ecthomson/Contamination-Filter

Thomson, ECORCID logo (2025). ecthomson/Contamination-Filter. [Dataset]. Zenodo. https://doi.org/10.5281/zenodo.14860986
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This Bash script identifies identical viral reads across samples from the same sequencing run to detect potential cross-contamination. It processes .sam files, extracting and analyzing mapped sequences to identify commonalities that indicate contamination.

Keywords

viral reads; cross-contamination

Item Type Dataset
Resource Type
Resource Type
Resource Description
Software
Shell script
Capture method Other
Date 12 February 2025
Language(s) of written materials English
Creator(s) Thomson, ECORCID logo
LSHTM Faculty/Department Faculty of Infectious and Tropical Diseases > Dept of Clinical Research
Participating Institutions London School of Hygiene & Tropical Medicine, London, United Kingdom
Date Deposited 10 Feb 2025 12:08
Last Modified 18 Jun 2026 12:38
Publisher Zenodo

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