PANGEA-HIV/PANGEA-Sequences: v1.0.0

PANGEA-HIV Consortium. 2023. PANGEA-HIV/PANGEA-Sequences: v1.0.0. [Online]. Zenodo. Available from: https://doi.org/10.5281/zenodo.10075814

PANGEA-HIV Consortium. PANGEA-HIV/PANGEA-Sequences: v1.0.0 [Internet]. Zenodo; 2023. Available from: https://doi.org/10.5281/zenodo.10075814

PANGEA-HIV Consortium (2023). PANGEA-HIV/PANGEA-Sequences: v1.0.0. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10075814

Description

HIV consensus sequences of the PANGEA-HIV consortium. HIV sequence data were obtained from participants from multiple cohorts across Africa and generated following deep-sequencing by the PANGEA-HIV consortium. PANGEA-HIV stands for "Phylogenetics And Networks for Generalised Epidemics in Africa". The overarching goal of the PANGEA consortium is to identify individual and population level factors that drive the epidemic using HIV-1 phylogenetic data, analyse the dynamics of the epidemic, and translate these findings into information that can be used to design more efficient interventions.

Methods

Description of data capture	HIV sequence data were obtained from participants from multiple cohorts across Africa and generated following deep-sequencing by the PANGEA-HIV consortium. PANGEA-HIV stands for "Phylogenetics And Networks for Generalised Epidemics in Africa".
Data capture method	Experiment: Laboratory, Other
Date (Date published in a 3rd party system)	6 November 2023
Language(s) of written materials	English

People & Groups

Data Creators	PANGEA-HIV Consortium
Associated roles	Fraser, C (Project Leader), Abeler-Dörner, L (Other), Ayles, H (Other), Bonsall, D (Other), Bowden, R (Other), Calvez, V (Other), Essex, M (Other), Fidler, S (Other), Grabowski, K (Other), Golubchik, T (Other), Gupta, R (Other), Hayes, R (Other), Herbeck, J (Other), Kagaayi, J (Other), Kaleebu, P (Other), Lingappa, J (Other), Moyo, S (Other), Novitsky, V (Other), Ndung'u, T (Other), Pillay, D (Project Leader), Quinn, T (Other), Rambaut, A (Other), Ratmann, O (Other), Seeley, J (Other), Ssemwanga, D (Other), Tanser, F (Other), Wawer, M (Other), Cohen, M (Other), D'Oliveira, T (Other), Dennis, A (Other), Frampton, D (Other), Hoppe, A (Other), Kellam, P (Other), Kityo, C (Other), Leigh-Brown, A (Other) and Paton, N (Other)
Participating Institutions	London School of Hygiene & Tropical Medicine, London, United Kingdom