3 January 2006

Young, JPW, Crossman, LC, Johnston, AW, Thomson, N, Ghazoui, ZF, Hull, KH, Wexler, M, Curson, AR, Todd, JD, Poole, PS, Mauchline, TH, East, AK, Quail, MA, Churcher, C, Arrowsmith, C, Cherevach, I, Chillingworth, T, Clarke, K, Cronin, A, Davis, P, Fraser, A, Hance, Z, Hauser, H, Jagels, K, Moule, S, Mungall, K, Norbertczak, H, Rabbinowitsch, E, Sanders, M, Simmonds, M, Whitehead, S and Parkhill, J (2006). The genome of Rhizobium leguminosarum has recognizable core and accessory components. [Data Collection]. Genome Biology. https://doi.org/10.1186/gb-2006-7-4-r34

6 August 2009

Smargiasso, N, Gabelica, V, Damblon, C, Rosu, F, De Pauw, E, Teulade-Fichou, M, Rowe, A and Claessens, A (2009). Putative DNA G-quadruplex formation within the promoters of Plasmodium falciparum var genes: Supplementary data. [Data Collection]. BMC Genomics. https://doi.org/10.1186/1471-2164-10-362

2011

Spear, AM (2011). Identification and characterisation of bacterial TIR domains, with particular focus on yersinia pestis: Study Data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000080.

30 June 2011

Claessens, A, Ghumra, A, Gupta, AP, Mok, S, Bozdech, Z and Rowe, JA (2011). Design of a variant surface antigen-supplemented microarray chip for whole transcriptome analysis of multiple Plasmodium falciparum cytoadherent strains, and identification of strain-transcendent rif and stevor genes: Additional files. [Data Collection]. Malaria Journal. http://doi.org/10.1186/1475-2875-10-180

21 February 2012

Sheehy, SH, Duncan, CJA, Elias, SC, Biswas, S, Collins, KA, O'hara, G, Halstead, FD, Ewer, KJ, Mahungu, T, Spencer, AJ, Miura, K, Poulton, ID, Dicks, MDJ, Edwards, NJ, Berrie, E, Moyle, S, Colloca, S, Cortese, R, Gantlett, K, Long, CA, Lawrie, AM, Gilbert, SC, Doherty, T, Nicosia, A, Hill, AVS and Draper, SJ (2012). Phase Ia clinical evaluation of the safety and immunogenicity of the Plasmodium falciparum blood-stage antigen AMA1 in ChAd63 and MVA vaccine vectors. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.24.

7 August 2012

Currier, R, Calvete, JJ, Sanz, L, Harrison, RA, Rowley, PD and Wagstaff, SC (2012). Unusual stability of messenger RNA in snake venom reveals gene expression dynamics of venom replenishment. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0041888

2014

Lindgreen, S, Umu, SU, Lai, AS, Eldai, H, Liu, W, McGimpsey, S, Wheeler, NE, Biggs, PJ, Thomson, NR, Barquist, L, Poole, AM and Gardner, PP (2014). Robust Identification of Noncoding RNA from Transcriptomes Requires Phylogenetically-Informed Sampling. [Data Collection]. PLOS Computational Biology. https://doi.org/10.1371/journal.pcbi.1003907

18 December 2014

Glubb, DM, Maranian, MJ, Michailidou, K, Pooley, KA, Meyer, KB, Kar, S, Carlebur, S, O’Reilly, M, Betts, JA, Hillman, KM, Kaufmann, S, Beesley, J, Canisius, S, Hopper, JL, Southey, MC, Tsimiklis, H, Apicella, C, Schmidt, MK, Broeks, A, Hogervorst, FB, van der Schoot, CE, Muir, K, Lophatananon, A, Stewart-Brown, S, Siriwanarangsan, P, Fasching, PA, Ruebner, M, Ekici, AB, Beckmann, MW, Peto, J, Silva, I, Fletcher, O, Johnson, N, Pharoah, PD, Bolla, MK, Wang, Q, Dennis, J, Sawyer, EJ, Tomlinson, I, Kerin, MJ, Miller, N, Burwinkel, B, Marme, F, Yang, R, Surowy, H, Guénel, P, Truong, T, Menegaux, F, Sanchez, M, Bojesen, SE, Nordestgaard, BG, Nielsen, SF, Flyger, H, González-Neira, A, Benitez, J, Zamora, MP, Arias Perez, JI, Anton-Culver, H, Neuhausen, SL, Brenner, H, Dieffenbach, AK, Arndt, V, Stegmaier, C, Meindl, A, Schmutzler, RK, Brauch, H, Ko, Y, Brüning, T, Nevanlinna, H, Muranen, TA, Aittomäki, K, Blomqvist, C, Matsuo, K, Ito, H, Iwata, H, Tanaka, H, Dörk, T, Bogdanova, NV, Helbig, S, Lindblom, A, Margolin, S, Mannermaa, A, Kataja, V, Kosma, V, Hartikainen, JM, Wu, AH, Tseng, C, Van Den Berg, D, Stram, DO, Lambrechts, D, Zhao, H, Weltens, C, van Limbergen, E, Chang-Claude, J, Flesch-Janys, D, Rudolph, A, Seibold, P, Radice, P, Peterlongo, P, Barile, M, Capra, F, Couch, FJ, Olson, JE, Hallberg, E, Vachon, C, Giles, GG, Milne, RL, McLean, C, Haiman, CA, Henderson, BE, Schumacher, F, Le Marchand, L, Simard, J, Goldberg, MS, Labrèche, F, Dumont, M, Teo, SH, Yip, CH, See, M, Cornes, B, Cheng, C, Ikram, MK, Kristensen, V, Zheng, W, Halverson, SL, Shrubsole, M, Long, J, Winqvist, R, Pylkäs, K, Jukkola-Vuorinen, A, Kauppila, S, Andrulis, IL, Knight, JA, Glendon, G, Tchatchou, S, Devilee, P, Tollenaar, RA, Seynaeve, C, Van Asperen, CJ, García-Closas, M, Figueroa, J, Chanock, SJ, Lissowska, J, Czene, K, Klevebring, D, Darabi, H, Eriksson, M, Hooning, MJ, Hollestelle, A, Martens, JW, Collée, JM, Hall, P, Li, J, Humphreys, K, Shu, X, Lu, W, Gao, Y, Cai, H, Cox, A, Cross, SS, Reed, MW, Blot, W, Signorello, LB, Cai, Q, Shah, M, Ghoussaini, M, Kang, D, Choi, J, Park, SK, Noh, D, Hartman, M, Miao, H, Lim, WY, Tang, A, Hamann, U, Torres, D, Jakubowska, A, Lubinski, J, Jaworska, K, Durda, K, Sangrajrang, S, Gaborieau, V, Brennan, P, McKay, J, Olswold, C, Slager, S, Toland, AE, Yannoukakos, D, Shen, C, Wu, P, Yu, J, Hou, M, Swerdlow, A, Ashworth, A, Orr, N, Jones, M, Pita, G, Alonso, MR, Álvarez, N, Herrero, D, Tessier, DC, Vincent, D, Bacot, F, Luccarini, C, Baynes, C, Ahmed, S, Healey, CS, Brown, MA, Ponder, BA, Chenevix-Trench, G, Thompson, DJ, Edwards, SL, Easton, DF, Dunning, AM and French, JD (2014). Fine-Scale Mapping of the 5q11.2 Breast Cancer Locus Reveals at Least Three Independent Risk Variants Regulating MAP3K1: Supplemental Data. [Data Collection]. Elsevier. http://doi.org/10.1016/j.ajhg.2014.11.009.

Claessens, A, Hamilton, WL, Kekre, M, Otto, TD, Faizullabhoy, A, Rayner, JC and Kwiatkowski, D (2014). Generation of Antigenic Diversity in Plasmodium falciparum by Structured Rearrangement of Var Genes During Mitosis. [Data Collection]. PLOS Genetics. https://doi.org/10.1371/journal.pmed.1001893p://dx.doi.org/10.1371/journal.pmed.1001893

2015

Reuter, S, Török, ME, Holden, MT, Reynolds, R, Raven, KE, Blane, B, Donker, T, Bentley, SD, Aanensen, DM, Grundmann, H, Feil, EJ, Spratt, BG, Parkhill, J and Peacock, S (2015). Staphylococcus Aureus BSAC study data. [Data Collection]. European Nucleotide Archive. http://www.ebi.ac.uk/ena/data/view/ERP001012

1 January 2016

Coker, OO, Chaiprasert, A, Ngamphiw, C, Tongsima, S, Regmi, SM, Clark, T, Ong, RTH, Teo, Y, Prammananan, T and Palittapongarnpim, P (2016). Mycobacterium tuberculosis Nonthaburi genotype raw reads. [Data Collection]. National Center for Biotechnology Information. https://www.ncbi.nlm.nih.gov/sra/SRX1094545

12 January 2016

Brodrick, HJ, Raven, KE, Harrison, EM, Blane, B, Reuter, S, Török, ME, Parkhill, J and Peacock, S (2016). Whole-genome sequencing reveals transmission of vancomycin-resistant Enterococcus faecium in a healthcare network. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.3641945_D1.v1

4 February 2016

Busana, M, De Stavola, B, Sovio, U, Li, J, Moss, S, Humphreys, K and dos Santos Silva, I (2016). Assessing within-woman changes in mammographic density: a comparison of fully versus semi-automated area-based approaches. [Data Collection]. Cancer Causes and Control. https://doi.org/10.1007/s10552-016-0722-9

1 March 2016

Tsuboi, T, Grigg, M, Barber, BE, Marfurt, J, Imwong, M, William, T, Bird, E, Piera, KA, Aziz, A, Boonyuen, U, Drakeley, C, Cox, J, White, NJ, Cheng, Q, Yeo, TW, Auburn, S and Anstey, NM (2016). P. knowlesi DHFR sequence data. [Data Collection]. PLoS One. https://doi.org/10.1371/journal.pone.0149519.s001

18 May 2016

Tientcheu, L, Haks, MC, Agbla, S, Sutherland, J, Adetifa, I, Donkor, S, Quinten, E, Daramy, M, Antonio, M, Kampmann, B, Ottenhoff, THM, Dockrell, H and Ota, MO (2016). Host Immune Responses Differ between M. africanum- and M. tuberculosis-Infected Patients following Standard Anti-tuberculosis Treatment. [Data Collection]. PLoS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0004701.s005

24 May 2016

Moradigaravand, D, Martin, V, Peacock, SJ and Parkhill, J (2016). Files for "Evolution and epidemiology of multidrug resistant Klebsiella pneumoniae in the UK and Ireland". [Data Collection]. Mendeley Data. https://doi.org/10.17632/xfw8n3wzs5.1

5 July 2016

Ansari, HR, Templeton, TJ, Subudhi, AK, Ramaprasad, A, Tang, J, Lu, F, Naeem, R, Hashish, Y, Oguike, MC, Benavente, ED, Clark, TG, Sutherland, CJ, Barnwell, JW, Culleton, R, Cao, J and Pain, A (2016). Genome-scale comparison of expanded gene families in Plasmodium ovale wallikeri and Plasmodium ovale curtisi with Plasmodium malariae and with other Plasmodium species. [Data Collection]. International Journal for Parasitology. https://doi.org/10.1016/j.ijpara.2016.05.009.

7 July 2016

Moore, CE, Elwin, K, Phot, N, Seng, C, Mao, S, Suy, K, Kumar, V, Nader, J, Bousfield, R, Perera, S, Bailey, JW, Beeching, NJ, Day, NPJ, Parry, CM and Chalmers, RM (2016). Molecular Characterization of Cryptosporidium Species and Giardia duodenalis from Symptomatic Cambodian Children. [Data Collection]. PLoS neglected tropical diseases. http://dx.doi.org/10.1371/journal.pntd.0004822.s002

August 2016

Migchelsen, S (2016). Dataset for: Defining seropositivity thresholds for use in trachoma elimination studies. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.111.

16 November 2016

N'guessan, R, Odjo, A, Ngufor, C, Malone, D and Rowland, M (2016). Experimental hut data. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0165925.s001

26 December 2016

Gundogdu, O, Da Silva, DT, Mohammad, B, Elmi, A, Wren, BW, van Vliet, AHM and Dorrell, N (2016). The Campylobacter jejuni Oxidative Stress Regulator RrpB Is Associated with a Genomic Hypervariable Region and Altered Oxidative Stress Resistance. [Data Collection]. Frontiers in Microbiology. http://dx.doi.org/10.3389/fmicb.2016.02117

24 January 2017

Runcharoen, C, Moradigaravand, D, Blane, B, Paksanont, S, Thammachote, J, Anun, S, Parkhill, J, Chantratita, N and Peacock, SJ (2017). Whole genome sequencing reveals high-resolution epidemiological links between clinical and environmental Klebsiella pneumoniae. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.3673891

31 January 2017

Lazzarino, AI and Mindell, JS (2017). Measuring high-sensitivity cardiac troponin T blood concentration in population surveys. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0171242.s001

8 February 2017

Andreu, N, Phelan, J, de Sessions, PF, Cliff, JM, Clark, T and Hibberd, M (2017). Primary macrophages and J774 cells respond differently to infection with Mycobacterium tuberculosis. [Data Collection]. Gene Expression Omnibus. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE88801

1 March 2017

Oswald, W and Witek-McManus, S (2017). TUMIKIA Project Laboratory Kato-Katz Forms. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001312.

6 March 2017

Pickering, S, Hue, S, Kim, E, Reddy, S, Wolinsky, SM and Neil, SJD (2017). Preservation of Tetherin and CD4 Counter-Activities in Circulating Vpu Alleles despite Extensive Sequence Variation within HIV-1 Infected Individuals. [Data Collection]. Figshare. https://doi.org/10.1371/journal.ppat.1003895

22 December 2017

Hensman Moss, DJ, Robertson, N, Farmer, R, Scahill, RI, Haider, S, Tessari, MA, Flynn, G, Fischer, DF, Wild, EJ, Macdonald, D and Tabrizi, SJ (2017). Quantification of huntingtin protein species in Huntington’s disease patient leukocytes using optimised electrochemiluminescence immunoassays. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0189891

5 February 2018

Butcher, R (2018). Data for: "Clinical signs of trachoma are prevalent among Solomon Islanders who have no persistent markers of prior infection with Chlamydia trachomatis". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000795.

8 April 2018

Holt, KE and Wyres, K (2018). Klebsiella ecology and genome plasticity compared to E. coli and Gram negative ESKAPE pathogens. [Data Collection]. University of Melbourne, Australia. https://doi.org/10.4225/49/5ac3670f83717

27 April 2018

Tarr, SJ and Conway, DJ (2018). Diversity in gene expression profiles captured through highly resolved whole-transcriptome profiling of clinical and laboratory-adapted malaria parasite isolates. [Data Collection]. NCBI Gene Expression Omnibus. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE113718

2 August 2018

Palittapongarnpim, P, Ajawatanawong, P, Viratyosin, W, Smittipat, N, Disratthakit, A, Mahasirimongkol, S, Yanai, H, Yamada, N, Nedsuwan, S, Imasanguan, W, Kantipong, P, Chaiyasirinroje, B, Wongyai, J, Toyo-oka, L, Phelan, J, Parkhill, J, Clark, TG, Hibberd, ML, Ruengchai, W, Palittapongarnpim, P, Juthayothin, T, Tongsima, S and Tokunaga, K (2018). Evidence for Host-Bacterial Co-evolution via Genome Sequence Analysis of 480 Thai Mycobacterium tuberculosis Lineage 1 Isolates. [Data Collection]. Scientific Reports. https://doi.org/10.1038/s41598-018-29986-3

28 August 2018

London School of Hygiene & Tropical Medicine (2018). Plasmodium knowlesi SWGA in clinical isolates. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/data/view/PRJEB28192

1 September 2018

Gonçalves, BP, Kapulu, MC, Sawa, P, Guelbéogo, WM, Tiono, AB, Grignard, L, Stone, WJR, Hellewell, J, Lanke, K, Bastiaens, GJH, Bradley, J, Nébié, I, Ngoi, JM, Oriango, R, Mkabili, D, Nyaurah, M, Midega, J, Wirth, DF, Marsh, K, Churcher, TS, Bejon, P, Sirima, SB, Drakeley, C and Bousema, T (2018). Data from: Examining the human infectious reservoir for Plasmodium falciparum malaria in areas of differing transmission intensity. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.c3n63

12 October 2018

Scriba, TJ, Kimuda, SG, Biraro, IA, Bagaya, BS, Raynes, JG and Cose, S (2018). S1 Data File for: "Characterising antibody avidity in individuals of varied Mycobacterium tuberculosis infection status using surface plasmon resonance". [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0205102.s007

22 January 2019

Dallaku, K, Mansmann, U, Shakur-Still, H, Roberts, I, Delius, MV, Siegmund, B, Gliozheni, O, Tasha, I and Cenameri, S (2019). ETAPLAT dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000970.

12 August 2019

Kumar, N, Browne, HP, Viciani, E, Forster, SC, Clare, S, Harcourt, K, Stares, MD, Dougan, G, Fairley, DJ, Roberts, P, Pirmohamed, M, Clokie, MRJ, Jensen, MBF, Hargreaves, KR, Ip, M, Wieler, LH, Seyboldt, C, Norén, T, Riley, TV, Kuijper, EJ, Wren, BW and Lawley, TD (2019). Adaptation of host transmission cycle during Clostridium difficile speciation. [Data Collection]. Nature Genetics. https://doi.org/10.1038/s41588-019-0478-8

23 September 2019

London School of Hygiene & Tropical Medicine (2019). Comparing antimicrobial resistance prediction pipelines from bacterial whole genome sequencing data: An inter-laboratory study. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/data/view/PRJEB34513

22 October 2019

Marlais, T (2019). Diagnostics development for the neglected parasitic diseases strongyloidiasis and visceral leishmaniasis. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/PUBS.04654991

18 December 2019

Derrick, T (2019). Longitudinal gene expression dataset [The immuno-pathogenesis of progressive scarring trachoma: results of a four-year longitudinal study in Tanzanian children]. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.11401158.v1

16 January 2020

Wyres, KL, Nguyen, TNT, Lam, MMC, Judd, LM, van Vinh Chau, N, Dance, DAB, Ip, M, Karkey, A, Ling, CL, Miliya, T, Newton, PN, Lan, NPH, Sengduangphachanh, A, Turner, P, Veeraraghavan, B, Vinh, PV, Vongsouvath, M, Thomson, NR, Baker, S and Holt, KE (2020). Data for, "Genomic surveillance for hypervirulence and multi-drug resistance in invasive Klebsiella pneumoniae from south and southeast Asia.". [Data Collection]. Monash University. https://doi.org/10.26180/5c67982956721

21 January 2020

Sutherland, C and Henrici, R (2020). The Plasmodium falciparum artemisinin susceptibility-associated AP-2 adaptin mu subunit is clathrin-independent and essential for schizont-maturation v2.0. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001533.

15 June 2020

Tola, M, Ajibola, O, Idowu, ET, Omidiji, O, Awolola, ST and Amambua-Ngwa, A (2020). Additional file 2 of Molecular detection of drug resistant polymorphisms in Plasmodium falciparum isolates from Southwest, Nigeria. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.13152246.v1

14 August 2020

Aubry, F, Dabo, S, Manet, C, Filipovic, I, Rose, NH, Miot, EF, Martynow, D, Baidaliuk, A, Merkling, SH, Dickson, LB, Crist, AB, Anyango, VO, Romero-vivas, CM, Vega-Rua, A, Dusfour, I, Jiolle, D, Paupy, C, Mayanja, MN, Lutwama, JJ, Kohl, A, Duong, V, Ponlawat, A, Sylla, M, Akorli, J, Otoo, S, Lutomiah, J, Sang, R, Mutebi, J, Cao-Lormeau, V, Jarman, RG, Diagne, CT, Faye, O, Faye, O, Sall, AA, McBride, CS, Montagutelli, X, Rasic, G and Lambrechts, L (2020). Enhanced Zika virus susceptibility of globally invasive Aedes aegypti populations. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3981205

18 September 2020

Xu, Y, Stockdale, JE, Naidu, V, Hatherell, H, Stimson, J, Stagg, HR, Abubakar, I and Colijn, C (2020). Transmission analysis of a large TB outbreak in London: a mathematical modelling study using genomic data. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.12413012.v1

22 October 2020

MRC Unit The Gambia at LSHTM (2020). RNAseq from nasopharyngeal swab RNA prior to intranasal live attenuated influenza vaccine in children (human). [Data Collection]. NCBI BioProject. https://www.ncbi.nlm.nih.gov/bioproject/670718

14 January 2021

NatCen Social Research, London School of Hygiene & Tropical Medicine, Russell, M and Senior, M (2021). National Survey of Sexual Attitudes and Lifestyles, 2010-2012: Biological Data: Secure Access. [Data Collection]. UK Data Service. http://doi.org/10.5255/UKDA-SN-8179-1

15 January 2021

Scriba, TJ, Fiore-Gartland, A, Penn-Nicholson, A, Mulenga, H, Kimbung Mbandi, S, Borate, B, Mendelsohn, SC, Hadley, K, Hikuam, C, Kaskar, M, Musvosvi, M, Bilek, N, Self, S, Sumner, T, White, RG, Erasmus, M, Jaxa, L, Raphela, R, Innes, C, Brumskine, W, Hiemstra, A, Malherbe, ST, Hassan-Moosa, R, Tameris, M, Walzl, G, Naidoo, K, Churchyard, G and Hatherill, M (2021). RISK11 signature scores for the biomarker-guided tuberculosis preventive therapy (CORTIS) randomised controlled trial. [Data Collection]. University of Cape Town. https://doi.org/10.25375/uct.13573337.v1

28 January 2021

Stubbs, SC (2021). Molecular characterisation of Crimean-Congo haemorrhagic fever virus detected in African blue ticks feeding on cattle in a Ugandan abattoir. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4282998

2 February 2021

Cortes, T (2021). E-MTAB-8835 - Ribosome profiling of Mycobacterium tuberculosis under nutrient starvation. [Data Collection]. ArrayExpress. https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-8835/

7 April 2021

Jeffries, CL, Cansado-Utrilla, C, Beavogui, AH, Stica, C, Lama, EK, Kristan, M, Irish, SR and Walker, T (2021). Table S2. from Evidence for natural hybridization and novel Wolbachia strain superinfections in the Anopheles gambiae complex from Guinea. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14316674.v1

4 May 2021

London School of Hygiene & Tropical Medicine (2021). Sequencing of M/XDR isoaltes from Pakistan. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/browser/view/PRJEB43284

7 May 2021

Fennell, TG, Blackwell, GA, Thomson, NR and Dorman, MJ (2021). Supporting data for "chiA and gbpA genes are not uniformly distributed amongst diverse Vibrio cholerae". [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.13169189

25 June 2021

Borg, Y, Alsford, S, Zaikin, A and Nesbeth, D (2021). Images of selected cells of the TbGOS02 recombinant Trypanosoma brucei brucei cell line. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14845035.v1

Borg, Y, Alsford, S, Zaikin, A and Nesbeth, D (2021). Sequence of the UbeK trypanosomal degron. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14845035.v1

26 July 2021

Tanner, KT, Sharples, LD, Daniel, RM and Keogh, RH (2021). KamTan/MediationSimulation. [Data Collection]. GitHub. https://github.com/KamTan/MediationSimulation

Beilinson, H, Yadavalli, A, Xiao, J, Corbett, L, Saribasak, H and Schatz, D (2021). The RAG1 N-terminal region regulates the efficiency and pathways of synapsis for V(D)J recombination. [Data Collection]. NCBI Gene Expression Omnibus. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE180734

2 November 2021

Lynham, S and Dawson, L (2021). C. difficle p-cresol production. [Data Collection]. ProteomeXchange. http://proteomecentral.proteomexchange.org/PXD028948

23 November 2021

Band, G, Leffler, EM, Jallow, M, Sisay-Joof, F, Ndila, CM, Macharia, AW, Hubbart, C, Jeffreys, AE, Rowlands, K, Nguyen, T, Goncalves, SM, Ariani, CV, Stalker, J, Pearson, RD, Amato, R, Drury, E, Sirugo, G, D'Alessandro, U, Bojang, KA, Marsh, K, Peshu, N, Conway, DJ, Williams, TN, Rockett, KA and Kwiatkowski, DP (2021). Summary statistics for association tests between human and Plasmodium falciparum genetic variants in 3,346 severe malaria cases from The Gambia and Kenya. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5722497

24 November 2021

Band, G, Leffler, EM, Jallow, M, Sisay-Joof, F, Ndila, CM, Macharia, AW, Hubbart, C, Jeffreys, AE, Rowlands, K, Nguyen, T, Goncalves, SM, Ariani, CV, Stalker, J, Pearson, RD, Amato, R, Drury, E, Sirugo, G, D'Alessandro, U, Bojang, KA, Marsh, K, Peshu, N, Conway, DJ, Williams, TN, Rockett, KA and Kwiatkowski, DP (2021). Sample accession list for "Malaria protection due to sickle haemoglobin depends on parasite genotype". [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5723515

30 January 2022

Jagne, I, Keeley, AJ, Bojang, A, Camara, B, Jallow, E, Senghore, E, Oluwalana, C, Bah, SY, Turner, CE, Sesay, AK, D’alessandro, U, Bottomley, C, De silva, TI and Roca, A (2022). Additional file 1 of Impact of intra-partum azithromycin on carriage of group A streptococcus in the Gambia: a posthoc analysis of a double-blind randomized placebo-controlled trial. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.19092424.v1

3 February 2022

Houghton, J (2022). F6 M. tb knock out mutant Vs wildtype after 24hrs starvation in PBS Tyloxapol. [Data Collection]. Biostudies. https://www.ebi.ac.uk/biostudies/arrayexpress/studies/E-MTAB-9327

7 February 2022

Showering, A (2022). Skin microbiome alters attractiveness to Anopheles mosquitoes. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5997085

17 March 2022

London School of Hygiene & Tropical Medicine (2022). A. baumannii vaccination response. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/browser/view/PRJEB51296

27 April 2022

Lehri, B, Navoly, G, Willcocks, S, Huong, L and Stabler, RA (2022). Campylobacter coli strain, whole genome shotgun sequencing project. [Data Collection]. National Center for Biotechnology Information. https://www.ncbi.nlm.nih.gov/nuccore/JAKGTW000000000

12 May 2022

London School of Hygiene & Tropical Medicine (2022). CDC50 interacting partners of Plasmodium falcipraum. [Data Collection]. PRIDE: PRoteomic IDEntifications Database. https://www.ebi.ac.uk/pride/archive/projects/PXD033834

17 May 2022

London School of Hygiene & Tropical Medicine (2022). Population genetic analysis of Plasmodium knowlesi reveals differential selection and exchange events between Borneo and Peninsular sub-populations. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/browser/view/PRJEB52783

22 May 2022

MRC/UVRI & LSHTM Uganda Research Unit (2022). Measles virus genomes in Uganda. [Data Collection]. NIH National Library of Medicine. https://www.ncbi.nlm.nih.gov/bioproject/PRJNA843031

7 June 2022

Uganda Medical Informatics Centre (2022). APCDR AGV Baganda. [Data Collection]. European Genome-phenome Archive. https://ega-archive.org/datasets/EGAD00010001055

Uganda Medical Informatics Centre (2022). APCDR AGV Project: Low depth (4x) sequence data from an Ugandan population (BAMs). [Data Collection]. European Genome-phenome Archive. https://ega-archive.org/datasets/EGAD00001001008

Uganda Medical Informatics Centre (2022). APCDR Uganda GWAS - High depth sequencing of a Baganda trio. [Data Collection]. European Genome-phenome Archive. https://ega-archive.org/datasets/EGAD00001005346

20 July 2022

London School of Hygiene & Tropical Medicine (2022). Aedes_IR. [Data Collection]. NCBI Bioproject. https://www.ncbi.nlm.nih.gov/bioproject/860473

17 October 2022

Elliott, HR, Burrows, K, Min, JL, Tillin, T, Mason, D, Wright, J, Santorelli, G, Davey Smith, G, Lawlor, DA, Hughes, AD, Chaturvedi, N and Relton, CL (2022). Additional file 3 of Characterisation of ethnic differences in DNA methylation between UK-resident South Asians and Europeans. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.21343076.v1

2 November 2022

Nasher, F, Lehri, B, Horney, M, Stabler, R and Wren, BW (2022). Campylobacter jejuni interactions with Acanthamoeba castellanii. [Data Collection]. NCBI Gene Expression Omnibus. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE206909

7 February 2023

London School of Hygiene & Tropical Medicine (2023). Evaluation of MALDI-TOF MS for molecular typing of Acinetobacter baumannii in comparison with orthogonal methods. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/browser/view/PRJEB59585

9 February 2023

Holt, KE (2023). Global Typhoid Genomics Consortium 2022 - Genome Assemblies. [Data Collection]. Monash University. https://doi.org/10.26180/21431883.v1

10 March 2023

London School of Hygiene & Tropical Medicine (2023). Phylogenetic inference of pneumococcal transmission from cross-sectional data, a pilot study. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/browser/view/PRJEB60532

6 May 2023

London School of Hygiene and Tropical Medicine (2023). Targeted Amplicon Sequencing of Brazilian Anopheles darlingi. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/browser/view/PRJEB61194

6 November 2023

PANGEA-HIV Consortium (2023). PANGEA-HIV/PANGEA-Sequences: v1.0.0. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10075814

30 November 2023

London School of Hygiene & Tropical Medicine (2023). Data for: "Genomic diversity and antimicrobial resistance in clinical Klebsiella pneumoniae isolates from tertiary hospitals in Southern Ghana". [Data Collection]. NCBI Sequence Read Archive. https://trace.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA1052100

16 January 2024

Saleem, F, Ameer, A, Keating, C, Gundogdu, O, Javed, S and Ijaz, UZ (2024). Dataset of 569 metagenome-assembled genomes from the caeca of multiple chicken breeds from commercial and backyard farming setups of Pakistan. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.24901884.v3

21 February 2024

London School of Hygiene & Tropical Medicine (2024). WGS of Ethiopian Anopheles Stephensi. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

27 February 2024

López-jiménez, AT (2024). ATLopezJimenez/Toolset-high-content-analysis-of-Shigella-infection. [Data Collection]. Github. https://github.com/ATLopezJimenez/Toolset-high-content-analysis-of-Shigella-infection

London School of Hygiene & Tropical Medicine (2024). Anopheles gambiae Bijagos 2022 WGS. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/browser/view/PRJEB71957

18 March 2024

López-Jiménez, AT, Brokatzky, D, Pillay, K, Williams, T, Özbaykal Güler, G and Mostowy, S (2024). High-content high-resolution microscopy and deep learning assisted analysis reveals host and bacterial heterogeneity during Shigella infection. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10766626

21 May 2024

Natukunda, A, Zirimenya, L, Nkurunungi, G, Nassuna, J, Elliott, AM and Webb, E (2024). Data supporting “The effect of current helminth infection on vaccine responses among adolescents living in helminth-endemic islands of Lake Victoria, Uganda”. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003862.

7 June 2024

London School of Hygiene & Tropical Medicine (2024). WGS An melas Bijagos Guinea Bissau. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/browser/view/PRJEB75927

21 June 2024

Langston, H, Fortes Francisco, A, Doidge, C, Roberts, CH, Khan, AA, Jayawardhana, S, Taylor, MC, Kelly, JM and Lewis, MD (2024). Source data for: "Dynamics of Trypanosoma cruzi infection in hamsters and novel association with progressive motor dysfunction". [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0012278.s003

24 June 2024

Lugano, D, Kutima, B, Kimani, M, Sigilai, A, Gitonga, J, Karani, A, Akech, D, Karia, B, Ziraba, AK, Maina, A, Lambisia, A, Omuoyo, D, Mugo, D, Lucinde, R, Owuor, S, Konyino, G, Newman, J, Bailey, D, Nduati, E, Githinji, G, Agoti, CN, Bejon, P, Scott, JAG, Agweyu, A, Kagucia, W, Warimwe, GM, Sande, C, Ochola-Oyier, LI and Nyagwange, J (2024). Replication Data for: Evaluation of population immunity against SARS-CoV-2 variants, EG.5.1, FY.4, BA.2.86, JN.1, and JN.1.4, using samples from two health demographic surveillance systems in Kenya. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/6DSHMB

9 July 2024

Syme, T, N'dombidje, B, Todjinou, D, Ariori, V and Ngufor, C (2024). Data for: Laboratory evaluation of the regeneration time, efficacy and wash-resistance of PermaNet® Dual (a deltamethrin-chlorfenapyr net) against susceptible and pyrethroid-resistant strains of Anopheles gambiae sensu lato. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00004261.

9 August 2024

Paulet, E, Contreras, V, Galhaut, M, Rosenkrands, I, Holland, M, Burton, MJ, Dietrich, J, Gallouët, A, Bosquet, N, Relouzat, F, Langlois, S, Follmann, F, Le Grand, R, Labetoulle, M and Rousseau, A (2024). Multimodal mucosal and systemic immune characterization of a non-human primate trachoma model highlights the critical role of local immunity during acute phase disease. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.69p8cz982

15 August 2024

Odufuwa, OG, Bradley, J, Ngonyani, S, Mpelepele, AB, Matanila, I, Muganga, JB, Bosselmann, R, Skovmand, O, Mboma, ZM and Moore, SJ (2024). Additional file 4 of Time of exposure and assessment influence the mortality induced by insecticides against metabolic resistant mosquitoes. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.26687792.v1

23 August 2024

London School of Hygiene & Tropical Medicine (2024). Impact of commercial gut health interventions on caecal metagenome and broiler performance. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/browser/view/PRJEB79352

27 September 2024

London School of Hygiene & Tropical Medicine (2024). Targeted sequencing of Plasmodium falciparum isolates from human blood and infected mosquitoes from Mali. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/browser/view/PRJEB73503

26 November 2024

Stiens, J, Passmore, IJ, Nobeli, I and Kendall, S (2024). TnSEQ analysis measuring fitness costs of insertions in the M. bovis AF2122/97 genome under oxidative stress. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.14223487

30 January 2025

Pangga, GM, Star-Shirko, B, Psifidi, A, Xia, D, Corcionivoschi, N, Kelly, C, Hughes, C, Lavery, U, Richmond, A, Ijaz, UZ and Gundogdu, O (2025). Impact of commercial gut health interventions on caecal metagenome and broiler performance. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.7649575.v1