disorders in Four Low- and Middle-Income Country Districts: The PRIME Cross-Sectional Community Surveys. Stata do file for baseline analysis. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0162038.s001

20 October 2016

Reid, A (2016). MESH subjects file for Eprints. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000267.

3 November 2016

Quartagno, M and Carpenter, J (2016). jomo: Multilevel Joint Modelling Multiple Imputation. [Data Collection]. The Comprehensive R Archive Network. https://cran.r-project.org/package=jomo

22 December 2016

Chen, F, Wang, S, Jiang, X, Ding, S, Lu, Y, Kim, J, Sahinalp, SC, Shimizu, C, Burns, JC, Wright, VJ, Png, E, Hibberd, ML, Lloyd, DD, Yang, H, Telenti, A, Bloss, CS, Fox, D, Lauter, K and Ohno-Machado, L (2016). PRINCESS: Privacy-protecting Rare disease International Network Collaboration via Encryption through Software guard extensionS. [Data Collection]. Bioinformatics. https://doi.org/10.1093/bioinformatics/btw758

January 2017

Gasparrini, A, Scheipl, F, Armstrong, B and Kenward, M (2017). R code and data for: "A penalized framework for distributed lag non-linear models". [Data Collection]. Github. https://github.com/gasparrini/2017_gasparrini_Biomet_Rcodedata

15 January 2017

Armstrong, BG, Gasparrini, A and Tobias, A (2017). R and STATA code for: "Conditional Poisson models: a flexible alternative to conditional logistic case cross-over analysis". [Data Collection]. Github. https://github.com/gasparrini/2014_armstrong_BMCmrm_Codedata

Vicedo-cabrera, AM, Forsberg, B, Tobias, A, Zanobetti, A, Schwartz, J, Armstrong, B and Gasparrini, A (2017). R code and data for: "Associations of Inter- and Intraday Temperature Change With Mortality". [Data Collection]. Github. https://github.com/gasparrini/2016_vicedo-cabrera_AJE_Rcodedata

Gasparrini, A, Armstrong, B and Kenward, MG (2017). R code for: "Distributed lag non-linear models". [Data Collection]. Github. https://github.com/gasparrini/2010_gasparrini_StatMed_Rcode

Gasparrini, A (2017). R code for: "Modeling exposure–lag–response associations with distributed lag non-linear models". [Data Collection]. Github. https://github.com/gasparrini/2014_gasparrini_StatMed_Rcodedata

Gasparrini, A and Armstrong, B (2017). R code for: "The impact of heat waves on mortality". [Data Collection]. Github. https://github.com/gasparrini/2011_gasparrini_Epidem_Rcode

Bhaskaran, K, Gasparrini, A, Hajat, S, Smeeth, L and Armstrong, B (2017). R code, Stata code and data for: "Time series regression studies in environmental epidemiology". [Data Collection]. Github. https://github.com/gasparrini/2013_bhaskaran_IJE_Codedata

Gasparrini, A (2017). Tutorial code for "Distributed Lag Linear and Non-Linear Models in R: The Package dlnm". [Data Collection]. Github. https://github.com/gasparrini/2011_gasparrini_JSS_Rcode

16 January 2017

Gasparrini, A, Armstrong, B and Scheipl, F (2017). dlnm: Distributed Lag Non-Linear Models. [Data Collection]. The Comprehensive R Archive Network. https://CRAN.R-project.org/package=dlnm

25 January 2017

Gasparrini, A and Leone, M (2017). gasparrini/2014_gasparrini_BMCmrm_Rcodedata. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://github.com/gasparrini/2014_gasparrini_BMCmrm_Rcodedata

6 February 2017

Jacob, PE, Lee, A, Murray, L and Funk, S (2017). rbi: R Interface to LibBi. [Data Collection]. The Comprehensive R Archive Network. https://cran.r-project.org/package=rbi

14 February 2017

Judah, G, de Witt Huberts, J, Drassal, A and Aunger, R (2017). The development and validation of a Real Time Location System to reliably monitor everyday activities in natural contexts. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0171610

14 March 2017

Luque, MA, Maringe, C and Nelson, P (2017). CVAUROC: Stata module to compute Cross-validated Area Under the Curve for ROC Analysis after Predictive Modelling for Binary Outcomes. [Data Collection]. EconPapers. http://econpapers.repec.org/RePEc:boc:bocode:s458324

3 June 2017

Bartlett, J and Keogh, R (2017). smcfcs: Multiple Imputation of Covariates by Substantive Model Compatible Fully Conditional Specification. [Data Collection]. The Comprehensive R Archive Network. https://cran.r-project.org/package=smcfcs

20 June 2017

Kabudula, C and Rentsch, C (2017). Point-of-contact Interactive Record Linkage (PIRL). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.998867

22 September 2017

Roberts, C (2017). Open Data Kit PDF Report Creator. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://github.com/chrissyhroberts/ODK_PDF_Reports

5 October 2017

Roberts, C (2017). FPC Grader. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.1116798

8 October 2017

Fernandez, MAL (2017). CMATCH: Stata module to tabulate matched pairs in 1:1 case control study by exposure status. [Data Collection]. EconPapers. https://econpapers.repec.org/RePEc:boc:bocode:s458408

14 November 2017

Mccreesh, N (2017). Model code for "An explanation for the low proportion of tuberculosis that results from transmission between household and known social contacts". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.283.

5 December 2017

Gasparrini, A, Armstrong, B and Kenward, MG (2017). R code and data for: "Multivariate meta-analysis for non-linear and other multi-parameter associations". [Data Collection]. Github. https://github.com/gasparrini/2012_gasparrini_StatMed_Rcodedata

Gasparrini, A and Armstrong, B (2017). R code and data for: "Reducing and meta-analysing estimates from distributed lag non-linear models". [Data Collection]. Github. https://github.com/gasparrini/2013_gasparrini_BMCmrm_Rcodedata

Gasparrini, A, Guo, Y, Hashizume, M, Kinney, PL, Petkova, EP, Lavigne, E, Zanobetti, A, Schwartz, JD, Tobias, A, Leone, M, Tong, S, Honda, Y, Kim, H and Armstrong, BG (2017). R code and data for: "Temporal Variation in Heat–Mortality Associations: A Multicountry Study". [Data Collection]. Github. https://github.com/gasparrini/2015_gasparrini_EHP_Rcodedata

2018

LSHTM Library & Archives Service (2018). LSHTM Data Management Plan for Research Students. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/PUBS.03750331

LSHTM Library & Archives Service (2018). LSHTM Data Management Plan for research projects. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/PUBS.03716765

Fung Lee, S, Ng, TY, Wong, FCS and Fernandez, MAL (2018). migariane/CER_SEER_FL_RTvsCH: Cancer Survival Outcome among Stage I follicular Lymphoma Cancer Patients Treated with Monotherapy: Radiotherapy versus Systemic Treatment. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.2560764

15 January 2018

Funk, S (2018). Socialmixr: Social Mixing Matrices for Infectious Disease Modelling. [Data Collection]. The Comprehensive R Archive Network. https://CRAN.R-project.org/package=socialmixr https://github.com/sbfnk/socialmixr

1 February 2018

LSHTM Library & Archives service (2018). LSHTM Research Data Management Policy. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/PUBS.00612422

5 March 2018

Wilkinson, S, Douglas, IJ, Stirnadel-Farrant, H, Smeeth, L and Tomlinson, LA (2018). Type 2 Diabetes drug codelist. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.281.

22 March 2018

Knight, G (2018). Code for "The relative fitness of drug resistant Mycobacterium tuberculosis: a modelling study of household transmission in Lima, Peru". [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.1205418

Trias-Llimós, S, Martikainen, P, Mäkelä, P and Janssen, F (2018). Comparison of different approaches for estimating age-specific alcohol-attributable mortality: The cases of France and Finland. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0194478.s005

10 April 2018

Roberts, C (2018). ELISA Plate Washer. [Data Collection]. Thingiverse. https://www.thingiverse.com/thing:2856117

14 May 2018

Jombart, T, Kendall, M, Almagro-Garcia, J and Colijn, C (2018). treespace: exploration of landscapes of phylogenetic trees. [Data Collection]. Github. https://thibautjombart.github.io/treespace/

13 June 2018

Jasseh, M, D'Alessandro, U and Dondeh, BL (2018). Farafenni INDEPTH Core Dataset 1982-2015 (Release 2018). [Data Collection]. INDEPTH Network. http://doi.org/10.7796/INDEPTH.GM011.CMD2015.v2

18 June 2018

Keogh, R (2018). MI-CC. [Data Collection]. Github. https://github.com/ruthkeogh/MI-CC

28 June 2018

Leurent, B, Gomes, M, Faria, R, Morris, S, Grieve, R and Carpenter, JR (2018). Sensitivity analysis for missing data in cost-effectiveness analysis: Stata code. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.6714206.v1

20 August 2018

Walker, T (2018). Novel Wolbachia strains in Anopheles malaria vectors from Sub-Saharan Africa. [Data Collection]. Open Science Framework. https://doi.org/10.17605/OSF.IO/MW6XZ

11 September 2018

Sabot, K (2018). IDEAS project - Professional advice network study in Ethiopia. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000821.

17 September 2018

Keogh, R (2018). ruthkeogh/landmark_CF. [Data Collection]. Github. https://github.com/ruthkeogh/landmark_CF

21 September 2018

MacPherson, P, Khundi, M, Nliwasa, M, Choko, AT, Phiri, VK, Webb, EL, Dodd, PJ, Cohen, T, Harris, R and Corbett, EL (2018). BlantyreTBEpi. [Data Collection]. Github. https://github.com/petermacp/BlantyreTBEpi

1 October 2018

Herbst, K, Pillay, D, Baisley, K, Barnighausen, T and Koole, O (2018). DREAMS baseline study in young men aged 20-29 years in rural KwaZulu Natal, South Africa, 2006-2015. [Data Collection]. INDEPTH Network. https://doi.org/10.7796/AHRI.DREAMS.DREAMS.Male.Baseline.2018.v1

20 October 2018

Masselot, P (2018). PierreMasselot/Paper--2018--Aggregated_response_in_regression. [Data Collection]. Github. https://github.com/PierreMasselot/Paper--2018--Aggregated_response_in_regression

23 November 2018

Brady, OJ (2018). obrady/Brazil_microcepahly_analysis_public. [Data Collection]. Github. https://github.com/obrady/Brazil_microcepahly_analysis_public

29 November 2018

Day, LT, Ruysen, H, Gordeev, VS, Gore-langton, GR, Boggs, D, Cousens, S, Moxon, SG, Blencowe, H, Baschieri, A, Rahman, AE, Tahsina, T, Zaman, SB, Hossain, T, Rahman, QS, Ameen, S, Arifeen, SE, KC, A, Shrestha, SK, KC, NP, Singh, D, Jha, AK, Jha, B, Rana, N, Basnet, O, Joshi, E, Paudel, A, Shrestha, PR, Jha, D, Bastola, RC, Ghimire, JJ, Paudel, R, Salim, N, Shamba, D, Manji, K, Shabani, J, Shirima, K, Mkopi, N, Mrisho, M, Manzi, F, Jaribu, J, Kija, E, Assenga, E, Kisenge, R, Pembe, A, Hanson, C, Mbaruku, G, Masanja, H and Lawn, JE (2018). EN-BIRTH Data Collection Tools. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000951.

Day, LT, Ruysen, H, Gordeev, VS, Gore-langton, GR, Boggs, D, Cousens, S, Moxon, SG, Blencowe, H, Baschieri, A, Rahman, AE, Tahsina, T, Zaman, SB, Hossain, T, Rahman, QS, Ameen, S, Arifeen, SE, KC, A, Shrestha, SK, KC, NP, Singh, D, Jha, AK, Jha, B, Rana, N, Basnet, O, Joshi, E, Paudel, A, Shrestha, PR, Jha, D, Bastola, RC, Ghimire, JJ, Paudel, R, Salim, N, Shamba, D, Manji, K, Shabani, J, Shirima, K, Mkopi, N, Mrisho, M, Manzi, F, Jaribu, J, Kija, E, Assenga, E, Kisenge, R, Pembe, A, Hanson, C, Mbaruku, G, Masanja, H and Lawn, JE (2018). EN-BIRTH Data Collector Training - Handbook and Manual. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000952.

Day, LT, Ruysen, H, Gordeev, VS, Gore-langton, GR, Boggs, D, Cousens, S, Moxon, S, Blencowe, H, Baschieri, A, Rahman, AE, Tahsina, T, Zaman, SB, Hossain, T, Rahman, QS, Ameen, S, Arifeen, SE, KC, A, Shrestha, SK, KC, NP, Singh, D, Jha, AK, Jha, B, Rana, N, Basnet, O, Joshi, E, Paudel, A, Shrestha, PR, Jha, D, Bastola, RC, Ghimire, JJ, Paudel, R, Salim, N, Shamba, D, Manji, K, Shabani, J, Shirima, K, Mkopi, N, Mrisho, M, Manzi, F, Jaribu, J, Kija, E, Assenga, E, Kisenge, R, Pembe, A, Hanson, C, Mbaruku, G, Masanja, H and Lawn, JE (2018). EN-BIRTH Data Collector Training - Supporting Annexes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000953.

Day, LT, Ruysen, H, Gordeev, VS, Gore-langton, GR, Boggs, D, Cousens, S, Moxon, SG, Blencowe, H, Baschieri, A, Rahman, AE, Tahsina, T, Zaman, SB, Hossain, T, Rahman, QS, Ameen, S, Arifeen, SE, KC, A, Shrestha, SK, KC, NP, Singh, D, Jha, AK, Jha, B, Rana, N, Basnet, O, Joshi, E, Paudel, A, Shrestha, PR, Jha, D, Bastola, RC, Ghimire, JJ, Paudel, R, Salim, N, Shamba, D, Manji, K, Shabani, J, Shirima, K, Mkopi, N, Mrisho, M, Manzi, F, Jaribu, J, Kija, E, Assenga, E, Kisenge, R, Pembe, A, Hanson, C, Mbaruku, G, Masanja, H and Lawn, JE (2018). EN-BIRTH Data Collector Training – Training Module material. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000954.

Kucharski, A (2018). scrapR. [Data Collection]. Github. https://github.com/adamkucharski/scrapR/

30 November 2018

Jombart, T, Campbell, F and Fitzjohn, R (2018). outbreaker2: Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data. [Data Collection]. The Comprehensive R Archive Network. https://CRAN.R-project.org/package=outbreaker2

11 December 2018

Chandna, A, White, L, Pongvongsa, T, Mayxay, M, Newton, P, Day, N and Lubell, Y (2018). YLubell/SEA-CTN: surveillance-poct. [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.2206940

19 December 2018

Yip, JLY, Bright, T, Ford, S, Mathenge, W and Faal, H (2018). Data from: Process evaluation of a national primary eye care programme in Rwanda. [Data Collection]. Dryad Digital Repository. https://doi.org/10.5061/dryad.2pb2f1k

2019

Dyble, M, Thorley, J, Page, AE, Smith, D and Migliano, AB (2019). Engagement in agricultural work is associated with reduced leisure time among Agta hunter-gatherers. [Data Collection]. Nature Human Behaviour. https://doi.org/10.1038/s41562-019-0614-6

Dianati, K, Zimmermann, N, Milner, J, Muindi, K, Ezeh, A, Chege, M, Mberu, B, Kyobutungi, C, Fletcher, H, Wilkinson, P and Davies, M (2019). Household air pollution in Nairobi's slums: A long-term policy evaluation using participatory system dynamics. [Data Collection]. BMC Medicine. https://doi.org/10.1186/s12916-019-1260-6

4 January 2019

Kafetzopoulou, LE, Pullan, ST, Lemey, P, Suchard, MA, Ehichioya, DU, Pahlmann, M, Thielebein, A, Hinzmann, J, Oestereich, L, Wozniak, DM, Efthymiadis, K, Schachten, D, Koenig, F, Matjeschk, J, Lorenzen, S, Lumley, S, Ighodalo, Y, Adomeh, DI, Olokor, T, Omomoh, E, Omiunu, R, Agbukor, J, Ebo, B, Aiyepada, J, Ebhodaghe, P, Osiemi, B, Ehikhametalor, S, Akhilomen, P, Airende, M, Esumeh, R, Muoebonam, E, Giwa, R, Ekanem, A, Igenegbale, G, Odigie, G, Okonofua, G, Enigbe, R, Oyakhilome, J, Yerumoh, EO, Odia, I, Aire, C, Okonofua, M, Atafo, R, Tobin, E, Asogun, D, Akpede, N, Okokhere, PO, Rafiu, MO, Iraoyah, KO, Iruolagbe, CO, Akhideno, P, Erameh, C, Akpede, G, Isibor, E, Naidoo, D, Hewson, R, Hiscox, JA, Vipond, R, Carroll, MW, Ihekweazu, C, Formenty, P, Okogbenin, S, Ogbaini-Emovon, E, Günther, S and Duraffour, S (2019). Metagenomic sequencing at the epicenter of the Nigeria 2018 Lassa fever outbreak. [Data Collection]. SCIENCE. https://doi.org/10.1126/science.aau9343

5 January 2019

Xiang, F and Frost, S (2019). xiangfstats/GenieR: A final release. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.5281/zenodo.2532305

21 January 2019

Masselot, P (2019). PierreMasselot/hhws. [Data Collection]. Github. https://github.com/PierreMasselot/hhws

4 February 2019

Mistry, MN (2019). A High-Resolution (0.25 degree) Historical Global Gridded Dataset of Climate Extreme Indices (1970-2016) using GLDAS data. [Data Collection]. PANGAEA. https://doi.org/10.1594/PANGAEA.898014

9 February 2019

Fernandez, MAL, Schomaker, M, Redondo-Sanchez, D, Perez, MJS, Vaidya, A and Schnitzer, ME (2019). migariane/ColliderApp: ColliderAppLuque. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.2560807

Fernandez, MAL (2019). migariane/EASP_NET_SURV: Tutorial Net Survival. [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.2560811

12 February 2019

Fernandez, MAL, Thomas, A, Gelaye, B, Racape, J, Sanchez-Perez, MJ and Williams, MA (2019). migariane/Stillbirth: Analysis Stillbirth risk by SES in Spain. [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.2562363

25 February 2019

Sear, R, Sheppard, P and Coall, DA (2019). Supplementary Table 1 from Cross-cultural evidence does not support universal acceleration of puberty in father-absent households. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.7756952.v1

3 March 2019

Chatzilena, A and Van Leeuwen, E (2019). anastasiachtz/COMMAND_stan/. [Data Collection]. Github. https://github.com/anastasiachtz/COMMAND_stan/

14 March 2019

Fernandez, MAL and Redondo, D (2019). migariane/HETMOR-Causal-Inference: Effect Modification and Collapsibility in Evaluations of Public Health Interventions. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.2560819

Fernandez, MAL (2019). migariane/cvAUROC: Cross-validated AUC for Stata users. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.2560816

24 April 2019

Sabherwal, S (2019). extended data for protocol. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.7503887.v4

8 May 2019

Smith, R (2019). An experimental investigation of social preferences, their determinants and their role in the labour supply function. [Data Collection]. UK Data Service, Essex, United Kingdom. https://doi.org/10.5255/UKDA-SN-850566

22 May 2019

Leurent, B, Gomes, M, Cro, S, Wiles, N and Carpenter, JR (2019). CEmimix Stata do-file - First version. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.8168021.v1

30 May 2019

Cerna-turoff, I, Fischer, H, Mayhew, S and Devries, K (2019). Violence against children and natural disasters: A systematic review and meta-analysis of quantitative evidence. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0217719

13 June 2019

Masselot, P (2019). PierreMasselot/Paper--2019--Air-pollution-warning-system. [Data Collection]. Github. https://github.com/PierreMasselot/Paper--2019--Air-pollution-warning-system

21 June 2019

Roberts, C and LSHTM Global Health Analytics Group (2019). LSHTM-ORK/OBD. [Data Collection]. Github. https://github.com/LSHTM-ORK/OBD

29 June 2019

Thompson, J (2019). SWPERMUTE: Stata module to compute Permutation tests for Stepped-Wedge Cluster-Randomised Trials. [Data Collection]. Statistical Software Components S458426, Boston College Department of Economics. https://ideas.repec.org/c/boc/bocode/s458426.html

12 July 2019

Cori, A, Kamvar, ZN, Stockwin, J, Jombart, T, Thompson, R and Dahlqwist, E (2019). mrc-ide/EpiEstim: 2.2-3. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3333653

29 July 2019

Stockwin, J, Thompson, R, Cori, A, Jombart, T, Kamvar, ZN and FitzJohn, R (2019). jstockwin/EpiEstimApp: v1.0.0. [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.3275999

8 August 2019

Abbott, S (2019). seabbs/ModelTBBCGEngland. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3360668

9 August 2019

Kwizera, R, Cresswell, FV, Mugumya, G, Okirwoth, M, Kagimu, E, Bangdiwala, AS, Williams, DA, Rhein, J, Boulware, DR and Meya, DB (2019). CSFLAM_data set revised. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.9415853.v1

13 September 2019

Lytras, T, Gasparrini, A and Wang, S (2019). FluMoDL: Influenza-Attributable Mortality with Distributed-Lag Models. [Data Collection]. The Comprehensive R Archive Network. https://cran.r-project.org/package=FluMoDL

16 September 2019

Knight, G (2019). gwenknight/empiricprescribing. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3418998

26 September 2019

Abbott, S (2019). seabbs/EstZoonoticTB. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3462381

7 October 2019

Gasparrini, A (2019). gasparrini/2019_armstrong_EHP_Rcodedata. [Data Collection]. Github. https://github.com/gasparrini/2019_armstrong_EHP_Rcodedata

25 October 2019

Funk, S (2019). sbfnk/epimixr. [Data Collection]. Github. https://github.com/sbfnk/epimixr

28 November 2019

Abbott, S (2019). seabbs/SpeedyMarkov. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3556670

29 November 2019

Timaeus, I (2019). convertCMC: Convert century month codes to Stata dates. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3557306

12 December 2019

Pearson, C, Abbas, KM, Clifford, S, Flasche, S and Hladish, TJ (2019). denvax: Simple Dengue Test and Vaccinate Cost Thresholds. [Data Collection]. The Comprehensive R Archive Network. https://cran.r-project.org/web/packages/denvax/index.html

19 December 2019

Brady, OJ and Bastos, L (2019). Code for simulating release of Wolbachia mosquitoes in Indonesia and assessing their cost effectiveness in different places over time. [Data Collection]. Github. https://github.com/obrady/Wolbachia_CE/

Brady, OJ and Bastos, L (2019). obrady/Wolbachia_CE. [Data Collection]. Github. https://github.com/obrady/Wolbachia_CE/

29 January 2020

Lawn, JE, Waiswa, P, Waiswa, JA, Kwesiga, D, Blencowe, H, Baschieri, A, Gordeev, VS and EN-INDEPTH Collaborator Group (2020). Every Newborn INDEPTH (EN-INDEPTH) Study - Additional Materials. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001556.

5 February 2020

Roberts, C (2020). Microscope Smartphone Adapter (Customisable). [Data Collection]. Thingiverse. https://www.thingiverse.com/thing:4145621

7 February 2020

Roberts, C (2020). Female Reproductive System. [Data Collection]. Thingiverse. https://www.thingiverse.com/thing:4149401

11 February 2020

von Wissmann, B, Gadama, L, Dube, Q, Membe-Gadama, G, Stock, S, Chodzaza, E, Masesa, C, Crampin, AC and Wood, R (2020). The DIPLOMATIC Collaboration, Work Package2_Coredata Set. [Data Collection]. OSF. https://osf.io/d3s7j/

12 February 2020

Willem, L, Xiao, L, Antillon, M, Bilcke, J, Jit, M and Beutels, P (2020). Multi-Country Model Application for RSV Cost-Effectiveness Policy (McMarcel). [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.3663447

19 February 2020

Hellewell, J (2020). cmmid/ringbp. [Data Collection]. Github. https://github.com/cmmid/ringbp

20 February 2020

Riffe, T and Aburto, JM (2020). timriffe/MacroShape. [Data Collection]. Github. https://github.com/timriffe/MacroShape

6 April 2020

Endo, A, Abbott, S, Kucharski, AJ and Funk, S (2020). akira-endo/COVID19_clustersize: Estimating the amount of superspreading using outbreak sizes of COVID-19 outside China. [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.3741744

17 April 2020

Tomlinson, LA, Iwagami, M, Bidulka, P and Wong, AY (2020). Supplementary data for “Comparisons of Staphylococcus aureus infection and other outcomes between users of angiotensin-converting-enzyme inhibitors and angiotensin II receptor blockers: lessons for COVID-19 from a nationwide cohort study”. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/PUBS.04656578.

22 April 2020

Shaver, J, Power, EA, Purzycki, BG, Shenk, MK, Bulbulia, JA, Sear, R, Sosis, R and Watts, J (2020). Religion, Cooperation, Fertility, and Child Outcomes. [Data Collection]. OSF. https://osf.io/4mt9y/

18 May 2020

Alwy Al-beity, F, Pembe, AB, Marrone, G, Baker, U and Hanson, C (2020). Anonymised data for: "Predictors of change of health workers’ knowledge and skills after the Helping Mothers Survive Bleeding after Birth (HMS BAB) in-facility training in Tanzania". [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0232983.s006

20 May 2020

Jombart, T, Kamvar, ZN, Collins, C, Luštrik, R, Beugin, M, Knaus, BJ, Solymos, P, Mikryukov, V, Schliep, K, Maié, T, Morkovsky, L, Ahmed, I, Cori, A, Calboli, F, Ewing, R, Michaud, F, DeCamp, R and Courtiol, A (2020). adegenet: Exploratory Analysis of Genetic and Genomic Data. [Data Collection]. The Comprehensive R Archive Network. https://cran.r-project.org/web/packages/adegenet/

3 June 2020

Mansfield, KE, Nitsch, D, Smeeth, L, Iwagami, M, Johnston, R and Tomlinson, LA (2020). ISAC Protocol 17_197R: The effect of renin-angiotensin system inhibitors on haemoglobin. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/PUBS.04656899

11 June 2020

Walker, T, Jeffries, CL, Yakob, L, White, M and Wilson, L (2020). Detection of a novel insect-specific flavivirus across ecologically diverse populations of Aedes aegypti on the Caribbean Island of Saint Lucia. [Data Collection]. Open Science Framework. https://doi.org/10.17605/OSF.IO/8UYB7

Abbott, S and Endo, A (2020). idmodelr: Infectious Disease Model Library and Utilities. [Data Collection]. The Comprehensive R Archive Network. https://cran.r-project.org/package=idmodelr

Abbott, S, Bekker-Nielsen Dunbar, M and Smith, A (2020). seabbs/getTBinR. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.2547405

17 June 2020

Roberts, C and LSHTM Global Health Analytics Group (2020). LSHTM-ORK/EDK_Automation_Tools. [Data Collection]. Github. https://github.com/LSHTM-ORK/EDK_Automation_Tools

Funk, S and Finger, F (2020). sbfnk/rbi.helpers. [Data Collection]. Github. https://github.com/sbfnk/rbi.helpers

25 June 2020

Koltai, M (2020). sysbio-curie/exact-stoch-log-mod. [Data Collection]. GitHub. https://github.com/sysbio-curie/exact-stoch-log-mod

2 July 2020

Roberts, C and LSHTM Global Health Analytics Group (2020). LSHTM-ORK/OpenMakingKit. [Data Collection]. Github. https://github.com/LSHTM-ORK/OpenMakingKit/

10 August 2020

Sumner, T (2020). tomsumner/Latency_Model_Comparison_Public. [Data Collection]. Github. https://github.com/tomsumner/Latency_Model_Comparison_Public

28 August 2020

Lazo-Porras, M, Bernabe-Ortiz, A, Taype-Rondan, A, Gilman, RH, Malaga, G, Manrique, H, Neyra, L, Calderon, J, Pinto, M, Armstrong, DG, Montori, VM and Miranda, JJ (2020). Data for: "Foot thermometry with mHeath-based supplementation to prevent diabetic foot ulcers: A randomized controlled trial". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002334.

11 September 2020

Lopez-Bernal, J, Cummins, S and Gasparrini, A (2020). gasparrini/2017_lopezbernal_IJE_codedata. [Data Collection]. GitHub. http://www.ag-myresearch.com/2017_lopezbernal_ije.html

24 September 2020

Nash, S, Thompson, J and Leurent, B (2020). CLAN: Stata module to perform cluster-level analysis of cluster randomised trials. [Data Collection]. Statistical Software Components S458844, Boston College Department of Economics. https://ideas.repec.org/c/boc/bocode/s458844.html

25 September 2020

Thompson, J (2020). Comparison of small-sample standard-error corrections for generalised estimating equations in stepped wedge cluster randomised trials with a binary outcome: A simulation study. [Data Collection]. Zenodo. https://zenodo.org/10.5281/zenodo.4049828

1 October 2020

Endo, A and Kucharski, AJ (2020). akira-endo/COVID19_backwardtracing. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4050267

6 October 2020

Lazarus, JV, Ratzan, S, Palayew, A, Billari, FC, Binagwaho, A, Kimball, S, Larson, HJ, Melegaro, A, Rabin, K, White, TM and El-Mohandes, A (2020). COVID-SCORE: A global survey to assess public perceptions of government responses to COVID-19 (COVID-SCORE-10). [Data Collection]. PLoS One. https://doi.org/10.1371/journal.pone.0240011

9 November 2020

Holt, KE, Lam, M and Wick, R (2020). Kleborate v2.0.0. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4923014

20 November 2020

Stubbs, S (2020). Crimean-congo haemorrhagic fever virus detected in Rhipicephalus ticks feeding on cattle in an abattoir, Uganda. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4282998

25 November 2020

Masselot, P (2020). PierreMasselot/Sedimentation_analysis. [Data Collection]. Github. https://github.com/PierreMasselot/Sedimentation_analysis

27 November 2020

Tazare, J (2020). johntaz/COVID-Collateral. [Data Collection]. Github. https://github.com/johntaz/COVID-Collateral

30 November 2020

Colbourn, T, Waites, W, Manheim, D, Sturniolo, S, Kerr, CC, Panovska-Griffiths, J and Colbourn, G (2020). ptti/ptti: Modelling the health and economic impacts of different testing and tracing strategies for COVID-19 in the UK. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4298798

11 December 2020

Robert, A, Funk, S and Kucharski, AJ (2020). o2geosocial. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4317439

2021

Jaquiery, M and Schultze, A (2021). ReproducibiliTea LSHTM. [Data Collection]. OSF. https://osf.io/t27pc/

Gregson, J and Collier, T (2021). WINRATIOTEST: Stata module to calculate the unmatched Win Ratio for prioritised outcomes. [Data Collection]. Statistical Software Components, Boston College Department of Economics. https://ideas.repec.org/c/boc/bocode/s458984.html

7 January 2021

Ling, S (2021). supingling/glycaemic-control. [Data Collection]. Github. https://github.com/supingling/glycaemic-control

8 January 2021

Oliphant, NP, Ray, N, Bensaid, K, Ouedraogo, A, Gali, AY, Habi, O, Maazou, I, Panciera, R, Muñiz, M, Manda, SO, Sy, Z, Jackson, D and Doherty, T (2021). Supplementary Appendix 1b of "Optimizing geographical accessibility to primary health care at community level in Niger: a geospatial analysis". [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4428176

14 January 2021

Pearson, CAB, Russell, TW and Kucharski, AJ (2021). cmmid/SA2UK. [Data Collection]. Github. https://github.com/cmmid/SA2UK

26 January 2021

Timaeus, I (2021). BugBunny/Pathways_to_Low_Fertility. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3627832

February 2021

Abbott, S and Fyles, M (2021). martyn1fyles/HouseholdContactTracing. [Data Collection]. Github. https://github.com/martyn1fyles/HouseholdContactTracing

5 February 2021

Masselot, P (2021). PierreMasselot/primr. [Data Collection]. Github. https://github.com/PierreMasselot/primr

10 March 2021

Colón-González, FJ, Sewe, MO, Tompkins, AM, Sjödin, H, Casallas, A, Rocklöv, J, Caminade, C and Lowe, R (2021). Projecting the risk of mosquito-borne diseases in a warmer and more urbanised world: a multi-model multi-scenario intercomparison study. [Data Collection]. OSF. https://doi.org/10.17605/OSF.IO/HPAEY

17 March 2021

Holt, KE, Hawkey, J and Paranagama, K (2021). katholt/sonneityping: v20210201. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4609812

19 March 2021

Limbada, M, Ayles, H and Macleod, D (2021). A Comparison of Different Community Models of ART Delivery Amongst Stable HIV+ Patients in two Urban Settings in Zambia - Study Protocol. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002116.

LSHTM Library & Archives Service (2021). LSHTM Data Compass Procedures. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000002.

25 March 2021

Leurent, B and Cro, S (2021). CEmimix ADO file. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14308286.v2

29 March 2021

Muzambi, R, Bhaskaran, K, Brayne, C, Chaturvedi, N, Smeeth, L and Warren-Gash, C (2021). ISAC Protocol 19_129 - Common infections and incident dementia: a historical cohort study using UK primary and secondary care data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002134.

Mendelsohn, SC, Fiore-Gartland, A, Penn-Nicholson, A, Mulenga, H, Kimbung, S, Borate, B, Hadley, K, Hikuam, C, Musvosvi, M, Bilek, N, Erasmus, M, Jaxa, L, Raphela, R, Nombida, O, Kaskar, M, Sumner, T, White, RG, Innes, C, Brumskine, W, Hiemstra, A, Malherbe, ST, Hassan-Moosa, R, Tameris, M, Walzl, G, Naidoo, K, Churchyard, G, Scriba, TJ and Hatherill, M (2021). Validation of Correlates of Risk of TB Disease in High Risk Populations (CORTIS-HR) Study: Public, subject-level RISK11 signature scores and metadata. [Data Collection]. University of Cape Town. https://doi.org/10.25375/uct.14176484.v1

30 March 2021

McCreesh, N (2021). NickyMcC/WithinClinics. [Data Collection]. Github. https://github.com/NickyMcC/WithinClinics

1 April 2021

Kelly-Hope, LA, Sanders, AM, Harding-Esch, E, Willems, J, Ahmed, F, Vincer, F and Hill, R (2021). Additional file 2 of Complex emergencies and the control and elimination of neglected tropical diseases in Africa: developing a practical approach for implementing safe and effective mapping and intervention strategies. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14355436.v1

12 April 2021

Suffel, AM (2021). Eyedeet/Systematic_review. [Data Collection]. Github. https://github.com/Eyedeet/Systematic_review/tree/main

13 April 2021

Umemneku Chikere, CM, Wilson, KJ, Allen, AJ and Vale, L (2021). Additional file 2 of Comparative diagnostic accuracy studies with an imperfect reference standard – a comparison of correction methods. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14404144.v1

27 April 2021

Lewer, D, Padmanathan, P, Arfeen, MNU, Denaxas, S, Forbes, H, Gonzalez-Izquierdo, A and Hickman, M (2021). Healthcare use by people who use illicit opioids (HUPIO): development of a cohort based on electronic primary care records in England (extended data). [Data Collection]. University College London, London, United Kingdom. https://doi.org/10.5522/04/13253906.v5

30 April 2021

Tazare, J (2021). johntaz/HDPS-Diagnostics. [Data Collection]. Github. https://github.com/johntaz/HDPS-Diagnostics/tree/master/code

5 May 2021

Banterle, M, Zhao, Z, Bottolo, L, Richardson, S, Leoncio, W, Lewin, A, Zucknick, M and Zhao, Z (2021). BayesSUR: Bayesian Seemingly Unrelated Regression. [Data Collection]. The Comprehensive R Archive Network. https://cran.r-project.org/package=BayesSUR

Lindsay, S, Carrasco-Tenezaca, M, Jawara, M, Bradley, J, D'Alessandro, U, Jeffries, D, Pinder, M and Knudsen, J (2021). Supplementary data files & video for Carrasco-Tenezaca published in the Journal of the Royal Society Interface, 'The relationship between house height and mosquito house entry: an experimental study in rural Gambia. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14483475.v1

24 May 2021

Shakur-Still, H, Arribas, M, Roberts, I, Chaudhri, R, Geer, A, Prowse, D, Lubeya, MK, Kayani, A, Javaid, K and Grassin Delyle, S (2021). WOMAN-PharmacoTXA Trial: Pharmacokinetics and pharmacodynamics of tranexamic acid in women having caesarean section birth - Extended data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002164.

5 June 2021

Tazare, J (2021). johntaz/HDPS-Stata-Demo. [Data Collection]. Github. https://github.com/johntaz/HDPS-Stata-Demo/

6 June 2021

Tackney, MS, Cook, DG, Stahl, D, Ismail, K, Williamson, E and Carpenter, J (2021). Additional file 1 of A framework for handling missing accelerometer outcome data in trials. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14738652.v1

7 June 2021

Gimma, A, Wong, KL, Van Xandvoort, K, Jarvis, CI and Edmunds, WJ (2021). CoMix social contact data (UK). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4905745

16 June 2021

Masselot, P (2021). PierreMasselot/emdr. [Data Collection]. Github. https://github.com/PierreMasselot/emdr

Dodds, C, Keogh, P, Bourne, A, McDaid, L, Squire, C, Weatherburn, P and Young, I (2021). Supplemental material for: The Long and Winding Road: Archiving and Re-Using Qualitative Data from 12 Research Projects Spanning 16 Years. [Data Collection]. SAGE Journals. https://doi.org/10.25384/SAGE.12489428.v1

20 June 2021

Inouye, M, Dashnow, H, Pope, B, Wick, R and Holt, KE (2021). katholt/srst2. [Data Collection]. Github. https://github.com/katholt/srst2

21 June 2021

Liu, Y, Sandmann, FG, Barnard, RC, Pearson, CA, CMMID Working-19 Working Group, Pastore, R, Pebody, R, Flasche, S and Jit, M (2021). Optimising health and economic impacts of COVID-19 vaccine rollout strategies in the WHO European Region. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4964148

9 July 2021

Courtin, E, Greener, R, Weiss, J, Ware, EB, Dowd, JB and Rehkopf, D (2021). Analysis for: The changing relationship between genetic risk and cognitive decline across birth cohorts. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4982053

10 July 2021

Charvat, H and Belot, A (2021). mexhaz: Mixed Effect Excess Hazard Models. [Data Collection]. The Comprehensive R Archive Network. https://cran.r-project.org/package=mexhaz

15 July 2021

Davies, NG (2021). CSV-format data for: Increased mortality in community-tested cases of SARS-CoV-2 lineage B.1.1.7. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5105920

20 July 2021

Davies, NG (2021). nicholasdavies/amr-competition-diversity: Full release for publication. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5116443

21 July 2021

Knight, G (2021). gwenknight/hai_first_wave. [Data Collection]. Github. https://github.com/gwenknight/hai_first_wave

28 July 2021

Wong, A, Bacon, S, Walker, A, Davy, S, Inglesby, P and MacKenna, B (2021). opensafely/anticoagulants-research. [Data Collection]. Github. https://github.com/opensafely/anticoagulants-research

9 August 2021

Aburto, JM, Schöley, J, Kashnitsky, I, Knowles, I, Zhang, L, Rahal, C, Missov, TI, Dowd, JB, Mills, MC and Kashyap, R (2021). Code to replicate "Quantifying impacts of the COVID-19 pandemic through life expectancy losses". [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4556982

12 August 2021

Roberts, C and Stott, C (2021). LSHTM-ORK/ODK_Biometrics. [Data Collection]. Github. https://github.com/LSHTM-ORK/ODK_Biometrics

Drake, C, Hernandez, A, Liu, Y, Schwartz, AH and Sundaram, M (2021). yangclaraliu/armslist_scraping. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5185707

16 August 2021

Wang, SY, Stark, A, Evan Ray, Bosse, N, Reich, NG, Sherratt, K, Shah, A, Wattanachit, N, Khoale1096, Huang, YD, Gerding, A, Gruson, H, Cramer, E, Shandross, L, Abbott, S and Funk, S (2021). reichlab/covidHubUtils. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5207939

23 August 2021

Millington, J, Okpako, O and Herrick, C (2021). Analysis of non-communicable disease reports contributing to UN high-level meeting process (2000-2020). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5236552

Pishgar, F, Greifer, N, Leyrat, C and Stuart, E (2021). MatchThem: Matching and Weighting Multiply Imputed Datasets. [Data Collection]. The Comprehensive R Archive Network. https://cran.r-project.org/package=MatchThem

26 August 2021

Mccreesh, N (2021). NickyMcC/CasualAgeMixing. [Data Collection]. Github. https://github.com/NickyMcC/CasualAgeMixing

6 September 2021

Dodd, PJ (2021). petedodd/NotTB. [Data Collection]. Github. https://github.com/petedodd/NotTB

11 September 2021

Robert, A, Funk, S, Kucharski, AJ and Jombart, T (2021). o2geosocial: Reconstruction of Transmission Chains from Surveillance Data. [Data Collection]. Comprehensive R Archive Network. https://cran.r-project.org/package=o2geosocial

14 September 2021

Mayerová, D and Abbas, KM (2021). d-mayerova/Vaccine_confidence_Albania. [Data Collection]. Github. https://github.com/d-mayerova/Vaccine_confidence_Albania

21 September 2021

Landau, W, Landau, W, Bond-Lamberty, B, Strasiotto, M, McBain, M, Müller, K, Mahr, T, Hughes, E, Ross, N, Bell, K, Ingerson, S, Aden-Buie, G, Gomolka, M, Knoblauch, N, Albers, S, brendanf, evalparse, Denney, B, Muir, C, Barrett, M, Krug, RM, Kehayas, V, Schratz, P, Zhao, B, Hlynur, Gruson, H, Jasper, Ooms, J, Walthert, L and Dray, M (2021). ropensci/drake. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.1160696

6 October 2021

Williams, J, Naylor, N and Briggs, A (2021). Decision Modelling for Health Economic Evaluation R Code. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5552710

29 October 2021

Gibbs, H (2021). hamishgibbs/ghana_rt_npi_mobility. [Data Collection]. Github. https://github.com/hamishgibbs/ghana_rt_npi_mobility

1 November 2021

Strongman, H and Carreira, H (2021). STATA Do files for "Factors associated with excess mortality in the first wave of COVID-19 pandemic in the UK: a cohort analysis using the Clinical Practice Research Databank". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002560.

6 November 2021

Masselot, P (2021). PierreMasselot/Paper--2021--JRSS_SA--Machine_Learning_Thresholds. [Data Collection]. Github. https://github.com/PierreMasselot/Paper--2021--JRSS_SA--Machine_Learning_Thresholds

15 November 2021

Otiende, M, Bauni, E, Nyaguara, A, Amadi, D, Nyundo, C, Tsory, E, Walumbe, D, Kinuthia, M, Kihuha, N, Kahindi, M, Nyutu, G, Moisi, J, Deribew, A, Agweyu, A, Marsh, K, Tsofa, B, Bejon, P, Bottomley, C, Williams, TN and Scott, JAG (2021). Replication Data for: Mortality in rural coastal Kenya measured using the Kilifi Health and Demographic Surveillance System: a 16-year descriptive analysis. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/DDX7OK

25 November 2021

Abbott, S and Monticone, P (2021). epiforecasts/epinowcast. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5637165

Ling, S (2021). supingling/overtreatment. [Data Collection]. Github. https://github.com/supingling/overtreatment

6 December 2021

Hesselbarth, M, actions-user, Sciaini, M, Hereñú, D, Gruson, H and Etherington, T (2021). r-spatialecology/shar. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5761582

14 December 2021

Jarvis, CI and Jombart, T (2021). jarvisc1/2020-reporting. [Data Collection]. Github. https://github.com/jarvisc1/2020-reporting

15 December 2021

Stelle, I, Bah, M, Silverio, SA, Verhoef, H, Comma, E, Prentice, AM, Moore, SE and Cerami, C (2021). Extended Data: Iron supplementation of breastfed Gambian infants from 6 weeks to 6 months of age: Protocol for a randomised controlled trial. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.17206319.v1

16 December 2021

Lin, LY (2021). liang-yu12/vd_covid. [Data Collection]. Github. https://github.com/liang-yu12/vd_covid

23 December 2021

Silver, M (2021). SoCFourier. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5801479

5 January 2022

Davidson, J, Herrett, E, Strongman, H and Gadd, S (2022). emilyherrett/qrisk_cprd_aurum: QRISK Aurum bundle version 2.0. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5822520

6 January 2022

Spadar, A (2022). AntonS-bio/entropy. [Data Collection]. GitHub. https://github.com/AntonS-bio/entropy

7 January 2022

Nightingale, E (2022). esnightingale/covid_deaths_spatial. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5763663

24 January 2022

Wick, RR and Holt, KE (2022). Genome details for the simulated-read tests. [Data Collection]. PLOS Computational Biology. https://doi.org/10.1371/journal.pcbi.1009802.s015

25 January 2022

Meakin, S and Abbott, S (2022). epiforecasts/covid19-hospital-activity. [Data Collection]. Github. https://github.com/epiforecasts/covid19-hospital-activity

Weerasuriya, CK (2022). weerasuriya/tbconvax-pcb. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5902656

26 January 2022

Knight, G and Baede, VO (2022). gwenknight/strain_growth. [Data Collection]. Github. https://github.com/gwenknight/strain_growth

28 January 2022

Schwarzer, G, Carpenter, JR and Rücker, G (2022). metasens: Statistical Methods for Sensitivity Analysis in Meta-Analysis. [Data Collection]. The Comprehensive R Archive Network.

30 January 2022

Carvalho-Pereira, T, Eyre, MT, Zeppelini, CG, Espirito Santo, VF, Santiago, DC, Santana, R, Palma, F, Reis, M, Lustosa, R, Khalil, H, Diggle, PJ, Giorgi, E, Costa, F and Begon, M (2022). Dataset used in the assessment of the article "Basic urban services fail to neutralise environmental determinants of 'rattiness', a composite metric of rat abundance". [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5920038

2 February 2022

Coll, F (2022). francesccoll/powerbacgwas. [Data Collection]. Github. https://github.com/francesccoll/powerbacgwas/

4 February 2022

Reichenberger, V (2022). Participatory Visual Methods with caregivers of children with Congenital Zika Syndrome in Colombia: A case study. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002745.

8 February 2022

Cerdeira, L and Dyson, ZA (2022). zadyson/TyphiNET. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5338903

15 February 2022

Barrott, I, Barrett, J, Keogh, R, Sweeting, M and Stevens, D (2022). Landmarking: Analysis using Landmark Models. [Data Collection]. Comprehensive R Archive Network. https://cran.r-project.org/package=Landmarking

16 February 2022

Sweeney, S (2022). Stata Do Files for pooling and analysis. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/9XZBGE

18 February 2022

Sudharsanan, N, Aburto, JM, Riffe, T and van Raalte, A (2022). Omran revisited. [Data Collection]. OSF. https://osf.io/vwd37

28 February 2022

Melendez-Torres, GJ, Warren, E, Ukoumunne, OC, Viner, R and Bonell, C (2022). Additional file 1 of Locating and testing the healthy context paradox: examples from the INCLUSIVE trial. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.19246465.v1

1 March 2022

Hodgson, D and Abbott, S (2022). dchodge/hero-study: Version submitted with WOR reviewers comments. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5215671

9 March 2022

Kiniry, SJ and Judge, C (2022). skiniry/Trips-Viz. [Data Collection]. Github. https://github.com/skiniry/Trips-Viz

13 March 2022

Davidson, J (2022). jenAdavidson/sccs_fluvacc_cvd. [Data Collection]. Github. https://github.com/jenAdavidson/sccs_fluvacc_cvd

21 March 2022

Leclerc, QJ (2022). qleclerc/mrsa_phage_dynamics. [Data Collection]. Github. https://github.com/qleclerc/mrsa_phage_dynamics

31 March 2022

Aburto, JM (2022). jmaburto/ex_USA_racial-ethnic_differences. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.6402403

7 April 2022

Rees, E (2022). erees/leptoSerology. [Data Collection]. Github. https://github.com/erees/leptoSerology

11 April 2022

Fu, Y, Wang, D, Chuang, J and Fu, H (2022). Social contact data for Taiwan. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.6385758

14 April 2022

d-j-e, Holt, KE and Wyres, KL (2022). katholt/RedDog. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.6460229

19 April 2022

Morris, TP, Walker, AS, Williamson, EJ and White, IR (2022). Additional file 1 of Planning a method for covariate adjustment in individually randomised trials: a practical guide. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.19613608.v1

Morris, TP, Walker, AS, Williamson, EJ and White, IR (2022). Additional file 2 of Planning a method for covariate adjustment in individually randomised trials: a practical guide. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.19613611.v1

28 April 2022

Masselot, P (2022). PierreMasselot/Paper--2022--EE--Heat_climate. [Data Collection]. Github. https://github.com/PierreMasselot/Paper--2022--EE--Heat_climate

4 May 2022

Eletti, A, Marra, G, Quaresma, M, Radice, R and Rubio, FJ (2022). FJRubio67/LBANS/. [Data Collection]. Github. https://github.com/FJRubio67/LBANS/

9 May 2022

Jombart, T (2022). epiverse-trace/linelist. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.6532786

Allel, K (2022). kasimallel/Modelling-analysing-GN-ABR-for-transmission-in-a-Chilean-semi-rural-community. [Data Collection]. Github. https://github.com/kasimallel/Modelling-analysing-GN-ABR-for-transmission-in-a-Chilean-semi-rural-community

11 May 2022

Barnsley, G and Watson, OJ (2022). mrc-ide/covid-vaccine-impact-orderly. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.6539430

17 May 2022

Bosse, N, Abbott, S, Reich, NG and Funk, S (2022). epiforecasts/scoringutils. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4618017

19 May 2022

Roberts, C and Bustinduy, A (2022). Female Genital Schistosomiasis - Medical Training Device. [Data Collection]. Thingiverse. https://www.thingiverse.com/thing:5389502

Roberts, C and Bustinduy, A (2022). Swabbable Vagina and Vulva - Medical training device. [Data Collection]. Thingiverse. https://www.thingiverse.com/thing:5389526

20 May 2022

Oliphant, N, Ray, N, Curtis, A, Musa, E, Sesay, M, Kandeh, J, Kamara, A, Chimoun, EFT, Jackson, D and Doherty, T (2022). Supplementary appendix 1b of Oliphant NP, Ray N, Curtis A et al. Optimising scale and deployment of community health workers in Sierra Leone: a geospatial analysis. 2022. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5712134

22 May 2022

Courtin, E (2022). emiliecourtin/maternityleave. [Data Collection]. Github. https://github.com/emiliecourtin/maternityleave

25 May 2022

Clark, R, Mukandavire, C, Weerasuriya, C, Bakker, R and White, RG (2022). TBVAX Model. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.6421372

Dyson, ZA (2022). zadyson/SNV_Stats_Generator. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.6581275

1 June 2022

Colelli, FP, Emmerling, J, Mistry, M, Marangoni, G and De Cian, E (2022). Additional Data and Code from "Increased energy use for adaptation significantly impacts mitigation pathways". [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.6603718

7 June 2022

Sumner, T (2022). tomsumner/Variance_SA_TB. [Data Collection]. GitHub. https://github.com/tomsumner/Variance_SA_TB

8 June 2022

Kisesa HIV Open Cohort study and ALPHA Network (2022). ALPHA HIV Incidence and Mortality Data, Kisesa 1994-2016. [Data Collection]. DataFirst, Cape Town, South Africa. https://doi.org/10.25828/SGBS-Q698

13 June 2022

Madaniyazi, L, Tobias, A, Kim, Y, Chung, Y, Armstrong, B and Hashizume, M (2022). LinaMadaniyazi/Assessing-seasonality-and-the-role-of-its-potential-drivers-in-environmental-epidemiology-a-tutorial. [Data Collection]. Github. https://github.com/LinaMadaniyazi/Assessing-seasonality-and-the-role-of-its-potential-drivers-in-environmental-epidemiology-a-tutorial

15 June 2022

Roberts, C (2022). chrissyhroberts/OMR_LSHTM. [Data Collection]. Github. https://github.com/chrissyhroberts/OMR_LSHTM

21 June 2022

Cerqueira-Silva, T, de Araujo Oliveira, V, Paixão, ES, Júnior, JB, Penna, GO, Werneck, GL, Pearce, N, Barreto, ML, Boaventura, VS and Barral-Netto, M (2022). Duration of protection of CoronaVac plus heterologous BNT162b2 booster in the Omicron period in Brazil. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.6657862

Waterlow, N (2022). NaomiWaterlow/NhaTrang_flu_rsv_interaction. [Data Collection]. Github. https://github.com/NaomiWaterlow/NhaTrang_flu_rsv_interaction

Krauer, F (2022). fkrauer/RSV-seasonality-public. [Data Collection]. Github. https://github.com/fkrauer/RSV-seasonality-public

24 June 2022

Vallat, R, Appelhoff, S, Spaak, E, JElfner, systole-docs, Tan, G, Paulino, A, Dominic C., Leicas, Nárai, Ádám, Wallan, S, Barthélemy, Q, Weixin, J, Singaravelan, K, Crabtree, KN, Punčochář, M, Legrand, N, Jolly, E, Cederstrand, E, To, I, Hale, J, Kahle, M, Mathot, S, Wase, V, Filipec, V, gedeck, Libiseller-Egger, J and xfz329 (2022). raphaelvallat/pingouin. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.1491783

25 June 2022

Checchi, F (2022). francescochecchi/mortality_capture_recapture_analysis. [Data Collection]. Github. https://github.com/francescochecchi/mortality_capture_recapture_analysis

29 June 2022

Higgins, M (2022). MatthewHiggins2017/bioconda-PrimedRPA. [Data Collection]. Github. https://github.com/MatthewHiggins2017/bioconda-PrimedRPA

Huang, S and Libiseller-Rgger, J (2022). ShujiaHuang/qmplot. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.6776156

4 July 2022

Grant, AD and Kielmann, K (2022). Qualitative and Quantitative Data for Tuberculosis Infection Prevention and Control in KwaZulu-Natal and Western Cape, South Africa, 2018-2021. [Data Collection]. UK Data Service, Colchester, Essex, United Kingdom. https://doi.org/10.5255/UKDA-SN-854435

13 July 2022

Masselot, P (2022). PierreMasselot/cgaim. [Data Collection]. Github. https://github.com/PierreMasselot/cgaim

15 July 2022

Masselot, P (2022). PierreMasselot/cirls. [Data Collection]. Github. https://github.com/PierreMasselot/cirls

Masselot, P (2022). cgaim: Constrained Groupwise Additive Index Models. [Data Collection]. The Comprehensive R Archive Network. https://cran.r-project.org/package=cgaim

Checchi, F, Frison, S and Warsame, A (2022). francescochecchi/acute_malnutrition_predictive_models. [Data Collection]. Github. https://github.com/francescochecchi/acute_malnutrition_predictive_models

18 July 2022

Nigri, A, Aburto, JM, Basellini, U and Bonetti, M (2022). Code: Evaluation of age-specific causes of death in the context of the Italian longevity transition. [Data Collection]. OSF. https://osf.io/yr92s/?view_only=a899e63ae7274374b23aecd457edf425

25 July 2022

Nájera Espinosa, S, Pastorino, S and Scheelbeek, P (2022). Mapping the evidence of plant-based alternative foods: A systematic literature review protocol on nutritional, health, and environmental impacts. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003015.

26 July 2022

Muzambi, R (2022). RutendoMuzambi/InfectionsCognitionNeuroimaging. [Data Collection]. Github. https://github.com/RutendoMuzambi/InfectionsCognitionNeuroimaging

Koltai, M and Krauer, F (2022). mbkoltai/RSV-resurgence-model. [Data Collection]. Github. https://github.com/mbkoltai/RSV-resurgence-model

1 August 2022

Ling, S (2022). supingling/BiasAnalysis. [Data Collection]. Github. https://github.com/supingling/BiasAnalysis

4 August 2022

Greener, R (2022). ragreener1/deliveroo-scraper. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.6961922

Greener, R (2022). ragreener1/justeat-scraper. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.6962017

6 August 2022

Gibbs, H, Waterlow, NR, Cheshire, J, Danon, L, Liu, Y, Grundy, C, Kucharski, AJ and Eggo, RM (2022). hamishgibbs/facebook_population_2020_2021. [Data Collection]. Github. https://github.com/hamishgibbs/facebook_population_2020_2021

10 August 2022

Pearson, CAB, Russell, TW and Kucharski, AJ (2022). cmmid/SA2UK: CEA submission. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.6979557

11 August 2022

Kopec-Harding, K and Costello, R (2022). ARUKCFE/BmiAlgorithm. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.797044

Endo, A, Van leeuwen, E and Jomaba, M (2022). akira-endo/Intro-PMCMC. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.6984353

Endo, A, Murayama, H, Abbott, S, Ratnayake, R, Pearson, CAB, Edmunds, WJ, Fearon, E and Funk, S (2022). akira-endo/monkeypox_heavytail: Heavy-tailed sexual contact networks and the epidemiology of monkeypox outbreak in non-endemic regions. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.6984337

13 August 2022

Thompson, JA, Leyrat, C, Fielding, KL and Hayes, RJ (2022). Additional file 2 of Cluster randomised trials with a binary outcome and a small number of clusters: comparison of individual and cluster level analysis method. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.20484843.v1

23 August 2022

Endo, A, Uchida, M, Liu, Y, Atkins, KE, Kucharski, AJ and Funk, S (2022). akira-endo/schooldynamics_FluMatsumoto14-15: Simulating respiratory disease transmission within and between classrooms to assess pandemic management strategies at schools. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5604502

31 August 2022

Grant, A and Kielmann, K (2022). Qualitative and quantitative data for tuberculosis Infection prevention and control in South Africa (KwaZulu-Natal and Western Cape). [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom, South Africa. https://doi.org/10.17037/DATA.00002919.

1 September 2022

Waterlow, N (2022). NaomiWaterlow/NextGenFlu_Kenya. [Data Collection]. GitHub. https://github.com/NaomiWaterlow/NextGenFlu_Kenya

2 September 2022

Masselot, P (2022). PierreMasselot/Paper--2017--Nonparametric-L-moment-homogeneity-test. [Data Collection]. Github. https://github.com/PierreMasselot/Paper--2017--Nonparametric-L-moment-homogeneity-test

5 September 2022

Napier, G (2022). GaryNapier/comp_mut. [Data Collection]. https://github.com/GaryNapier/comp_mut

8 September 2022

Jombart, T, actions-user, Gruson, H and Pavlich-Mariscal, J (2022). epiverse-trace/blueprints: 0.0.2. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7062318

21 September 2022

Avoka, CK, Banke-Thomas, A, Beňová, L, Radovich, E and Campbell, OMR (2022). Use of motorised transport and pathways to childbirth care in health facilities: Evidence from the 2018 Nigeria Demographic and Health Survey. S1 Data. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0000868.s009

23 September 2022

Grenié, M, Gruson, H, Silge, J and Tucker, C (2022). Rekyt/funrar. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.596011

25 September 2022

Colvin, C, Swartz, A, Kallon, I, Kielmann, K and Macgregor, H (2022). Umoya omuhle: Infection prevention and control for drug-resistant tuberculosis in South Africa in the era of decentralised care: A whole systems approach. Research Questions 3 and 4_KwaZulu Natal. [Data Collection]. University of Cape Town. https://doi.org/10.25375/uct.14873202.v1

3 October 2022

Roberts, C, Stott, C, Lal, S, Marks, M, Shawe-Taylor, M and Chaudhry, Z (2022). Biometric linkage of longitudinally collected electronic case report forms and confirmation of subject identity: An open framework for Open Data Kit (ODK) and related tools. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003115.

4 October 2022

Benest, J (2022). ISIDLSHTM/CoBeDOA. [Data Collection]. GitHub. https://github.com/ISIDLSHTM/CoBeDOA

5 October 2022

Gruson, H and actions-user (2022). Bisaloo/asymptor. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4326986

Sbarra, AN, Mosser, JF, Jit, M, Ferrari, M, Ramshaw, RE, O'Connor, P, Krause, LK, Rogowski, EL and Portnoy, A (2022). Estimating national-level measles case–fatality ratios in low-income and middle-income countries: an updated systematic review and modelling study. [Data Collection]. Zenodo. https://zenodo.org/record/7633577

Wick, R, kelwyres, Pan, A, Stanton, T, Watts, S and Lee, T (2022). kelwyres/Kaptive-Web. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7039364

11 October 2022

Atkins, KE and Hodgson, D (2022). katiito/rsvvaccines_amr. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7185501

12 October 2022

Abbott, S and Bosse, N (2022). epiforecasts/simplified-forecaster-evaluation. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7189308

Abbott, S and Sherratt, K (2022). seabbs/ecdc-weekly-growth-forecasts. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7189620

14 October 2022

Lucinde, RK, Mugo, D, Bottomley, C, Karani, A, Gardiner, E, Aziza, R, Gitonga, JN, Karanja, H, Nyagwange, J, Tuju, J, Wanjiku, P, Nzomo, E, Kamuri, E, Thuranira, K, Agunda, S, Nyutu, G, Etyang, AO, Adetifa, IMO, Kagucia, E, Uyoga, S, Otiende, M, Otieno, E, Ndwiga, L, Agoti, CN, Aman, RA, Mwangangi, M, Amoth, P, Kasera, K, Nyaguara, A, Ng’ang’a, W, Ochola, LB, Namdala, E, Gaunya, O, Okuku, R, Barasa, E, Bejon, P, Tsofa, B, Ochola-Oyier, LI, Warimwe, GM, Agweyu, A, Scott, JAG and Gallagher, KE (2022). Stan code and input data for estimating adjusted seroprevalence. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0265478.s005

20 October 2022

Simons, D (2022). DidDrog11/lassa_underreporting. [Data Collection]. Github. https://github.com/DidDrog11/lassa_underreporting

22 October 2022

Masselot, P (2022). PierreMasselot/Paper--2022--Biostatistics--CGAIM. [Data Collection]. Github. https://github.com/PierreMasselot/Paper--2022--Biostatistics--CGAIM

Ling, S (2022). supingling/CancerInDiabetes. [Data Collection]. GitHub. https://github.com/supingling/cancerindiabetes

26 October 2022

Butcher, RMR, Mccormick, I and RAAB Team (2022). raabteam/raab7-analysis. [Data Collection]. Github. https://github.com/raabteam/raab7-analysis

9 November 2022

Henderson, A (2022). hendersonad/2020_multimorbidity. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5268826

14 November 2022

McQuaid, CF, Henrion, MYR, Burke, RM, MacPherson, P, Nzawa-Soko, R and Horton, KC (2022). Additional file 1 of Inequalities in the impact of COVID-19-associated disruptions on tuberculosis diagnosis by age and sex in 45 high TB burden countries. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.21550982.v1

22 November 2022

Gruson, H and Grenié, M (2022). fundiversity: Easy Computation of Functional Diversity Indices. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4761754

25 November 2022

Bosse, N, Abbott, S and Funk, S (2022). epiforecasts/covid.german.forecasts. [Data Collection]. Github. https://github.com/epiforecasts/covid.german.forecasts

19 December 2022

Parker, E and Horne, E (2022). opensafely/ckd-coverage-ve. [Data Collection]. Github. https://github.com/opensafely/ckd-coverage-ve

Keddie, S (2022). shk313/diagnostic-test-metaanalysis/CrAg. [Data Collection]. GitHub. https://github.com/shk313/diagnostic-test-metaanalysis/tree/main/CrAg

21 December 2022

Weerasuriya, C and Clark, R (2022). lshtm-tbmg/tbvax-pub. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.6421372

27 December 2022

Hodgson, D (2022). dchodge/nambcea. [Data Collection]. Github. https://github.com/dchodge/nambcea

15 January 2023

Pung, R, Clapham, HE, Russell, TW, Lee, VJ and Kucharski, AJ (2023). Relative role of border restrictions, case finding and contact tracing in controlling SARS-CoV-2 in the presence of undetected transmission: a mathematical modelling study. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7538040

16 January 2023

Phelan, JE and Menzel, P (2023). jodyphelan/tbdb. [Data Collection]. Github. https://github.com/jodyphelan/tbdb

19 January 2023

Knight, G and LSHTM Library, Archive & Open Research Services (2023). Data Management for MSc Summer Projects. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001857.

20 January 2023

Nab, L, Davy, S, Parker, E and Hulme, W (2023). opensafely/covid_mortality_over_time. [Data Collection]. Github. https://github.com/opensafely/covid_mortality_over_time

23 January 2023

Phelan, J (2023). jodyphelan/host-pathogen. [Data Collection]. Github. https://github.com/jodyphelan/host-pathogen

Unwin, J, Challenger, J, Watson, OJ, Hellewell, J, FitzJohn, R and Sherrard-Smith, E (2023). mrc-ide/deterministic-malaria-model: nets_paper. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7559615

1 February 2023

Thindwa, D and Clifford, S (2023). deusthindwa/ optimal.age.targeting.pneumo.vaccines: OptionaAgeTargetingPneumococcalVaccines. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7592904

3 February 2023

Pillai, AN, Hladish, T, Pearson, CAB, Toh, B, Noah4944 and Stoltzfus, A (2023). tjhladish/covid-abm: Active Vaccination Experiment 2023-02-02. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7601663

7 February 2023

Clifford, S and Hackman, J (2023). Effectiveness of BNT162b2 and ChAdOx1 against SARS-CoV-2 household transmission. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7618847

Liu, Y, Procter, SR, Pearson, CAB, Madriz Montero, A, Torres-Rueda, S, Asfaw, E, Uzochukwu, B, Drake, T, Bergren, E, Eggo, RM, Ruiz, F, Ndembi, N, Nonvignon, J, Jit, M and Vassall, A (2023). yangclaraliu/covid_vac_africa: BMCMed_R3. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7618748

10 February 2023

Mulla, S, Ludlam, AR, Elragig, A, Slack, C, Balklava, Z, Stich, M and Cheong, A (2023). Supplementary material from "A biphasic model of lifespan in nematode Caenorhabditis elegans worm". [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.6403443.v2

16 February 2023

Giannini, F and Abbas, K (2023). fionagi/GASImpactModel. [Data Collection]. GitHub. https://github.com/fionagi/GASImpactModel

19 February 2023

Napier, G (2023). GaryNapier/spolpred. [Data Collection]. Github. https://github.com/GaryNapier/spolpred

20 February 2023

Suffel, AM (2023). Eyedeet/vaccine_methods_ehr_public/. [Data Collection]. Github. https://github.com/Eyedeet/vaccine_methods_ehr_public/

28 February 2023

Sanderson, T, Bileschi, M and Belanger, D (2023). google-research/proteinfer. [Data Collection]. Github. https://github.com/google-research/proteinfer

9 March 2023

Gasparrini, A (2023). gasparrini/MCC-SO2. [Data Collection]. Github. https://github.com/gasparrini/MCC-SO2

10 March 2023

Leurent, B (2023). SADD synthetic cost-effectiveness dataset. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.19802632.v4

13 March 2023

Keddie, SH (2023). shk313/Evaluating-sensitivity-and-specificity-from-LCM-a-simulation-study. [Data Collection]. Github. https://github.com/shk313/Evaluating-sensitivity-and-specificity-from-LCM-a-simulation-study

16 March 2023

Van Zandvoort, K and Checchi, F (2023). Shielding individuals at high risk of COVID-19: a micro-simulation study. Model and analyses. [Data Collection]. Github. https://doi.org/10.5281/zenodo.7740538

1 April 2023

Chapman, LA, Aubry, M, Maset, N, Russell, T, Knock, ES, Lees, JA, Mallet, H, Cao-Lormeau, V and Kucharski, AJ (2023). Impact of vaccinations, boosters and lockdowns on COVID-19 waves in French Polynesia. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7790839

4 April 2023

Mclean, E (2023). Local and long-distance migration among young people in rural Malawi: importance of age, sex and family (author-writter code). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7797356

Emes, ET and Naylor, N (2023). Trescovia/AHHME. [Data Collection]. Github. https://github.com/Trescovia/AHHME

Abbott, S (2023). seabbs/badtobetter: Initial release. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7799448

26 April 2023

Lotto Batista, M, Rees, EM, Gómez, A, López, S, Castell, S, Kucharski, AJ, Ghozzi, S, Müller, GV and Lowe, R (2023). Data and R-code to accompany 'Towards an Early Warning System for Leptospirosis in North-Eastern Argentina'. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7865638

1 May 2023

Leung, WTM (2023). wtm-leung/Network-modelling-review: Network modelling review v1.0.0. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7883258

2 May 2023

Ekoriko, P (2023). lshtm-public/rds-ui. [Data Collection]. Bitbucket. https://bitbucket.org/lshtm-public/rds-ui

23 May 2023

Bosse, N, Bracher, J, Abbott, S and Funk, S (2023). epiforecasts/transformation-forecast-evaluation. [Data Collection]. Github. https://github.com/epiforecasts/transformation-forecast-evaluation

7 June 2023

Simons, D (2023). DidDrog11/arenavirus_hantavirus_app. [Data Collection]. Github. https://github.com/DidDrog11/arenavirus_hantavirus_app

12 June 2023

Soremekun, S, Källander, K, Lingam, R, Branco, AC, Batura, N, Strachan, DL, Muiambo, A, Salomao, N, Condoane, J, Benhane, F, Kasteng, F, Vassall, A, Hill, Z, ten Asbroek, G, Meek, S, Tibenderana, J and Kirkwood, B (2023). Restricted Randomisation Procedure and codes–inSCALE Mozambique. [Data Collection]. PLOS Digital Health. https://doi.org/10.1371/journal.pdig.0000235.s003

Piper, J, Ntozini, R and Prendergast, A (2023). SHINE 7-year Follow-up. [Data Collection]. Open Science Framework. https://doi.org/10.17605/OSF.IO/PHV83

14 June 2023

Graham, S (2023). grahams99/Enhanced_surveillance_questionnaire. [Data Collection]. Github. https://github.com/grahams99/Enhanced_surveillance_questionnaire

23 June 2023

Checchi, F (2023). francescochecchi/yem_diaspora_mortality. [Data Collection]. Github. https://github.com/francescochecchi/yem_diaspora_mortality

11 July 2023

Prem, K (2023). kieshaprem/hpv-1-dose: First release of the HPV 1-dose global repository. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.8133734

18 July 2023

Hou, Z, Lai, X, Liu, Y, Jit, M, Larson, H and Hai, F (2023). Assessing the impact of the 2018 Changchun Changsheng vaccine incident on childhood vaccination in China. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.8158678

29 July 2023

Wariri, O (2023). drwariri/Mapping-the-timeliness-of-routine-childhood-vaccination-in-The-Gambia-a-spatial-modelling-study. [Data Collection]. Github. https://github.com/drwariri/Mapping-the-timeliness-of-routine-childhood-vaccination-in-The-Gambia-a-spatial-modelling-study

16 August 2023

Gonçalves, BP (2023). BronnerG/Hosp_Vacc_analysis: v1. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.8252908

27 August 2023

Burkhart Colorado, AS, Lazzaro, A, Preston, C, Nusbacher, N, Boyd, K, Fiorillo, S, Martin, C, Siebert, J and Campbell, T (2023). Differential effects of antiretroviral treatment on immunity and gut microbiome composition in people living with HIV in rural versus urban Zimbabwe. [Data Collection]. Zenodo. https://zenodo.org/records/8346401

September 2023

International Centre for Eye Health (2023). Rapid Assessment of Avoidable Blindness Study Protocol Template. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/PUBS.00003744.

13 September 2023

Cerdeira, L, Dyson, ZA and Holt, KE (2023). typhoidgenomics/TyphiNET: New release. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.5281/zenodo.5338903

16 September 2023

Garcia, KKS, Soremekun, S, Bottomley, C, Abrahão, AA, de Miranda, CB, Drakeley, C, Ramalho, WM and Siqueira, AM (2023). Additional file 3 of Assessing the impact of the “malaria supporters project” intervention to malaria control in the Brazilian Amazon: an interrupted time-series analysis. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.24151176.v1

21 September 2023

Knight, GM, Waterlow, N, Wildfire, J and Clements, AJ (2023). aj-clements/Vivli-AMR-KG. [Data Collection]. Github. https://github.com/aj-clements/Vivli-AMR-KG/

27 September 2023

Waterlow, N (2023). NaomiWaterlow/markov_model: V1.0.0. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.8382636

Leclerc, QJ (2023). qleclerc/phage_antibiotic_dynamics. [Data Collection]. Github.

28 September 2023

Wang, L (2023). linfeng-wang/GMM4TB. [Data Collection]. Github. https://github.com/linfeng-wang/GMM4TB

29 September 2023

Lambert, J, Gruson, H, Kucharski, AJ, Gupte, P, Salmon, M, Campos, AV and Monticone, P (2023). epiverse-trace/epiparameter. [Data Collection]. Github. https://github.com/epiverse-trace/epiparameter/

4 October 2023

Bradley, E and Lopez, G (2023). WorldHealthOrganization/mca-pretermbirths-analysis. [Data Collection]. Github. https://github.com/WorldHealthOrganization/mca-pretermbirths-analysis

5 October 2023

Pearson, CAB, Thompson, S, Van Zandvoort, K, Eggo, RM and Jarvis, CI (2023). cmmid/covidm_reports: HEA Snapshot. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7741616

6 October 2023

Zheng, B and lshbz1 (2023). opensafely/Paxlovid-and-sotrovimab. [Data Collection]. Github. https://github.com/opensafely/Paxlovid-and-sotrovimab

12 October 2023

Bradley, E (2023). VN Types Bayesian Modelling. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001611.

13 October 2023

Pearson, CAB and Hladish, T (2023). tjhladish/AbcSmc. [Data Collection]. Github. https://github.com/tjhladish/AbcSmc

21 October 2023

Etienne, RS, Valente, L, Phillimore, AB, Haegeman, B, Lambert, JW, Santos Neves, P, Xie, S, Bilderbeek, RJ, Hildenbrandt, H, Hauffe, T, Laudanno, G, Kristensen, N and Scherrer, R (2023). DAISIE: Dynamical Assembly of Islands by Speciation, Immigration and Extinction. [Data Collection]. Comprehensive R Archive Network. https://cran.r-project.org/package=DAISIE

23 October 2023

Neves, PS, Lambert, JW, Etienne, RS, Bilderbeek, R, Xie, S, Valente, L, Hildenbrandt, H, Scherrer, R and Yangshen0325 (2023). rsetienne/DAISIE. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4054058

31 October 2023

Blom, I (2023). Annexes to: A Systematic Review to Identify the Effectiveness of Greenhouse Gas Mitigation Interventions for Healthcare Systems in Low- and Middle-Income Countries. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003678.

Jung, S, Miura, F, Endo, A and Murayama, H (2023). SungmokJung/mpox_global: Initial release. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10056592

6 November 2023

PANGEA-HIV Consortium (2023). PANGEA-HIV/PANGEA-Sequences: v1.0.0. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10075814

10 November 2023

Graham, S (2023). grahams99/Health-seeking-behaviour. [Data Collection]. Github. https://github.com/grahams99/Health-seeking-behaviour

15 November 2023

Namulondo, J, Nyangiri, OA, Kimuda, MP, Nambala, P, Nassuuna, J, Egesa, M, Nerima, B, Biryomumaisho, S, Mugasa, CM, Nabukenya, I, Kato, D, Elliott, A, Noyes, H, Tweyongyere, R, Matovu, E and Mulindwa, J (2023). RNA Sequence data analysis using DESeq2 pipeline. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0011455.s009

20 November 2023

Gibb, R (2023). rorygibb/dengue_vietnam_ms: v1.0.0: Code base for Nature Communications MS. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10159288

24 November 2023

Quevedo, DS, Gupte, P, Gomez, G, Gruson, H, Hartgerink, C, tracelac and Cucunubá, ZM (2023). epiverse-trace/vaccineff: vaccineff 0.0.1. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.11449783

28 November 2023

Abbott, S, Hellewell, J, Lucas, T, Funk, S and Gimma, A (2023). epiforecasts/ringbp. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3749529

29 November 2023

Abbott, S, Russell, TW, Hellewell, J and Kucharski, AJ (2023). thimotei/legacy_ct_modelling: Final version. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10223417

Riffe, T, Acosta, E, Kamal, M, Donzowa, J, mskniffka, Dudel, C, Cimentada, J, Alburez, D, aishwaryamuralikrishnan, Aburto, JM, Pascariu, MD, Del Fava, E and Ribeiro, F (2023). timriffe/covid_age. [Data Collection]. Github. https://github.com/timriffe/covid_age

1 December 2023

Sherratt, K, Abbott, S, Carnegie, A and Liu, Y (2023). Improving modelling for epidemic responses: reflections. [Data Collection]. Open Science Framework. https://doi.org/10.17605/OSF.IO/4JNCB

4 December 2023

Simons, D (2023). DidDrog11/data_for_gbif: Final version for Gigabyte. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7703228

7 December 2023

Pearson, CAB, Hladish, T, Pillai, AN and Chao, D (2023). tjhladish/dengue-abm. [Data Collection]. Github. https://github.com/tjhladish/dengue-abm

11 December 2023

Emery, JC, Dodd, PJ, Banu, S, Frascella, B, Garden, FL, Horton, KC, Hossain, S, Law, I, van Leth, F, Marks, GB, Nguyen, HB, Nguyen, HV, Onozaki, I, Quelapio, MID, Richards, AS, Shaikh, N, Tiemersma, EW, White, RG, Zaman, K, Cobelens, F and Houben, RM (2023). epidemery/subclinical_transmission. [Data Collection]. GitHub. https://github.com/epidemery/subclinical_transmission

12 December 2023

London School of Hygiene & Tropical Medicine (2023). Whole-Genome Sequencing of Chlamydia trachomatis Strains B/HAR36 and B/Tunis864. [Data Collection]. NCBI Bioproject. https://www.ncbi.nlm.nih.gov/bioproject/1051460

18 December 2023

Greener, R (2023). 0xr0bert/ubereats-scraper. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.6962078

2024

Penzias, RE, Bohne, C, Ngwala, SK, Zimba, E, Lufesi, N, Rashid, E, Gicheha, E, Odedere, O, Dosunmu, O, Tillya, R, Shabani, J, Cross, JH, Liaghati-Mobarhan, S, Chiume, M, Banda, G, Chalira, A, Wainaina, J, Gathara, D, Irimu, G, Adudans, S, James, F, Tongo, O, Ezeaka, VC, Msemo, G, Salim, N, Day, LT, Powell-Jackson, T, Chandna, J, Majamanda, M, Molyneux, EM, Oden, M, Richards-Kortum, R, Ohuma, EO, Paton, C, Hailegabriel, T, Gupta, G and Lawn, JE (2024). Health facility assessment of small and sick newborn care in low- and middle-income countries: systematic tool development and operationalisation with NEST360 and UNICEF. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.7111731.v1

2 January 2024

Oswald, W (2024). williameoswald/surveydesignr. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://github.com/williameoswald/surveydesignr

5 January 2024

Simms, V, Dziva Chikwari, C, Ferrand, R and Bandason, T (2024). Data for: "Differentiated HIV care cascade for youth in Zimbabwe". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003649.

9 January 2024

Higgins, M (2024). MatthewHiggins2017/PanPlasmodiumRPALFManuscript. [Data Collection]. Github. https://github.com/MatthewHiggins2017/PanPlasmodiumRPALFManuscript

Lambert, J, Gruson, H, Kucharski, AJ and Tamayo Cuartero, C (2024). epiverse-trace/simulist. [Data Collection]. Github. https://github.com/epiverse-trace/simulist

17 January 2024

Hodcroft, E, Zuber, M, Harkins, E, Neher, R, Wagner, C, Huddleston, J, Bedford, T, Moncla, LH, Hadfield, J, fzhang12, Sibley, T, Saleh, A, falnaji, Xueying, aniafijarczyk, Nezu, T, Müller, NF, Gall, A, Brito, A, Villabona Arenas, CJ, Bell, S, Kozyreva, V, Eren, Puller, V, Han, AX, irak, Rimaz, H, Ghafari, M, Sato, T and Lee, H (2024). emmahodcroft/ncov_2021: Release for Geneva Manuscript. [Data Collection]. Zenodo, London, United Kingdom. https://doi.org/10.5281/zenodo.10524847

Tazare, J and Henderson, A (2024). johntaz/nhs-opt-outs. [Data Collection]. Github. https://github.com/johntaz/nhs-opt-outs

23 January 2024

Abbas, KM and Vaccine Impact (2024). vaccine-impact/hpv_vaccine_equity. [Data Collection]. Github. https://github.com/vaccine-impact/hpv_vaccine_equity

29 January 2024

Waterlow, N and Knight, G (2024). gwenknight/ecdc_data_age_sex. [Data Collection]. Github. https://github.com/gwenknight/ecdc_data_age_sex

31 January 2024

Schultze, A and Tazare, J (2024). ehr-lshtm/code-sharing: published_article. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.8277267

9 February 2024

Goodfellow, L (2024). lucy-gf/imd-covid. [Data Collection]. Github. https://github.com/lucy-gf/imd-covid

21 February 2024

Costello, R and Henderson, A (2024). opensafely/covid_collateral_imd. [Data Collection]. Github. https://github.com/opensafely/covid_collateral_imd

23 February 2024

Lambert, S (2024). Strobe statement for: "Health-related quality of life of adults with cutaneous leishmaniasis at ALERT Hospital, Addis Ababa, Ethiopia". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003787.

Abbas, KM, Vaccine Impact and Hadley, L (2024). lshtm-vimc/prime. [Data Collection]. Github. https://github.com/lshtm-vimc/prime

4 March 2024

Brady, OJ (2024). obrady/CATI_Vietnam. [Data Collection]. Github. https://github.com/obrady/CATI_Vietnam

12 March 2024

Cerdeira, L, Sharma, V, Maranga, M, Carey, M, Dyson, ZA and Holt, KE (2024). amrnet/amrnet: AMRnet-v1.0. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10810218

27 March 2024

Mclean, E (2024). Malawi Epidemiology and Intervention Research Unit Non-Communicable Disease Survey data, 2013-2017 - author-written Stata code. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10887119

28 March 2024

Messina, D, Paoletti, O, Belitser, S, Gini, RM, Limoncella, G and Schultze, A (2024). VAC4EU/CVM: WP4 SCCS sensitivity code for publication/Zenodo. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.8272057

Sherratt, K and Funk, S (2024). epiforecasts/multi-model-information: Publication release. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10891376

9 April 2024

Gupte, P, Van Leeuwen, E, Kucharski, A, Eggo, RM, Gruson, H, Jombart, T, Valle Campos, A and Lambert, JW (2024). finalsize: Calculate the Final Size of an Epidemic. [Data Collection]. Comprehensive R Archive Network. https://cran.r-project.org/package=finalsize

17 April 2024

Cook, S (2024). NHLI-Respiratory-Epi/Alcohol_use_disorder_codelist. [Data Collection]. Github. https://github.com/NHLI-Respiratory-Epi/Alcohol_use_disorder_codelist

19 April 2024

De la cruz Libardi, A (2024). ehm-lab/hipmapp: Health Impact Projections Shiny App and Data. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10998153

30 April 2024

Domínguez, NT, Gruson, H, Pavlich-Mariscal, J, Gomez, G, Gámez López, ME, Cucunubá, ZM, tracelac, Hartgerink, C, Azam, J and ben18785 (2024). epiverse-trace/serofoi. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.11095007

9 May 2024

Rubio, FJ, Quaresma, M and Rachet, B (2024). ManuelaQuaresma/CSI. [Data Collection]. Github. https://github.com/ManuelaQuaresma/CSI

17 May 2024

Masselot, P (2024). PierreMasselot/Paper--2022--Epidemiology--PM2.5_components: Code for published paper. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.11210102

11 June 2024

Hartgerink, C, Lambert, JW, Mané, K, Gruson, H and Ahadzie, B (2024). numberize: Convert Words to Numbers in Multiple Languages. [Data Collection]. Comprehensive R Archive Network. https://cran.r-project.org/package=numberize

12 June 2024

Gupte, PR, Kucharski, AJ, Russell, TW, Lambert, JW, Gruson, H, Taylor, T, Azam, JM, Degoot, AM and Funk, S (2024). cfr: Estimate Disease Severity and Case Ascertainment. [Data Collection]. Comprehensive R Archive Network. https://cran.r-project.org/package=cfr

17 June 2024

Mané, K, Jombart, T, Bah, B, Ahadzie, B, Mohammed, N, Degoot, AM, Gruson, H, Gupte, PR, Azam, JM, Lambert, JW and Hartgerink, C (2024). cleanepi: Clean and Standardize Epidemiological Data. [Data Collection]. Comprehensive R Archive Network. https://cran.r-project.org/package=cleanepi

21 June 2024

Langston, H, Fortes Francisco, A, Doidge, C, Roberts, CH, Khan, AA, Jayawardhana, S, Taylor, MC, Kelly, JM and Lewis, MD (2024). Source files for 3D printed hamster anaesthesia delivery nosecone. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0012278.s002

26 June 2024

Momanyi, RO and Mugotitsa, B (2024). APHRC-DSE/INSPIRE-Mental-Health-Project_Landscape_Analysis: R Source code. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.12542523

28 June 2024

Judge, C (2024). ciarajudge/EpiFusion. [Data Collection]. Github. https://github.com/ciarajudge/EpiFusion

Judge, C (2024). ciarajudge/EpiFusion_PublicationRepo. [Data Collection]. Github. https://github.com/ciarajudge/EpiFusion_PublicationRepo

8 July 2024

Sanderson, T (2024). theosanderson/hospitalmedicines. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10493050

9 July 2024

Robert, A and Suffel, AM (2024). alxsrobert/measles_england_sir. [Data Collection]. Github. https://github.com/alxsrobert/measles_england_sir

11 July 2024

j-darocha (2024). WCSCourses/Polygenic_Risk_Scores: 2024 Africa Iteration. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.12667214

Holt, KE and Hawkey, J (2024). interpretAMR/AMRrules. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.12724318

17 July 2024

Lambert, JW, Bilderbeek, R and Santos Neves, P (2024). DAISIEmainland. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.6502547

18 July 2024

Mistry, M and Gasparrini, A (2024). gasparrini/UK-HWfcast. [Data Collection]. GitHub. https://github.com/gasparrini/UK-HWfcast

Russell, TW and Kucharski, AJ (2024). thimotei/legacy_nAb_kinetics. [Data Collection]. Github. https://github.com/thimotei/legacy_nAb_kinetics/

19 July 2024

Baptiste, PJ (2024). ParisBap/TTE_ONTARGET. [Data Collection]. Github. https://github.com/ParisBap/TTE_ONTARGET/

24 July 2024

Moirano, G, Fletcher, C, Semenza, JC and Lowe, R (2024). ghr/wnv_casecrossover. [Data Collection]. Gitlab. https://earth.bsc.es/gitlab/ghr/wnv_casecrossover

4 August 2024

Krauer, F (2024). fkrauer/RSV-VACC-DE. [Data Collection]. Github. https://github.com/fkrauer/RSV-VACC-DE

6 August 2024

Moss, S (2024). sophiemoss/anopheles_popgen. [Data Collection]. Github. https://github.com/sophiemoss/anopheles_popgen

9 August 2024

Goto, R (2024). R markdown for: "Estimating Food Consumption, Micronutrient Intake, and the Contribution of Large-Scale Food Fortification to Micronutrient Adequacy in Tanzania". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00004293.

13 August 2024

Natukunda, A and Muchene, LK (2024). Additional file 2 of Unsupervised title and abstract screening for systematic review: a retrospective case-study using topic modelling methodology. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.26558963.v1

Tackney, MS, Morris, T, White, I, Leyrat, C, Diaz-Ordaz, K and Williamson, E (2024). A comparison of covariate adjustment approaches under model misspecification in individually randomized trials. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.6587959.v1

19 August 2024

International Centre for Eye Health (2024). Rapid Assessment of Avoidable Blindness Report: Tanzania, Kilimanjaro (2022). [Data Collection]. London School of Hygiene & Tropical Medicine RAAB Repository. https://doi.org/10.17037/RAABREPORT.7ba2a0bb-4d30-4672-9432-f100a910d6cb.

26 August 2024

SLGiHub (2024). SLGiHub/FIEBRE_Adult_severity_scores: FIEBRE Adult Severity Scores. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.13376619

4 September 2024

Ryan Wick, Holt, KE, marlam89, kelwyres, Maranga, M, Petit III, RA, da Silva, AG, Deveaud, E, Lampa, S and Stanton, T (2024). klebgenomics/Kleborate: v3.0.0. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.13683348

23 September 2024

Abbott, S, Hellewell, J, Sherratt, K, Gostic, K, Hickson, J, Badr, HS, DeWitt, M, Azam, JM, EpiForecasts and Funk, S (2024). EpiNow2: Estimate Real-Time Case Counts and Time-Varying Epidemiological Parameters. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.13828203

24 September 2024

Matthewman, J (2024). julianmatthewman/Eczema_outcomes_public. [Data Collection]. Github. https://github.com/julianmatthewman/Eczema_outcomes_public/

30 September 2024

Holt, KE, Dyson, ZA, Hawkey, J and flashton2003 (2024). typhoidgenomics/genotyphi. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4707613

October 2024

Sanderson, T, Kramer, A, Goater, R, Hinrichs, A, L'YI, S, Roemer, C, Kwon, S and Vargha, K (2024). theosanderson/taxonium. [Data Collection]. Github. https://github.com/theosanderson/taxonium

14 October 2024

Nightingale, E (2024). esnightingale/vl-disaggregation. [Data Collection]. Github. https://github.com/esnightingale/vl-disaggregation

21 October 2024

Aksamentov, I, Neher, R, Roemer, C, mt-gitlocalize, Parker, AA, Lin, V, Sibley, T, Negrón, DA, Nextstrain bot, Anderson, JS, Snyk bot, Hodcroft, E, Actat, Rubinsteyn, A, Grüning, B, Tegomoh, B, Chen, C, Bottoms, C, Maguire, F, Huddleston, J, Lee, J, Sanderson, T and Harkins, E (2024). nextstrain/nextclade. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5731501

29 October 2024

Jensen, HT (2024). Model for "Estimating the health and macroeconomic burdens of tuberculosis in India, 2021-2040". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00004409.

4 November 2024

Pung, R, Kucharski, AJ, Firth, J, Russell, TW, Rogers, T and Lee, V (2024). rachaelpung/temporal_networks. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.14032212

11 November 2024

Juel, R, Dasaraju, A and Newbould, R (2024). Food Environment Evidence Directory (FEED) Map. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00004334.

Masselot, P and Gasparrini, A (2024). PierreMasselot/RiskExtrapolation. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.14076410

13 November 2024

Roberts, C, Stott, C and McNulty, T (2024). Keppel - Biometrics Solutions for ODK Ecosystem Tools. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00004433.

14 November 2024

Clark, R (2024). lshtm-tbmg/tbmod-pub-undernutrition. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.14160777

20 November 2024

International Centre for Eye Health (2024). Rapid Assessment of Avoidable Blindness Report: Malaysia, Eastern Zone (2023). [Data Collection]. London School of Hygiene & Tropical Medicine RAAB Repository. https://doi.org/10.17037/RAABREPORT.e33de761-adce-4809-acb1-4bebe18ec108.

3 December 2024

Segovia De La Revilla, L, dzvoti and Codd, T (2024). LuciaSegovia/FAO-fisheries. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.14265102

9 December 2024

Foster, N (2024). nicolacfoster/dcea.ana: ASCENT DCEA. [Data Collection]. Github. https://doi.org/10.5281/zenodo.14336227

12 December 2024

Lambert, JW (2024). joshwlambert/DAISIEprepExtra. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.6984486