3 January 2006

Young, JPW, Crossman, LC, Johnston, AW, Thomson, NR, Ghazoui, ZF, Hull, KH, Wexler, M, Curson, AR, Todd, JD, Poole, PS, Mauchline, TH, East, AK, Quail, MA, Churcher, C, Arrowsmith, C, Cherevach, I, Chillingworth, T, Clarke, K, Cronin, A, Davis, P, Fraser, A, Hance, Z, Hauser, H, Jagels, K, Moule, S, Mungall, K, Norbertczak, H, Rabbinowitsch, E, Sanders, M, Simmonds, M, Whitehead, S and Parkhill, J (2006). The genome of Rhizobium leguminosarum has recognizable core and accessory components. [Data Collection]. Genome Biology. https://doi.org/10.1186/gb-2006-7-4-r34

6 August 2009

Smargiasso, N, Gabelica, V, Damblon, C, Rosu, F, De Pauw, E, Teulade-Fichou, M, Rowe, A and Claessens, A (2009). Putative DNA G-quadruplex formation within the promoters of Plasmodium falciparum var genes: Supplementary data. [Data Collection]. BMC Genomics. https://doi.org/10.1186/1471-2164-10-362

21 December 2009

Currier, R, Harrison, RA, Rowley, PD, Laing, GD and Wagstaff, SC (2009). Intra-specific variation in venom of the African Puff Adder (Bitis arietans): Differential expression and activity of snake venom metalloproteinases (SVMPs). [Data Collection]. Elsevier.

2011

Spear, AM (2011). Identification and characterisation of bacterial TIR domains, with particular focus on yersinia pestis: Study Data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000080.

30 June 2011

Claessens, A, Ghumra, A, Gupta, AP, Mok, S, Bozdech, Z and Rowe, JA (2011). Design of a variant surface antigen-supplemented microarray chip for whole transcriptome analysis of multiple Plasmodium falciparum cytoadherent strains, and identification of strain-transcendent rif and stevor genes: Additional files. [Data Collection]. Malaria Journal. http://doi.org/10.1186/1475-2875-10-180

21 February 2012

Sheehy, SH, Duncan, CJA, Elias, SC, Biswas, S, Collins, KA, O'hara, G, Halstead, FD, Ewer, KJ, Mahungu, T, Spencer, AJ, Miura, K, Poulton, ID, Dicks, MDJ, Edwards, NJ, Berrie, E, Moyle, S, Colloca, S, Cortese, R, Gantlett, K, Long, CA, Lawrie, AM, Gilbert, SC, Doherty, T, Nicosia, A, Hill, AVS and Draper, SJ (2012). Phase Ia clinical evaluation of the safety and immunogenicity of the Plasmodium falciparum blood-stage antigen AMA1 in ChAd63 and MVA vaccine vectors. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.24.

7 August 2012

Currier, R, Calvete, JJ, Sanz, L, Harrison, RA, Rowley, PD and Wagstaff, SC (2012). Unusual stability of messenger RNA in snake venom reveals gene expression dynamics of venom replenishment. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0041888

2014

Lindgreen, S, Umu, SU, Lai, AS, Eldai, H, Liu, W, McGimpsey, S, Wheeler, NE, Biggs, PJ, Thomson, NR, Barquist, L, Poole, AM and Gardner, PP (2014). Robust Identification of Noncoding RNA from Transcriptomes Requires Phylogenetically-Informed Sampling. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pcbi.1003907

18 December 2014

Glubb, DM, Maranian, MJ, Michailidou, K, Pooley, KA, Meyer, KB, Kar, S, Carlebur, S, O’Reilly, M, Betts, JA, Hillman, KM, Kaufmann, S, Beesley, J, Canisius, S, Hopper, JL, Southey, MC, Tsimiklis, H, Apicella, C, Schmidt, MK, Broeks, A, Hogervorst, FB, van der Schoot, CE, Muir, K, Lophatananon, A, Stewart-Brown, S, Siriwanarangsan, P, Fasching, PA, Ruebner, M, Ekici, AB, Beckmann, MW, Peto, J, Silva, I, Fletcher, O, Johnson, N, Pharoah, PD, Bolla, MK, Wang, Q, Dennis, J, Sawyer, EJ, Tomlinson, I, Kerin, MJ, Miller, N, Burwinkel, B, Marme, F, Yang, R, Surowy, H, Guénel, P, Truong, T, Menegaux, F, Sanchez, M, Bojesen, SE, Nordestgaard, BG, Nielsen, SF, Flyger, H, González-Neira, A, Benitez, J, Zamora, MP, Arias Perez, JI, Anton-Culver, H, Neuhausen, SL, Brenner, H, Dieffenbach, AK, Arndt, V, Stegmaier, C, Meindl, A, Schmutzler, RK, Brauch, H, Ko, Y, Brüning, T, Nevanlinna, H, Muranen, TA, Aittomäki, K, Blomqvist, C, Matsuo, K, Ito, H, Iwata, H, Tanaka, H, Dörk, T, Bogdanova, NV, Helbig, S, Lindblom, A, Margolin, S, Mannermaa, A, Kataja, V, Kosma, V, Hartikainen, JM, Wu, AH, Tseng, C, Van Den Berg, D, Stram, DO, Lambrechts, D, Zhao, H, Weltens, C, van Limbergen, E, Chang-Claude, J, Flesch-Janys, D, Rudolph, A, Seibold, P, Radice, P, Peterlongo, P, Barile, M, Capra, F, Couch, FJ, Olson, JE, Hallberg, E, Vachon, C, Giles, GG, Milne, RL, McLean, C, Haiman, CA, Henderson, BE, Schumacher, F, Le Marchand, L, Simard, J, Goldberg, MS, Labrèche, F, Dumont, M, Teo, SH, Yip, CH, See, M, Cornes, B, Cheng, C, Ikram, MK, Kristensen, V, Zheng, W, Halverson, SL, Shrubsole, M, Long, J, Winqvist, R, Pylkäs, K, Jukkola-Vuorinen, A, Kauppila, S, Andrulis, IL, Knight, JA, Glendon, G, Tchatchou, S, Devilee, P, Tollenaar, RA, Seynaeve, C, Van Asperen, CJ, García-Closas, M, Figueroa, J, Chanock, SJ, Lissowska, J, Czene, K, Klevebring, D, Darabi, H, Eriksson, M, Hooning, MJ, Hollestelle, A, Martens, JW, Collée, JM, Hall, P, Li, J, Humphreys, K, Shu, X, Lu, W, Gao, Y, Cai, H, Cox, A, Cross, SS, Reed, MW, Blot, W, Signorello, LB, Cai, Q, Shah, M, Ghoussaini, M, Kang, D, Choi, J, Park, SK, Noh, D, Hartman, M, Miao, H, Lim, WY, Tang, A, Hamann, U, Torres, D, Jakubowska, A, Lubinski, J, Jaworska, K, Durda, K, Sangrajrang, S, Gaborieau, V, Brennan, P, McKay, J, Olswold, C, Slager, S, Toland, AE, Yannoukakos, D, Shen, C, Wu, P, Yu, J, Hou, M, Swerdlow, A, Ashworth, A, Orr, N, Jones, M, Pita, G, Alonso, MR, Álvarez, N, Herrero, D, Tessier, DC, Vincent, D, Bacot, F, Luccarini, C, Baynes, C, Ahmed, S, Healey, CS, Brown, MA, Ponder, BA, Chenevix-Trench, G, Thompson, DJ, Edwards, SL, Easton, DF, Dunning, AM and French, JD (2014). Fine-Scale Mapping of the 5q11.2 Breast Cancer Locus Reveals at Least Three Independent Risk Variants Regulating MAP3K1: Supplemental Data. [Data Collection]. Elsevier. http://doi.org/10.1016/j.ajhg.2014.11.009.

Claessens, A, Hamilton, WL, Kekre, M, Otto, TD, Faizullabhoy, A, Rayner, JC and Kwiatkowski, D (2014). Generation of Antigenic Diversity in Plasmodium falciparum by Structured Rearrangement of Var Genes During Mitosis. [Data Collection]. PLOS Genetics. https://doi.org/10.1371/journal.pmed.1001893p://dx.doi.org/10.1371/journal.pmed.1001893

2015

Reuter, S, Török, ME, Holden, MT, Reynolds, R, Raven, KE, Blane, B, Donker, T, Bentley, SD, Aanensen, DM, Grundmann, H, Feil, EJ, Spratt, BG, Parkhill, J and Peacock, S (2015). Staphylococcus Aureus BSAC study data. [Data Collection]. European Nucleotide Archive. http://www.ebi.ac.uk/ena/data/view/ERP001012

1 January 2016

Coker, OO, Chaiprasert, A, Ngamphiw, C, Tongsima, S, Regmi, SM, Clark, T, Ong, RTH, Teo, Y, Prammananan, T and Palittapongarnpim, P (2016). Mycobacterium tuberculosis Nonthaburi genotype raw reads. [Data Collection]. National Center for Biotechnology Information. https://www.ncbi.nlm.nih.gov/sra/SRX1094545

12 January 2016

Brodrick, HJ, Raven, KE, Harrison, EM, Blane, B, Reuter, S, Török, ME, Parkhill, J and Peacock, S (2016). Whole-genome sequencing reveals transmission of vancomycin-resistant Enterococcus faecium in a healthcare network. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.3641945_D1.v1

4 February 2016

Busana, M, De Stavola, B, Sovio, U, Li, J, Moss, S, Humphreys, K and dos Santos Silva, I (2016). Assessing within-woman changes in mammographic density: a comparison of fully versus semi-automated area-based approaches. [Data Collection]. Cancer Causes and Control. https://doi.org/10.1007/s10552-016-0722-9

1 March 2016

Tsuboi, T, Grigg, M, Barber, BE, Marfurt, J, Imwong, M, William, T, Bird, E, Piera, KA, Aziz, A, Boonyuen, U, Drakeley, C, Cox, J, White, NJ, Cheng, Q, Yeo, TW, Auburn, S and Anstey, NM (2016). P. knowlesi DHFR sequence data. [Data Collection]. PLoS One. https://doi.org/10.1371/journal.pone.0149519.s001

18 May 2016

Tientcheu, L, Haks, MC, Agbla, S, Sutherland, J, Adetifa, I, Donkor, S, Quinten, E, Daramy, M, Antonio, M, Kampmann, B, Ottenhoff, THM, Dockrell, H and Ota, MO (2016). Host Immune Responses Differ between M. africanum- and M. tuberculosis-Infected Patients following Standard Anti-tuberculosis Treatment. [Data Collection]. PLoS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0004701

24 May 2016

Moradigaravand, D, Martin, V, Peacock, SJ and Parkhill, J (2016). Files for "Evolution and epidemiology of multidrug resistant Klebsiella pneumoniae in the UK and Ireland". [Data Collection]. Mendeley Data. https://doi.org/10.17632/xfw8n3wzs5.1

5 July 2016

Ansari, HR, Templeton, TJ, Subudhi, AK, Ramaprasad, A, Tang, J, Lu, F, Naeem, R, Hashish, Y, Oguike, MC, Benavente, ED, Clark, TG, Sutherland, CJ, Barnwell, JW, Culleton, R, Cao, J and Pain, A (2016). Genome-scale comparison of expanded gene families in Plasmodium ovale wallikeri and Plasmodium ovale curtisi with Plasmodium malariae and with other Plasmodium species. [Data Collection]. International Journal for Parasitology. https://doi.org/10.1016/j.ijpara.2016.05.009.

7 July 2016

Moore, CE, Elwin, K, Phot, N, Seng, C, Mao, S, Suy, K, Kumar, V, Nader, J, Bousfield, R, Perera, S, Bailey, JW, Beeching, NJ, Day, NPJ, Parry, CM and Chalmers, RM (2016). Molecular Characterization of Cryptosporidium Species and Giardia duodenalis from Symptomatic Cambodian Children. [Data Collection]. PLoS neglected tropical diseases. http://dx.doi.org/10.1371/journal.pntd.0004822.s002

August 2016

Migchelsen, S (2016). Dataset for: Defining seropositivity thresholds for use in trachoma elimination studies. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.111.

16 November 2016

N'guessan, R, Odjo, A, Ngufor, C, Malone, D and Rowland, M (2016). A Chlorfenapyr Mixture Net Interceptor® G2 Shows High Efficacy and Wash Durability against Resistant Mosquitoes in West Africa. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0165925.

26 December 2016

Gundogdu, O, Da Silva, DT, Mohammad, B, Elmi, A, Wren, BW, van Vliet, AHM and Dorrell, N (2016). The Campylobacter jejuni Oxidative Stress Regulator RrpB Is Associated with a Genomic Hypervariable Region and Altered Oxidative Stress Resistance. [Data Collection]. Frontiers in Microbiology. http://dx.doi.org/10.3389/fmicb.2016.02117

24 January 2017

Runcharoen, C, Moradigaravand, D, Blane, B, Paksanont, S, Thammachote, J, Anun, S, Parkhill, J, Chantratita, N and Peacock, SJ (2017). Whole genome sequencing reveals high-resolution epidemiological links between clinical and environmental Klebsiella pneumoniae. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.3673891

31 January 2017

Lazzarino, AI and Mindell, JS (2017). Measuring high-sensitivity cardiac troponin T blood concentration in population surveys. [Data Collection]. Figshare. http://dx.doi.org/10.1371/journal.pone.0171242.s001

8 February 2017

Andreu, N, Phelan, J, de Sessions, PF, Cliff, JM, Clark, T and Hibberd, M (2017). Primary macrophages and J774 cells respond differently to infection with Mycobacterium tuberculosis. [Data Collection]. Gene Expression Omnibus. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE88801

1 March 2017

Oswald, W and Witek-McManus, S (2017). TUMIKIA Project Laboratory Kato-Katz Forms. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001312.

6 March 2017

Pickering, S, Hue, S, Kim, E, Reddy, S, Wolinsky, SM and Neil, SJD (2017). Preservation of Tetherin and CD4 Counter-Activities in Circulating Vpu Alleles despite Extensive Sequence Variation within HIV-1 Infected Individuals. [Data Collection]. Figshare. https://doi.org/10.1371/journal.ppat.1003895

25 May 2017

Senior, M, Russell, M and NatCen Social Research (2017). National Survey of Sexual Attitudes and Lifestyles, 2010-2012: Biological Data: Secure Access. [Data Collection]. UK Data Service. http://doi.org/10.5255/UKDA-SN-8179-1

22 December 2017

Hensman Moss, DJ, Robertson, N, Farmer, R, Scahill, RI, Haider, S, Tessari, MA, Flynn, G, Fischer, DF, Wild, EJ, Macdonald, D and Tabrizi, SJ (2017). Quantification of huntingtin protein species in Huntington’s disease patient leukocytes using optimised electrochemiluminescence immunoassays. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0189891

5 February 2018

Butcher, R (2018). Data for: "Clinical signs of trachoma are prevalent among Solomon Islanders who have no persistent markers of prior infection with Chlamydia trachomatis". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000795.

8 April 2018

Holt, KE and Wyres, K (2018). Klebsiella ecology and genome plasticity compared to E. coli and Gram negative ESKAPE pathogens. [Data Collection]. University of Melbourne, Australia. https://doi.org/10.4225/49/5ac3670f83717

27 April 2018

Tarr, SJ and Conway, DJ (2018). Diversity in gene expression profiles captured through highly resolved whole-transcriptome profiling of clinical and laboratory-adapted malaria parasite isolates. [Data Collection]. NCBI Gene Expression Omnibus. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE113718

2 August 2018

Palittapongarnpim, P, Ajawatanawong, P, Viratyosin, W, Smittipat, N, Disratthakit, A, Mahasirimongkol, S, Yanai, H, Yamada, N, Nedsuwan, S, Imasanguan, W, Kantipong, P, Chaiyasirinroje, B, Wongyai, J, Toyo-oka, L, Phelan, J, Parkhill, J, Clark, TG, Hibberd, ML, Ruengchai, W, Palittapongarnpim, P, Juthayothin, T, Tongsima, S and Tokunaga, K (2018). Evidence for Host-Bacterial Co-evolution via Genome Sequence Analysis of 480 Thai Mycobacterium tuberculosis Lineage 1 Isolates. [Data Collection]. Scientific Reports. https://doi.org/10.1038/s41598-018-29986-3

28 August 2018

London School of Hygiene & Tropical Medicine (2018). Plasmodium knowlesi SWGA in clinical isolates. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/data/view/PRJEB28192

1 September 2018

Gonçalves, BP, Kapulu, MC, Sawa, P, Guelbéogo, WM, Tiono, AB, Grignard, L, Stone, WJR, Hellewell, J, Lanke, K, Bastiaens, GJH, Bradley, J, Nébié, I, Ngoi, JM, Oriango, R, Mkabili, D, Nyaurah, M, Midega, J, Wirth, DF, Marsh, K, Churcher, TS, Bejon, P, Sirima, SB, Drakeley, C and Bousema, T (2018). Data from: Examining the human infectious reservoir for Plasmodium falciparum malaria in areas of differing transmission intensity. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.c3n63

12 October 2018

Scriba, TJ, Kimuda, SG, Biraro, IA, Bagaya, BS, Raynes, JG and Cose, S (2018). S1 Data File for: "Characterising antibody avidity in individuals of varied Mycobacterium tuberculosis infection status using surface plasmon resonance". [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0205102.s007

22 January 2019

Dallaku, K, Mansmann, U, Shakur-Still, H, Roberts, I, Delius, MV, Siegmund, B, Gliozheni, O, Tasha, I and Cenameri, S (2019). ETAPLAT dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000970.

12 August 2019

Kumar, N, Browne, HP, Viciani, E, Forster, SC, Clare, S, Harcourt, K, Stares, MD, Dougan, G, Fairley, DJ, Roberts, P, Pirmohamed, M, Clokie, MRJ, Jensen, MBF, Hargreaves, KR, Ip, M, Wieler, LH, Seyboldt, C, Norén, T, Riley, TV, Kuijper, EJ, Wren, BW and Lawley, TD (2019). Adaptation of host transmission cycle during Clostridium difficile speciation. [Data Collection]. Nature Genetics. https://doi.org/10.1038/s41588-019-0478-8

23 September 2019

London School of Hygiene & Tropical Medicine (2019). Comparing antimicrobial resistance prediction pipelines from bacterial whole genome sequencing data: An inter-laboratory study. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/data/view/PRJEB34513

22 October 2019

Marlais, T (2019). Diagnostics development for the neglected parasitic diseases strongyloidiasis and visceral leishmaniasis. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/PUBS.04654991

18 December 2019

Derrick, T (2019). Longitudinal gene expression dataset [The immuno-pathogenesis of progressive scarring trachoma: results of a four-year longitudinal study in Tanzanian children]. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.11401158.v1

16 January 2020

Wyres, KL, Nguyen, TNT, Lam, MMC, Judd, LM, van Vinh Chau, N, Dance, DAB, Ip, M, Karkey, A, Ling, CL, Miliya, T, Newton, PN, Lan, NPH, Sengduangphachanh, A, Turner, P, Veeraraghavan, B, Vinh, PV, Vongsouvath, M, Thomson, NR, Baker, S and Holt, KE (2020). Data for, "Genomic surveillance for hypervirulence and multi-drug resistance in invasive Klebsiella pneumoniae from south and southeast Asia.". [Data Collection]. Monash University. https://doi.org/10.26180/5c67982956721

21 January 2020

Sutherland, C and Henrici, R (2020). The Plasmodium falciparum artemisinin susceptibility-associated AP-2 adaptin mu subunit is clathrin-independent and essential for schizont-maturation v2.0. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001533.

15 June 2020

Tola, M, Ajibola, O, Idowu, ET, Omidiji, O, Awolola, ST and Amambua-Ngwa, A (2020). Additional file 2 of Molecular detection of drug resistant polymorphisms in Plasmodium falciparum isolates from Southwest, Nigeria. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.13152246.v1

15 January 2021

Scriba, TJ, Fiore-Gartland, A, Penn-Nicholson, A, Mulenga, H, Kimbung Mbandi, S, Borate, B, Mendelsohn, SC, Hadley, K, Hikuam, C, Kaskar, M, Musvosvi, M, Bilek, N, Self, S, Sumner, T, White, RG, Erasmus, M, Jaxa, L, Raphela, R, Innes, C, Brumskine, W, Hiemstra, A, Malherbe, ST, Hassan-Moosa, R, Tameris, M, Walzl, G, Naidoo, K, Churchyard, G and Hatherill, M (2021). RISK11 signature scores for the biomarker-guided tuberculosis preventive therapy (CORTIS) randomised controlled trial. [Data Collection]. University of Cape Town. https://doi.org/10.25375/uct.13573337.v1

2 February 2021

Cortes, T (2021). E-MTAB-8835 - Ribosome profiling of Mycobacterium tuberculosis under nutrient starvation. [Data Collection]. ArrayExpress. https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-8835/

7 April 2021

Jeffries, CL, Cansado-Utrilla, C, Beavogui, AH, Stica, C, Lama, EK, Kristan, M, Irish, SR and Walker, T (2021). Table S2. from Evidence for natural hybridization and novel Wolbachia strain superinfections in the Anopheles gambiae complex from Guinea. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14316674.v1

4 May 2021

London School of Hygiene & Tropical Medicine (2021). Sequencing of M/XDR isoaltes from Pakistan. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/browser/view/PRJEB43284