Data capture method
Number of items: 528.
Dataset
PierreMasselot/Paper--2022--Epidemiology--PM2.5_components. (2025)
Masselot, Pierre; Gasparrini, Antonio
Code for Cascades of effectiveness of next-generation insecticide-treated nets against malaria, from entomological trials to real-life conditions. (2025)
Champagne, Clara; Lemant, Jeanne; Assenga, Alphonce; Kibondo, Ummi A.; Lekundayo, Ruth G.; Mbuba, Emmanuel; Moore, Jason; Muganga, Joseph B.; Ntabaliba, Watson S.; Odufuwa, Olukayode G.; Swai, Johnson Kyeba; Alexa, Maria; Goers, Roland; Golumbeanu, Monica; Chitnis, Nakul; Ross, Amanda; N'Guessan, Raphael; Moore, Sarah; Pothin, Emilie
Code and data for "Bundling Measures for Food Systems Transformation: a global, multimodel assessment". (2025)
Sundiang, Marina; Diniz Oliveira, Thais; Mason-D'Croz, Daniel; Gibson, Matthew; Beier, Felicitas Dorothea; Benavidez, Lauren; Bodirsky, Benjamin Leon; Bos, Astrid; Chepeliev, Maksym; Chen, David Meng-Chuen; de Lange, Thijs; Doelman, Jonathan; Dunston, Shahnila; Frank, Stefan; Fujimori, Shinichiro; Hasegawa, Tomoko; Havlik, Petr; Hristov, Jordan; Jägermeyr, Jonas; Kozicka, Marta; Kuiper, Marijke; Kyle, Page; Lotze-Campen, Hermann; Luchtenbelt, Hermen; Mishra, Abhijeet; Müller, Christoph; Nelson, Gerald; Palazzo, Amanda; Perez Dominguez, Ignacio; Popp, Alexander; Sands, Ronald; Springmann, Marco; Stehfest, Elke; Sulser, Timothy; Takahashi, Kiyoshi; Tassinari, Gianmaria; Thom, Ferike; Thornton, Philip; Tsuchiya, Kazuaki; van Zeist, Willem-Jan; van Meijl, Hans; van der Mensbrugghe, Dominique; van Vuuren, Detlef; van Zanten, Hannah; Weindl, Isabelle; Wiebe, Keith; Zhao, Xin; Herrero, Mario
hubverse-org/hubEnsemblesManuscript. (2025)
Shandross, Li; Howerton, Emily; Krystalli, Anna; Reich, Nicholas G.; Contamin, Lucie; Ray, Evan; Gruson, Hugo; Funk, Sebastian; Hochheiser, Harry; Kamvar, Zhian N.
cmmid/reconnect_uk_social_contact_survey. (2025)
Goodfellow, Lucy; Quilty, Billy J.; Van Zandvoort, Kevin; Edmunds, W. John
Quantitative bias analysis for mismeasured variables in health research: a review of software tools. (2025)
Gerlach-Wood, Codie J. C.; Tilling, Kate; Bartlett, Jonathan W.; Hughes, Rachael A.
gasparrini/UKB-confounding. (2025)
Gasparrini, Antonio; Vanoli, Jacopo
typhoidgenomics/TyphoidGenomicsConsortiumMykrobe. (2025)
Ingle, Danielle J.; Holt, Kathryn E.; Dyson, Zoe Anne
Data Management for MSc Summer Projects. (2025)
Knight, Gareth; LSHTM Library, Archive & Open Research Services
picture_as_pdf
epinowcast/baselinenowcast-paper. (2025)
Johnson, Kaitlyn E.; Abbott, Sam; Bracher, Johannes
Baselines_Application_Data. (2025)
Stapper, Manuel
hstrongman/OSA-narc_CPRD_validation. (2025)
Strongman, Helen
jodyphelan/pathogen-profiler. (2025)
Phelan, Jody; van Heusden, Peter; Meuli, Michael; Cuddihy, Thom
superspreading: Understand Individual-Level Variation in Infectious Disease Transmission. (2025)
Lambert, Joshua W.; Kucharski, Adam J.; Adam, Dillon C.; Funk, Sebastian; Gupte, Pratik; Gruson, Hugo; Azam, James M.; Hartgerink, Chris
Eyedeet/measles_vaccination_scenarios. (2025)
Suffel, Anne Marie
Contagent. (2025)
Greener, Robert Alexander
jodyphelan/NTM-Profiler. (2025)
Phelan, Jody
migariane/eltmle. (2025)
Luque-Fernandez, Miguel Angel; Maringe, Camille; Smith, Matthew J.
klebgenomics/KlebNNSsero. (2025)
Holt, Kathryn E.; Keegan, Shaun
Data and R code to accompany 'Compound and cascading effects of climatic extremes on dengue outbreak risk in the Caribbean: an impact-based modelling framework with long-lag and short-lag interactions'. (2025)
Fletcher, Chloe; Moirano, Giovenale; Alcayna, Tilly; Rollock, Leslie; Van Meerbeeck, Cédric J; Mahon, Roche; Trotman, Adrian; Boodram, Laura-Lee; Browne, Tia; Best, Sabu; Lührsen, Daniela; Díaz, Avriel R; Dunbar, Willy; Lippi, Catherine A; Ryan, Sadie J; Colón-González, Felipe J; Stewart-Ibarra, Anna M; Lowe, Rachel
NikkiR08/AMR-UCR. (2025)
Naylor, Nichola R.
NikkiR08/VAF_AMR_EconBurden. (2025)
Naylor, Nichola R.
R Scripts for Analysis of food-group level household and individual dietary data. (2025)
Sandalinas, Fanny; Osman, Mohammed; Goto, Rie; Joy, Edward
francescochecchi/sdn_mortality_2024. (2025)
Checchi, Francesco
kingaa/pomp. (2025)
King, Aaron A; O'Dea, Eamon; Asfaw, Kidus; Wheeler, Jesse; Breto, Carles; Ionides, Edward; Akinshin, Andrey; Voipio, Timo; Funk, Sebastian
esnightingale/vl-spatial-diagnosis-delay. (2025)
Nightingale, Emily
klebgenomics/Kaptive. (2025)
Wick, Ryan R.; Stanton, Thomas; Wyres, Kelly L; Holt, Kathryn E.
Data Analysis Plan for Event (Heatwave and High Air Pollution) and Non-Event (Average Temperature and Moderate/Good Air Quality) Survey. (2025)
Bwire, Constance; Hughes, Robert; Milner, James; Yeung, Shunmay; Bonell, Ana; Bonnet, Gabrielle
description
lshtm-tbmg/tbmod-pub-funding-impacts. (2025)
Clark, Rebecca
Data and R-code to accompany 'Modelling the impact of climate and the environment on the spatiotemporal dynamics of Lyme borreliosis in Germany'. (2025)
Lotto Batista, Martín; Carvalho, Bruno; Gibb, Rory; Solaraju-Murali, Balakrishnan; Flasche, Stefan; Castell, Stefanie; Ghozzi, Stéphane; Lowe, Rachel
Data and code from "The overlapping global distribution of dengue, chikungunya, Zika and yellow fever". (2025)
Lim, Ahyoung; Brady, Oliver J.
thegargiulian/GRDM. (2025)
Gargiulo, Maria
toshiakiasakura/polio_environmental_surveillance. (2025)
Asakura, Toshiaki R.
A protocol for emulating four published randomised controlled trials using registry data: effects of antibiotics in cystic fibrosis. (2025)
Granger, Emily; Allen, Lorna; Charman, Susan; Clarke, Sarah; Davies, Gwyneth; Frost, Freddy; Plowman, Hannah; Tomlinson, Laurie A.; Keogh, Ruth
description
tomsumner/Timing_of_vaccination. (2025)
Sumner, Tom
Prediction models for Mtb infection among adolescent and adult household contacts in high tuberculosis incidence settings. (2025)
Marambire, Edson Tawanda; Calderwood, Claire J.; Larsson, Leyla; Held, Kathrin; Khan, Palwasha Y.; Banze, Denise; Nhamuave, Celina; Minja, Lillian T.; Mfinanga, Alfred; Gupta, Rishi K.; Khosa, Celso; Mutsvangwa, Junior; Heinrich, Norbert; Kranzer, Katharina
AndriaMousa/SP-resistance-protective-efficacy-code: v1.1. (2025)
Mousa, Andria
ShayAdams/randomisation_code_rcts. (2025)
Soremekun, Seyi
ShayAdams/student_metrics_moodlelshtm. (2025)
Soremekun, Seyi
cmmid/comix_mobility. (2025)
Prestige, Em
simulist: Simulate Disease Outbreak Line List and Contacts Data. (2025)
Lambert, Joshua W.; Tamayo, Carmen; Gruson, Hugo; Gupte, Pratik R.; Kucharski, Adam J.; Hartgerink, Chris; Funk, Sebastian
MGDb 01. Scope and General Concepts. (2025)
Modell, Bernadette; Malherbe, Helen; Blencowe, Hannah; Mooorthie, Sowmiya; Petrou, Mary; Darlinson, Matthew; Lawn, Joy
description
seroanalytics/serojump. (2025)
Hodgson, David
ahyoung-lim/Arbo_riskmaps_public. (2025)
Lim, Ahyoung
epiverse-trace/tutorials-late. (2025)
Campos, Andree Valle; Minter, Amanda; Gruson, Hugo; Degoot, Abdoelnaser M.; Gupte, Pratik; Hartgerink, Chris; Azam, James M.
Appendix files for "Randomised controlled trial of topical combination therapy chlorhexidine 0.2% and natamycin 5% versus topical natamycin 5% alone for fungal keratitis in East Africa". (2025)
Hoffman, Jeremy
picture_as_pdf
ciarajudge/EpiFusionUtilities. (2025)
Judge, Ciara
ciarajudge/EpiFusion_Vignettes: F1000 Article Release. (2025)
Judge, Ciara
Code for "Mapping the evidence of novel plant-based foods: A systematic review of nutritional, health, and environmental impacts in high-income countries". (2025)
Jelmar Sietsma, Anne; Nájera Espinosa, Sarah
epiforecasts/eval-by-method. (2025)
Sherratt, Katharine; Funk, Sebastian
ecthomson/Contamination-Filter. (2025)
Thomson, Emma C.
ecthomson/Contamination-Phylogeny. (2025)
Thomson, Emma C.
epinowcast/epidist. (2025)
Abbott, Sam; Howes, Adam; Park, Sang Woo; Funk, Sebastian; Bayer, Damon; DeWitt, Michael
LuciaSegovia/geospatial_analysis. (2025)
Segovia De La Revilla, Lucia
2025 The Gambia FABLE calculator UP30 v1. (2025)
Carr, Tony; Addo, Felicity; Palazzo, Amanda
gigs: Assess Fetal, Newborn, and Child Growth with International Standards. (2025)
Parker, Simon R; Ohuma, Eric O.; Vesel, Linda
STROBE and SRQR checklist for the study titled "Management of microbial keratitis by private pharmacies in Uganda: a study of knowledge, attitude, and practice". (2025)
Arunga, Simon; Ebong, Abel
description
ciarajudge/EpiFusion: EpiFusionv1.0. (2025)
Judge, Ciara
opensafely/post-covid-kidney-outcomes. (2025)
Mahalingasivam, Viyaasan; Zheng, Bang; lshbz1; Dillingham, Iain
AmpliconTyper. (2025)
Spadar, Anton; Mahindroo, Jaspreet; Troman, Catherine; Owusu, Michael; Adu-Sarkodie, Yaw; Abraham, Dilip; Blossom Benny; Govindan, Karthikeyan; Mohan, Venkata Raghava; Dyson, Zoe Anne; Grassly, Nicholas; Holt, Kathryn E.
Robinah23/Community-Vaccine-Impact-Vulnerability-Index-. (2025)
Nalwanga, Robinah
ecthomson/AFI. (2024)
Thomson, Emma C.
enilles1/DR-Leptospirosis. (2024)
Nilles, Eric J.; Rees, Eleanor
joshwlambert/DAISIEprepExtra. (2024)
Lambert, Joshua W.
wastewater-informed-covid-forecasting. (2024)
Johnson, Kaitlyn E.
nicolacfoster/dcea.ana: ASCENT DCEA. (2024)
Foster, Nicola
LuciaSegovia/FAO-fisheries. (2024)
Segovia De La Revilla, Lucia; dzvoti; Codd, Tom
supingling/spc. (2024)
Ling, Suping
epiparameterDB: Database of Epidemiological Parameters. (2024)
Lambert, Joshua W.; Kucharski, Adam J.; Tamayo, Carmen
Rapid Assessment of Avoidable Blindness Report: Malaysia, Eastern Zone (2023). (2024)
International Centre for Eye Health
lshtm-tbmg/tbmod-pub-undernutrition. (2024)
Clark, Rebecca
Food Environment Evidence Directory (FEED) Map. (2024)
Juel, Rachel; Dasaraju, Aparna; Newbould, Rebecca
html
PierreMasselot/RiskExtrapolation. (2024)
Masselot, Pierre; Gasparrini, Antonio
rachaelpung/temporal_networks. (2024)
Pung, Rachael; Kucharski, Adam J.; Firth, Josh; Russell, Timothy W.; Rogers, Tim; Lee, Vernon
Model for "Estimating the health and macroeconomic burdens of tuberculosis in India, 2021-2040". (2024)
Jensen, Henning Tarp
folder_zip
LSHTMPathogenSeqLab/malaria-hub. (2024)
juuzia; Ngwana-Joseph, Gabrielle
Synthetic datasets for: "Long-term exposure to PM2.5 and mortality: an analysis of the UK Biobank". (2024)
Gasparrini, Antonio; Vanoli, Jacopo
nextstrain/nextclade. (2024)
Aksamentov, Ivan; Neher, Richard; Roemer, Cornelius; mt-gitlocalize; Parker, Anna Anya; Lin, Victor; Sibley, Thomas; Negrón, Daniel Antonio; Nextstrain bot; Anderson, John SJ; Snyk bot; Hodcroft, Emma; Actat; Rubinsteyn, Alex; Grüning, Björn; Tegomoh, Bryan; Chen, Chaoran; Bottoms, Christopher; Maguire, Finlay; Huddleston, John; Lee, Jover; Sanderson, Theo; Harkins, Elias
epichains: Simulating and Analysing Transmission Chain Statistics Using Branching Process Models. (2024)
Azam, James M.; Funk, Sebastian; Finger, Flavio; Kamvar, Zhian N.; Gruson, Hugo; Mané, Karim; Gupte, Pratik; Lambert, Joshua W.
esnightingale/vl-disaggregation. (2024)
Nightingale, Emily
theosanderson/taxonium. (2024)
Sanderson, Theo; Kramer, Alex; Goater, Richard; Hinrichs, Angie; L'YI, Sehi; Roemer, Cornelius; Kwon, Sung; Vargha, Koorous
typhoidgenomics/genotyphi. (2024)
Holt, Kathryn E.; Dyson, Zoe Anne; Hawkey, Jane; flashton2003
julianmatthewman/Eczema_outcomes_public. (2024)
Matthewman, Julian
EpiNow2: Estimate Real-Time Case Counts and Time-Varying Epidemiological Parameters. (2024)
Abbott, Sam; Hellewell, Joel; Sherratt, Katharine; Gostic, Katelyn; Hickson, Joe; Badr, Hamada S.; DeWitt, Michael; Azam, James M.; EpiForecasts; Funk, Sebastian
emilycfivian/Intersectionality-in-NSA-interventions-Analytical-code. (2024)
Fivian, Emily
klebgenomics/Kleborate: v3.0.0. (2024)
Ryan Wick; Holt, Kathryn E.; marlam89; kelwyres; Maranga, Mary; Petit III, Robert A.; da Silva, Anders Goncalves; Deveaud, Eric; Lampa, Samuel; Stanton, Tom
SLGiHub/FIEBRE_Adult_severity_scores: FIEBRE Adult Severity Scores. (2024)
SLGiHub
Rapid Assessment of Avoidable Blindness Report: Tanzania, Kilimanjaro (2022). (2024)
International Centre for Eye Health
Additional file 2 of Unsupervised title and abstract screening for systematic review: a retrospective case-study using topic modelling methodology. (2024)
Natukunda, Agnes; Muchene, Leacky K.
A comparison of covariate adjustment approaches under model misspecification in individually randomized trials. (2024)
Tackney, Mia S.; Morris, Tim; White, Ian; Leyrat, Clemence; Diaz-Ordaz, Karla; Williamson, Elizabeth
R markdown for: "Estimating Food Consumption, Micronutrient Intake, and the Contribution of Large-Scale Food Fortification to Micronutrient Adequacy in Tanzania". (2024)
Goto, Rie
folder_zip
sophiemoss/anopheles_popgen. (2024)
Moss, Sophie
fkrauer/RSV-VACC-DE. (2024)
Krauer, Fabienne
bokern/ics_covid. (2024)
Bokern, Marleen
ghr/wnv_casecrossover. (2024)
Moirano, Giovenale; Fletcher, Chloe; Semenza, Jan C.; Lowe, Rachel
ParisBap/TTE_ONTARGET. (2024)
Baptiste, Paris J.
gasparrini/UK-HWfcast. (2024)
Mistry, Malcolm; Gasparrini, Antonio
thimotei/legacy_nAb_kinetics. (2024)
Russell, Timothy W.; Kucharski, Adam J.
DAISIEmainland. (2024)
Lambert, Joshua W.; Bilderbeek, Richèl; Santos Neves, Pedro
WCSCourses/Polygenic_Risk_Scores: 2024 Africa Iteration. (2024)
j-darocha
interpretAMR/AMRrules. (2024)
Holt, Kathryn E.; Hawkey, Jane
supingling/colorectal_cancer. (2024)
Ling, Suping
alxsrobert/measles_england_sir. (2024)
Robert, Alexis; Suffel, Anne Marie
theosanderson/hospitalmedicines. (2024)
Sanderson, Theodore
ciarajudge/EpiFusion. (2024)
Judge, Ciara
ciarajudge/EpiFusion_PublicationRepo. (2024)
Judge, Ciara
APHRC-DSE/INSPIRE-Mental-Health-Project_Landscape_Analysis: R Source code. (2024)
Momanyi, Reinpeter Ondeyo; Mugotitsa, Bylhah
ryotanakamura1/smoking. (2024)
Nakamura, Ryota
Source files for 3D printed hamster anaesthesia delivery nosecone. (2024)
Langston, Harry; Fortes Francisco, Amanda; Doidge, Ciaran; Roberts, Chrissy H.; Khan, Archie A.; Jayawardhana, Shiromani; Taylor, Martin C.; Kelly, John M.; Lewis, Michael D.
cleanepi: Clean and Standardize Epidemiological Data. (2024)
Mané, Karim; Jombart, Thibaut; Bah, Bubacarr; Ahadzie, Bankolé; Mohammed, Nuredin; Degoot, Abdoelnaser M.; Gruson, Hugo; Gupte, Pratik R.; Azam, James M.; Lambert, Joshua W.; Hartgerink, Chris
cfr: Estimate Disease Severity and Case Ascertainment. (2024)
Gupte, Pratik R.; Kucharski, Adam J.; Russell, Timothy W.; Lambert, Joshua W.; Gruson, Hugo; Taylor, Tim; Azam, James M.; Degoot, Abdoelnaser M.; Funk, Sebastian
numberize: Convert Words to Numbers in Multiple Languages. (2024)
Hartgerink, Chris; Lambert, Joshua W.; Mané, Karim; Gruson, Hugo; Ahadzie, Bankole
Data for: "Cluster-randomised trial of digital adherence technology interventions to reduce poor end-of-treatment outcomes and recurrence among adults with drug-sensitive tuberculosis in Ethiopia". (2024)
Fielding, Katherine; Tadesse, Amare W.
description
ManuelaQuaresma/CSI. (2024)
Rubio, Francisco Javier; Quaresma, Manuela; Rachet, Bernard
epiverse-trace/serofoi. (2024)
Domínguez, Nicolás Torres; Gruson, Hugo; Pavlich-Mariscal, Jaime; Gomez, Geraldine; Gámez López, Miguel Enrique; Cucunubá, Zulma M.; tracelac; Hartgerink, Chris; Azam, James; ben18785
Code for "Mapping the evidence of novel plant-based foods: A systematic review of nutritional, health, and environmental impacts in high-income countries". (2024)
Nájera Espinosa, Sarah; Jelmar Sietsma, Anne
Supplementary material for "Mapping the evidence of novel plant-based foods: A systematic review of nutritional, health, and environmental impacts in high-income countries". (2024)
Nájera Espinosa, Sarah; Hadida, Genevieve; Jelmar Sietsma, Anne; Alae-Carew, Carmelia; Turner, Grace; Green, Rosemary; Picetti, Roberto; Pastorino, Silvia; Scheelbeek, Pauline
ehm-lab/hipmapp: Health Impact Projections Shiny App and Data. (2024)
De la cruz Libardi, Arturo
NHLI-Respiratory-Epi/Alcohol_use_disorder_codelist. (2024)
Cook, Sarah
finalsize: Calculate the Final Size of an Epidemic. (2024)
Gupte, Pratik; Van Leeuwen, Edwin; Kucharski, Adam; Eggo, Rosalind M.; Gruson, Hugo; Jombart, Thibaut; Valle Campos, Andree; Lambert, Joshua W.
VAC4EU/CVM: WP4 SCCS sensitivity code for publication/Zenodo. (2024)
Messina, Davide; Paoletti, Olga; Belitser, Svetlana; Gini, Rosa M.; Limoncella, Giorgio; Schultze, Anna
epiforecasts/multi-model-information: Publication release. (2024)
Sherratt, Katharine; Funk, Sebastian
Malawi Epidemiology and Intervention Research Unit Non-Communicable Disease Survey data, 2013-2017 - author-written Stata code. (2024)
Mclean, Estelle
amrnet/amrnet. (2024)
Cerdeira, Louise; Sharma, Vandana; Maranga, Mary; Carey, Megan; Dyson, Zoe Anne; Holt, Kathryn E.
obrady/CATI_Vietnam. (2024)
Brady, Oliver J.
Strobe statement for: "Health-related quality of life of adults with cutaneous leishmaniasis at ALERT Hospital, Addis Ababa, Ethiopia". (2024)
Lambert, Saba
lshtm-vimc/prime. (2024)
Abbas, Kaja M.; Vaccine Impact; Hadley, Liza
opensafely/covid_collateral_imd. (2024)
Costello, Ruth; Henderson, Alasdair
lucy-gf/imd-covid. (2024)
Goodfellow, Lucy
ehr-lshtm/code-sharing: published_article. (2024)
Schultze, Anna; Tazare, John
gwenknight/ecdc_data_age_sex. (2024)
Waterlow, Naomi; Knight, Gwen
vaccine-impact/hpv_vaccine_equity. (2024)
Abbas, Kaja M.; Vaccine Impact
emmahodcroft/ncov_2021: Release for Geneva Manuscript. (2024)
Hodcroft, Emma; Zuber, Moira; Harkins, Elias; Neher, Richard; Wagner, Cassia; Huddleston, John; Bedford, Trevor; Moncla, Louise H; Hadfield, James; fzhang12; Sibley, Thomas; Saleh, Ahmad; falnaji; Xueying; aniafijarczyk; Nezu, Tomoyuki; Müller, Nicola Felix; Gall, Astrid; Brito, Anderson; Villabona Arenas, Ch. Julian; Bell, Sidney; Kozyreva, Varvara; Eren; Puller, Vadim; Han, Alvin X.; irak; Rimaz, Hossein; Ghafari, Mahan; Sato, Takeshi; Lee, Hanbin
johntaz/nhs-opt-outs. (2024)
Tazare, John; Henderson, Alasdair
MatthewHiggins2017/PanPlasmodiumRPALFManuscript. (2024)
Higgins, Matthew
epiverse-trace/simulist. (2024)
Lambert, Joshua; Gruson, Hugo; Kucharski, Adam J.; Tamayo Cuartero, Carmen
Data for: "Differentiated HIV care cascade for youth in Zimbabwe". (2024)
Simms, Victoria; Dziva Chikwari, Chido; Ferrand, Rashida; Bandason, Tsitsi
description
williameoswald/surveydesignr. (2024)
Oswald, William
Health facility assessment of small and sick newborn care in low- and middle-income countries: systematic tool development and operationalisation with NEST360 and UNICEF. (2024)
Penzias, Rebecca E.; Bohne, Christine; Ngwala, Samuel K.; Zimba, Evelyn; Lufesi, Norman; Rashid, Ekran; Gicheha, Edith; Odedere, Opeyemi; Dosunmu, Olabisi; Tillya, Robert; Shabani, Josephine; Cross, James H.; Liaghati-Mobarhan, Sara; Chiume, Msandeni; Banda, George; Chalira, Alfred; Wainaina, John; Gathara, David; Irimu, Grace; Adudans, Steve; James, Femi; Tongo, Olukemi; Ezeaka, Veronica Chinyere; Msemo, Georgina; Salim, Nahya; Day, Louise T.; Powell-Jackson, Timothy; Chandna, Jaya; Majamanda, Maureen; Molyneux, Elizabeth M.; Oden, Maria; Richards-Kortum, Rebecca; Ohuma, Eric O.; Paton, Chris; Hailegabriel, Tedbabe; Gupta, Gagan; Lawn, Joy E.
0xr0bert/ubereats-scraper. (2023)
Greener, Robert
Whole-Genome Sequencing of Chlamydia trachomatis Strains B/HAR36 and B/Tunis864. (2023)
London School of Hygiene & Tropical Medicine
epidemery/subclinical_transmission. (2023)
Emery, Jon C; Dodd, Peter J; Banu, Sayera; Frascella, Beatrice; Garden, Frances L; Horton, Katherine C; Hossain, Shahed; Law, Irwin; van Leth, Frank; Marks, Guy B; Nguyen, Hoa Binh; Nguyen, Hai Viet; Onozaki, Ikushi; Quelapio, Maria Imelda D; Richards, Alexandra S; Shaikh, Nabila; Tiemersma, Edine W; White, Richard G; Zaman, Khalequ; Cobelens, Frank; Houben, Rein MGJ
tjhladish/dengue-abm. (2023)
Pearson, Carl A. B.; Hladish, Thomas; Pillai, Alexander N.; Chao, Dennis
DidDrog11/data_for_gbif: Final version for Gigabyte. (2023)
Simons, David
Improving modelling for epidemic responses: reflections. (2023)
Sherratt, Katharine; Abbott, Sam; Carnegie, Anna; Liu, Yang
thimotei/legacy_ct_modelling: Final version. (2023)
Abbott, Sam; Russell, Timothy W.; Hellewell, Joel; Kucharski, Adam J.
timriffe/covid_age. (2023)
Riffe, Tim; Acosta, Enrique; Kamal, Manal; Donzowa, Jessica; mskniffka; Dudel, Christian; Cimentada, Jorge; Alburez, Diego; aishwaryamuralikrishnan; Aburto, José Manuel; Pascariu, Marius D.; Del Fava, Emanuele; Ribeiro, Filipe
epiforecasts/ringbp. (2023)
Abbott, Sam; Hellewell, Joel; Lucas, Tim; Funk, Sebastian; Gimma, Amy
epiverse-trace/vaccineff: vaccineff 0.0.1. (2023)
Quevedo, David Santiago; Gupte, Pratik; Gomez, Geraldine; Gruson, Hugo; Hartgerink, Chris; tracelac; Cucunubá, Zulma M.
rorygibb/dengue_vietnam_ms: v1.0.0: Code base for Nature Communications MS. (2023)
Gibb, Rory
RNA Sequence data analysis using DESeq2 pipeline. (2023)
Namulondo, Joyce; Nyangiri, Oscar Asanya; Kimuda, Magambo Phillip; Nambala, Peter; Nassuuna, Jacent; Egesa, Moses; Nerima, Barbara; Biryomumaisho, Savino; Mugasa, Claire Mack; Nabukenya, Immaculate; Kato, Drago; Elliott, Alison; Noyes, Harry; Tweyongyere, Robert; Matovu, Enock; Mulindwa, Julius
grahams99/Health-seeking-behaviour. (2023)
Graham, Sophie
PANGEA-HIV/PANGEA-Sequences: v1.0.0. (2023)
PANGEA-HIV Consortium
Annexes to: A Systematic Review to Identify the Effectiveness of Greenhouse Gas Mitigation Interventions for Healthcare Systems in Low- and Middle-Income Countries. (2023)
Blom, Iris
description
SungmokJung/mpox_global: Initial release. (2023)
Jung, Sung-mok; Miura, Fuminari; Endo, Akira; Murayama, Hiroaki
rsetienne/DAISIE. (2023)
Neves, Pedro Santos; Lambert, Joshua W.; Etienne, Rampal S.; Bilderbeek, Richel; Xie, Shu; Valente, Luis; Hildenbrandt, H; Scherrer, Raphaël; Yangshen0325
DAISIE: Dynamical Assembly of Islands by Speciation, Immigration and Extinction. (2023)
Etienne, Rampal S.; Valente, Luis; Phillimore, Albert B.; Haegeman, Bart; Lambert, Joshua W.; Santos Neves, Pedro; Xie, Shu; Bilderbeek, Richèl J.C.; Hildenbrandt, Hanno; Hauffe, Torsten; Laudanno, Giovanni; Kristensen, Nadiah; Scherrer, Raphael
tjhladish/AbcSmc. (2023)
Pearson, Carl A. B.; Hladish, Thomas
VN Types Bayesian Modelling. (2023)
Bradley, Ellen
opensafely/Paxlovid-and-sotrovimab. (2023)
Zheng, Bang; lshbz1
cmmid/covidm_reports: HEA Snapshot. (2023)
Pearson, Carl A. B.; Thompson, Sam; Van Zandvoort, Kevin; Eggo, Rosalind M.; Jarvis, Christopher I.
WorldHealthOrganization/mca-pretermbirths-analysis. (2023)
Bradley, Ellen; Lopez, Gerard
epiverse-trace/epiparameter. (2023)
Lambert, Joshua; Gruson, Hugo; Kucharski, Adam J.; Gupte, Pratik; Salmon, Maëlle; Campos, Andree Valle; Monticone, Pietro
linfeng-wang/GMM4TB. (2023)
Wang, Linfeng
NaomiWaterlow/markov_model: V1.0.0. (2023)
Waterlow, Naomi
qleclerc/phage_antibiotic_dynamics. (2023)
Leclerc, Quentin J.
Free School Meals Natural Experiment. (2023)
Petersen, Jakob; Dezateux, Carol
aj-clements/Vivli-AMR-KG. (2023)
Knight, Gwenan M; Waterlow, Naomi; Wildfire, Jacob; Clements, Alastair J
Additional file 3 of Assessing the impact of the “malaria supporters project” intervention to malaria control in the Brazilian Amazon: an interrupted time-series analysis. (2023)
Garcia, Klauss Kleydmann Sabino; Soremekun, Seyi; Bottomley, Christian; Abrahão, Amanda Amaral; de Miranda, Cristiano Barreto; Drakeley, Chris; Ramalho, Walter Massa; Siqueira, André M
typhoidgenomics/TyphiNET. (2023)
Cerdeira, Louise; Dyson, Zoe Anne; Holt, Kathryn E.
Rapid Assessment of Avoidable Blindness Study Protocol Template. (2023)
International Centre for Eye Health
description
Differential effects of antiretroviral treatment on immunity and gut microbiome composition in people living with HIV in rural versus urban Zimbabwe. (2023)
Burkhart Colorado, Angela Sofia; Lazzaro, Alessandro; Preston, Charles; Nusbacher, Nichole; Boyd, Kathryn; Fiorillo, Suzanne; Martin, Casey; Siebert, Janet; Campbell, Thomas
BronnerG/Hosp_Vacc_analysis: v1. (2023)
Gonçalves, Bronner P.
drwariri/Mapping-the-timeliness-of-routine-childhood-vaccination-in-The-Gambia-a-spatial-modelling-study. (2023)
Wariri, Oghenebrume
Assessing the impact of the 2018 Changchun Changsheng vaccine incident on childhood vaccination in China. (2023)
Hou, Zhiyuan; Lai, Xiaozhen; Liu, Yang; Jit, Mark; Larson, Heidi; Hai, Fang
kieshaprem/hpv-1-dose: First release of the HPV 1-dose global repository. (2023)
Prem, Kiesha
francescochecchi/yem_diaspora_mortality. (2023)
Checchi, Francesco
grahams99/Enhanced_surveillance_questionnaire. (2023)
Graham, Sophie
Restricted Randomisation Procedure and codes–inSCALE Mozambique. (2023)
Soremekun, Seyi; Källander, Karin; Lingam, Raghu; Branco, Ana-Cristina Castel; Batura, Nehu; Strachan, Daniel Ll; Muiambo, Abel; Salomao, Nelson; Condoane, Juliao; Benhane, Fenias; Kasteng, Frida; Vassall, Anna; Hill, Zelee; ten Asbroek, Guus; Meek, Sylvia; Tibenderana, James; Kirkwood, Betty
SHINE 7-year Follow-up. (2023)
Piper, Joseph; Ntozini, Robert; Prendergast, Andrew
DidDrog11/arenavirus_hantavirus_app. (2023)
Simons, David
epiforecasts/transformation-forecast-evaluation. (2023)
Bosse, Nikos; Bracher, Johannes; Abbott, Sam; Funk, Sebastian
Microclimate dataset of the SAFE project landscape. (2023)
Jucker, Tommaso; Hardwick, Stephen R; Both, Sabine; Elias, Dafydd MO; Ewers, Robert M; Milodowski, David T; Saager, Elise; Iwamura, Takuya; Murray, Kris; Swinfield, T; Coomes, David A
lshtm-public/rds-ui. (2023)
Ekoriko, Promise
wtm-leung/Network-modelling-review: Network modelling review v1.0.0. (2023)
Leung, William T. M.
Data and R-code to accompany 'Towards an Early Warning System for Leptospirosis in North-Eastern Argentina'. (2023)
Lotto Batista, Martín; Rees, Eleanor M.; Gómez, Andrea; López, Soledad; Castell, Stefanie; Kucharski, Adam J.; Ghozzi, Stéphane; Müller, Gabriela V; Lowe, Rachel
Local and long-distance migration among young people in rural Malawi: importance of age, sex and family (author-writter code). (2023)
Mclean, Estelle
Trescovia/AHHME. (2023)
Emes, Eve Tresco; Naylor, Nichola
seabbs/badtobetter: Initial release. (2023)
Abbott, Sam
Impact of vaccinations, boosters and lockdowns on COVID-19 waves in French Polynesia. (2023)
Chapman, Lloyd A.C.; Aubry, Maite; Maset, Noemie; Russell, Timothy; Knock, Edward S; Lees, John A; Mallet, Henri-Pierre; Cao-Lormeau, Van-Mai; Kucharski, Adam J.
Shielding individuals at high risk of COVID-19: a micro-simulation study. Model and analyses. (2023)
Van Zandvoort, Kevin; Checchi, Francesco
shk313/Evaluating-sensitivity-and-specificity-from-LCM-a-simulation-study. (2023)
Keddie, Suzanne H
SADD synthetic cost-effectiveness dataset. (2023)
Leurent, Baptiste
gasparrini/MCC-SO2. (2023)
Gasparrini, Antonio
google-research/proteinfer. (2023)
Sanderson, Theo; Bileschi, Maxwell; Belanger, David
Eyedeet/vaccine_methods_ehr_public/. (2023)
Suffel, Anne Marie
GaryNapier/spolpred. (2023)
Napier, Gary
fionagi/GASImpactModel. (2023)
Giannini, Fiona; Abbas, Kaja
Supplementary material from "A biphasic model of lifespan in nematode Caenorhabditis elegans worm". (2023)
Mulla, Suhayl; Ludlam, Adele R.; Elragig, Aiman; Slack, Cathy; Balklava, Zita; Stich, Michael; Cheong, Alex
Effectiveness of BNT162b2 and ChAdOx1 against SARS-CoV-2 household transmission. (2023)
Clifford, Samuel; Hackman, Jada
yangclaraliu/covid_vac_africa: BMCMed_R3. (2023)
Liu, Yang; Procter, Simon R; Pearson, Carl A. B.; Madriz Montero, Andres; Torres-Rueda, Sergio; Asfaw, Elias; Uzochukwu, Benjamin; Drake, Tom; Bergren, Eleanor; Eggo, Rosalind M.; Ruiz, Francis; Ndembi, Nicaise; Nonvignon, Justice; Jit, Mark; Vassall, Anna
tjhladish/covid-abm: Active Vaccination Experiment 2023-02-02. (2023)
Pillai, Alexander N.; Hladish, Thomas; Pearson, Carl A. B.; Toh, Ben; Noah4944; Stoltzfus, Arlin
deusthindwa/ optimal.age.targeting.pneumo.vaccines: OptionaAgeTargetingPneumococcalVaccines. (2023)
Thindwa, Deus; Clifford, Samuel
jodyphelan/host-pathogen. (2023)
Phelan, Jody
mrc-ide/deterministic-malaria-model: nets_paper. (2023)
Unwin, Juliette; Challenger, Joseph; Watson, O. J.; Hellewell, Joel; FitzJohn, Rich; Sherrard-Smith, Ellie
opensafely/covid_mortality_over_time. (2023)
Nab, Linda; Davy, Simon; Parker, Edward; Hulme, Will
jodyphelan/tbdb. (2023)
Phelan, Jody E.; Menzel, Peter
Relative role of border restrictions, case finding and contact tracing in controlling SARS-CoV-2 in the presence of undetected transmission: a mathematical modelling study. (2023)
Pung, Rachael; Clapham, Hannah E; Russell, Timothy W.; Lee, Vernon J.; Kucharski, Adam J.
dchodge/nambcea. (2022)
Hodgson, David
lshtm-tbmg/tbvax-pub. (2022)
Weerasuriya, Chathika; Clark, Rebecca
opensafely/ckd-coverage-ve. (2022)
Parker, Edward; Horne, Elsie
shk313/diagnostic-test-metaanalysis/CrAg. (2022)
Keddie, Suzanne
epiforecasts/covid.german.forecasts. (2022)
Bosse, Nikos; Abbott, Sam; Funk, Sebastian
fundiversity: Easy Computation of Functional Diversity Indices. (2022)
Gruson, Hugo; Grenié, Matthias
Additional file 1 of Inequalities in the impact of COVID-19-associated disruptions on tuberculosis diagnosis by age and sex in 45 high TB burden countries. (2022)
McQuaid, C. Finn; Henrion, Marc Y. R.; Burke, Rachael M.; MacPherson, Peter; Nzawa-Soko, Rebecca; Horton, Katherine C.
hendersonad/2020_multimorbidity. (2022)
Henderson, Alasdair
raabteam/raab7-analysis. (2022)
Butcher, Robert M. R.; Mccormick, Ian; RAAB Team
PierreMasselot/Paper--2022--Biostatistics--CGAIM. (2022)
Masselot, Pierre
supingling/CancerInDiabetes. (2022)
Ling, Suping
DidDrog11/lassa_underreporting. (2022)
Simons, David
Stan code and input data for estimating adjusted seroprevalence. (2022)
Lucinde, Ruth K.; Mugo, Daisy; Bottomley, Christian; Karani, Angela; Gardiner, Elizabeth; Aziza, Rabia; Gitonga, John N.; Karanja, Henry; Nyagwange, James; Tuju, James; Wanjiku, Perpetual; Nzomo, Edward; Kamuri, Evans; Thuranira, Kaugiria; Agunda, Sarah; Nyutu, Gideon; Etyang, Anthony O.; Adetifa, Ifedayo M. O.; Kagucia, Eunice; Uyoga, Sophie; Otiende, Mark; Otieno, Edward; Ndwiga, Leonard; Agoti, Charles N.; Aman, Rashid A.; Mwangangi, Mercy; Amoth, Patrick; Kasera, Kadondi; Nyaguara, Amek; Ng’ang’a, Wangari; Ochola, Lucy B.; Namdala, Emukule; Gaunya, Oscar; Okuku, Rosemary; Barasa, Edwine; Bejon, Philip; Tsofa, Benjamin; Ochola-Oyier, L. Isabella; Warimwe, George M.; Agweyu, Ambrose; Scott, J. Anthony G.; Gallagher, Katherine E.
epiforecasts/simplified-forecaster-evaluation. (2022)
Abbott, Sam; Bosse, Nikos
seabbs/ecdc-weekly-growth-forecasts. (2022)
Abbott, Sam; Sherratt, Katharine
katiito/rsvvaccines_amr. (2022)
Atkins, Katherine E.; Hodgson, David
Bisaloo/asymptor. (2022)
Gruson, Hugo; actions-user
Estimating national-level measles case–fatality ratios in low-income and middle-income countries: an updated systematic review and modelling study. (2022)
Sbarra, Alyssa N.; Mosser, Jonathan F; Jit, Mark; Ferrari, Matthew; Ramshaw, Rebecca E.; O'Connor, Patrick; Krause, L Kendall; Rogowski, Emma LB; Portnoy, Allison
kelwyres/Kaptive-Web. (2022)
Wick, Ryan; kelwyres; Pan, Alwyn; Stanton, Tom; Watts, Stephen; Lee, Thanh
ISIDLSHTM/CoBeDOA. (2022)
Benest, John
Biometric linkage of longitudinally collected electronic case report forms and confirmation of subject identity: An open framework for Open Data Kit (ODK) and related tools. (2022)
Roberts, Chrissy; Stott, Callum; Lal, Sham; Marks, Michael; Shawe-Taylor, Marianne; Chaudhry, Zain
folder_zip
Umoya omuhle: Infection prevention and control for drug-resistant tuberculosis in South Africa in the era of decentralised care: A whole systems approach. Research Questions 3 and 4_KwaZulu Natal. (2022)
Colvin, Christopher; Swartz, Alison; Kallon, Idriss; Kielmann, Karina; Macgregor, Hayley
Rekyt/funrar. (2022)
Grenié, Matthias; Gruson, Hugo; Silge, Julia; Tucker, Caroline
Use of motorised transport and pathways to childbirth care in health facilities: Evidence from the 2018 Nigeria Demographic and Health Survey. S1 Data. (2022)
Avoka, Cephas Ke-on; Banke-Thomas, Aduragbemi; Beňová, Lenka; Radovich, Emma; Campbell, Oona M. R.
epiverse-trace/blueprints: 0.0.2. (2022)
Jombart, Thibaut; actions-user; Gruson, Hugo; Pavlich-Mariscal, Jaime
GaryNapier/comp_mut. (2022)
Napier, Gary
PierreMasselot/Paper--2017--Nonparametric-L-moment-homogeneity-test. (2022)
Masselot, Pierre
NaomiWaterlow/NextGenFlu_Kenya. (2022)
Waterlow, Naomi
akira-endo/schooldynamics_FluMatsumoto14-15: Simulating respiratory disease transmission within and between classrooms to assess pandemic management strategies at schools. (2022)
Endo, Akira; Uchida, Mitsuo; Liu, Yang; Atkins, Katherine E.; Kucharski, Adam J.; Funk, Sebastian
Additional file 2 of Cluster randomised trials with a binary outcome and a small number of clusters: comparison of individual and cluster level analysis method. (2022)
Thompson, Jennifer A.; Leyrat, Clemence; Fielding, Katherine L.; Hayes, Richard J.
ARUKCFE/BmiAlgorithm. (2022)
Kopec-Harding, Kamilla; Costello, Ruth
akira-endo/Intro-PMCMC. (2022)
Endo, Akira; Van leeuwen, Edwin; Jomaba, M
akira-endo/monkeypox_heavytail: Heavy-tailed sexual contact networks and the epidemiology of monkeypox outbreak in non-endemic regions. (2022)
Endo, Akira; Murayama, Hiroaki; Abbott, Sam; Ratnayake, Ruwan; Pearson, Carl A. B.; Edmunds, W. John; Fearon, Elizabeth; Funk, Sebastian
cmmid/SA2UK: CEA submission. (2022)
Pearson, Carl A. B.; Russell, Timothy W.; Kucharski, Adam J.
hamishgibbs/facebook_population_2020_2021. (2022)
Gibbs, Hamish; Waterlow, Naomi R.; Cheshire, James; Danon, Leon; Liu, Yang; Grundy, Chris; Kucharski, Adam J.; Eggo, Rosalind M.
ragreener1/deliveroo-scraper. (2022)
Greener, Robert
ragreener1/justeat-scraper. (2022)
Greener, Robert
supingling/BiasAnalysis. (2022)
Ling, Suping
RutendoMuzambi/InfectionsCognitionNeuroimaging. (2022)
Muzambi, Rutendo
mbkoltai/RSV-resurgence-model. (2022)
Koltai, Mihaly; Krauer, Fabienne
Mapping the evidence of plant-based alternative foods: A systematic literature review protocol on nutritional, health, and environmental impacts. (2022)
Nájera Espinosa, Sarah; Pastorino, Silvia; Scheelbeek, Pauline
Code: Evaluation of age-specific causes of death in the context of the Italian longevity transition. (2022)
Nigri, Andrea; Aburto, José Manuel; Basellini, Ugofilippo; Bonetti, Marco
PierreMasselot/cirls. (2022)
Masselot, Pierre
cgaim: Constrained Groupwise Additive Index Models. (2022)
Masselot, Pierre
francescochecchi/acute_malnutrition_predictive_models. (2022)
Checchi, Francesco; Frison, Severine; Warsame, Abdihamid
PierreMasselot/cgaim. (2022)
Masselot, Pierre
Qualitative and Quantitative Data for Tuberculosis Infection Prevention and Control in KwaZulu-Natal and Western Cape, South Africa, 2018-2021. (2022)
Grant, Alison D.; Kielmann, Karina
MatthewHiggins2017/bioconda-PrimedRPA. (2022)
Higgins, Matthew
ShujiaHuang/qmplot. (2022)
Huang, Shujia; Libiseller-Rgger, Julian
francescochecchi/mortality_capture_recapture_analysis. (2022)
Checchi, Francesco
raphaelvallat/pingouin. (2022)
Vallat, Raphael; Appelhoff, Stefan; Spaak, Eelke; JElfner; systole-docs; Tan, Gansheng; Paulino, Arthur; Dominic C.; Leicas; Nárai, Ádám; Wallan, Samuel; Barthélemy, Quentin; Weixin, Jin; Singaravelan, Karthikeyan; Crabtree, Kyle N.; Punčochář, Michal; Legrand, Nicolas; Jolly, Eshin; Cederstrand, Erik; To, Isaac; Hale, Jeff; Kahle, Michal; Mathot, Sebastiaan; Wase, Viktor; Filipec, Vojtech; gedeck; Libiseller-Egger, Julian; xfz329
Duration of protection of CoronaVac plus heterologous BNT162b2 booster in the Omicron period in Brazil. (2022)
Cerqueira-Silva, Thiago; de Araujo Oliveira, Vinicius; Paixão, Enny S.; Júnior, Juracy Bertoldo; Penna, Gerson O.; Werneck, Guilherme L.; Pearce, Neil; Barreto, Maurício L.; Boaventura, Viviane S.; Barral-Netto, Manoel
NaomiWaterlow/NhaTrang_flu_rsv_interaction. (2022)
Waterlow, Naomi
fkrauer/RSV-seasonality-public. (2022)
Krauer, Fabienne
chrissyhroberts/OMR_LSHTM. (2022)
Roberts, Chrissy
LinaMadaniyazi/Assessing-seasonality-and-the-role-of-its-potential-drivers-in-environmental-epidemiology-a-tutorial. (2022)
Madaniyazi, Lina; Tobias, Aurelio; Kim, Yoonhee; Chung, Yeonseung; Armstrong, Ben; Hashizume, Masahiro
ALPHA HIV Incidence and Mortality Data, Kisesa 1994-2016. (2022)
Kisesa HIV Open Cohort study; ALPHA Network
tomsumner/Variance_SA_TB. (2022)
Sumner, Tom
Additional Data and Code from "Increased energy use for adaptation significantly impacts mitigation pathways". (2022)
Colelli, Francesco Pietro; Emmerling, Johannes; Mistry, Malcolm; Marangoni, Giacomo; De Cian, Enrica
TBVAX Model. (2022)
Clark, Rebecca; Mukandavire, Christinah; Weerasuriya, Chathika; Bakker, Roelof; White, Richard G
zadyson/SNV_Stats_Generator. (2022)
Dyson, Zoe Anne
emiliecourtin/maternityleave. (2022)
Courtin, Emilie
Supplementary appendix 1b of Oliphant NP, Ray N, Curtis A et al. Optimising scale and deployment of community health workers in Sierra Leone: a geospatial analysis. 2022. (2022)
Oliphant, NP; Ray, Nicolas; Curtis, Andrew; Musa, Elizabeth; Sesay, Momodou; Kandeh, Joseph; Kamara, Anitta; Chimoun, Ebeny Francois Temgbait; Jackson, Debra; Doherty, Tanya
Female Genital Schistosomiasis - Medical Training Device. (2022)
Roberts, Chrissy; Bustinduy, Amaya
Swabbable Vagina and Vulva - Medical training device. (2022)
Roberts, Chrissy; Bustinduy, Amaya
epiforecasts/scoringutils. (2022)
Bosse, Nikos; Abbott, Sam; Reich, Nicholas G; Funk, Sebastian
mrc-ide/covid-vaccine-impact-orderly. (2022)
Barnsley, Gregory; Watson, Oliver J
epiverse-trace/linelist. (2022)
Jombart, Thibaut
kasimallel/Modelling-analysing-GN-ABR-for-transmission-in-a-Chilean-semi-rural-community. (2022)
Allel, Kasim
FJRubio67/LBANS/. (2022)
Eletti, Alessia; Marra, Giampiero; Quaresma, Manuela; Radice, Roslaba; Rubio, Francisco J
PierreMasselot/Paper--2022--EE--Heat_climate. (2022)
Masselot, Pierre
Additional file 1 of Planning a method for covariate adjustment in individually randomised trials: a practical guide. (2022)
Morris, Tim P.; Walker, A. Sarah; Williamson, Elizabeth J.; White, Ian R.
Additional file 2 of Planning a method for covariate adjustment in individually randomised trials: a practical guide. (2022)
Morris, Tim P.; Walker, A. Sarah; Williamson, Elizabeth J.; White, Ian R.
katholt/RedDog. (2022)
d-j-e; Holt, Kathryn E.; Wyres, Kelly L
Social contact data for Taiwan. (2022)
Fu, Yang-Chih; Wang, Da-Wei; Chuang, Jen-Hsiang; Fu, Han
erees/leptoSerology. (2022)
Rees, Eleanor
jmaburto/ex_USA_racial-ethnic_differences. (2022)
Aburto, José Manuel
qleclerc/mrsa_phage_dynamics. (2022)
Leclerc, Quentin J.
jenAdavidson/sccs_fluvacc_cvd. (2022)
Davidson, Jennifer
skiniry/Trips-Viz. (2022)
Kiniry, Stephen J; Judge, Ciara
dchodge/hero-study: Version submitted with WOR reviewers comments. (2022)
Hodgson, David; Abbott, Sam
Additional file 1 of Locating and testing the healthy context paradox: examples from the INCLUSIVE trial. (2022)
Melendez-Torres, G. J.; Warren, Emily; Ukoumunne, Obioha C; Viner, Russell; Bonell, Chris
Omran revisited. (2022)
Sudharsanan, Nikkil; Aburto, José Manuel; Riffe, Tim; van Raalte, Alyson
alexlewin24/BLSEM. (2022)
Wheater, Stuart; Lewin, Alex
Stata Do Files for pooling and analysis. (2022)
Sweeney, Sedona
Landmarking: Analysis using Landmark Models. (2022)
Barrott, Isobel; Barrett, Jessica; Keogh, Ruth; Sweeting, Michael; Stevens, David
zadyson/TyphiNET. (2022)
Cerdeira, Louise; Dyson, Zoe Anne
Participatory Visual Methods with caregivers of children with Congenital Zika Syndrome in Colombia: A case study. (2022)
Reichenberger, Veronika
description
francesccoll/powerbacgwas. (2022)
Coll, Francesc
Dataset used in the assessment of the article "Basic urban services fail to neutralise environmental determinants of 'rattiness', a composite metric of rat abundance". (2022)
Carvalho-Pereira, Ticiana; Eyre, Max T; Zeppelini, Caio G; Espirito Santo, Vivian F; Santiago, Diogo C; Santana, Roberta; Palma, Fabiana; Reis, Marbrisa; Lustosa, Ricardo; Khalil, Hussein; Diggle, Peter J; Giorgi, Emanuele; Costa, Federico; Begon, Michael
metasens: Statistical Methods for Sensitivity Analysis in Meta-Analysis. (2022)
Schwarzer, Guido; Carpenter, James R.; Rücker, Gerta
gwenknight/strain_growth. (2022)
Knight, Gwen; Baede, Valérie O.
epiforecasts/covid19-hospital-activity. (2022)
Meakin, Sophie; Abbott, Sam
weerasuriya/tbconvax-pcb. (2022)
Weerasuriya, Chathika Krishan
Genome details for the simulated-read tests. (2022)
Wick, Ryan R.; Holt, Kathryn E.
esnightingale/covid_deaths_spatial. (2022)
Nightingale, Emily
AntonS-bio/entropy. (2022)
Spadar, Anton
emilyherrett/qrisk_cprd_aurum: QRISK Aurum bundle version 2.0. (2022)
Davidson, Jennifer; Herrett, Emily; Strongman, Helen; Gadd, Sarah
SoCFourier. (2021)
Silver, Matt
description
liang-yu12/vd_covid. (2021)
Lin, Liang Yu
Extended Data: Iron supplementation of breastfed Gambian infants from 6 weeks to 6 months of age: Protocol for a randomised controlled trial. (2021)
Stelle, Isabella; Bah, Mamadou; Silverio, Sergio A.; Verhoef, Hans; Comma, Ebrima; Prentice, Andrew M.; Moore, Sophie E.; Cerami, Carla
jarvisc1/2020-reporting. (2021)
Jarvis, Christopher I.; Jombart, Thibaut
r-spatialecology/shar. (2021)
Hesselbarth, Maximilian; actions-user; Sciaini, Marco; Hereñú, Darío; Gruson, Hugo; Etherington, Thomas
epiforecasts/epinowcast. (2021)
Abbott, Sam; Monticone, Pietro
supingling/overtreatment. (2021)
Ling, Suping
Replication Data for: Mortality in rural coastal Kenya measured using the Kilifi Health and Demographic Surveillance System: a 16-year descriptive analysis. (2021)
Otiende, Mark; Bauni, Evasius; Nyaguara, Amek; Amadi, David; Nyundo, Christopher; Tsory, Emmanuel; Walumbe, David; Kinuthia, Michael; Kihuha, Norbert; Kahindi, Michael; Nyutu, Gideon; Moisi, Jennifer; Deribew, Amare; Agweyu, Ambrose; Marsh, Kevin; Tsofa, Benjamin; Bejon, Philip; Bottomley, Christian; Williams, Thomas N; Scott, J Anthony G
PierreMasselot/Paper--2021--JRSS_SA--Machine_Learning_Thresholds. (2021)
Masselot, Pierre
STATA Do files for "Factors associated with excess mortality in the first wave of COVID-19 pandemic in the UK: a cohort analysis using the Clinical Practice Research Databank". (2021)
Strongman, Helen; Carreira, Helena
folder_zip
hamishgibbs/ghana_rt_npi_mobility. (2021)
Gibbs, Hamish
Decision Modelling for Health Economic Evaluation R Code. (2021)
Williams, Jack; Naylor, Nichola; Briggs, Andrew
ropensci/drake. (2021)
Landau, Will; Landau, Will; Bond-Lamberty, Ben; Strasiotto, Matthew; McBain, Miles; Müller, Kirill; Mahr, TJ; Hughes, Ellis; Ross, Noam; Bell, Kendon; Ingerson, Sean; Aden-Buie, Garrick; Gomolka, Matthias; Knoblauch, Nicholas; Albers, Sam; brendanf; evalparse; Denney, Bill; Muir, Chris; Barrett, Malcolm; Krug, Rainer M; Kehayas, Vassilis; Schratz, Patrick; Zhao, Bruce; Hlynur; Gruson, Hugo; Jasper; Ooms, Jeroen; Walthert, Lorenz; Dray, Matt
d-mayerova/Vaccine_confidence_Albania. (2021)
Mayerová, Daniela; Abbas, Kaja M.
o2geosocial: Reconstruction of Transmission Chains from Surveillance Data. (2021)
Robert, Alexis; Funk, Sebastian; Kucharski, Adam J.; Jombart, Thibaut
petedodd/NotTB. (2021)
Dodd, Peter J
NickyMcC/CasualAgeMixing. (2021)
Mccreesh, Nicky
Analysis of non-communicable disease reports contributing to UN high-level meeting process (2000-2020). (2021)
Millington, James; Okpako, Oritsematosan; Herrick, Clare
MatchThem: Matching and Weighting Multiply Imputed Datasets. (2021)
Pishgar, Farhad; Greifer, Noah; Leyrat, Clemence; Stuart, Elizabeth
reichlab/covidHubUtils. (2021)
Wang, Serena Yijin; Stark, Ariane; Evan Ray; Bosse, Nikos; Reich, Nicholas G; Sherratt, Katharine; Shah, Apurv; Wattanachit, Nutcha; Khoale1096; Huang, Yuxin David; Gerding, Aaron; Gruson, Hugo; Cramer, Estee; Shandross, Li; Abbott, Sam; Funk, Sebastian
LSHTM-ORK/ODK_Biometrics. (2021)
Roberts, Chrissy; Stott, Callum
yangclaraliu/armslist_scraping. (2021)
Drake, Coleman; Hernandez, Ashley; Liu, Yang; Schwartz, Adam H.; Sundaram, Maria
Code to replicate "Quantifying impacts of the COVID-19 pandemic through life expectancy losses". (2021)
Aburto, José Manuel; Schöley, Jonas; Kashnitsky, Ilya; Knowles, Ian; Zhang, Luyin; Rahal, Charles; Missov, Trifon I; Dowd, Jennifer B; Mills, Melinda C; Kashyap, Ridhi
opensafely/anticoagulants-research. (2021)
Wong, Angel; Bacon, Seb; Walker, Alex; Davy, Simon; Inglesby, Peter; MacKenna, Brian
gwenknight/hai_first_wave. (2021)
Knight, Gwen
nicholasdavies/amr-competition-diversity: Full release for publication. (2021)
Davies, Nicholas G.
CSV-format data for: Increased mortality in community-tested cases of SARS-CoV-2 lineage B.1.1.7. (2021)
Davies, Nicholas G.
mexhaz: Mixed Effect Excess Hazard Models. (2021)
Charvat, Hadrien; Belot, Aurélien
Analysis for: The changing relationship between genetic risk and cognitive decline across birth cohorts. (2021)
Courtin, Emilie; Greener, Robert; Weiss, Jordan; Ware, Erin B.; Dowd, Jennifer B.; Rehkopf, David
Optimising health and economic impacts of COVID-19 vaccine rollout strategies in the WHO European Region. (2021)
Liu, Yang; Sandmann, Frank G.; Barnard, Rosanna C.; Pearson, Carl A.B.; CMMID Working-19 Working Group; Pastore, Roberta; Pebody, Richard; Flasche, Stefan; Jit, Mark
katholt/srst2. (2021)
Inouye, Michael; Dashnow, Harriet; Pope, Bernie; Wick, Ryan; Holt, Kathryn E.
PierreMasselot/emdr. (2021)
Masselot, Pierre
Supplemental material for: The Long and Winding Road: Archiving and Re-Using Qualitative Data from 12 Research Projects Spanning 16 Years. (2021)
Dodds, Catherine; Keogh, Peter; Bourne, Adam; McDaid, Lisa; Squire, Corinne; Weatherburn, Peter; Young, Ingrid
CoMix social contact data (UK). (2021)
Gimma, Amy; Wong, Kerry LM; Van Xandvoort, Kevin; Jarvis, Christopher I.; Edmunds, W. John
Additional file 1 of A framework for handling missing accelerometer outcome data in trials. (2021)
Tackney, Mia S.; Cook, Derek G.; Stahl, Daniel; Ismail, Khalida; Williamson, Elizabeth; Carpenter, James
johntaz/HDPS-Stata-Demo. (2021)
Tazare, John
WOMAN-PharmacoTXA Trial: Pharmacokinetics and pharmacodynamics of tranexamic acid in women having caesarean section birth - Extended data. (2021)
Shakur-Still, Haleema; Arribas, Monica; Roberts, Ian; Chaudhri, Rizwana; Geer, Amber; Prowse, Danielle; Lubeya, Mwansa Ketty; Kayani, Aasia; Javaid, Kiran; Grassin Delyle, Stanislas
description
BayesSUR: Bayesian Seemingly Unrelated Regression. (2021)
Banterle, Marco; Zhao, Zhi; Bottolo, Leonardo; Richardson, Sylvia; Leoncio, Waldir; Lewin, Alexandra; Zucknick, Manuela; Zhao, Zhi
Supplementary data files & video for Carrasco-Tenezaca published in the Journal of the Royal Society Interface, 'The relationship between house height and mosquito house entry: an experimental study in rural Gambia. (2021)
Lindsay, Steve; Carrasco-Tenezaca, Majo; Jawara, Musa; Bradley, John; D'Alessandro, Umberto; Jeffries, David; Pinder, Margaret; Knudsen, Jakob
johntaz/HDPS-Diagnostics. (2021)
Tazare, John
Healthcare use by people who use illicit opioids (HUPIO): development of a cohort based on electronic primary care records in England (extended data). (2021)
Lewer, Dan; Padmanathan, Prianka; Arfeen, Muhammad Najam Ul; Denaxas, Spiros; Forbes, Harriet; Gonzalez-Izquierdo, Arturo; Hickman, Matt
Additional file 2 of Comparative diagnostic accuracy studies with an imperfect reference standard – a comparison of correction methods. (2021)
Umemneku Chikere, Chinyereugo M; Wilson, Kevin J; Allen, A Joy; Vale, Luke
Eyedeet/Systematic_review. (2021)
Suffel, Anne Marie
Additional file 2 of Complex emergencies and the control and elimination of neglected tropical diseases in Africa: developing a practical approach for implementing safe and effective mapping and intervention strategies. (2021)
Kelly-Hope, Louise A.; Sanders, Angelia M.; Harding-Esch, Emma; Willems, Johan; Ahmed, Fatima; Vincer, Fiona; Hill, Rebecca
NickyMcC/WithinClinics. (2021)
McCreesh, Nicky
ISAC Protocol 19_129 - Common infections and incident dementia: a historical cohort study using UK primary and secondary care data. (2021)
Muzambi, Rutendo; Bhaskaran, Krishnan; Brayne, Carol; Chaturvedi, Nish; Smeeth, Liam; Warren-Gash, Charlotte
Validation of Correlates of Risk of TB Disease in High Risk Populations (CORTIS-HR) Study: Public, subject-level RISK11 signature scores and metadata. (2021)
Mendelsohn, Simon C; Fiore-Gartland, Andrew; Penn-Nicholson, Adam; Mulenga, Humphrey; Kimbung, Stanley; Borate, Bhavesh; Hadley, Katie; Hikuam, Chris; Musvosvi, Munyaradzi; Bilek, Nicole; Erasmus, Mzwandile; Jaxa, Lungisa; Raphela, Rodney; Nombida, Onke; Kaskar, Masooda; Sumner, Tom; White, Richard G; Innes, Craig; Brumskine, William; Hiemstra, Andriëtte; Malherbe, Stephanus T; Hassan-Moosa, Razia; Tameris, Michèle; Walzl, Gerhard; Naidoo, Kogieleum; Churchyard, Gavin; Scriba, Thomas J; Hatherill, Mark
CEmimix ADO file. (2021)
Leurent, Baptiste; Cro, Suzie
A Comparison of Different Community Models of ART Delivery Amongst Stable HIV+ Patients in two Urban Settings in Zambia - Study Protocol. (2021)
Limbada, Mohammed; Ayles, Helen; Macleod, David
picture_as_pdf
LSHTM Data Compass Procedures. (2021)
LSHTM Library & Archives Service
katholt/sonneityping: v20210201. (2021)
Holt, Kathryn E.; Hawkey, Jane; Paranagama, Kalani
Projecting the risk of mosquito-borne diseases in a warmer and more urbanised world: a multi-model multi-scenario intercomparison study. (2021)
Colón-González, Felipe J; Sewe, Maquins Odhiambo; Tompkins, Adrian M; Sjödin, Henrik; Casallas, Alejandro; Rocklöv, Joacim; Caminade, Cyril; Lowe, Rachel
PierreMasselot/primr. (2021)
Masselot, Pierre
martyn1fyles/HouseholdContactTracing. (2021)
Abbott, Sam; Fyles, Martyn
BugBunny/Pathways_to_Low_Fertility. (2021)
Timaeus, Ian
cmmid/SA2UK. (2021)
Pearson, Carl A. B.; Russell, Timothy W.; Kucharski, Adam J.
Supplementary Appendix 1b of "Optimizing geographical accessibility to primary health care at community level in Niger: a geospatial analysis". (2021)
Oliphant, Nicholas P; Ray, Nicolas; Bensaid, Khaled; Ouedraogo, Adama; Gali, Asma Yaroh; Habi, Oumarou; Maazou, Ibrahim; Panciera, Rocco; Muñiz, Maria; Manda, Samuel OM; Sy, Zeynabou; Jackson, Debra; Doherty, Tanya
supingling/glycaemic-control. (2021)
Ling, Suping
ReproducibiliTea LSHTM. (2021)
Jaquiery, Matt; Schultze, Anna
WINRATIOTEST: Stata module to calculate the unmatched Win Ratio for prioritised outcomes. (2021)
Gregson, John; Collier, Timothy
o2geosocial. (2020)
Robert, Alexis; Funk, Sebastian; Kucharski, Adam J.
ptti/ptti: Modelling the health and economic impacts of different testing and tracing strategies for COVID-19 in the UK. (2020)
Colbourn, Tim; Waites, William; Manheim, David; Sturniolo, Simone; Kerr, Cliff C.; Panovska-Griffiths, Jasmina; Colbourn, Greg
johntaz/COVID-Collateral. (2020)
Tazare, John
PierreMasselot/Sedimentation_analysis. (2020)
Masselot, Pierre
Crimean-congo haemorrhagic fever virus detected in Rhipicephalus ticks feeding on cattle in an abattoir, Uganda. (2020)
Stubbs, Sam
Kleborate v2.0.0. (2020)
Holt, Kathryn E.; Lam, Margaret; Wick, Ryan
COVID-SCORE: A global survey to assess public perceptions of government responses to COVID-19 (COVID-SCORE-10). (2020)
Lazarus, Jeffrey V.; Ratzan, Scott; Palayew, Adam; Billari, Francesco C.; Binagwaho, Agnes; Kimball, Spencer; Larson, Heidi J.; Melegaro, Alessia; Rabin, Kenneth; White, Trenton M.; El-Mohandes, Ayman
akira-endo/COVID19_backwardtracing. (2020)
Endo, Akira; Kucharski, Adam J.
Comparison of small-sample standard-error corrections for generalised estimating equations in stepped wedge cluster randomised trials with a binary outcome: A simulation study. (2020)
Thompson, Jennifer
CLAN: Stata module to perform cluster-level analysis of cluster randomised trials. (2020)
Nash, Stephen; Thompson, Jennifer; Leurent, Baptiste
kaitejohnson/School_reopening. (2020)
Johnson, Kaitlyn E.
gasparrini/2017_lopezbernal_IJE_codedata. (2020)
Lopez-Bernal, James; Cummins, Steven; Gasparrini, Antonio
Data for: "Foot thermometry with mHeath-based supplementation to prevent diabetic foot ulcers: A randomized controlled trial". (2020)
Lazo-Porras, Maria; Bernabe-Ortiz, Antonio; Taype-Rondan, Alvaro; Gilman, Robert H.; Malaga, German; Manrique, Helard; Neyra, Luis; Calderon, Jorge; Pinto, Miguel; Armstrong, David G.; Montori, Victor M.; Miranda, J. Jaime
tomsumner/Latency_Model_Comparison_Public. (2020)
Sumner, Tom
LSHTM-ORK/OpenMakingKit. (2020)
Roberts, Chrissy; LSHTM Global Health Analytics Group
sysbio-curie/exact-stoch-log-mod. (2020)
Koltai, Mihály
LSHTM-ORK/EDK_Automation_Tools. (2020)
Roberts, Chrissy; LSHTM Global Health Analytics Group
sbfnk/rbi.helpers. (2020)
Funk, Sebastian; Finger, Flavio
Detection of a novel insect-specific flavivirus across ecologically diverse populations of Aedes aegypti on the Caribbean Island of Saint Lucia. (2020)
Walker, Thomas; Jeffries, Claire L.; Yakob, Laith; White, Mia; Wilson, Louisia
idmodelr: Infectious Disease Model Library and Utilities. (2020)
Abbott, Sam; Endo, Akira
seabbs/getTBinR. (2020)
Abbott, Sam; Bekker-Nielsen Dunbar, Maria; Smith, Arfon
ISAC Protocol 17_197R: The effect of renin-angiotensin system inhibitors on haemoglobin. (2020)
Mansfield, Kathryn E.; Nitsch, Dorothea; Smeeth, Liam; Iwagami, Masao; Johnston, Rosalynd; Tomlinson, Laurie A.
adegenet: Exploratory Analysis of Genetic and Genomic Data. (2020)
Jombart, Thibaut; Kamvar, Zhian N.; Collins, Caitlin; Luštrik, Roman; Beugin, Marie-Pauline; Knaus, Brian J; Solymos, Peter; Mikryukov, Vladimir; Schliep, Klaus; Maié, Tiago; Morkovsky, Libor; Ahmed, Ismail; Cori, Anne; Calboli, Federico; Ewing, RJ; Michaud, Frédéric; DeCamp, Rebecca; Courtiol, Alexandre
Anonymised data for: "Predictors of change of health workers’ knowledge and skills after the Helping Mothers Survive Bleeding after Birth (HMS BAB) in-facility training in Tanzania". (2020)
Alwy Al-beity, Fadhlun; Pembe, Andrea Barnabas; Marrone, Gaetano; Baker, Ulrika; Hanson, Claudia
Religion, Cooperation, Fertility, and Child Outcomes. (2020)
Shaver, John; Power, Eleanor A.; Purzycki, Benjamin Grant; Shenk, Mary K; Bulbulia, Joseph A.; Sear, Rebecca; Sosis, Richard; Watts, Joseph
Supplementary data for “Comparisons of Staphylococcus aureus infection and other outcomes between users of angiotensin-converting-enzyme inhibitors and angiotensin II receptor blockers: lessons for COVID-19 from a nationwide cohort study”. (2020)
Tomlinson, Laurie A.; Iwagami, Masao; Bidulka, Patrick; Wong, Angel Y.S.
akira-endo/COVID19_clustersize: Estimating the amount of superspreading using outbreak sizes of COVID-19 outside China. (2020)
Endo, Akira; Abbott, Sam; Kucharski, Adam J.; Funk, Sebastian
timriffe/MacroShape. (2020)
Riffe, Tim; Aburto, José Manuel
cmmid/ringbp. (2020)
Hellewell, Joel
Multi-Country Model Application for RSV Cost-Effectiveness Policy (McMarcel). (2020)
Willem, Lander; Xiao, Li; Antillon, Marina; Bilcke, Joke; Jit, Mark; Beutels, Philippe
The DIPLOMATIC Collaboration, Work Package2_Coredata Set. (2020)
von Wissmann, Beatrix; Gadama, Luis; Dube, Queen; Membe-Gadama, Gladys; Stock, Sarah; Chodzaza, Elizabeth; Masesa, Clemens; Crampin, Amelia C.; Wood, Rachael
Female Reproductive System. (2020)
Roberts, Chrissy
Microscope Smartphone Adapter (Customisable). (2020)
Roberts, Chrissy
description
Every Newborn INDEPTH (EN-INDEPTH) Study - Additional Materials. (2020)
Lawn, Joy E.; Waiswa, Peter; Waiswa, Joseph Akuze; Kwesiga, Doris; Blencowe, Hannah; Baschieri, Angela; Gordeev, Vladimir S.; EN-INDEPTH Collaborator Group
grid_on
Code for simulating release of Wolbachia mosquitoes in Indonesia and assessing their cost effectiveness in different places over time. (2019)
Brady, Oliver J.; Bastos, Leonardo
obrady/Wolbachia_CE. (2019)
Brady, Oliver J.; Bastos, Leonardo
denvax: Simple Dengue Test and Vaccinate Cost Thresholds. (2019)
Pearson, Carl; Abbas, Kaja M.; Clifford, Samuel; Flasche, Stefan; Hladish, Thomas J.
convertCMC: Convert century month codes to Stata dates. (2019)
Timaeus, Ian
seabbs/SpeedyMarkov. (2019)
Abbott, Sam
sbfnk/epimixr. (2019)
Funk, Sebastian
gasparrini/2019_armstrong_EHP_Rcodedata. (2019)
Gasparrini, Antonio
seabbs/EstZoonoticTB. (2019)
Abbott, Sam
gwenknight/empiricprescribing. (2019)
Knight, Gwen
FluMoDL: Influenza-Attributable Mortality with Distributed-Lag Models. (2019)
Lytras, Theodore; Gasparrini, Antonio; Wang, Shuangcai
CSFLAM_data set revised. (2019)
Kwizera, Richard; Cresswell, Fiona V.; Mugumya, Gerald; Okirwoth, Micheal; Kagimu, Enock; Bangdiwala, Ananta S.; Williams, Darlisha A.; Rhein, Joshua; Boulware, David R.; Meya, David B.
seabbs/ModelTBBCGEngland. (2019)
Abbott, Sam
jstockwin/EpiEstimApp: v1.0.0. (2019)
Stockwin, Jake; Thompson, Robin; Cori, Anne; Jombart, Thibaut; Kamvar, Zhian N.; FitzJohn, Rich
The SASA! study: a cluster randomised trial to assess the impact of a violence and HIV prevention programme in Kampala, Uganda. (2019)
Watts, Charlotte; Devries, Karen; Kiss, Ligia; Abramsky, Tanya; Kyegombe, Nambusi; Michau, Lori
mrc-ide/EpiEstim: 2.2-3. (2019)
Cori, Anne; Kamvar, Zhian N.; Stockwin, Jake; Jombart, Thibaut; Thompson, Robin; Dahlqwist, Elisabeth
SWPERMUTE: Stata module to compute Permutation tests for Stepped-Wedge Cluster-Randomised Trials. (2019)
Thompson, Jennifer
LSHTM-ORK/OBD. (2019)
Roberts, Chrissy; LSHTM Global Health Analytics Group
PierreMasselot/Paper--2019--Air-pollution-warning-system. (2019)
Masselot, Pierre
Violence against children and natural disasters: A systematic review and meta-analysis of quantitative evidence. (2019)
Cerna-turoff, Ilan; Fischer, Hanna-Tina; Mayhew, Susannah; Devries, Karen
CEmimix Stata do-file - First version. (2019)
Leurent, Baptiste; Gomes, Manuel; Cro, Suzie; Wiles, Nicola; Carpenter, James R.
An experimental investigation of social preferences, their determinants and their role in the labour supply function. (2019)
Smith, Richard
extended data for protocol. (2019)
Sabherwal, Shalinder
migariane/HETMOR-Causal-Inference: Effect Modification and Collapsibility in Evaluations of Public Health Interventions. (2019)
Fernandez, Miguel Angel Luque; Redondo, Daniel
migariane/cvAUROC: Cross-validated AUC for Stata users. (2019)
Fernandez, Miguel Angel Luque
anastasiachtz/COMMAND_stan/. (2019)
Chatzilena, Anastasia; Van Leeuwen, Edwin
Supplementary Table 1 from Cross-cultural evidence does not support universal acceleration of puberty in father-absent households. (2019)
Sear, Rebecca; Sheppard, Paula; Coall, David A
migariane/Stillbirth: Analysis Stillbirth risk by SES in Spain. (2019)
Fernandez, Miguel Angel Luque; Thomas, Aurielle; Gelaye, Bizu; Racape, Judith; Sanchez-Perez, Maria Jose; Williams, Michelle A.
migariane/ColliderApp: ColliderAppLuque. (2019)
Fernandez, Miguel Angel Luque; Schomaker, Michael; Redondo-Sanchez, Daniel; Perez, Maria Jose Sanchez; Vaidya, Anand; Schnitzer, Mireille E.
migariane/EASP_NET_SURV: Tutorial Net Survival. (2019)
Fernandez, Miguel Angel Luque
A High-Resolution (0.25 degree) Historical Global Gridded Dataset of Climate Extreme Indices (1970-2016) using GLDAS data. (2019)
Mistry, Malcolm Noshir
PierreMasselot/hhws. (2019)
Masselot, Pierre
xiangfstats/GenieR: A final release. (2019)
Xiang, Fei; Frost, Simon
Engagement in agricultural work is associated with reduced leisure time among Agta hunter-gatherers. (2019)
Dyble, Mark; Thorley, Jack; Page, Abigail E.; Smith, Daniel; Migliano, Andrea Bamberg
Household air pollution in Nairobi's slums: A long-term policy evaluation using participatory system dynamics. (2019)
Dianati, K.; Zimmermann, N.; Milner, James; Muindi, K.; Ezeh, A.; Chege, M.; Mberu, B.; Kyobutungi, C.; Fletcher, H.; Wilkinson, P.; Davies, M.
Data from: Process evaluation of a national primary eye care programme in Rwanda. (2018)
Yip, Jennifer L. Y.; Bright, Tess; Ford, Sebastian; Mathenge, Wanjiku; Faal, Hannah
YLubell/SEA-CTN: surveillance-poct. (2018)
Chandna, Arjun; White, L.J.; Pongvongsa, T; Mayxay, M; Newton, P.N.; Day, N.P.J.; Lubell, Yoel
outbreaker2: Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data. (2018)
Jombart, Thibaut; Campbell, Finlay; Fitzjohn, Richard
EN-BIRTH Data Collection Tools. (2018)
Day, Louise Tina; Ruysen, Harriet; Gordeev, Vladimir S.; Gore-langton, Georgia R.; Boggs, Dorothy; Cousens, Simon; Moxon, Sarah G.; Blencowe, Hannah; Baschieri, Angela; Rahman, Ahmed Ehsanur; Tahsina, Tazeen; Zaman, Sojib Bin; Hossain, Tanvir; Rahman, Qazi Sadeq-ur; Ameen, Shafiqul; Arifeen, Shams El; KC, Ashish; Shrestha, Shree Krishna; KC, Naresh P.; Singh, Dela; Jha, Anjani Kumar; Jha, Bijay; Rana, Nisha; Basnet, Omkar; Joshi, Elisha; Paudel, Asmita; Shrestha, Parashu Ram; Jha, Deepak; Bastola, Ram Chandra; Ghimire, Jagat Jeevan; Paudel, Rajendra; Salim, Nahya; Shamba, Donat; Manji, Karim; Shabani, Josephine; Shirima, Kizito; Mkopi, Namala; Mrisho, Mwifadhi; Manzi, Fatuma; Jaribu, Jennie; Kija, Edward; Assenga, Evelyne; Kisenge, Rodrick; Pembe, Andrea; Hanson, Claudia; Mbaruku, Godfrey; Masanja, Honorati; Lawn, Joy E.
EN-BIRTH Data Collector Training - Handbook and Manual. (2018)
Day, Louise Tina; Ruysen, Harriet; Gordeev, Vladimir S.; Gore-langton, Georgia R.; Boggs, Dorothy; Cousens, Simon; Moxon, Sarah G.; Blencowe, Hannah; Baschieri, Angela; Rahman, Ahmed Ehsanur; Tahsina, Tazeen; Zaman, Sojib Bin; Hossain, Tanvir; Rahman, Qazi Sadeq-ur; Ameen, Shafiqul; Arifeen, Shams El; KC, Ashish; Shrestha, Shree Krishna; KC, Naresh P.; Singh, Dela; Jha, Anjani Kumar; Jha, Bijay; Rana, Nisha; Basnet, Omkar; Joshi, Elisha; Paudel, Asmita; Shrestha, Parashu Ram; Jha, Deepak; Bastola, Ram Chandra; Ghimire, Jagat Jeevan; Paudel, Rajendra; Salim, Nahya; Shamba, Donat; Manji, Karim; Shabani, Josephine; Shirima, Kizito; Mkopi, Namala; Mrisho, Mwifadhi; Manzi, Fatuma; Jaribu, Jennie; Kija, Edward; Assenga, Evelyne; Kisenge, Rodrick; Pembe, Andrea; Hanson, Claudia; Mbaruku, Godfrey; Masanja, Honorati; Lawn, Joy E.
EN-BIRTH Data Collector Training - Supporting Annexes. (2018)
Day, Louise Tina; Ruysen, Harriet; Gordeev, Vladimir S.; Gore-langton, Georgia R.; Boggs, Dorothy; Cousens, Simon; Moxon, Sarah; Blencowe, Hannah; Baschieri, Angela; Rahman, Ahmed Ehsanur; Tahsina, Tazeen; Zaman, Sojib Bin; Hossain, Tanvir; Rahman, Qazi Sadeq-ur; Ameen, Shafiqul; Arifeen, Shams El; KC, Ashish; Shrestha, Shree Krishna; KC, Naresh P.; Singh, Dela; Jha, Anjani Kumar; Jha, Bijay; Rana, Nisha; Basnet, Omkar; Joshi, Elisha; Paudel, Asmita; Shrestha, Parashu Ram; Jha, Deepak; Bastola, Ram Chandra; Ghimire, Jagat Jeevan; Paudel, Rajendra; Salim, Nahya; Shamba, Donat; Manji, Karim; Shabani, Josephine; Shirima, Kizito; Mkopi, Namala; Mrisho, Mwifadhi; Manzi, Fatuma; Jaribu, Jennie; Kija, Edward; Assenga, Evelyne; Kisenge, Rodrick; Pembe, Andrea; Hanson, Claudia; Mbaruku, Godfrey; Masanja, Honorati; Lawn, Joy E.
EN-BIRTH Data Collector Training – Training Module material. (2018)
Day, Louise Tina; Ruysen, Harriet; Gordeev, Vladimir S.; Gore-langton, Georgia R.; Boggs, Dorothy; Cousens, Simon; Moxon, Sarah G.; Blencowe, Hannah; Baschieri, Angela; Rahman, Ahmed Ehsanur; Tahsina, Tazeen; Zaman, Sojib Bin; Hossain, Tanvir; Rahman, Qazi Sadeq-ur; Ameen, Shafiqul; Arifeen, Shams El; KC, Ashish; Shrestha, Shree Krishna; KC, Naresh P.; Singh, Dela; Jha, Anjani Kumar; Jha, Bijay; Rana, Nisha; Basnet, Omkar; Joshi, Elisha; Paudel, Asmita; Shrestha, Parashu Ram; Jha, Deepak; Bastola, Ram Chandra; Ghimire, Jagat Jeevan; Paudel, Rajendra; Salim, Nahya; Shamba, Donat; Manji, Karim; Shabani, Josephine; Shirima, Kizito; Mkopi, Namala; Mrisho, Mwifadhi; Manzi, Fatuma; Jaribu, Jennie; Kija, Edward; Assenga, Evelyne; Kisenge, Rodrick; Pembe, Andrea; Hanson, Claudia; Mbaruku, Godfrey; Masanja, Honorati; Lawn, Joy E.
scrapR. (2018)
Kucharski, Adam
obrady/Brazil_microcepahly_analysis_public. (2018)
Brady, Oliver J.
PierreMasselot/Paper--2018--Aggregated_response_in_regression. (2018)
Masselot, Pierre
DREAMS baseline study in young men aged 20-29 years in rural KwaZulu Natal, South Africa, 2006-2015. (2018)
Herbst, Kobus; Pillay, Deenan; Baisley, Kathy; Barnighausen, Till; Koole, Olivier
BlantyreTBEpi. (2018)
MacPherson, Peter; Khundi, McEwen; Nliwasa, Marriott; Choko, Augustine T.; Phiri, Vincent K.; Webb, Emily L.; Dodd, Peter J.; Cohen, Ted; Harris, Rebecca; Corbett, Elizabeth L.
ruthkeogh/landmark_CF. (2018)
Keogh, Ruth
IDEAS project - Professional advice network study in Ethiopia. (2018)
Sabot, Kate
description
Novel Wolbachia strains in Anopheles malaria vectors from Sub-Saharan Africa. (2018)
Walker, Thomas
Sensitivity analysis for missing data in cost-effectiveness analysis: Stata code. (2018)
Leurent, Baptiste; Gomes, Manuel; Faria, Rita; Morris, Stephen; Grieve, Richard; Carpenter, James R.
MI-CC. (2018)
Keogh, Ruth
Farafenni INDEPTH Core Dataset 1982-2015 (Release 2018). (2018)
Jasseh, Momodou; D'Alessandro, Umberto; Dondeh, Bai Lamin
treespace: exploration of landscapes of phylogenetic trees. (2018)
Jombart, Thibaut; Kendall, Michelle; Almagro-Garcia, Jacob; Colijn, Caroline
ELISA Plate Washer. (2018)
Roberts, Chrissy
description
Code for "The relative fitness of drug resistant Mycobacterium tuberculosis: a modelling study of household transmission in Lima, Peru". (2018)
Knight, Gwen
Comparison of different approaches for estimating age-specific alcohol-attributable mortality: The cases of France and Finland. (2018)
Trias-Llimós, Sergi; Martikainen, Pekka; Mäkelä, Pia; Janssen, Fanny
Type 2 Diabetes drug codelist. (2018)
Wilkinson, Samantha; Douglas, Ian J.; Stirnadel-Farrant, Heide; Smeeth, Liam; Tomlinson, Laurie A.
description
LSHTM Research Data Management Policy. (2018)
LSHTM Library & Archives service
Socialmixr: Social Mixing Matrices for Infectious Disease Modelling. (2018)
Funk, Sebastian
LSHTM Data Management Plan for Research Students. (2018)
LSHTM Library & Archives Service
LSHTM Data Management Plan for research projects. (2018)
LSHTM Library & Archives Service
migariane/CER_SEER_FL_RTvsCH: Cancer Survival Outcome among Stage I follicular Lymphoma Cancer Patients Treated with Monotherapy: Radiotherapy versus Systemic Treatment. (2018)
Fung Lee, Shing; Ng, Ting Ying; Wong, Frank Chi Sing; Fernandez, Miguel Angel Luque
R code and data for: "Multivariate meta-analysis for non-linear and other multi-parameter associations". (2017)
Gasparrini, Antonio; Armstrong, Ben; Kenward, Mike G.
R code and data for: "Reducing and meta-analysing estimates from distributed lag non-linear models". (2017)
Gasparrini, Antonio; Armstrong, Ben
R code and data for: "Temporal Variation in Heat–Mortality Associations: A Multicountry Study". (2017)
Gasparrini, Antonio; Guo, Yuming; Hashizume, Masahiro; Kinney, Patrick L.; Petkova, Elisaveta P.; Lavigne, Eric; Zanobetti, Antonella; Schwartz, Joel D.; Tobias, Aurelio; Leone, Michela; Tong, Shilu; Honda, Yasushi; Kim, Ho; Armstrong, Ben G.
Model code for "An explanation for the low proportion of tuberculosis that results from transmission between household and known social contacts". (2017)
Mccreesh, Nicky
description
CMATCH: Stata module to tabulate matched pairs in 1:1 case control study by exposure status. (2017)
Fernandez, Miguel Angel Luque
FPC Grader. (2017)
Roberts, Chrissy
Open Data Kit PDF Report Creator. (2017)
Roberts, Chrissy
Point-of-contact Interactive Record Linkage (PIRL). (2017)
Kabudula, Chodziwadziwa; Rentsch, Christopher
smcfcs: Multiple Imputation of Covariates by Substantive Model Compatible Fully Conditional Specification. (2017)
Bartlett, Jonathan; Keogh, Ruth
CVAUROC: Stata module to compute Cross-validated Area Under the Curve for ROC Analysis after Predictive Modelling for Binary Outcomes. (2017)
Luque, Miguel Angel; Maringe, Camille; Nelson, Paul
The development and validation of a Real Time Location System to reliably monitor everyday activities in natural contexts. (2017)
Judah, Gaby; de Witt Huberts, Jessica; Drassal, Allan; Aunger, Robert
grid_on
rbi: R Interface to LibBi. (2017)
Jacob, Pierre E.; Lee, Anthony; Murray, Lawrence; Funk, Sebastian
gasparrini/2014_gasparrini_BMCmrm_Rcodedata. (2017)
Gasparrini, Antonio; Leone, Michela
dlnm: Distributed Lag Non-Linear Models. (2017)
Gasparrini, Antonio; Armstrong, Ben; Scheipl, Fabian
R and STATA code for: "Conditional Poisson models: a flexible alternative to conditional logistic case cross-over analysis". (2017)
Armstrong, Ben G.; Gasparrini, Antonio; Tobias, Aurelio
R code and data for: "Associations of Inter- and Intraday Temperature Change With Mortality". (2017)
Vicedo-cabrera, Ana M.; Forsberg, Bertil; Tobias, Aurelio; Zanobetti, Antonella; Schwartz, Joel; Armstrong, Ben; Gasparrini, Antonio
R code for: "Distributed lag non-linear models". (2017)
Gasparrini, Antonio; Armstrong, Ben; Kenward, Mike G.
R code for: "Modeling exposure–lag–response associations with distributed lag non-linear models". (2017)
Gasparrini, Antonio
R code for: "The impact of heat waves on mortality". (2017)
Gasparrini, Antonio; Armstrong, Ben
R code, Stata code and data for: "Time series regression studies in environmental epidemiology". (2017)
Bhaskaran, Krishnan; Gasparrini, Antonio; Hajat, Shakoor; Smeeth, Liam; Armstrong, Ben
Tutorial code for "Distributed Lag Linear and Non-Linear Models
in R: The Package dlnm". (2017)
Gasparrini, Antonio
R code and data for: "A penalized framework for distributed lag non-linear models". (2017)
Gasparrini, Antonio; Scheipl, Fabian; Armstrong, Ben; Kenward, Mike
PRINCESS: Privacy-protecting Rare disease International Network Collaboration via Encryption through Software guard extensionS. (2016)
Chen, Feng; Wang, Shuang; Jiang, Xiaoqian; Ding, Sijie; Lu, Yao; Kim, Jihoon; Sahinalp, S. Cenk; Shimizu, Chisato; Burns, Jane C.; Wright, Victoria J.; Png, Eileen; Hibberd, Martin L.; Lloyd, David D.; Yang, Hai; Telenti, Amalio; Bloss, Cinnamon S.; Fox, Dov; Lauter, Kristin; Ohno-Machado, Lucila
jomo: Multilevel Joint Modelling Multiple Imputation. (2016)
Quartagno, Matteo; Carpenter, James
MESH subjects file for Eprints. (2016)
Reid, Andy
description
Treatment Contact Coverage for Probable Depressive and Probable Alcohol Use Disorders in Four Low- and Middle-Income Country Districts: The PRIME Cross-Sectional Community Surveys. Stata do file for baseline analysis. (2016)
Rathod, Sujit D.; De Silva, Mary J.; Ssebunnya, Joshua; Breuer, Erica; Murhar, Vaibhav; Luitel, Nagendra P.; Medhin, Girmay; Kigozi, Fred; Shidhaye, Rahul; Fekadu, Abebaw; Jordans, Mark; Patel, Vikram; Tomlinson, Mark; Lund, Crick
description
The Effect of Cash, Vouchers, and Food Transfers on Intimate Partner Violence: Evidence from a Randomized Experiment in Northern Ecuador. (2016)
Hidrobo, Melissa; Peterman, Amber; Heise, Lori
Autopsy Prevalence of Tuberculosis and Other Potentially Treatable Infections among Adults with Advanced HIV Enrolled in Out-Patient Care in South Africa: Lesedi Kamoso study data. (2016)
Karat, Aaron S.; Omar, Tanvier; von Gottberg, Anne; Tlali, Mpho; Chihota, Violet N.; Churchyard, Gavin J.; Fielding, Katherine L.; Johnson, Suzanne; Martinson, Neil A.; McCarthy, Kerrigan; Wolter, Nicole; Wong, Emily B.; Charalambous, Salome; Grant, Alison D.
description
Children with Moderate Acute Malnutrition with No Access to Supplementary Feeding Programmes Experience High Rates of Deterioration and No Improvement: Results from a Prospective Cohort Study in Rural Ethiopia. (2016)
James, Philip; Sadler, Kate; Wondafrash, Mekitie; Argaw, Alemayehu; Luo, Hanqi; Geleta, Benti; Kedir, Kiya; Getnet, Yilak; Belachew, Tefera; Bahwere, Paluku
Validation of the Recording of Acute Exacerbations of COPD in UK Primary Care Electronic Healthcare Records. (2016)
Chotirmall, Sanjay Haresh; Rothnie, Kieran; Müllerová, Hana; Hurst, John R.; Smeeth, Liam; Davis, Kourtney; Thomas, Sara L; Quint, Jennifer
description
RAAB - Rapid Assessment of Avoidable Blindness. (2016)
Limburg, Hans; Meester, Walter; Kuper, Hannah; Polack, Sarah
Additional file 2: of Quantification of the natural history of visceral leishmaniasis and consequences for control. (2015)
Chapman, Lloyd A C; Dyson, Louise; Courtenay, Orin; Chowdhury, Rajib; Bern, Caryn; Medley, Graham; Hollingsworth, T. Deirdre
description
National Survey of Sexual Attitudes and Lifestyles, 2010-2012. (2015)
Johnson, Anne
LSHTM APCs 2015 (Jan-June). (2015)
Lawson, Stuart; Murtagh, John
description
Replication and re-analysis of a Kenyan stepped-wedge trial – Analysis files. (2015)
Davey, Calum; Aiken, Alexander; Hayes, Richard; Hargreaves, James
Effect of paying for performance on utilisation, quality, and user costs of health services in Tanzania: a controlled before and after study. (2015)
Binyaruka, Peter; Patouillard, Edith; Powell-jackson, Timothy; Greco, Giulia; Maestad, Ottar; Borghi, Josephine
description
Data from: Transmission of multidrug-resistant and drug-susceptible tuberculosis within households: a prospective cohort study. (2015)
Grandjean, Louis; Gilman, Robert H.; Martin, Laura; Soto, Esther; Castro, Beatriz; Lopez, Sonia; Coronel, Jorge; Castillo, Edith; Alarcon, Valentina; Lopez, Virginia; San Miguel, Angela; Quispe, Neyda; Asencios, Luis; Dye, Christopher; Moore, David
EPrints Geographic Location plugin. (2015)
Jennings, Simon; McNicholl, Rory
folder_zip
Evaluation of WaterAid sanitation in Odisha, India (Household Baseline) (June 2015). (2015)
Clasen, Thomas
mvmeta: Multivariate and Univariate Meta-Analysis and Meta-Regression. (2015)
Gasparrini, Antonio
Data from: Ecological host fitting of Trypanosoma cruzi TcI in Bolivia: mosaic population structure, hybridization and a role for humans in Andean parasite dispersal. (2015)
Messenger, Louisa; Garcia, Lineth; Vanhove, Mathieu; Huaranca, Carlos; Bustamante, Marinely; Torrico, Marycruz; Torrico, Faustino; Miles, Michael; Llewellyn, Martin
PhyloTrack. (2015)
Benavente, Ernest; Coll, Francesc; Furnham, Nick; Mcnerney, Ruth; Glynn, Judith; Campino, Susana; Pain, Arnab; Mohareb, Fady R; Clark, Taane
Data from: Novel R pipeline for analyzing Biolog phenotypic microarray data. (2015)
Vehkala, Minna; Shubin, Mikhail; Connor, Thomas R; Thomson, Nick; Corander, Jukka
folder_zip
Genome-wide analysis of selection on the malaria parasite Plasmodium falciparum in West African populations of differing infection endemicity: Supplementary data. (2015)
Mobegi, Victor; Duffy, Craig; Amambua-Ngwa, Alfred; Loua, Kovana M; Laman, Eugene; Nwakanma, Davis C; MacInnis, Bronwyn; Aspeling-jones, Harvey; Murray, Lee; Clark, Taane; Kwiatkowski, Dominic P; Conway, David
grid_on
IDEAS project - Private sector health data sharing study in West Bengal. (2015)
Gautham, Meenakshi; Manish, Subharwal; Sanjay, Gupta; Spicer, Neil
IDEAS project - Qualitative data for the Data Informed Platform for Health formative study in West Bengal. (2015)
Bhattacharyya, Sanghita
TB Profiler. (2015)
Coll, Francesc; Mcnerney, Ruth; Preston, Mark D.; Guerra-assunção, José Afonso; Warry, Andrew; Hill-Cawthorne, Grant; Mallard, Kim; Nair, Mridul; Miranda, Anabela; Alves, Adriana; Perdigão, João; Viveiros, Miguel; Portugal, Isabel; Hasan, Zahra; Hasan, Rumina; Glynn, Judith; Martin, Nigel; Pain, Arnab; Clark, Taane
folder_zip
Data from: Clarifying life lost due to cold and heat: a new approach using annual time series. (2014)
Rehill, Nirandeep; Armstrong, Ben; Wilkinson, Paul
grid_on
PolyTB: A web-based resource designed to explore Mycobacterium tuberculosis complex (MTBC) genomic variation at a global scale. (2014)
Coll, Francesc; Preston, Mark; Guerra-Assunção, José Afonso; Hill-Cawthorn, Grant; Harris, David; Perdigão, João; Viveiros, Miguel; Portugal, Isabel; Drobniewski, Francis; Gagneux, Sebastien; Glynn, Judith R.; Pain, Arnab; Parkhill, Julian; McNerney, Ruth; Martin, Nigel; Clark, Taane
Vascular Function Intervention Trial in sickle cell disease (V-FIT): Trial Protocol. (2014)
Cox, Sharon; Halcox, Julian; Prentice, Andrew; Kamala, Beatrice Abella
IDEAS project - Private sector health data sharing study in Uttar Pradesh. (2014)
Gautham, Meenakshi; Subharwal, Manish; Gupta, Sanjay; Spicer, Neil; Mishra, Nirmala
description
Effectiveness of electronic reminders to improve medication adherence in tuberculosis patients: a cluster-randomised trial. (2013)
Fielding, Katherine; Lewis, James; Jiang, Shiwen
Droplet Digital PCR (ddPCR) data analysis scripts. (2012)
Roberts, Chrissy
folder_zip
Eyescores - Electronic Data Capture and photographic evidence collection platform for biological field studies. (2012)
Roberts, Chrissy; Mtuy, Tara; Derrick, Tamsyn; Burton, Matthew; Holland, Martin
In Silico Spoligotyping. (2012)
Coll, Francesc; Mallard, K; Preston, MD; Bentley, S; Parkhill, Julian; Mcnerney, Ruth; Martin, N; Clark, Taane
VCF Viewer (VARB). (2012)
Preston, Mark D.; Manske, M; Horner, N; Assefa, S; Campino, S; Auburn, S; Zongo, I; Ouedraogo, JB; Nosten, F; Anderson, T; Clark, Taane
DATACHECK: Stata module to perform data checks and produce informative output. (2011)
Bhaskaran, Krishnan
Ethnicity and Economic Activity: Longitudinal Perspectives, 1971-2006. (2010)
Grundy, Emily
Limiting Long-Term Illness: Longitudinal Perspectives, 1971-2006. (2010)
Grundy, Emily
A Strand-Specific RNA–Seq Analysis of the Transcriptome of the Typhoid Bacillus Salmonella Typhi. (2009)
Perkins, Timothy T.; Kingsley, Robert A.; Fookes, Maria C.; Gardner, Paul P.; James, Keith D.; Yu, Lu; Assefa, Samuel A.; He, Miao; Croucher, Nicholas J.; Pickard, Derek J.; Maskell, Duncan J.; Parkhill, Julian; Choudhary, Jyoti; Thomson, Nicholas R.; Dougan, Gordon
A HaemAtlas: characterizing gene expression in differentiated human blood cells. (2009)
Watkins, Nicholas A; Gusnanto, Arief; de Bono, Bernard; De, Subhajyoti; Miranda-Saavedra, Diego; Hardie, Debbie L; Angenent, Will G. J.; Attwood, Antony P; Ellis, Peter D; Erber, Wendy; Foad, Nicola S; Garner, Stephen F; Isacke, Clare M; Jolley, Jennifer; Koch, Kerstin; Macaulay, Iain C; Morley, Sarah L; Rendon, Augusto; Rice, Kate M; Taylor, Niall; Thijssen-Timmer, Daphne C; Tijssen, Marloes R; van der Schoot, C. Ellen; Wernisch, Lorenz; Winzer, Thilo; Dudbridge, Frank; Buckley, Christopher D; Langford, Cordelia F; Teichmann, Sarah; Göttgens, Berthold; Ouwehand, Willem H
DNAPlotter: circular and linear interactive genome visualization. (2009)
Carver, Tim; Thomson, Nick; Bleasby, Alan; Berriman, Matthew; Parkhill, Julian
SnoopCGH. (2009)
Almagro-Garcia, Jacob; Clark, Taane
Clinical and Health Outcomes Knowledge Base. (2007)
Lakhani, A; Olearnik, H; Eayres, D
INTCENS: Stata module to perform interval-censored survival analysis. (2005)
Griffin, James