o2geosocial: Reconstruction of Transmission Chains from Surveillance Data
Robert, A
; Funk, S; Kucharski, AJ and Jombart, T
(2021).
o2geosocial: Reconstruction of Transmission Chains from Surveillance Data.
[Dataset].
Comprehensive R Archive Network.
https://cran.r-project.org/package=o2geosocial
; Funk, S; Kucharski, AJ and Jombart, T
(2021).
o2geosocial: Reconstruction of Transmission Chains from Surveillance Data.
[Dataset].
Comprehensive R Archive Network.
https://cran.r-project.org/package=o2geosocial
Bayesian reconstruction of who infected whom during past outbreaks using routinely-collected surveillance data. Inference of transmission trees using genotype, age specific social contacts, distance between cases and onset dates of the reported cases
Keywords
Transmission chains| Item Type | Dataset |
|---|---|
| Resource Type |
Resource Type Resource Description Software R package |
| Capture method | Other |
| Date | 11 September 2021 |
| Language(s) of written materials | English |
| Creator(s) |
Robert, A; Funk, S; Kucharski, AJ and Jombart, T
|
| LSHTM Faculty/Department | Faculty of Epidemiology and Population Health > Dept of Infectious Disease Epidemiology (-2023) |
| Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom |
| Date Deposited | 12 May 2023 09:19 |
| Last Modified | 12 May 2023 09:19 |
| Publisher | Comprehensive R Archive Network |
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