ecthomson/Contamination-Filter
Thomson, EC
(2025).
ecthomson/Contamination-Filter.
[Dataset].
Zenodo.
https://doi.org/10.5281/zenodo.14860986
(2025).
ecthomson/Contamination-Filter.
[Dataset].
Zenodo.
https://doi.org/10.5281/zenodo.14860986
This Bash script identifies identical viral reads across samples from the same sequencing run to detect potential cross-contamination. It processes .sam files, extracting and analyzing mapped sequences to identify commonalities that indicate contamination.
Keywords
viral reads; cross-contamination| Item Type | Dataset |
|---|---|
| Resource Type |
Resource Type Resource Description Software Shell script |
| Capture method | Other |
| Date | 12 February 2025 |
| Language(s) of written materials | English |
| Creator(s) |
Thomson, EC
|
| LSHTM Faculty/Department | Faculty of Infectious and Tropical Diseases > Dept of Clinical Research |
| Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom |
| Date Deposited | 10 Feb 2025 12:08 |
| Last Modified | 03 Apr 2025 08:39 |
| Publisher | Zenodo |
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