Holt, KE. 2023. Global Typhoid Genomics Consortium 2022 - Genome Assemblies. [Online]. Monash University. Available from: https://doi.org/10.26180/21431883.v1
Holt, KE. Global Typhoid Genomics Consortium 2022 - Genome Assemblies [Internet]. Monash University; 2023. Available from: https://doi.org/10.26180/21431883.v1
Holt, KE (2023). Global Typhoid Genomics Consortium 2022 - Genome Assemblies. [Data Collection]. Monash University. https://doi.org/10.26180/21431883.v1
Description
Whole genome assemblies of Salmonella enterica serovar Typhi assembled for the Global Typhoid Genomics Consortium paper: "Global diversity and antimicrobial resistance of typhoid fever pathogens: insights from 13,000 Salmonella Typhi genomes" (BioRxiv, 2022). Total n=13,000 genomes, each is gzipped fasta format and then grouped into tar balls based on genotype. Genomes are listed in CSV file TGC_data.csv which includes source and quality information, accessions for raw reads, and genome-derived genotype and AMR variables.
| Data capture method | Experiment: Laboratory |
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| Date (Date published in a 3rd party system) | 9 February 2023 |
| Language(s) of written materials | English |
| Data Creators | Holt, KE |
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| LSHTM Faculty/Department | Faculty of Infectious and Tropical Diseases > Department of Infection Biology |
| Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom |
| Funders |
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| Date Deposited | 14 Sep 2023 13:22 |
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| Last Modified | 22 Sep 2023 13:58 |
| Publisher | Monash University |
