VCF Viewer (VARB)
Preston, MD; Manske, M; Horner, N; Assefa, S; Campino, S; Auburn, S; Zongo, I; Ouedraogo, J; Nosten, F; Anderson, T and Clark, T
(2012).
VCF Viewer (VARB).
[Dataset].
London School of Hygiene & Tropical Medicine, London, United Kingdom.
https://web.archive.org/web/20140726124623/http://pathogenseq.lshtm.ac.uk/
(2012).
VCF Viewer (VARB).
[Dataset].
London School of Hygiene & Tropical Medicine, London, United Kingdom.
https://web.archive.org/web/20140726124623/http://pathogenseq.lshtm.ac.uk/
High throughput sequencing is generating large datasets that can be used provide important insights into genomic variation and biology. There is a need to visualize single nucleotide polymorphisms, insertions and deletions, and other structural variants from new sequence file formats. We have developed VarB software that can read in multi-sample VCF files, and visualize and critically assess contents and identify informative markers to discriminate between user-defined groups.
Keywords
VarB; VCF; Single nucleotide polymorphisms| Item Type | Dataset |
|---|---|
| Resource Type |
Resource Type Resource Description Software VarB software |
| Capture method | Other |
| Date | 2012 |
| Language(s) of written materials | English |
| Creator(s) |
Preston, MD; Manske, M; Horner, N; Assefa, S; Campino, S; Auburn, S; Zongo, I; Ouedraogo, J; Nosten, F; Anderson, T and Clark, T
|
| LSHTM Faculty/Department |
Faculty of Epidemiology and Population Health > Dept of Infectious Disease Epidemiology (-2023) Faculty of Infectious and Tropical Diseases > Dept of Pathogen Molecular Biology (-2019) |
| Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom |
| Date Deposited | 09 Jan 2018 12:43 |
| Last Modified | 08 Oct 2024 10:58 |
| Publisher | London School of Hygiene & Tropical Medicine |
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