Kleborate v2.0.0
; Lam, M and Wick, R
(2020).
Kleborate v2.0.0.
[Dataset].
Zenodo.
https://doi.org/10.5281/zenodo.4923014
Kleborate is a tool to screen genome assemblies of Klebsiella pneumoniae and the Klebsiella pneumoniae species complex (KpSC) for: MLST sequence type; species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.); ICEKp associated virulence loci: yersiniabactin (ybt), colibactin (clb), salmochelin (iro), hypermucoidy (rmpA); virulence plasmid associated loci: salmochelin (iro), aerobactin (iuc), hypermucoidy (rmpA, rmpA2); antimicrobial resistance determinants: acquired genes, SNPs, gene truncations and intrinsic β-lactamases; K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles and Kaptive. This release (v2.0.0) is the one used for the manuscript describing Kleborate: Lam et al, 2021, Nature Communications. For documentation and developments see https://github.com/katholt/Kleborate
Keywords
Klebsiella pneumoniae; Klebsiella pneumoniae species complex| Item Type | Dataset |
|---|---|
| Resource Type |
Resource Type Resource Description Software Python |
| Capture method | Other |
| Date | 9 November 2020 |
| Language(s) of written materials | English |
| Creator(s) |
Holt, KE; Lam, M and Wick, R
|
| LSHTM Faculty/Department | Faculty of Infectious and Tropical Diseases > Dept of Immunology and Infection (-2019) |
| Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom |
| Date Deposited | 07 Aug 2021 10:31 |
| Last Modified | 12 Aug 2025 12:30 |
| Publisher | Zenodo |
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