Browse by Data capture method
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Project
Grant, A and Kielmann, K (2022). Qualitative and quantitative data for tuberculosis Infection prevention and control in South Africa (KwaZulu-Natal and Western Cape). [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom, South Africa. https://doi.org/10.17037/DATA.00002919.
Data Collection
International Centre for Eye Health (2024). Rapid Assessment of Avoidable Blindness Report: Malaysia, Eastern Zone (2023). [Data Collection]. London School of Hygiene & Tropical Medicine RAAB Repository. https://doi.org/10.17037/RAABREPORT.e33de761-adce-4809-acb1-4bebe18ec108.
Clark, R (2024). lshtm-tbmg/tbmod-pub-undernutrition. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.14160777
Roberts, C, Stott, C and McNulty, T (2024). Keppel - Biometrics Solutions for ODK Ecosystem Tools. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00004433.
Juel, R, Dasaraju, A and Newbould, R (2024). Food Environment Evidence Directory (FEED) Map. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00004334.
Masselot, P and Gasparrini, A (2024). PierreMasselot/RiskExtrapolation. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.14076410
Pung, R, Kucharski, AJ, Firth, J, Russell, TW, Rogers, T and Lee, V (2024). rachaelpung/temporal_networks. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.14032212
Jensen, HT (2024). Model for "Estimating the health and macroeconomic burdens of tuberculosis in India, 2021-2040". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00004409.
Aksamentov, I, Neher, R, Roemer, C, mt-gitlocalize, Parker, AA, Lin, V, Sibley, T, Negrón, DA, Nextstrain bot, Anderson, JS, Snyk bot, Hodcroft, E, Actat, Rubinsteyn, A, Grüning, B, Tegomoh, B, Chen, C, Bottoms, C, Maguire, F, Huddleston, J, Lee, J, Sanderson, T and Harkins, E (2024). nextstrain/nextclade. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5731501
Nightingale, E (2024). esnightingale/vl-disaggregation. [Data Collection]. Github. https://github.com/esnightingale/vl-disaggregation
Sanderson, T, Kramer, A, Goater, R, Hinrichs, A, L'YI, S, Roemer, C, Kwon, S and Vargha, K (2024). theosanderson/taxonium. [Data Collection]. Github. https://github.com/theosanderson/taxonium
Holt, KE, Dyson, ZA, Hawkey, J and flashton2003 (2024). typhoidgenomics/genotyphi. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4707613
Matthewman, J (2024). julianmatthewman/Eczema_outcomes_public. [Data Collection]. Github. https://github.com/julianmatthewman/Eczema_outcomes_public/
Abbott, S, Hellewell, J, Sherratt, K, Gostic, K, Hickson, J, Badr, HS, DeWitt, M, Azam, JM, EpiForecasts and Funk, S (2024). EpiNow2: Estimate Real-Time Case Counts and Time-Varying Epidemiological Parameters. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.13828203
Ryan Wick, Holt, KE, marlam89, kelwyres, Maranga, M, Petit III, RA, da Silva, AG, Deveaud, E, Lampa, S and Stanton, T (2024). klebgenomics/Kleborate: v3.0.0. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.13683348
SLGiHub (2024). SLGiHub/FIEBRE_Adult_severity_scores: FIEBRE Adult Severity Scores. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.13376619
International Centre for Eye Health (2024). Rapid Assessment of Avoidable Blindness Report: Tanzania, Kilimanjaro (2022). [Data Collection]. London School of Hygiene & Tropical Medicine RAAB Repository. https://doi.org/10.17037/RAABREPORT.7ba2a0bb-4d30-4672-9432-f100a910d6cb.
Natukunda, A and Muchene, LK (2024). Additional file 2 of Unsupervised title and abstract screening for systematic review: a retrospective case-study using topic modelling methodology. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.26558963.v1
Tackney, MS, Morris, T, White, I, Leyrat, C, Diaz-Ordaz, K and Williamson, E (2024). A comparison of covariate adjustment approaches under model misspecification in individually randomized trials. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.6587959.v1
Goto, R (2024). R markdown for: "Estimating Food Consumption, Micronutrient Intake, and the Contribution of Large-Scale Food Fortification to Micronutrient Adequacy in Tanzania". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00004293.
Moss, S (2024). sophiemoss/anopheles_popgen. [Data Collection]. Github. https://github.com/sophiemoss/anopheles_popgen
Krauer, F (2024). fkrauer/RSV-VACC-DE. [Data Collection]. Github. https://github.com/fkrauer/RSV-VACC-DE
Baptiste, PJ (2024). ParisBap/TTE_ONTARGET. [Data Collection]. Github. https://github.com/ParisBap/TTE_ONTARGET/
Mistry, M and Gasparrini, A (2024). gasparrini/UK-HWfcast. [Data Collection]. GitHub. https://github.com/gasparrini/UK-HWfcast
Russell, TW and Kucharski, AJ (2024). thimotei/legacy_nAb_kinetics. [Data Collection]. Github. https://github.com/thimotei/legacy_nAb_kinetics/
Lambert, JW, Bilderbeek, R and Santos Neves, P (2024). DAISIEmainland. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.6502547
j-darocha (2024). WCSCourses/Polygenic_Risk_Scores: 2024 Africa Iteration. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.12667214
Holt, KE and Hawkey, J (2024). interpretAMR/AMRrules. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.12724318
Robert, A and Suffel, AM (2024). alxsrobert/measles_england_sir. [Data Collection]. Github. https://github.com/alxsrobert/measles_england_sir
Sanderson, T (2024). theosanderson/hospitalmedicines. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10493050
Judge, C (2024). ciarajudge/EpiFusion. [Data Collection]. Github. https://github.com/ciarajudge/EpiFusion
Judge, C (2024). ciarajudge/EpiFusion_PublicationRepo. [Data Collection]. Github. https://github.com/ciarajudge/EpiFusion_PublicationRepo
Langston, H, Fortes Francisco, A, Doidge, C, Roberts, CH, Khan, AA, Jayawardhana, S, Taylor, MC, Kelly, JM and Lewis, MD (2024). Source files for 3D printed hamster anaesthesia delivery nosecone. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0012278.s002
Mané, K, Jombart, T, Bah, B, Ahadzie, B, Mohammed, N, Degoot, AM, Gruson, H, Gupte, PR, Azam, JM, Lambert, JW and Hartgerink, C (2024). cleanepi: Clean and Standardize Epidemiological Data. [Data Collection]. Comprehensive R Archive Network. https://cran.r-project.org/package=cleanepi
Gupte, PR, Kucharski, AJ, Russell, TW, Lambert, JW, Gruson, H, Taylor, T, Azam, JM, Degoot, AM and Funk, S (2024). cfr: Estimate Disease Severity and Case Ascertainment. [Data Collection]. Comprehensive R Archive Network. https://cran.r-project.org/package=cfr
Hartgerink, C, Lambert, JW, Mané, K, Gruson, H and Ahadzie, B (2024). numberize: Convert Words to Numbers in Multiple Languages. [Data Collection]. Comprehensive R Archive Network. https://cran.r-project.org/package=numberize
Masselot, P (2024). PierreMasselot/Paper--2022--Epidemiology--PM2.5_components: Code for published paper. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.11210102
Rubio, FJ, Quaresma, M and Rachet, B (2024). ManuelaQuaresma/CSI. [Data Collection]. Github. https://github.com/ManuelaQuaresma/CSI
Domínguez, NT, Gruson, H, Pavlich-Mariscal, J, Gomez, G, Gámez López, ME, Cucunubá, ZM, tracelac, Hartgerink, C, Azam, J and ben18785 (2024). epiverse-trace/serofoi. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.11095007
De la cruz Libardi, A (2024). ehm-lab/hipmapp: Health Impact Projections Shiny App and Data. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10998153
Cook, S (2024). NHLI-Respiratory-Epi/Alcohol_use_disorder_codelist. [Data Collection]. Github. https://github.com/NHLI-Respiratory-Epi/Alcohol_use_disorder_codelist
Gupte, P, Van Leeuwen, E, Kucharski, A, Eggo, RM, Gruson, H, Jombart, T, Valle Campos, A and Lambert, JW (2024). finalsize: Calculate the Final Size of an Epidemic. [Data Collection]. Comprehensive R Archive Network. https://cran.r-project.org/package=finalsize
Messina, D, Paoletti, O, Belitser, S, Gini, RM, Limoncella, G and Schultze, A (2024). VAC4EU/CVM: WP4 SCCS sensitivity code for publication/Zenodo. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.8272057
Sherratt, K and Funk, S (2024). epiforecasts/multi-model-information: Publication release. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10891376
Mclean, E (2024). Malawi Epidemiology and Intervention Research Unit Non-Communicable Disease Survey data, 2013-2017 - author-written Stata code. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10887119
Cerdeira, L, Sharma, V, Maranga, M, Carey, M, Dyson, ZA and Holt, KE (2024). amrnet/amrnet: AMRnet-v1.0. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10810218
Brady, OJ (2024). obrady/CATI_Vietnam. [Data Collection]. Github. https://github.com/obrady/CATI_Vietnam
Lambert, S (2024). Strobe statement for: "Health-related quality of life of adults with cutaneous leishmaniasis at ALERT Hospital, Addis Ababa, Ethiopia". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003787.
Abbas, KM, Vaccine Impact and Hadley, L (2024). lshtm-vimc/prime. [Data Collection]. Github. https://github.com/lshtm-vimc/prime
Costello, R and Henderson, A (2024). opensafely/covid_collateral_imd. [Data Collection]. Github. https://github.com/opensafely/covid_collateral_imd
Goodfellow, L (2024). lucy-gf/imd-covid. [Data Collection]. Github. https://github.com/lucy-gf/imd-covid
Schultze, A and Tazare, J (2024). ehr-lshtm/code-sharing: published_article. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.8277267
Waterlow, N and Knight, G (2024). gwenknight/ecdc_data_age_sex. [Data Collection]. Github. https://github.com/gwenknight/ecdc_data_age_sex
Abbas, KM and Vaccine Impact (2024). vaccine-impact/hpv_vaccine_equity. [Data Collection]. Github. https://github.com/vaccine-impact/hpv_vaccine_equity
Hodcroft, E, Zuber, M, Harkins, E, Neher, R, Wagner, C, Huddleston, J, Bedford, T, Moncla, LH, Hadfield, J, fzhang12, Sibley, T, Saleh, A, falnaji, Xueying, aniafijarczyk, Nezu, T, Müller, NF, Gall, A, Brito, A, Villabona Arenas, CJ, Bell, S, Kozyreva, V, Eren, Puller, V, Han, AX, irak, Rimaz, H, Ghafari, M, Sato, T and Lee, H (2024). emmahodcroft/ncov_2021: Release for Geneva Manuscript. [Data Collection]. Zenodo, London, United Kingdom. https://doi.org/10.5281/zenodo.10524847
Tazare, J and Henderson, A (2024). johntaz/nhs-opt-outs. [Data Collection]. Github. https://github.com/johntaz/nhs-opt-outs
Lambert, J, Gruson, H, Kucharski, AJ and Tamayo Cuartero, C (2024). epiverse-trace/simulist. [Data Collection]. Github. https://github.com/epiverse-trace/simulist
Simms, V, Dziva Chikwari, C, Ferrand, R and Bandason, T (2024). Data for: "Differentiated HIV care cascade for youth in Zimbabwe". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003649.
Oswald, W (2024). williameoswald/surveydesignr. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://github.com/williameoswald/surveydesignr
Penzias, RE, Bohne, C, Ngwala, SK, Zimba, E, Lufesi, N, Rashid, E, Gicheha, E, Odedere, O, Dosunmu, O, Tillya, R, Shabani, J, Cross, JH, Liaghati-Mobarhan, S, Chiume, M, Banda, G, Chalira, A, Wainaina, J, Gathara, D, Irimu, G, Adudans, S, James, F, Tongo, O, Ezeaka, VC, Msemo, G, Salim, N, Day, LT, Powell-Jackson, T, Chandna, J, Majamanda, M, Molyneux, EM, Oden, M, Richards-Kortum, R, Ohuma, EO, Paton, C, Hailegabriel, T, Gupta, G and Lawn, JE (2024). Health facility assessment of small and sick newborn care in low- and middle-income countries: systematic tool development and operationalisation with NEST360 and UNICEF. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.7111731.v1
Greener, R (2023). 0xr0bert/ubereats-scraper. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.6962078
London School of Hygiene & Tropical Medicine (2023). Whole-Genome Sequencing of Chlamydia trachomatis Strains B/HAR36 and B/Tunis864. [Data Collection]. NCBI Bioproject. https://www.ncbi.nlm.nih.gov/bioproject/1051460
Emery, JC, Dodd, PJ, Banu, S, Frascella, B, Garden, FL, Horton, KC, Hossain, S, Law, I, van Leth, F, Marks, GB, Nguyen, HB, Nguyen, HV, Onozaki, I, Quelapio, MID, Richards, AS, Shaikh, N, Tiemersma, EW, White, RG, Zaman, K, Cobelens, F and Houben, RM (2023). epidemery/subclinical_transmission. [Data Collection]. GitHub. https://github.com/epidemery/subclinical_transmission
Pearson, CAB, Hladish, T, Pillai, AN and Chao, D (2023). tjhladish/dengue-abm. [Data Collection]. Github. https://github.com/tjhladish/dengue-abm
Simons, D (2023). DidDrog11/data_for_gbif: Final version for Gigabyte. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7703228
Sherratt, K, Abbott, S, Carnegie, A and Liu, Y (2023). Improving modelling for epidemic responses: reflections. [Data Collection]. Open Science Framework. https://doi.org/10.17605/OSF.IO/4JNCB
Abbott, S, Russell, TW, Hellewell, J and Kucharski, AJ (2023). thimotei/legacy_ct_modelling: Final version. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10223417
Riffe, T, Acosta, E, Kamal, M, Donzowa, J, mskniffka, Dudel, C, Cimentada, J, Alburez, D, aishwaryamuralikrishnan, Aburto, JM, Pascariu, MD, Del Fava, E and Ribeiro, F (2023). timriffe/covid_age. [Data Collection]. Github. https://github.com/timriffe/covid_age
Abbott, S, Hellewell, J, Lucas, T, Funk, S and Gimma, A (2023). epiforecasts/ringbp. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3749529
Quevedo, DS, Gupte, P, Gomez, G, Gruson, H, Hartgerink, C, tracelac and Cucunubá, ZM (2023). epiverse-trace/vaccineff: vaccineff 0.0.1. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.11449783
Gibb, R (2023). rorygibb/dengue_vietnam_ms: v1.0.0: Code base for Nature Communications MS. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10159288
Namulondo, J, Nyangiri, OA, Kimuda, MP, Nambala, P, Nassuuna, J, Egesa, M, Nerima, B, Biryomumaisho, S, Mugasa, CM, Nabukenya, I, Kato, D, Elliott, A, Noyes, H, Tweyongyere, R, Matovu, E and Mulindwa, J (2023). RNA Sequence data analysis using DESeq2 pipeline. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0011455.s009
Graham, S (2023). grahams99/Health-seeking-behaviour. [Data Collection]. Github. https://github.com/grahams99/Health-seeking-behaviour
PANGEA-HIV Consortium (2023). PANGEA-HIV/PANGEA-Sequences: v1.0.0. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10075814
Blom, I (2023). Annexes to: A Systematic Review to Identify the Effectiveness of Greenhouse Gas Mitigation Interventions for Healthcare Systems in Low- and Middle-Income Countries. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003678.
Jung, S, Miura, F, Endo, A and Murayama, H (2023). SungmokJung/mpox_global: Initial release. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10056592
Etienne, RS, Valente, L, Phillimore, AB, Haegeman, B, Lambert, JW, Santos Neves, P, Xie, S, Bilderbeek, RJ, Hildenbrandt, H, Hauffe, T, Laudanno, G, Kristensen, N and Scherrer, R (2023). DAISIE: Dynamical Assembly of Islands by Speciation, Immigration and Extinction. [Data Collection]. Comprehensive R Archive Network. https://cran.r-project.org/package=DAISIE
Pearson, CAB and Hladish, T (2023). tjhladish/AbcSmc. [Data Collection]. Github. https://github.com/tjhladish/AbcSmc
Zheng, B and lshbz1 (2023). opensafely/Paxlovid-and-sotrovimab. [Data Collection]. Github. https://github.com/opensafely/Paxlovid-and-sotrovimab
Pearson, CAB, Thompson, S, Van Zandvoort, K, Eggo, RM and Jarvis, CI (2023). cmmid/covidm_reports: HEA Snapshot. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7741616
Lambert, J, Gruson, H, Kucharski, AJ, Gupte, P, Salmon, M, Campos, AV and Monticone, P (2023). epiverse-trace/epiparameter. [Data Collection]. Github. https://github.com/epiverse-trace/epiparameter/
Wang, L (2023). linfeng-wang/GMM4TB. [Data Collection]. Github. https://github.com/linfeng-wang/GMM4TB
Waterlow, N (2023). NaomiWaterlow/markov_model: V1.0.0. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.8382636
Leclerc, QJ (2023). qleclerc/phage_antibiotic_dynamics. [Data Collection]. Github.
Knight, GM, Waterlow, N, Wildfire, J and Clements, AJ (2023). aj-clements/Vivli-AMR-KG. [Data Collection]. Github. https://github.com/aj-clements/Vivli-AMR-KG/
Garcia, KKS, Soremekun, S, Bottomley, C, Abrahão, AA, de Miranda, CB, Drakeley, C, Ramalho, WM and Siqueira, AM (2023). Additional file 3 of Assessing the impact of the “malaria supporters project” intervention to malaria control in the Brazilian Amazon: an interrupted time-series analysis. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.24151176.v1
Cerdeira, L, Dyson, ZA and Holt, KE (2023). typhoidgenomics/TyphiNET: New release. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.5281/zenodo.5338903
International Centre for Eye Health (2023). Rapid Assessment of Avoidable Blindness Study Protocol Template. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/PUBS.00003744.
Burkhart Colorado, AS, Lazzaro, A, Preston, C, Nusbacher, N, Boyd, K, Fiorillo, S, Martin, C, Siebert, J and Campbell, T (2023). Differential effects of antiretroviral treatment on immunity and gut microbiome composition in people living with HIV in rural versus urban Zimbabwe. [Data Collection]. Zenodo. https://zenodo.org/records/8346401
Gonçalves, BP (2023). BronnerG/Hosp_Vacc_analysis: v1. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.8252908
Wariri, O (2023). drwariri/Mapping-the-timeliness-of-routine-childhood-vaccination-in-The-Gambia-a-spatial-modelling-study. [Data Collection]. Github. https://github.com/drwariri/Mapping-the-timeliness-of-routine-childhood-vaccination-in-The-Gambia-a-spatial-modelling-study
Prem, K (2023). kieshaprem/hpv-1-dose: First release of the HPV 1-dose global repository. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.8133734
Checchi, F (2023). francescochecchi/yem_diaspora_mortality. [Data Collection]. Github. https://github.com/francescochecchi/yem_diaspora_mortality
Graham, S (2023). grahams99/Enhanced_surveillance_questionnaire. [Data Collection]. Github. https://github.com/grahams99/Enhanced_surveillance_questionnaire
Soremekun, S, Källander, K, Lingam, R, Branco, AC, Batura, N, Strachan, DL, Muiambo, A, Salomao, N, Condoane, J, Benhane, F, Kasteng, F, Vassall, A, Hill, Z, ten Asbroek, G, Meek, S, Tibenderana, J and Kirkwood, B (2023). Restricted Randomisation Procedure and codes–inSCALE Mozambique. [Data Collection]. PLOS Digital Health. https://doi.org/10.1371/journal.pdig.0000235.s003
Piper, J, Ntozini, R and Prendergast, A (2023). SHINE 7-year Follow-up. [Data Collection]. Open Science Framework. https://doi.org/10.17605/OSF.IO/PHV83
Simons, D (2023). DidDrog11/arenavirus_hantavirus_app. [Data Collection]. Github. https://github.com/DidDrog11/arenavirus_hantavirus_app
Bosse, N, Bracher, J, Abbott, S and Funk, S (2023). epiforecasts/transformation-forecast-evaluation. [Data Collection]. Github. https://github.com/epiforecasts/transformation-forecast-evaluation
Ekoriko, P (2023). lshtm-public/rds-ui. [Data Collection]. Bitbucket. https://bitbucket.org/lshtm-public/rds-ui
Leung, WTM (2023). wtm-leung/Network-modelling-review: Network modelling review v1.0.0. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7883258
Lotto Batista, M, Rees, EM, Gómez, A, López, S, Castell, S, Kucharski, AJ, Ghozzi, S, Müller, GV and Lowe, R (2023). Data and R-code to accompany 'Towards an Early Warning System for Leptospirosis in North-Eastern Argentina'. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7865638
Mclean, E (2023). Local and long-distance migration among young people in rural Malawi: importance of age, sex and family (author-writter code). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7797356
Emes, ET and Naylor, N (2023). Trescovia/AHHME. [Data Collection]. Github. https://github.com/Trescovia/AHHME
Abbott, S (2023). seabbs/badtobetter: Initial release. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7799448
Chapman, LA, Aubry, M, Maset, N, Russell, T, Knock, ES, Lees, JA, Mallet, H, Cao-Lormeau, V and Kucharski, AJ (2023). Impact of vaccinations, boosters and lockdowns on COVID-19 waves in French Polynesia. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7790839
Van Zandvoort, K and Checchi, F (2023). Shielding individuals at high risk of COVID-19: a micro-simulation study. Model and analyses. [Data Collection]. Github. https://doi.org/10.5281/zenodo.7740538
Keddie, SH (2023). shk313/Evaluating-sensitivity-and-specificity-from-LCM-a-simulation-study. [Data Collection]. Github. https://github.com/shk313/Evaluating-sensitivity-and-specificity-from-LCM-a-simulation-study
Leurent, B (2023). SADD synthetic cost-effectiveness dataset. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.19802632.v4
Gasparrini, A (2023). gasparrini/MCC-SO2. [Data Collection]. Github. https://github.com/gasparrini/MCC-SO2
Sanderson, T, Bileschi, M and Belanger, D (2023). google-research/proteinfer. [Data Collection]. Github. https://github.com/google-research/proteinfer
Suffel, AM (2023). Eyedeet/vaccine_methods_ehr_public/. [Data Collection]. Github. https://github.com/Eyedeet/vaccine_methods_ehr_public/
Napier, G (2023). GaryNapier/spolpred. [Data Collection]. Github. https://github.com/GaryNapier/spolpred
Giannini, F and Abbas, K (2023). fionagi/GASImpactModel. [Data Collection]. GitHub. https://github.com/fionagi/GASImpactModel
Mulla, S, Ludlam, AR, Elragig, A, Slack, C, Balklava, Z, Stich, M and Cheong, A (2023). Supplementary material from "A biphasic model of lifespan in nematode Caenorhabditis elegans worm". [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.6403443.v2
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Clark, R, Mukandavire, C, Weerasuriya, C, Bakker, R and White, RG (2022). TBVAX Model. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.6421372
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Oliphant, N, Ray, N, Curtis, A, Musa, E, Sesay, M, Kandeh, J, Kamara, A, Chimoun, EFT, Jackson, D and Doherty, T (2022). Supplementary appendix 1b of Oliphant NP, Ray N, Curtis A et al. Optimising scale and deployment of community health workers in Sierra Leone: a geospatial analysis. 2022. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5712134
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Reichenberger, V (2022). Participatory Visual Methods with caregivers of children with Congenital Zika Syndrome in Colombia: A case study. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002745.
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Carvalho-Pereira, T, Eyre, MT, Zeppelini, CG, Espirito Santo, VF, Santiago, DC, Santana, R, Palma, F, Reis, M, Lustosa, R, Khalil, H, Diggle, PJ, Giorgi, E, Costa, F and Begon, M (2022). Dataset used in the assessment of the article "Basic urban services fail to neutralise environmental determinants of 'rattiness', a composite metric of rat abundance". [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5920038
Schwarzer, G, Carpenter, JR and Rücker, G (2022). metasens: Statistical Methods for Sensitivity Analysis in Meta-Analysis. [Data Collection]. The Comprehensive R Archive Network.
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Wick, RR and Holt, KE (2022). Genome details for the simulated-read tests. [Data Collection]. PLOS Computational Biology. https://doi.org/10.1371/journal.pcbi.1009802.s015
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Stelle, I, Bah, M, Silverio, SA, Verhoef, H, Comma, E, Prentice, AM, Moore, SE and Cerami, C (2021). Extended Data: Iron supplementation of breastfed Gambian infants from 6 weeks to 6 months of age: Protocol for a randomised controlled trial. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.17206319.v1
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Strongman, H and Carreira, H (2021). STATA Do files for "Factors associated with excess mortality in the first wave of COVID-19 pandemic in the UK: a cohort analysis using the Clinical Practice Research Databank". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002560.
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Landau, W, Landau, W, Bond-Lamberty, B, Strasiotto, M, McBain, M, Müller, K, Mahr, T, Hughes, E, Ross, N, Bell, K, Ingerson, S, Aden-Buie, G, Gomolka, M, Knoblauch, N, Albers, S, brendanf, evalparse, Denney, B, Muir, C, Barrett, M, Krug, RM, Kehayas, V, Schratz, P, Zhao, B, Hlynur, Gruson, H, Jasper, Ooms, J, Walthert, L and Dray, M (2021). ropensci/drake. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.1160696
Mayerová, D and Abbas, KM (2021). d-mayerova/Vaccine_confidence_Albania. [Data Collection]. Github. https://github.com/d-mayerova/Vaccine_confidence_Albania
Robert, A, Funk, S, Kucharski, AJ and Jombart, T (2021). o2geosocial: Reconstruction of Transmission Chains from Surveillance Data. [Data Collection]. Comprehensive R Archive Network. https://cran.r-project.org/package=o2geosocial
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Millington, J, Okpako, O and Herrick, C (2021). Analysis of non-communicable disease reports contributing to UN high-level meeting process (2000-2020). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5236552
Pishgar, F, Greifer, N, Leyrat, C and Stuart, E (2021). MatchThem: Matching and Weighting Multiply Imputed Datasets. [Data Collection]. The Comprehensive R Archive Network. https://cran.r-project.org/package=MatchThem
Wang, SY, Stark, A, Evan Ray, Bosse, N, Reich, NG, Sherratt, K, Shah, A, Wattanachit, N, Khoale1096, Huang, YD, Gerding, A, Gruson, H, Cramer, E, Shandross, L, Abbott, S and Funk, S (2021). reichlab/covidHubUtils. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5207939
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Drake, C, Hernandez, A, Liu, Y, Schwartz, AH and Sundaram, M (2021). yangclaraliu/armslist_scraping. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5185707
Aburto, JM, Schöley, J, Kashnitsky, I, Knowles, I, Zhang, L, Rahal, C, Missov, TI, Dowd, JB, Mills, MC and Kashyap, R (2021). Code to replicate "Quantifying impacts of the COVID-19 pandemic through life expectancy losses". [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4556982
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Davies, NG (2021). nicholasdavies/amr-competition-diversity: Full release for publication. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5116443
Davies, NG (2021). CSV-format data for: Increased mortality in community-tested cases of SARS-CoV-2 lineage B.1.1.7. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5105920
Charvat, H and Belot, A (2021). mexhaz: Mixed Effect Excess Hazard Models. [Data Collection]. The Comprehensive R Archive Network. https://cran.r-project.org/package=mexhaz
Courtin, E, Greener, R, Weiss, J, Ware, EB, Dowd, JB and Rehkopf, D (2021). Analysis for: The changing relationship between genetic risk and cognitive decline across birth cohorts. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4982053
Liu, Y, Sandmann, FG, Barnard, RC, Pearson, CA, CMMID Working-19 Working Group, Pastore, R, Pebody, R, Flasche, S and Jit, M (2021). Optimising health and economic impacts of COVID-19 vaccine rollout strategies in the WHO European Region. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4964148
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Dodds, C, Keogh, P, Bourne, A, McDaid, L, Squire, C, Weatherburn, P and Young, I (2021). Supplemental material for: The Long and Winding Road: Archiving and Re-Using Qualitative Data from 12 Research Projects Spanning 16 Years. [Data Collection]. SAGE Journals. https://doi.org/10.25384/SAGE.12489428.v1
Gimma, A, Wong, KL, Van Xandvoort, K, Jarvis, CI and Edmunds, WJ (2021). CoMix social contact data (UK). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4905745
Tackney, MS, Cook, DG, Stahl, D, Ismail, K, Williamson, E and Carpenter, J (2021). Additional file 1 of A framework for handling missing accelerometer outcome data in trials. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14738652.v1
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Shakur-Still, H, Arribas, M, Roberts, I, Chaudhri, R, Geer, A, Prowse, D, Lubeya, MK, Kayani, A, Javaid, K and Grassin Delyle, S (2021). WOMAN-PharmacoTXA Trial: Pharmacokinetics and pharmacodynamics of tranexamic acid in women having caesarean section birth - Extended data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002164.
Banterle, M, Zhao, Z, Bottolo, L, Richardson, S, Leoncio, W, Lewin, A, Zucknick, M and Zhao, Z (2021). BayesSUR: Bayesian Seemingly Unrelated Regression. [Data Collection]. The Comprehensive R Archive Network. https://cran.r-project.org/package=BayesSUR
Lindsay, S, Carrasco-Tenezaca, M, Jawara, M, Bradley, J, D'Alessandro, U, Jeffries, D, Pinder, M and Knudsen, J (2021). Supplementary data files & video for Carrasco-Tenezaca published in the Journal of the Royal Society Interface, 'The relationship between house height and mosquito house entry: an experimental study in rural Gambia. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14483475.v1
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Lewer, D, Padmanathan, P, Arfeen, MNU, Denaxas, S, Forbes, H, Gonzalez-Izquierdo, A and Hickman, M (2021). Healthcare use by people who use illicit opioids (HUPIO): development of a cohort based on electronic primary care records in England (extended data). [Data Collection]. University College London, London, United Kingdom. https://doi.org/10.5522/04/13253906.v5
Umemneku Chikere, CM, Wilson, KJ, Allen, AJ and Vale, L (2021). Additional file 2 of Comparative diagnostic accuracy studies with an imperfect reference standard – a comparison of correction methods. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14404144.v1
Suffel, AM (2021). Eyedeet/Systematic_review. [Data Collection]. Github. https://github.com/Eyedeet/Systematic_review/tree/main
Kelly-Hope, LA, Sanders, AM, Harding-Esch, E, Willems, J, Ahmed, F, Vincer, F and Hill, R (2021). Additional file 2 of Complex emergencies and the control and elimination of neglected tropical diseases in Africa: developing a practical approach for implementing safe and effective mapping and intervention strategies. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14355436.v1
McCreesh, N (2021). NickyMcC/WithinClinics. [Data Collection]. Github. https://github.com/NickyMcC/WithinClinics
Muzambi, R, Bhaskaran, K, Brayne, C, Chaturvedi, N, Smeeth, L and Warren-Gash, C (2021). ISAC Protocol 19_129 - Common infections and incident dementia: a historical cohort study using UK primary and secondary care data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002134.
Mendelsohn, SC, Fiore-Gartland, A, Penn-Nicholson, A, Mulenga, H, Kimbung, S, Borate, B, Hadley, K, Hikuam, C, Musvosvi, M, Bilek, N, Erasmus, M, Jaxa, L, Raphela, R, Nombida, O, Kaskar, M, Sumner, T, White, RG, Innes, C, Brumskine, W, Hiemstra, A, Malherbe, ST, Hassan-Moosa, R, Tameris, M, Walzl, G, Naidoo, K, Churchyard, G, Scriba, TJ and Hatherill, M (2021). Validation of Correlates of Risk of TB Disease in High Risk Populations (CORTIS-HR) Study: Public, subject-level RISK11 signature scores and metadata. [Data Collection]. University of Cape Town. https://doi.org/10.25375/uct.14176484.v1
Leurent, B and Cro, S (2021). CEmimix ADO file. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14308286.v2
Limbada, M, Ayles, H and Macleod, D (2021). A Comparison of Different Community Models of ART Delivery Amongst Stable HIV+ Patients in two Urban Settings in Zambia - Study Protocol. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002116.
LSHTM Library & Archives Service (2021). LSHTM Data Compass Procedures. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000002.
Holt, KE, Hawkey, J and Paranagama, K (2021). katholt/sonneityping: v20210201. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4609812
Colón-González, FJ, Sewe, MO, Tompkins, AM, Sjödin, H, Casallas, A, Rocklöv, J, Caminade, C and Lowe, R (2021). Projecting the risk of mosquito-borne diseases in a warmer and more urbanised world: a multi-model multi-scenario intercomparison study. [Data Collection]. OSF. https://doi.org/10.17605/OSF.IO/HPAEY
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Timaeus, I (2021). BugBunny/Pathways_to_Low_Fertility. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3627832
Pearson, CAB, Russell, TW and Kucharski, AJ (2021). cmmid/SA2UK. [Data Collection]. Github. https://github.com/cmmid/SA2UK
Oliphant, NP, Ray, N, Bensaid, K, Ouedraogo, A, Gali, AY, Habi, O, Maazou, I, Panciera, R, Muñiz, M, Manda, SO, Sy, Z, Jackson, D and Doherty, T (2021). Supplementary Appendix 1b of "Optimizing geographical accessibility to primary health care at community level in Niger: a geospatial analysis". [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4428176
Ling, S (2021). supingling/glycaemic-control. [Data Collection]. Github. https://github.com/supingling/glycaemic-control
Jaquiery, M and Schultze, A (2021). ReproducibiliTea LSHTM. [Data Collection]. OSF. https://osf.io/t27pc/
Gregson, J and Collier, T (2021). WINRATIOTEST: Stata module to calculate the unmatched Win Ratio for prioritised outcomes. [Data Collection]. Statistical Software Components, Boston College Department of Economics. https://ideas.repec.org/c/boc/bocode/s458984.html
Robert, A, Funk, S and Kucharski, AJ (2020). o2geosocial. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4317439
Colbourn, T, Waites, W, Manheim, D, Sturniolo, S, Kerr, CC, Panovska-Griffiths, J and Colbourn, G (2020). ptti/ptti: Modelling the health and economic impacts of different testing and tracing strategies for COVID-19 in the UK. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4298798
Tazare, J (2020). johntaz/COVID-Collateral. [Data Collection]. Github. https://github.com/johntaz/COVID-Collateral
Masselot, P (2020). PierreMasselot/Sedimentation_analysis. [Data Collection]. Github. https://github.com/PierreMasselot/Sedimentation_analysis
Stubbs, S (2020). Crimean-congo haemorrhagic fever virus detected in Rhipicephalus ticks feeding on cattle in an abattoir, Uganda. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4282998
Holt, KE, Lam, M and Wick, R (2020). Kleborate v2.0.0. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4923014
Lazarus, JV, Ratzan, S, Palayew, A, Billari, FC, Binagwaho, A, Kimball, S, Larson, HJ, Melegaro, A, Rabin, K, White, TM and El-Mohandes, A (2020). COVID-SCORE: A global survey to assess public perceptions of government responses to COVID-19 (COVID-SCORE-10). [Data Collection]. PLoS One. https://doi.org/10.1371/journal.pone.0240011
Endo, A and Kucharski, AJ (2020). akira-endo/COVID19_backwardtracing. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4050267
Thompson, J (2020). Comparison of small-sample standard-error corrections for generalised estimating equations in stepped wedge cluster randomised trials with a binary outcome: A simulation study. [Data Collection]. Zenodo. https://zenodo.org/10.5281/zenodo.4049828
Nash, S, Thompson, J and Leurent, B (2020). CLAN: Stata module to perform cluster-level analysis of cluster randomised trials. [Data Collection]. Statistical Software Components S458844, Boston College Department of Economics. https://ideas.repec.org/c/boc/bocode/s458844.html
Lopez-Bernal, J, Cummins, S and Gasparrini, A (2020). gasparrini/2017_lopezbernal_IJE_codedata. [Data Collection]. GitHub. http://www.ag-myresearch.com/2017_lopezbernal_ije.html
Lazo-Porras, M, Bernabe-Ortiz, A, Taype-Rondan, A, Gilman, RH, Malaga, G, Manrique, H, Neyra, L, Calderon, J, Pinto, M, Armstrong, DG, Montori, VM and Miranda, JJ (2020). Data for: "Foot thermometry with mHeath-based supplementation to prevent diabetic foot ulcers: A randomized controlled trial". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002334.
Sumner, T (2020). tomsumner/Latency_Model_Comparison_Public. [Data Collection]. Github. https://github.com/tomsumner/Latency_Model_Comparison_Public
Roberts, C and LSHTM Global Health Analytics Group (2020). LSHTM-ORK/OpenMakingKit. [Data Collection]. Github. https://github.com/LSHTM-ORK/OpenMakingKit/
Koltai, M (2020). sysbio-curie/exact-stoch-log-mod. [Data Collection]. GitHub. https://github.com/sysbio-curie/exact-stoch-log-mod
Roberts, C and LSHTM Global Health Analytics Group (2020). LSHTM-ORK/EDK_Automation_Tools. [Data Collection]. Github. https://github.com/LSHTM-ORK/EDK_Automation_Tools
Funk, S and Finger, F (2020). sbfnk/rbi.helpers. [Data Collection]. Github. https://github.com/sbfnk/rbi.helpers
Walker, T, Jeffries, CL, Yakob, L, White, M and Wilson, L (2020). Detection of a novel insect-specific flavivirus across ecologically diverse populations of Aedes aegypti on the Caribbean Island of Saint Lucia. [Data Collection]. Open Science Framework. https://doi.org/10.17605/OSF.IO/8UYB7
Abbott, S and Endo, A (2020). idmodelr: Infectious Disease Model Library and Utilities. [Data Collection]. The Comprehensive R Archive Network. https://cran.r-project.org/package=idmodelr
Abbott, S, Bekker-Nielsen Dunbar, M and Smith, A (2020). seabbs/getTBinR. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.2547405
Mansfield, KE, Nitsch, D, Smeeth, L, Iwagami, M, Johnston, R and Tomlinson, LA (2020). ISAC Protocol 17_197R: The effect of renin-angiotensin system inhibitors on haemoglobin. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/PUBS.04656899
Jombart, T, Kamvar, ZN, Collins, C, Luštrik, R, Beugin, M, Knaus, BJ, Solymos, P, Mikryukov, V, Schliep, K, Maié, T, Morkovsky, L, Ahmed, I, Cori, A, Calboli, F, Ewing, R, Michaud, F, DeCamp, R and Courtiol, A (2020). adegenet: Exploratory Analysis of Genetic and Genomic Data. [Data Collection]. The Comprehensive R Archive Network. https://cran.r-project.org/web/packages/adegenet/
Alwy Al-beity, F, Pembe, AB, Marrone, G, Baker, U and Hanson, C (2020). Anonymised data for: "Predictors of change of health workers’ knowledge and skills after the Helping Mothers Survive Bleeding after Birth (HMS BAB) in-facility training in Tanzania". [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0232983.s006
Shaver, J, Power, EA, Purzycki, BG, Shenk, MK, Bulbulia, JA, Sear, R, Sosis, R and Watts, J (2020). Religion, Cooperation, Fertility, and Child Outcomes. [Data Collection]. OSF. https://osf.io/4mt9y/
Tomlinson, LA, Iwagami, M, Bidulka, P and Wong, AY (2020). Supplementary data for “Comparisons of Staphylococcus aureus infection and other outcomes between users of angiotensin-converting-enzyme inhibitors and angiotensin II receptor blockers: lessons for COVID-19 from a nationwide cohort study”. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/PUBS.04656578.
Endo, A, Abbott, S, Kucharski, AJ and Funk, S (2020). akira-endo/COVID19_clustersize: Estimating the amount of superspreading using outbreak sizes of COVID-19 outside China. [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.3741744
Riffe, T and Aburto, JM (2020). timriffe/MacroShape. [Data Collection]. Github. https://github.com/timriffe/MacroShape
Hellewell, J (2020). cmmid/ringbp. [Data Collection]. Github. https://github.com/cmmid/ringbp
Willem, L, Xiao, L, Antillon, M, Bilcke, J, Jit, M and Beutels, P (2020). Multi-Country Model Application for RSV Cost-Effectiveness Policy (McMarcel). [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.3663447
von Wissmann, B, Gadama, L, Dube, Q, Membe-Gadama, G, Stock, S, Chodzaza, E, Masesa, C, Crampin, AC and Wood, R (2020). The DIPLOMATIC Collaboration, Work Package2_Coredata Set. [Data Collection]. OSF. https://osf.io/d3s7j/
Roberts, C (2020). Female Reproductive System. [Data Collection]. Thingiverse. https://www.thingiverse.com/thing:4149401
Roberts, C (2020). Microscope Smartphone Adapter (Customisable). [Data Collection]. Thingiverse. https://www.thingiverse.com/thing:4145621
Lawn, JE, Waiswa, P, Waiswa, JA, Kwesiga, D, Blencowe, H, Baschieri, A, Gordeev, VS and EN-INDEPTH Collaborator Group (2020). Every Newborn INDEPTH (EN-INDEPTH) Study - Additional Materials. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001556.
Brady, OJ and Bastos, L (2019). Code for simulating release of Wolbachia mosquitoes in Indonesia and assessing their cost effectiveness in different places over time. [Data Collection]. Github. https://github.com/obrady/Wolbachia_CE/
Brady, OJ and Bastos, L (2019). obrady/Wolbachia_CE. [Data Collection]. Github. https://github.com/obrady/Wolbachia_CE/
Pearson, C, Abbas, KM, Clifford, S, Flasche, S and Hladish, TJ (2019). denvax: Simple Dengue Test and Vaccinate Cost Thresholds. [Data Collection]. The Comprehensive R Archive Network. https://cran.r-project.org/web/packages/denvax/index.html
Timaeus, I (2019). convertCMC: Convert century month codes to Stata dates. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3557306
Abbott, S (2019). seabbs/SpeedyMarkov. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3556670
Funk, S (2019). sbfnk/epimixr. [Data Collection]. Github. https://github.com/sbfnk/epimixr
Gasparrini, A (2019). gasparrini/2019_armstrong_EHP_Rcodedata. [Data Collection]. Github. https://github.com/gasparrini/2019_armstrong_EHP_Rcodedata
Abbott, S (2019). seabbs/EstZoonoticTB. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3462381
Knight, G (2019). gwenknight/empiricprescribing. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3418998
Lytras, T, Gasparrini, A and Wang, S (2019). FluMoDL: Influenza-Attributable Mortality with Distributed-Lag Models. [Data Collection]. The Comprehensive R Archive Network. https://cran.r-project.org/package=FluMoDL
Kwizera, R, Cresswell, FV, Mugumya, G, Okirwoth, M, Kagimu, E, Bangdiwala, AS, Williams, DA, Rhein, J, Boulware, DR and Meya, DB (2019). CSFLAM_data set revised. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.9415853.v1
Abbott, S (2019). seabbs/ModelTBBCGEngland. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3360668
Stockwin, J, Thompson, R, Cori, A, Jombart, T, Kamvar, ZN and FitzJohn, R (2019). jstockwin/EpiEstimApp: v1.0.0. [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.3275999
Cori, A, Kamvar, ZN, Stockwin, J, Jombart, T, Thompson, R and Dahlqwist, E (2019). mrc-ide/EpiEstim: 2.2-3. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3333653
Thompson, J (2019). SWPERMUTE: Stata module to compute Permutation tests for Stepped-Wedge Cluster-Randomised Trials. [Data Collection]. Statistical Software Components S458426, Boston College Department of Economics. https://ideas.repec.org/c/boc/bocode/s458426.html
Roberts, C and LSHTM Global Health Analytics Group (2019). LSHTM-ORK/OBD. [Data Collection]. Github. https://github.com/LSHTM-ORK/OBD
Masselot, P (2019). PierreMasselot/Paper--2019--Air-pollution-warning-system. [Data Collection]. Github. https://github.com/PierreMasselot/Paper--2019--Air-pollution-warning-system
Cerna-turoff, I, Fischer, H, Mayhew, S and Devries, K (2019). Violence against children and natural disasters: A systematic review and meta-analysis of quantitative evidence. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0217719
Leurent, B, Gomes, M, Cro, S, Wiles, N and Carpenter, JR (2019). CEmimix Stata do-file - First version. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.8168021.v1
Smith, R (2019). An experimental investigation of social preferences, their determinants and their role in the labour supply function. [Data Collection]. UK Data Service, Essex, United Kingdom. https://doi.org/10.5255/UKDA-SN-850566
Sabherwal, S (2019). extended data for protocol. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.7503887.v4
Fernandez, MAL and Redondo, D (2019). migariane/HETMOR-Causal-Inference: Effect Modification and Collapsibility in Evaluations of Public Health Interventions. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.2560819
Fernandez, MAL (2019). migariane/cvAUROC: Cross-validated AUC for Stata users. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.2560816
Chatzilena, A and Van Leeuwen, E (2019). anastasiachtz/COMMAND_stan/. [Data Collection]. Github. https://github.com/anastasiachtz/COMMAND_stan/
Sear, R, Sheppard, P and Coall, DA (2019). Supplementary Table 1 from Cross-cultural evidence does not support universal acceleration of puberty in father-absent households. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.7756952.v1
Fernandez, MAL, Thomas, A, Gelaye, B, Racape, J, Sanchez-Perez, MJ and Williams, MA (2019). migariane/Stillbirth: Analysis Stillbirth risk by SES in Spain. [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.2562363
Fernandez, MAL, Schomaker, M, Redondo-Sanchez, D, Perez, MJS, Vaidya, A and Schnitzer, ME (2019). migariane/ColliderApp: ColliderAppLuque. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.2560807
Fernandez, MAL (2019). migariane/EASP_NET_SURV: Tutorial Net Survival. [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.2560811
Mistry, MN (2019). A High-Resolution (0.25 degree) Historical Global Gridded Dataset of Climate Extreme Indices (1970-2016) using GLDAS data. [Data Collection]. PANGAEA. https://doi.org/10.1594/PANGAEA.898014
Masselot, P (2019). PierreMasselot/hhws. [Data Collection]. Github. https://github.com/PierreMasselot/hhws
Xiang, F and Frost, S (2019). xiangfstats/GenieR: A final release. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.5281/zenodo.2532305
Kafetzopoulou, LE, Pullan, ST, Lemey, P, Suchard, MA, Ehichioya, DU, Pahlmann, M, Thielebein, A, Hinzmann, J, Oestereich, L, Wozniak, DM, Efthymiadis, K, Schachten, D, Koenig, F, Matjeschk, J, Lorenzen, S, Lumley, S, Ighodalo, Y, Adomeh, DI, Olokor, T, Omomoh, E, Omiunu, R, Agbukor, J, Ebo, B, Aiyepada, J, Ebhodaghe, P, Osiemi, B, Ehikhametalor, S, Akhilomen, P, Airende, M, Esumeh, R, Muoebonam, E, Giwa, R, Ekanem, A, Igenegbale, G, Odigie, G, Okonofua, G, Enigbe, R, Oyakhilome, J, Yerumoh, EO, Odia, I, Aire, C, Okonofua, M, Atafo, R, Tobin, E, Asogun, D, Akpede, N, Okokhere, PO, Rafiu, MO, Iraoyah, KO, Iruolagbe, CO, Akhideno, P, Erameh, C, Akpede, G, Isibor, E, Naidoo, D, Hewson, R, Hiscox, JA, Vipond, R, Carroll, MW, Ihekweazu, C, Formenty, P, Okogbenin, S, Ogbaini-Emovon, E, Günther, S and Duraffour, S (2019). Metagenomic sequencing at the epicenter of the Nigeria 2018 Lassa fever outbreak. [Data Collection]. SCIENCE. https://doi.org/10.1126/science.aau9343
Dyble, M, Thorley, J, Page, AE, Smith, D and Migliano, AB (2019). Engagement in agricultural work is associated with reduced leisure time among Agta hunter-gatherers. [Data Collection]. Nature Human Behaviour. https://doi.org/10.1038/s41562-019-0614-6
Dianati, K, Zimmermann, N, Milner, J, Muindi, K, Ezeh, A, Chege, M, Mberu, B, Kyobutungi, C, Fletcher, H, Wilkinson, P and Davies, M (2019). Household air pollution in Nairobi's slums: A long-term policy evaluation using participatory system dynamics. [Data Collection]. BMC Medicine. https://doi.org/10.1186/s12916-019-1260-6
Yip, JLY, Bright, T, Ford, S, Mathenge, W and Faal, H (2018). Data from: Process evaluation of a national primary eye care programme in Rwanda. [Data Collection]. Dryad Digital Repository. https://doi.org/10.5061/dryad.2pb2f1k
Chandna, A, White, L, Pongvongsa, T, Mayxay, M, Newton, P, Day, N and Lubell, Y (2018). YLubell/SEA-CTN: surveillance-poct. [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.2206940
Jombart, T, Campbell, F and Fitzjohn, R (2018). outbreaker2: Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data. [Data Collection]. The Comprehensive R Archive Network. https://CRAN.R-project.org/package=outbreaker2
Day, LT, Ruysen, H, Gordeev, VS, Gore-langton, GR, Boggs, D, Cousens, S, Moxon, SG, Blencowe, H, Baschieri, A, Rahman, AE, Tahsina, T, Zaman, SB, Hossain, T, Rahman, QS, Ameen, S, Arifeen, SE, KC, A, Shrestha, SK, KC, NP, Singh, D, Jha, AK, Jha, B, Rana, N, Basnet, O, Joshi, E, Paudel, A, Shrestha, PR, Jha, D, Bastola, RC, Ghimire, JJ, Paudel, R, Salim, N, Shamba, D, Manji, K, Shabani, J, Shirima, K, Mkopi, N, Mrisho, M, Manzi, F, Jaribu, J, Kija, E, Assenga, E, Kisenge, R, Pembe, A, Hanson, C, Mbaruku, G, Masanja, H and Lawn, JE (2018). EN-BIRTH Data Collection Tools. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000951.
Day, LT, Ruysen, H, Gordeev, VS, Gore-langton, GR, Boggs, D, Cousens, S, Moxon, SG, Blencowe, H, Baschieri, A, Rahman, AE, Tahsina, T, Zaman, SB, Hossain, T, Rahman, QS, Ameen, S, Arifeen, SE, KC, A, Shrestha, SK, KC, NP, Singh, D, Jha, AK, Jha, B, Rana, N, Basnet, O, Joshi, E, Paudel, A, Shrestha, PR, Jha, D, Bastola, RC, Ghimire, JJ, Paudel, R, Salim, N, Shamba, D, Manji, K, Shabani, J, Shirima, K, Mkopi, N, Mrisho, M, Manzi, F, Jaribu, J, Kija, E, Assenga, E, Kisenge, R, Pembe, A, Hanson, C, Mbaruku, G, Masanja, H and Lawn, JE (2018). EN-BIRTH Data Collector Training - Handbook and Manual. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000952.
Day, LT, Ruysen, H, Gordeev, VS, Gore-langton, GR, Boggs, D, Cousens, S, Moxon, S, Blencowe, H, Baschieri, A, Rahman, AE, Tahsina, T, Zaman, SB, Hossain, T, Rahman, QS, Ameen, S, Arifeen, SE, KC, A, Shrestha, SK, KC, NP, Singh, D, Jha, AK, Jha, B, Rana, N, Basnet, O, Joshi, E, Paudel, A, Shrestha, PR, Jha, D, Bastola, RC, Ghimire, JJ, Paudel, R, Salim, N, Shamba, D, Manji, K, Shabani, J, Shirima, K, Mkopi, N, Mrisho, M, Manzi, F, Jaribu, J, Kija, E, Assenga, E, Kisenge, R, Pembe, A, Hanson, C, Mbaruku, G, Masanja, H and Lawn, JE (2018). EN-BIRTH Data Collector Training - Supporting Annexes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000953.
Day, LT, Ruysen, H, Gordeev, VS, Gore-langton, GR, Boggs, D, Cousens, S, Moxon, SG, Blencowe, H, Baschieri, A, Rahman, AE, Tahsina, T, Zaman, SB, Hossain, T, Rahman, QS, Ameen, S, Arifeen, SE, KC, A, Shrestha, SK, KC, NP, Singh, D, Jha, AK, Jha, B, Rana, N, Basnet, O, Joshi, E, Paudel, A, Shrestha, PR, Jha, D, Bastola, RC, Ghimire, JJ, Paudel, R, Salim, N, Shamba, D, Manji, K, Shabani, J, Shirima, K, Mkopi, N, Mrisho, M, Manzi, F, Jaribu, J, Kija, E, Assenga, E, Kisenge, R, Pembe, A, Hanson, C, Mbaruku, G, Masanja, H and Lawn, JE (2018). EN-BIRTH Data Collector Training – Training Module material. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000954.
Kucharski, A (2018). scrapR. [Data Collection]. Github. https://github.com/adamkucharski/scrapR/
Brady, OJ (2018). obrady/Brazil_microcepahly_analysis_public. [Data Collection]. Github. https://github.com/obrady/Brazil_microcepahly_analysis_public
Masselot, P (2018). PierreMasselot/Paper--2018--Aggregated_response_in_regression. [Data Collection]. Github. https://github.com/PierreMasselot/Paper--2018--Aggregated_response_in_regression
Herbst, K, Pillay, D, Baisley, K, Barnighausen, T and Koole, O (2018). DREAMS baseline study in young men aged 20-29 years in rural KwaZulu Natal, South Africa, 2006-2015. [Data Collection]. INDEPTH Network. https://doi.org/10.7796/AHRI.DREAMS.DREAMS.Male.Baseline.2018.v1
MacPherson, P, Khundi, M, Nliwasa, M, Choko, AT, Phiri, VK, Webb, EL, Dodd, PJ, Cohen, T, Harris, R and Corbett, EL (2018). BlantyreTBEpi. [Data Collection]. Github. https://github.com/petermacp/BlantyreTBEpi
Keogh, R (2018). ruthkeogh/landmark_CF. [Data Collection]. Github. https://github.com/ruthkeogh/landmark_CF
Sabot, K (2018). IDEAS project - Professional advice network study in Ethiopia. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000821.
Walker, T (2018). Novel Wolbachia strains in Anopheles malaria vectors from Sub-Saharan Africa. [Data Collection]. Open Science Framework. https://doi.org/10.17605/OSF.IO/MW6XZ
Leurent, B, Gomes, M, Faria, R, Morris, S, Grieve, R and Carpenter, JR (2018). Sensitivity analysis for missing data in cost-effectiveness analysis: Stata code. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.6714206.v1
Keogh, R (2018). MI-CC. [Data Collection]. Github. https://github.com/ruthkeogh/MI-CC
Jasseh, M, D'Alessandro, U and Dondeh, BL (2018). Farafenni INDEPTH Core Dataset 1982-2015 (Release 2018). [Data Collection]. INDEPTH Network. http://doi.org/10.7796/INDEPTH.GM011.CMD2015.v2
Jombart, T, Kendall, M, Almagro-Garcia, J and Colijn, C (2018). treespace: exploration of landscapes of phylogenetic trees. [Data Collection]. Github. https://thibautjombart.github.io/treespace/
Roberts, C (2018). ELISA Plate Washer. [Data Collection]. Thingiverse. https://www.thingiverse.com/thing:2856117
Knight, G (2018). Code for "The relative fitness of drug resistant Mycobacterium tuberculosis: a modelling study of household transmission in Lima, Peru". [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.1205418
Trias-Llimós, S, Martikainen, P, Mäkelä, P and Janssen, F (2018). Comparison of different approaches for estimating age-specific alcohol-attributable mortality: The cases of France and Finland. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0194478.s005
Wilkinson, S, Douglas, IJ, Stirnadel-Farrant, H, Smeeth, L and Tomlinson, LA (2018). Type 2 Diabetes drug codelist. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.281.
LSHTM Library & Archives service (2018). LSHTM Research Data Management Policy. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/PUBS.00612422
Funk, S (2018). Socialmixr: Social Mixing Matrices for Infectious Disease Modelling. [Data Collection]. The Comprehensive R Archive Network. https://CRAN.R-project.org/package=socialmixr https://github.com/sbfnk/socialmixr
LSHTM Library & Archives Service (2018). LSHTM Data Management Plan for Research Students. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/PUBS.03750331
LSHTM Library & Archives Service (2018). LSHTM Data Management Plan for research projects. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/PUBS.03716765
Fung Lee, S, Ng, TY, Wong, FCS and Fernandez, MAL (2018). migariane/CER_SEER_FL_RTvsCH: Cancer Survival Outcome among Stage I follicular Lymphoma Cancer Patients Treated with Monotherapy: Radiotherapy versus Systemic Treatment. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.2560764
Gasparrini, A, Armstrong, B and Kenward, MG (2017). R code and data for: "Multivariate meta-analysis for non-linear and other multi-parameter associations". [Data Collection]. Github. https://github.com/gasparrini/2012_gasparrini_StatMed_Rcodedata
Gasparrini, A and Armstrong, B (2017). R code and data for: "Reducing and meta-analysing estimates from distributed lag non-linear models". [Data Collection]. Github. https://github.com/gasparrini/2013_gasparrini_BMCmrm_Rcodedata
Gasparrini, A, Guo, Y, Hashizume, M, Kinney, PL, Petkova, EP, Lavigne, E, Zanobetti, A, Schwartz, JD, Tobias, A, Leone, M, Tong, S, Honda, Y, Kim, H and Armstrong, BG (2017). R code and data for: "Temporal Variation in Heat–Mortality Associations: A Multicountry Study". [Data Collection]. Github. https://github.com/gasparrini/2015_gasparrini_EHP_Rcodedata
Mccreesh, N (2017). Model code for "An explanation for the low proportion of tuberculosis that results from transmission between household and known social contacts". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.283.
Fernandez, MAL (2017). CMATCH: Stata module to tabulate matched pairs in 1:1 case control study by exposure status. [Data Collection]. EconPapers. https://econpapers.repec.org/RePEc:boc:bocode:s458408
Roberts, C (2017). FPC Grader. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.1116798
Roberts, C (2017). Open Data Kit PDF Report Creator. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://github.com/chrissyhroberts/ODK_PDF_Reports
Kabudula, C and Rentsch, C (2017). Point-of-contact Interactive Record Linkage (PIRL). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.998867
Bartlett, J and Keogh, R (2017). smcfcs: Multiple Imputation of Covariates by Substantive Model Compatible Fully Conditional Specification. [Data Collection]. The Comprehensive R Archive Network. https://cran.r-project.org/package=smcfcs
Luque, MA, Maringe, C and Nelson, P (2017). CVAUROC: Stata module to compute Cross-validated Area Under the Curve for ROC Analysis after Predictive Modelling for Binary Outcomes. [Data Collection]. EconPapers. http://econpapers.repec.org/RePEc:boc:bocode:s458324
Judah, G, de Witt Huberts, J, Drassal, A and Aunger, R (2017). The development and validation of a Real Time Location System to reliably monitor everyday activities in natural contexts. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0171610
Jacob, PE, Lee, A, Murray, L and Funk, S (2017). rbi: R Interface to LibBi. [Data Collection]. The Comprehensive R Archive Network. https://cran.r-project.org/package=rbi
Gasparrini, A and Leone, M (2017). gasparrini/2014_gasparrini_BMCmrm_Rcodedata. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://github.com/gasparrini/2014_gasparrini_BMCmrm_Rcodedata
Gasparrini, A, Armstrong, B and Scheipl, F (2017). dlnm: Distributed Lag Non-Linear Models. [Data Collection]. The Comprehensive R Archive Network. https://CRAN.R-project.org/package=dlnm
Armstrong, BG, Gasparrini, A and Tobias, A (2017). R and STATA code for: "Conditional Poisson models: a flexible alternative to conditional logistic case cross-over analysis". [Data Collection]. Github. https://github.com/gasparrini/2014_armstrong_BMCmrm_Codedata
Vicedo-cabrera, AM, Forsberg, B, Tobias, A, Zanobetti, A, Schwartz, J, Armstrong, B and Gasparrini, A (2017). R code and data for: "Associations of Inter- and Intraday Temperature Change With Mortality". [Data Collection]. Github. https://github.com/gasparrini/2016_vicedo-cabrera_AJE_Rcodedata
Gasparrini, A, Armstrong, B and Kenward, MG (2017). R code for: "Distributed lag non-linear models". [Data Collection]. Github. https://github.com/gasparrini/2010_gasparrini_StatMed_Rcode
Gasparrini, A (2017). R code for: "Modeling exposure–lag–response associations with distributed lag non-linear models". [Data Collection]. Github. https://github.com/gasparrini/2014_gasparrini_StatMed_Rcodedata
Gasparrini, A and Armstrong, B (2017). R code for: "The impact of heat waves on mortality". [Data Collection]. Github. https://github.com/gasparrini/2011_gasparrini_Epidem_Rcode
Bhaskaran, K, Gasparrini, A, Hajat, S, Smeeth, L and Armstrong, B (2017). R code, Stata code and data for: "Time series regression studies in environmental epidemiology". [Data Collection]. Github. https://github.com/gasparrini/2013_bhaskaran_IJE_Codedata
Gasparrini, A (2017). Tutorial code for "Distributed Lag Linear and Non-Linear Models in R: The Package dlnm". [Data Collection]. Github. https://github.com/gasparrini/2011_gasparrini_JSS_Rcode
Gasparrini, A, Scheipl, F, Armstrong, B and Kenward, M (2017). R code and data for: "A penalized framework for distributed lag non-linear models". [Data Collection]. Github. https://github.com/gasparrini/2017_gasparrini_Biomet_Rcodedata
Chen, F, Wang, S, Jiang, X, Ding, S, Lu, Y, Kim, J, Sahinalp, SC, Shimizu, C, Burns, JC, Wright, VJ, Png, E, Hibberd, ML, Lloyd, DD, Yang, H, Telenti, A, Bloss, CS, Fox, D, Lauter, K and Ohno-Machado, L (2016). PRINCESS: Privacy-protecting Rare disease International Network Collaboration via Encryption through Software guard extensionS. [Data Collection]. Bioinformatics. https://doi.org/10.1093/bioinformatics/btw758
Quartagno, M and Carpenter, J (2016). jomo: Multilevel Joint Modelling Multiple Imputation. [Data Collection]. The Comprehensive R Archive Network. https://cran.r-project.org/package=jomo
Reid, A (2016). MESH subjects file for Eprints. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000267.
Rathod, SD, De Silva, MJ, Ssebunnya, J, Breuer, E, Murhar, V, Luitel, NP, Medhin, G, Kigozi, F, Shidhaye, R, Fekadu, A, Jordans, M, Patel, V, Tomlinson, M and Lund, C (2016). Treatment Contact Coverage for Probable Depressive and Probable Alcohol Use Disorders in Four Low- and Middle-Income Country Districts: The PRIME Cross-Sectional Community Surveys. Stata do file for baseline analysis. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0162038.s001
Hidrobo, M, Peterman, A and Heise, L (2016). The Effect of Cash, Vouchers, and Food Transfers on Intimate Partner Violence: Evidence from a Randomized Experiment in Northern Ecuador. [Data Collection]. American Economic Association. https://doi.org/10.1257/app.20150048
Karat, AS, Omar, T, von Gottberg, A, Tlali, M, Chihota, VN, Churchyard, GJ, Fielding, KL, Johnson, S, Martinson, NA, McCarthy, K, Wolter, N, Wong, EB, Charalambous, S and Grant, AD (2016). Autopsy Prevalence of Tuberculosis and Other Potentially Treatable Infections among Adults with Advanced HIV Enrolled in Out-Patient Care in South Africa: Lesedi Kamoso study data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.122.
James, P, Sadler, K, Wondafrash, M, Argaw, A, Luo, H, Geleta, B, Kedir, K, Getnet, Y, Belachew, T and Bahwere, P (2016). Children with Moderate Acute Malnutrition with No Access to Supplementary Feeding Programmes Experience High Rates of Deterioration and No Improvement: Results from a Prospective Cohort Study in Rural Ethiopia. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0153530.s001
Chotirmall, SH, Rothnie, K, Müllerová, H, Hurst, JR, Smeeth, L, Davis, K, Thomas, SL and Quint, J (2016). Validation of the Recording of Acute Exacerbations of COPD in UK Primary Care Electronic Healthcare Records. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0151357
Limburg, H, Meester, W, Kuper, H and Polack, S (2016). RAAB - Rapid Assessment of Avoidable Blindness. [Data Collection]. Community Eye Health Journal. https://www.cehjournal.org/resources/raab/
Chapman, LAC, Dyson, L, Courtenay, O, Chowdhury, R, Bern, C, Medley, G and Hollingsworth, TD (2015). Additional file 2: of Quantification of the natural history of visceral leishmaniasis and consequences for control. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.3610364_D1.v1
Johnson, A (2015). National Survey of Sexual Attitudes and Lifestyles, 2010-2012. [Data Collection]. UK Data Service, Essex, United Kingdom. http://doi.org/10.5255/UKDA-SN-7799-2
Lawson, S and Murtagh, J (2015). LSHTM APCs 2015 (Jan-June). [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.1501032.
Davey, C, Aiken, A, Hayes, R and Hargreaves, J (2015). Replication and re-analysis of a Kenyan stepped-wedge trial – Analysis files. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.8.
Binyaruka, P, Patouillard, E, Powell-jackson, T, Greco, G, Maestad, O and Borghi, J (2015). Effect of paying for performance on utilisation, quality, and user costs of health services in Tanzania: a controlled before and after study. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.21709
Grandjean, L, Gilman, RH, Martin, L, Soto, E, Castro, B, Lopez, S, Coronel, J, Castillo, E, Alarcon, V, Lopez, V, San Miguel, A, Quispe, N, Asencios, L, Dye, C and Moore, D (2015). Data from: Transmission of multidrug-resistant and drug-susceptible tuberculosis within households: a prospective cohort study. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.br760
Jennings, S and McNicholl, R (2015). EPrints Geographic Location plugin. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.262.
Clasen, T (2015). Evaluation of WaterAid sanitation in Odisha, India (Household Baseline) (June 2015). [Data Collection]. Research Gate. https://doi.org/10.13140/RG.2.1.1043.4726
Gasparrini, A (2015). mvmeta: Multivariate and Univariate Meta-Analysis and Meta-Regression. [Data Collection]. Comprehensive R Archive Network. https://doi.org/10.17037/DATA.170.
Messenger, L, Garcia, L, Vanhove, M, Huaranca, C, Bustamante, M, Torrico, M, Torrico, F, Miles, M and Llewellyn, M (2015). Data from: Ecological host fitting of Trypanosoma cruzi TcI in Bolivia: mosaic population structure, hybridization and a role for humans in Andean parasite dispersal. [Data Collection]. Dryad Digital Repository. https://doi.org/10.5061/dryad.b8465
Benavente, E, Coll, F, Furnham, N, Mcnerney, R, Glynn, J, Campino, S, Pain, A, Mohareb, FR and Clark, T (2015). PhyloTrack. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.82.
Vehkala, M, Shubin, M, Connor, TR, Thomson, N and Corander, J (2015). Data from: Novel R pipeline for analyzing Biolog phenotypic microarray data. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.r98g7
Mobegi, V, Duffy, C, Amambua-Ngwa, A, Loua, KM, Laman, E, Nwakanma, DC, MacInnis, B, Aspeling-jones, H, Murray, L, Clark, T, Kwiatkowski, DP and Conway, D (2015). Genome-wide analysis of selection on the malaria parasite Plasmodium falciparum in West African populations of differing infection endemicity: Supplementary data. [Data Collection]. Molecular Biology and Evolution, Oxford Journals. https://doi.org/10.1093/molbev/msu106
Gautham, M, Manish, S, Sanjay, G and Spicer, N (2015). IDEAS project - Private sector health data sharing study in West Bengal. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.112.
Bhattacharyya, S (2015). IDEAS project - Qualitative data for the Data Informed Platform for Health formative study in West Bengal. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.114.
Coll, F, Mcnerney, R, Preston, MD, Guerra-assunção, JA, Warry, A, Hill-Cawthorne, G, Mallard, K, Nair, M, Miranda, A, Alves, A, Perdigão, J, Viveiros, M, Portugal, I, Hasan, Z, Hasan, R, Glynn, J, Martin, N, Pain, A and Clark, T (2015). TB Profiler. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. http://tbdr.lshtm.ac.uk/
Rehill, N, Armstrong, B and Wilkinson, P (2014). Data from: Clarifying life lost due to cold and heat: a new approach using annual time series. [Data Collection]. Dryad digital repository. https://doi.org/10.5061/dryad.02k83
Coll, F, Preston, M, Guerra-Assunção, JA, Hill-Cawthorn, G, Harris, D, Perdigão, J, Viveiros, M, Portugal, I, Drobniewski, F, Gagneux, S, Glynn, JR, Pain, A, Parkhill, J, McNerney, R, Martin, N and Clark, T (2014). PolyTB: A web-based resource designed to explore Mycobacterium tuberculosis complex (MTBC) genomic variation at a global scale. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. http://pathogenseq.lshtm.ac.uk/#tuberculosis
Cox, S, Halcox, J, Prentice, A and Kamala, BA (2014). Vascular Function Intervention Trial in sickle cell disease (V-FIT): Trial Protocol. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.
Gautham, M, Subharwal, M, Gupta, S, Spicer, N and Mishra, N (2014). IDEAS project - Private sector health data sharing study in Uttar Pradesh. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.115.
Fielding, K, Lewis, J and Jiang, S (2013). Effectiveness of electronic reminders to improve medication adherence in tuberculosis patients: a cluster-randomised trial. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.4.
UCLEB Consortium (2013). Population Genomics of Cardiometabolic Traits: Design of the UCL-LSHTM-Edinburgh-Bristol (UCLEB) Consortium. [Data Collection]. PLoS One. https://doi.org/10.1371/journal.pone.0071345
Langan, S, Smeeth, L, Margolis, DJ and Thomas, SL (2013). Herpes Zoster Vaccine Effectiveness against Incident Herpes Zoster and Post-herpetic Neuralgia in an Older US Population: A Cohort Study. [Data Collection]. PLOS Medicine. https://doi.org/10.1371/journal.pmed.1001420
Roberts, C (2012). Droplet Digital PCR (ddPCR) data analysis scripts. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.31.
Roberts, C, Mtuy, T, Derrick, T, Burton, M and Holland, M (2012). Eyescores - Electronic Data Capture and photographic evidence collection platform for biological field studies. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.32.
Coll, F, Mallard, K, Preston, M, Bentley, S, Parkhill, J, Mcnerney, R, Martin, N and Clark, T (2012). In Silico Spoligotyping. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://web.archive.org/web/20140726124623/http://pathogenseq.lshtm.ac.uk/
Preston, MD, Manske, M, Horner, N, Assefa, S, Campino, S, Auburn, S, Zongo, I, Ouedraogo, J, Nosten, F, Anderson, T and Clark, T (2012). VCF Viewer (VARB). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://web.archive.org/web/20140726124623/http://pathogenseq.lshtm.ac.uk/
Bhaskaran, K (2011). DATACHECK: Stata module to perform data checks and produce informative output. [Data Collection]. EconPapers. https://econpapers.repec.org/RePEc:boc:bocode:s457246
Grundy, E (2010). Ethnicity and Economic Activity: Longitudinal Perspectives, 1971-2006. [Data Collection]. UK Data Service, Colchester, Essex, United Kingdom. https://doi.org/10.5255/UKDA-SN-6416-1
Grundy, E (2010). Limiting Long-Term Illness: Longitudinal Perspectives, 1971-2006. [Data Collection]. UK Data Service, Colchester, Essex, UK. https://doi.org/10.5255/UKDA-SN-6418-1
Perkins, TT, Kingsley, RA, Fookes, MC, Gardner, PP, James, KD, Yu, L, Assefa, SA, He, M, Croucher, NJ, Pickard, DJ, Maskell, DJ, Parkhill, J, Choudhary, J, Thomson, NR and Dougan, G (2009). A Strand-Specific RNA–Seq Analysis of the Transcriptome of the Typhoid Bacillus Salmonella Typhi. [Data Collection]. PLOS Genetics. https://doi.org/10.1371/journal.pgen.1000569
Watkins, NA, Gusnanto, A, de Bono, B, De, S, Miranda-Saavedra, D, Hardie, DL, Angenent, WGJ, Attwood, AP, Ellis, PD, Erber, W, Foad, NS, Garner, SF, Isacke, CM, Jolley, J, Koch, K, Macaulay, IC, Morley, SL, Rendon, A, Rice, KM, Taylor, N, Thijssen-Timmer, DC, Tijssen, MR, van der Schoot, CE, Wernisch, L, Winzer, T, Dudbridge, F, Buckley, CD, Langford, CF, Teichmann, S, Göttgens, B and Ouwehand, WH (2009). A HaemAtlas: characterizing gene expression in differentiated human blood cells. [Data Collection]. Blood. https://doi.org/10.1182/blood-2008-06-162958
Carver, T, Thomson, N, Bleasby, A, Berriman, M and Parkhill, J (2009). DNAPlotter: circular and linear interactive genome visualization. [Data Collection]. Github. http://sanger-pathogens.github.io/Artemis/DNAPlotter/
Almagro-Garcia, J and Clark, T (2009). SnoopCGH. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. http://snoopcgh.sourceforge.net/
Lakhani, A, Olearnik, H and Eayres, D (2007). Clinical and Health Outcomes Knowledge Base. [Data Collection]. The Information Centre for Health and Social care / National Centre for Health Outcomes Development, London. http://digital.nhs.uk/article/1885/Compendium-of-Population-Health-Indicators
Griffin, J (2005). INTCENS: Stata module to perform interval-censored survival analysis. [Data Collection]. EconPapers. https://econpapers.repec.org/RePEc:boc:bocode:s453501