Robert, A, Funk, S, Kucharski, AJ and Jombart, T. 2021. o2geosocial: Reconstruction of Transmission Chains from Surveillance Data. [Online]. Comprehensive R Archive Network. Available from: https://cran.r-project.org/package=o2geosocial
Robert, A, Funk, S, Kucharski, AJ and Jombart, T. o2geosocial: Reconstruction of Transmission Chains from Surveillance Data [Internet]. Comprehensive R Archive Network; 2021. Available from: https://cran.r-project.org/package=o2geosocial
Robert, A, Funk, S, Kucharski, AJ and Jombart, T (2021). o2geosocial: Reconstruction of Transmission Chains from Surveillance Data. [Data Collection]. Comprehensive R Archive Network. https://cran.r-project.org/package=o2geosocial
Description
Bayesian reconstruction of who infected whom during past outbreaks using routinely-collected surveillance data. Inference of transmission trees using genotype, age specific social contacts, distance between cases and onset dates of the reported cases
Keywords
| Data capture method | Other |
|---|---|
| Date (Date published in a 3rd party system) | 11 September 2021 |
| Language(s) of written materials | English |
| Data Creators | Robert, A, Funk, S, Kucharski, AJ and Jombart, T |
|---|---|
| LSHTM Faculty/Department | Faculty of Epidemiology and Population Health > Dept of Infectious Disease Epidemiology |
| Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom |
| Date Deposited | 12 May 2023 09:19 |
|---|---|
| Last Modified | 12 May 2023 09:19 |
| Publisher | Comprehensive R Archive Network |
