katholt/srst2

Inouye, M; Dashnow, H; Pope, B; Wick, R and Holt, KE

(2021). katholt/srst2. [Dataset]. Github. https://github.com/katholt/srst2

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Short Read Sequence Typing for Bacterial Pathogens. This program is designed to take Illumina sequence data, a MLST database and/or a database of gene sequences (e.g. resistance genes, virulence genes, etc) and report the presence of STs and/or reference genes.

Keywords

Short Read Sequence; Bacterial pathogens

Item Type	Dataset
Resource Type	Resource Type Resource Description Software Python, R code
Capture method	Other
Date	20 June 2021
Language(s) of written materials	English
Creator(s)	Inouye, M; Dashnow, H; Pope, B; Wick, R and Holt, KE
LSHTM Faculty/Department	Faculty of Infectious and Tropical Diseases > Department of Infection Biology
Research Centre	Antimicrobial Resistance Centre (AMR)
Participating Institutions	London School of Hygiene & Tropical Medicine, London, United Kingdom
Date Deposited	03 Oct 2022 13:14
Last Modified	16 Dec 2025 10:41
Publisher	Github