Inouye, M, Dashnow, H, Pope, B, Wick, R and Holt, KE. 2021. katholt/srst2. [Online]. Github. Available from: https://github.com/katholt/srst2
Inouye, M, Dashnow, H, Pope, B, Wick, R and Holt, KE. katholt/srst2 [Internet]. Github; 2021. Available from: https://github.com/katholt/srst2
Inouye, M, Dashnow, H, Pope, B, Wick, R and Holt, KE (2021). katholt/srst2. [Data Collection]. Github. https://github.com/katholt/srst2
Description
Short Read Sequence Typing for Bacterial Pathogens. This program is designed to take Illumina sequence data, a MLST database and/or a database of gene sequences (e.g. resistance genes, virulence genes, etc) and report the presence of STs and/or reference genes.
Keywords
| Data capture method | Other |
|---|---|
| Date (Date published in a 3rd party system) | 20 June 2021 |
| Language(s) of written materials | English |
| Data Creators | Inouye, M, Dashnow, H, Pope, B, Wick, R and Holt, KE |
|---|---|
| LSHTM Faculty/Department | Faculty of Infectious and Tropical Diseases > Department of Infection Biology |
| Research Centre | Antimicrobial Resistance Centre (AMR) |
| Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom |
| Date Deposited | 03 Oct 2022 13:14 |
|---|---|
| Last Modified | 03 Oct 2022 13:14 |
| Publisher | Github |
