Date Title Item Type No Grouping

Dataset

Investigating microbial population structure and function in the chicken caeca and large intestine over time using metagenomics. (2025) Star-Shirko, Banaz; Pangga, Gladys Maria; McKenna, Aaron; Corcionivoschi, Nicolae; Richmond, Anne; Ijaz, Umer Zeeshan; Gundogdu, Ozan

Convergent evolution of artemisinin and chloroquine resistance in Ethiopian Plasmodium falciparum parasites. (2025) Letebo, Alemayehu; Vanheer, Leen N.; Engdaw, Mengst; Alemayehu, Dawit Hailu; Deressa, Jimma Dinsa; Adnew, Bethlehem; Ayele, Abaysew; Keffale, Migbaru; Demisse, Mulugeta; Seyoum, Tamrayehu; Shiferaw, Meklit; Sime, Heven; Gebreegziabxier, Atsbeha; Shimelash, Amanuel; Tafa, Elias B.; Chali, Wakweya; Alemayehu, Lina; Kassa, Fikregabrail Aberra; Zeleke, Ayalew Jejaw; Hamza, Tajudin Abdurhaman; Tamirat, Abel Beliyu; Misganaw, Tadesse; Bogale, Alayu; Abriham, Zufan Yiheyis; Nasir, Yasin; Jebessa, Gutema; Ejigu, Legesse Alamerie; Yohannes, Metmiku; Kebede, Betelhem Akililu; Ayele, Matiwos Kidane; Abdo, Melat; Habtamu, Getinet; Gizat, Addisu; Phelan, Jody; Matlock, Bryce; Fidock, David A.; Campino, Susana; Assefa, Ashenafi; Koepfli, Cristian; Massebo, Fekadu; Tadesse, Fitsum G.

Dataset for the "Evaluation of the diagnostic accuracy of the ReLASV Pan-Lassa Antigen Rapid Test for Lassa Fever in Nigeria". (2025) Chi, Hanesh F.; Etafo, Johnson; Fonkeng, Fritz; Olufunke, Gbenga-Ayeni; Ireneh, Ronke; Abejegah, Chukwuyem; Owhin, Sampson; Bausch, Daniel G.; Vessiere, Aurelia; Agogo, Emmanuel; Emperador, Devy M.; Nelson, Adedosu A.

Optimization and Characterization of N-Acetamide Indoles as Antimalarials That Target PfATP4. (2025) Awalt, Jon Kyle; Ooi, Zi Kang; Ashton, Trent D.; Mansouri, Mahta; Calic, Petar P. S.; Zhou, Qingmiao; Vasanthan, Santhya; Lee, Serena; Loi, Katie; Jarman, Kate E.; Penington, Jocelyn S.; Qiu, Deyun; Zhang, Xinxin; Lehane, Adele M.; Mao, Emma Y.; Gancheva, Maria R.; Wilson, Danny W.; Giannangelo, Carlo; MacRaild, Christopher A.; Creek, Darren J.; Yeo, Tomas; Sheth, Tanaya; Fidock, David A.; Churchyard, Alisje; Baum, Jake; Famodimu, Mufuliat T.; Delves, Michael J.; Kristan, Mojca; Stewart, Lindsay; Sutherland, Colin J.; Coyle, Rachel; Jagoe, Hannah; Lee, Marcus C. S.; Chowdury, Mrittika; de Koning-Ward, Tania F.; Baud, Delphine; Brand, Stephen; Jackson, Paul F.; Cowman, Alan F.; Dans, Madeline G.; Sleebs, Brad E.

Rapid bacterial identification and resistance detection using a low complexity molecular diagnostic platform in Zimbabwe - Study dataset and codebook. (2025) Mwaturura, Tinashe; Olaru, Ioana D.; Chimhini, Gwendoline; Bwakura-Dangarembizi, Mutsa; Mangiza, Marcia; Chimhuya, Simbarashe; Sado, Belinda; Katunga, Jackie; Tarupiwa, Andrew; Juru, Agnes; Mashe, Tapfumaneyi; Pasi, Christopher; Chuchu, Veronicah; Gansallo, Seyi; Gleeson, Birgitta; Fitzgerald, Felicity; Ferreyra, Cecilia; Kranzer, Katharina

Exploring interrelationships between structural, social, and biological determinants of vaccine impact in Kenya and Uganda: VAnguard community mixed methods study protocol. (2025) Zirimenya, Ludoviko

Impact of commercial gut health interventions on caecal metagenome and broiler performance. (2025) Pangga, Gladys Maria; Star-Shirko, Banaz; Psifidi, Androniki; Xia, Dong; Corcionivoschi, Nicolae; Kelly, Carmel; Hughes, Callie; Lavery, Ursula; Richmond, Anne; Ijaz, Umer Zeeshan; Gundogdu, Ozan

TnSEQ analysis measuring fitness costs of insertions in the M. bovis AF2122/97 genome under oxidative stress. (2024) Stiens, Jennifer; Passmore, Ian J.; Nobeli, Irene; Kendall, Sharon

Targeted sequencing of Plasmodium falciparum isolates from human blood and infected mosquitoes from Mali. (2024) London School of Hygiene & Tropical Medicine

Impact of commercial gut health interventions on caecal metagenome and broiler performance. (2024) London School of Hygiene & Tropical Medicine

Additional file 4 of Time of exposure and assessment influence the mortality induced by insecticides against metabolic resistant mosquitoes. (2024) Odufuwa, Olukayode G.; Bradley, John; Ngonyani, Safina; Mpelepele, Ahmadi Bakari; Matanila, Isaya; Muganga, Joseph B.; Bosselmann, Rune; Skovmand, Ole; Mboma, Zawadi Mageni; Moore, Sarah Jane

Multimodal mucosal and systemic immune characterization of a non-human primate trachoma model highlights the critical role of local immunity during acute phase disease. (2024) Paulet, Elodie; Contreras, Vanessa; Galhaut, Mathilde; Rosenkrands, Ida; Holland, Martin; Burton, Matthew J.; Dietrich, Jes; Gallouët, Anne-Sophie; Bosquet, Nathalie; Relouzat, Françis; Langlois, Sébastien; Follmann, Frank; Le Grand, Roger; Labetoulle, Marc; Rousseau, Antoine

BonoboFlow: Streamlined Viral Genome Assembly and Haplotype Reconstruction from Nanopore Reads. (2024) MRC/UVRI & LSHTM Uganda Research Unit

Data for: Laboratory evaluation of the regeneration time, efficacy and wash-resistance of PermaNet® Dual (a deltamethrin-chlorfenapyr net) against susceptible and pyrethroid-resistant strains of Anopheles gambiae sensu lato. (2024) Syme, Thomas; N'dombidje, Boris; Todjinou, Damien; Ariori, Victoria; Ngufor, Corine grid_on

Effect of intra-partum azithromycin on gut microbiome development in early childhood. (2024) Medical Research Council Unit The Gambia at LSHTM

Replication Data for: Evaluation of population immunity against SARS-CoV-2 variants, EG.5.1, FY.4, BA.2.86, JN.1, and JN.1.4, using samples from two health demographic surveillance systems in Kenya. (2024) Lugano, Doreen; Kutima, Bernadette; Kimani, Makobu; Sigilai, Antipa; Gitonga, John; Karani, Angela; Akech, Donald; Karia, Boniface; Ziraba, Abdhalah K.; Maina, Angela; Lambisia, Arnold; Omuoyo, Donwilliams; Mugo, Daisy; Lucinde, Ruth; Owuor, Sharon; Konyino, Gloria; Newman, Joseph; Bailey, Dalan; Nduati, Eunice; Githinji, George; Agoti, Charles N.; Bejon, Philip; Scott, J. Anthony G.; Agweyu, Ambrose; Kagucia, Wangeci; Warimwe, George M.; Sande, Charles; Ochola-Oyier, Lynette I.; Nyagwange, James

Source data for: "Dynamics of Trypanosoma cruzi infection in hamsters and novel association with progressive motor dysfunction". (2024) Langston, Harry; Fortes Francisco, Amanda; Doidge, Ciaran; Roberts, Chrissy H; Khan, Archie A; Jayawardhana, Shiromani; Taylor, Martin C; Kelly, John M; Lewis, Michael D

WGS An melas Bijagos Guinea Bissau. (2024) London School of Hygiene & Tropical Medicine

Data supporting “The effect of current helminth infection on vaccine responses among adolescents living in helminth-endemic islands of Lake Victoria, Uganda”. (2024) Natukunda, Agnes; Zirimenya, Ludoviko; Nkurunungi, Gyaviira; Nassuna, Jacent; Elliott, Alison M.; Webb, Emily description

High-content high-resolution microscopy and deep learning assisted analysis reveals host and bacterial heterogeneity during Shigella infection. (2024) López-Jiménez, Ana Teresa; Brokatzky, Dominik; Pillay, Kamla; Williams, Tyrese; Özbaykal Güler, Gizem; Mostowy, Serge

ATLopezJimenez/Toolset-high-content-analysis-of-Shigella-infection. (2024) López-jiménez, Ana Teresa

Anopheles gambiae Bijagos 2022 WGS. (2024) London School of Hygiene & Tropical Medicine

WGS of Ethiopian Anopheles Stephensi. (2024) London School of Hygiene & Tropical Medicine

Dataset of 569 metagenome-assembled genomes from the caeca of multiple chicken breeds from commercial and backyard farming setups of Pakistan. (2024) Saleem, Farrukh; Ameer, Aqsa; Keating, Ciara; Gundogdu, Ozan; Javed, Sundus; Ijaz, Umer Zeeshan

Data for: "Genomic diversity and antimicrobial resistance in clinical Klebsiella pneumoniae isolates from tertiary hospitals in Southern Ghana". (2023) London School of Hygiene & Tropical Medicine

PANGEA-HIV/PANGEA-Sequences: v1.0.0. (2023) PANGEA-HIV Consortium

Targeted Amplicon Sequencing of Brazilian Anopheles darlingi. (2023) London School of Hygiene and Tropical Medicine

Phylogenetic inference of pneumococcal transmission from cross-sectional data, a pilot study. (2023) London School of Hygiene & Tropical Medicine

Global Typhoid Genomics Consortium 2022 - Genome Assemblies. (2023) Holt, Kathryn E.

Evaluation of MALDI-TOF MS for molecular typing of Acinetobacter baumannii in comparison with orthogonal methods. (2023) London School of Hygiene & Tropical Medicine

Campylobacter jejuni interactions with Acanthamoeba castellanii. (2022) Nasher, Fauzy; Lehri, Burhan; Horney, Megan; Stabler, Richard; Wren, Brendan W

Additional file 3 of Characterisation of ethnic differences in DNA methylation between UK-resident South Asians and Europeans. (2022) Elliott, Hannah R.; Burrows, Kimberley; Min, Josine L.; Tillin, Therese; Mason, Dan; Wright, John; Santorelli, Gillian; Davey Smith, George; Lawlor, Deborah A.; Hughes, Alun D.; Chaturvedi, Nishi; Relton, Caroline L.

Aedes_IR. (2022) London School of Hygiene & Tropical Medicine

APCDR AGV Baganda. (2022) Uganda Medical Informatics Centre

APCDR AGV Project: Low depth (4x) sequence data from an Ugandan population (BAMs). (2022) Uganda Medical Informatics Centre

APCDR Uganda GWAS - High depth sequencing of a Baganda trio. (2022) Uganda Medical Informatics Centre

Measles virus genomes in Uganda. (2022) MRC/UVRI & LSHTM Uganda Research Unit

Population genetic analysis of Plasmodium knowlesi reveals differential selection and exchange events between Borneo and Peninsular sub-populations. (2022) London School of Hygiene & Tropical Medicine

CDC50 interacting partners of Plasmodium falcipraum. (2022) London School of Hygiene & Tropical Medicine

Campylobacter coli strain, whole genome shotgun sequencing project. (2022) Lehri, Burhan; Navoly, G; Willcocks, Sam; Huong, LQ; Stabler, Richard A

A. baumannii vaccination response. (2022) London School of Hygiene & Tropical Medicine

Skin microbiome alters attractiveness to Anopheles mosquitoes. (2022) Showering, Alicia

F6 M. tb knock out mutant Vs wildtype after 24hrs starvation in PBS Tyloxapol. (2022) Houghton, Joanna

Additional file 1 of Impact of intra-partum azithromycin on carriage of group A streptococcus in the Gambia: a posthoc analysis of a double-blind randomized placebo-controlled trial. (2022) Jagne, Isatou; Keeley, Alexander J.; Bojang, Abdoulie; Camara, Bully; Jallow, Edrissa; Senghore, Elina; Oluwalana, Claire; Bah, Saikou Y.; Turner, Claire E.; Sesay, Abdul Karim; D’alessandro, Umberto; Bottomley, Christian; De silva, Thushan I.; Roca, Anna

Sample accession list for "Malaria protection due to sickle haemoglobin depends on parasite genotype". (2021) Band, Gavin; Leffler, Ellen M.; Jallow, Muminatou; Sisay-Joof, Fatoumatta; Ndila, Carolyne M.; Macharia, Alexander W.; Hubbart, Christina; Jeffreys, Anna E.; Rowlands, Kate; Nguyen, Thuy; Goncalves, Sonia M.; Ariani, Cristina V.; Stalker, Jim; Pearson, Richard D.; Amato, Roberto; Drury, Eleanor; Sirugo, Giorgio; D'Alessandro, Umberto; Bojang, Kalifa A.; Marsh, Kevin; Peshu, Norbert; Conway, David J.; Williams, Thomas N.; Rockett, Kirk A.; Kwiatkowski, Dominic P.

Summary statistics for association tests between human and Plasmodium falciparum genetic variants in 3,346 severe malaria cases from The Gambia and Kenya. (2021) Band, Gavin; Leffler, Ellen M.; Jallow, Muminatou; Sisay-Joof, Fatoumatta; Ndila, Carolyne M.; Macharia, Alexander W.; Hubbart, Christina; Jeffreys, Anna E.; Rowlands, Kate; Nguyen, Thuy; Goncalves, Sonia M.; Ariani, Cristina V.; Stalker, Jim; Pearson, Richard D.; Amato, Roberto; Drury, Eleanor; Sirugo, Giorgio; D'Alessandro, Umberto; Bojang, Kalifa A.; Marsh, Kevin; Peshu, Norbert; Conway, David J.; Williams, Thomas N.; Rockett, Kirk A.; Kwiatkowski, Dominic P.

C. difficle p-cresol production. (2021) Lynham, Steven; Dawson, Lisa

KamTan/MediationSimulation. (2021) Tanner, Kamaryn T; Sharples, Linda D; Daniel, Rhian M; Keogh, Ruth H

The RAG1 N-terminal region regulates the efficiency and pathways of synapsis for V(D)J recombination. (2021) Beilinson, HA; Yadavalli, AD; Xiao, J; Corbett, Liz; Saribasak, H; Schatz, DG

Images of selected cells of the TbGOS02 recombinant Trypanosoma brucei brucei cell line. (2021) Borg, Yanika; Alsford, Sam; Zaikin, Alexey; Nesbeth, Darren

Sequence of the UbeK trypanosomal degron. (2021) Borg, Yanika; Alsford, Sam; Zaikin, Alexey; Nesbeth, Darren

Supporting data for "chiA and gbpA genes are not uniformly distributed amongst diverse Vibrio cholerae". (2021) Fennell, Thea G.; Blackwell, Grace A.; Thomson, Nicholas R.; Dorman, Matthew J.

Sequencing of M/XDR isoaltes from Pakistan. (2021) London School of Hygiene & Tropical Medicine

Table S2. from Evidence for natural hybridization and novel Wolbachia strain superinfections in the Anopheles gambiae complex from Guinea. (2021) Jeffries, Claire L.; Cansado-Utrilla, Cintia; Beavogui, Abdoul H.; Stica, Caleb; Lama, Eugene Kaman; Kristan, Mojca; Irish, Seth R.; Walker, Thomas

E-MTAB-8835 - Ribosome profiling of Mycobacterium tuberculosis under nutrient starvation. (2021) Cortes, Teresa

Molecular characterisation of Crimean-Congo haemorrhagic fever virus detected in African blue ticks feeding on cattle in a Ugandan abattoir. (2021) Stubbs, Samuel CB

RISK11 signature scores for the biomarker-guided tuberculosis preventive therapy (CORTIS) randomised controlled trial. (2021) Scriba, Thomas J; Fiore-Gartland, Andrew; Penn-Nicholson, Adam; Mulenga, Humphrey; Kimbung Mbandi, Stanley; Borate, Bhavesh; Mendelsohn, Simon C; Hadley, Katie; Hikuam, Chris; Kaskar, Masooda; Musvosvi, Munyaradzi; Bilek, Nicole; Self, Steven; Sumner, Tom; White, Richard G; Erasmus, Mzwandile; Jaxa, Lungisa; Raphela, Rodney; Innes, Craig; Brumskine, William; Hiemstra, Andriëtte; Malherbe, Stephanus T; Hassan-Moosa, Razia; Tameris, Michèle; Walzl, Gerhard; Naidoo, Kogieleum; Churchyard, Gavin; Hatherill, Mark

National Survey of Sexual Attitudes and Lifestyles, 2010-2012: Biological Data: Secure Access. (2021) NatCen Social Research; London School of Hygiene & Tropical Medicine; Russell, M.; Senior, M.

RNAseq from nasopharyngeal swab RNA prior to intranasal live attenuated influenza vaccine in children (human). (2020) MRC Unit The Gambia at LSHTM

Transmission analysis of a large TB outbreak in London: a mathematical modelling study using genomic data. (2020) Xu, Yuanwei; Stockdale, Jessica E; Naidu, Vijay; Hatherell, Hollie; Stimson, James; Stagg, Helen R; Abubakar, Ibrahim; Colijn, Caroline

Enhanced Zika virus susceptibility of globally invasive Aedes aegypti populations. (2020) Aubry, Fabien; Dabo, Stéphanie; Manet, Caroline; Filipovic, Igor; Rose, Noah H.; Miot, Elliott F.; Martynow, Daria; Baidaliuk, Artem; Merkling, Sarah H.; Dickson, Laura B.; Crist, Anna B.; Anyango, Victor O.; Romero-vivas, Claudia M.; Vega-Rua, Anubis; Dusfour, Isabelle; Jiolle, Davy; Paupy, Christophe; Mayanja, Martin N.; Lutwama, Julius J.; Kohl, Alain; Duong, Veasna; Ponlawat, Alongkot; Sylla, Massamba; Akorli, Jewelna; Otoo, Sampson; Lutomiah, Joel; Sang, Rosemary; Mutebi, John-Paul; Cao-Lormeau, Van-Mai; Jarman, Richard G.; Diagne, Cheikh T.; Faye, Oumar; Faye, Ousmane; Sall, Amadou A.; McBride, Carolyn S.; Montagutelli, Xavier; Rasic, Gordana; Lambrechts, Louis

Additional file 2 of Molecular detection of drug resistant polymorphisms in Plasmodium falciparum isolates from Southwest, Nigeria. (2020) Tola, Monday; Ajibola, Olumide; Idowu, Emmanuel Taiwo; Omidiji, Olusesan; Awolola, Samson Taiwo; Amambua-Ngwa, Alfred

The Plasmodium falciparum artemisinin susceptibility-associated AP-2 adaptin mu subunit is clathrin-independent and essential for schizont-maturation v2.0. (2020) Sutherland, Colin; Henrici, Ryan

Data for, "Genomic surveillance for hypervirulence and multi-drug resistance in invasive Klebsiella pneumoniae from south and southeast Asia.". (2020) Wyres, Kelly L.; Nguyen, To N. T.; Lam, Margaret M. C.; Judd, Louise M.; van Vinh Chau, Nguyen; Dance, David A. B.; Ip, Margaret; Karkey, Abhilasha; Ling, Clare L.; Miliya, Thyl; Newton, Paul N.; Lan, Nguyen Phu Huong; Sengduangphachanh, Amphone; Turner, Paul; Veeraraghavan, Balaji; Vinh, Phat Voong; Vongsouvath, Manivanh; Thomson, Nicholas R.; Baker, Stephen; Holt, Kathryn E.

Longitudinal gene expression dataset [The immuno-pathogenesis of progressive scarring trachoma: results of a four-year longitudinal study in Tanzanian children]. (2019) Derrick, Tamsyn

Diagnostics development for the neglected parasitic diseases strongyloidiasis and visceral leishmaniasis. (2019) Marlais, Tegwen

Comparing antimicrobial resistance prediction pipelines from bacterial whole genome sequencing data: An inter-laboratory study. (2019) London School of Hygiene & Tropical Medicine

Adaptation of host transmission cycle during Clostridium difficile speciation. (2019) Kumar, Nitin; Browne, Hilary P.; Viciani, Elisa; Forster, Samuel C.; Clare, Simon; Harcourt, Katherine; Stares, Mark D.; Dougan, Gordon; Fairley, Derek J.; Roberts, Paul; Pirmohamed, Munir; Clokie, Martha R. J.; Jensen, Mie Birgitte Frid; Hargreaves, Katherine R.; Ip, Margaret; Wieler, Lothar H.; Seyboldt, Christian; Norén, Torbjörn; Riley, Thomas V.; Kuijper, Ed J.; Wren, Brendan W.; Lawley, Trevor D.

ETAPLAT dataset. (2019) Dallaku, Kastriot; Mansmann, Ultrich; Shakur-Still, Haleema; Roberts, Ian; Delius, Maria Veronika; Siegmund, Braun; Gliozheni, Orion; Tasha, Ilir; Cenameri, Saimir

S1 Data File for: "Characterising antibody avidity in individuals of varied Mycobacterium tuberculosis infection status using surface plasmon resonance". (2018) Scriba, Thomas J.; Kimuda, Simon G.; Biraro, Irene Andia; Bagaya, Bernard S.; Raynes, John G.; Cose, Stephen

Data from: Examining the human infectious reservoir for Plasmodium falciparum malaria in areas of differing transmission intensity. (2018) Gonçalves, Bronner P.; Kapulu, Melissa C.; Sawa, Patrick; Guelbéogo, Wamdaogo M.; Tiono, Alfred B.; Grignard, Lynn; Stone, Will J. R.; Hellewell, Joel; Lanke, Kjerstin; Bastiaens, Guido J. H.; Bradley, John; Nébié, Issa; Ngoi, Joyce M.; Oriango, Robin; Mkabili, Dora; Nyaurah, Maureen; Midega, Janet; Wirth, Dyann F.; Marsh, Kevin; Churcher, Thomas S.; Bejon, Philip; Sirima, Sodiomon B.; Drakeley, Chris; Bousema, Teun

Plasmodium knowlesi SWGA in clinical isolates. (2018) London School of Hygiene & Tropical Medicine

Evidence for Host-Bacterial Co-evolution via Genome Sequence Analysis of 480 Thai Mycobacterium tuberculosis Lineage 1 Isolates. (2018) Palittapongarnpim, Prasit; Ajawatanawong, Pravech; Viratyosin, Wasna; Smittipat, Nat; Disratthakit, Areeya; Mahasirimongkol, Surakameth; Yanai, Hideki; Yamada, Norio; Nedsuwan, Supalert; Imasanguan, Worarat; Kantipong, Pacharee; Chaiyasirinroje, Boonchai; Wongyai, Jiraporn; Toyo-oka, Licht; Phelan, Jody; Parkhill, Julian; Clark, Taane G.; Hibberd, Martin L.; Ruengchai, Wuthiwat; Palittapongarnpim, Panawun; Juthayothin, Tada; Tongsima, Sissades; Tokunaga, Katsushi

Diversity in gene expression profiles captured through highly resolved whole-transcriptome profiling of clinical and laboratory-adapted malaria parasite isolates. (2018) Tarr, Sarah J.; Conway, David J.

Klebsiella ecology and genome plasticity compared to E. coli and Gram negative ESKAPE pathogens. (2018) Holt, Kathryn E.; Wyres, Kelly

Data for: "Clinical signs of trachoma are prevalent among Solomon Islanders who have no persistent markers of prior infection with Chlamydia trachomatis". (2018) Butcher, Robert html

Quantification of huntingtin protein species in Huntington’s disease patient leukocytes using optimised electrochemiluminescence immunoassays. (2017) Hensman Moss, Davina J.; Robertson, Nicola; Farmer, Ruth; Scahill, Rachael I.; Haider, Salman; Tessari, Michela A.; Flynn, Geraldine; Fischer, David F.; Wild, Edward J.; Macdonald, Douglas; Tabrizi, Sarah J.

Preservation of Tetherin and CD4 Counter-Activities in Circulating Vpu Alleles despite Extensive Sequence Variation within HIV-1 Infected Individuals. (2017) Pickering, Suzanne; Hue, Stephane; Kim, Eun-Young; Reddy, Susheel; Wolinsky, Steven M.; Neil, Stuart J. D.

TUMIKIA Project Laboratory Kato-Katz Forms. (2017) Oswald, William; Witek-McManus, Stefan

Primary macrophages and J774 cells respond differently to infection with Mycobacterium tuberculosis. (2017) Andreu, Nuria; Phelan, Jody; de Sessions, Paola F; Cliff, Jackie M.; Clark, Taane; Hibberd, Martin

Measuring high-sensitivity cardiac troponin T blood concentration in population surveys. (2017) Lazzarino, Antonio Ivan; Mindell, Jennifer S.

Whole genome sequencing reveals high-resolution epidemiological links between clinical and environmental Klebsiella pneumoniae. (2017) Runcharoen, Chakkaphan; Moradigaravand, Danesh; Blane, Beth; Paksanont, Suporn; Thammachote, Jeeranan; Anun, Suthatip; Parkhill, Julian; Chantratita, Narisara; Peacock, Sharon J.

The Campylobacter jejuni Oxidative Stress Regulator RrpB Is Associated with a Genomic Hypervariable Region and Altered Oxidative Stress Resistance. (2016) Gundogdu, Ozan; Da Silva, Daiani Teixeira; Mohammad, Banaz; Elmi, Abdi; Wren, Brendan W.; van Vliet, Arnoud H. M.; Dorrell, Nick

Experimental hut data. (2016) N'guessan, Raphael; Odjo, Abibatou; Ngufor, Corine; Malone, David; Rowland, Mark grid_on

Dataset for: Defining seropositivity thresholds for use in trachoma elimination studies. (2016) Migchelsen, Stephanie

Molecular Characterization of Cryptosporidium Species and Giardia duodenalis from Symptomatic Cambodian Children. (2016) Moore, Catrin E.; Elwin, Kristin; Phot, Nget; Seng, Chanthou; Mao, Saroeun; Suy, Kuong; Kumar, Varun; Nader, Johanna; Bousfield, Rachel; Perera, Sanuki; Bailey, J. Wendi; Beeching, Nicholas J.; Day, Nicholas P. J.; Parry, Christopher M.; Chalmers, Rachel M.

Genome-scale comparison of expanded gene families in Plasmodium ovale wallikeri and Plasmodium ovale curtisi with Plasmodium malariae and with other Plasmodium species. (2016) Ansari, Hifzur Rahman; Templeton, Thomas J.; Subudhi, Amit Kumar; Ramaprasad, Abhinay; Tang, Jianxia; Lu, Feng; Naeem, Raeece; Hashish, Yasmeen; Oguike, Mary C.; Benavente, Ernest Diez; Clark, Taane G.; Sutherland, Colin J.; Barnwell, John W.; Culleton, Richard; Cao, Jun; Pain, Arnab

Files for "Evolution and epidemiology of multidrug resistant Klebsiella pneumoniae in the UK and Ireland". (2016) Moradigaravand, Danesh; Martin, Veronique; Peacock, Sharon J.; Parkhill, Julian

Host Immune Responses Differ between M. africanum- and M. tuberculosis-Infected Patients following Standard Anti-tuberculosis Treatment. (2016) Tientcheu, Leopold; Haks, Mariëlle C.; Agbla, Schadrac; Sutherland, Jayne; Adetifa, Ifedayo; Donkor, Simon; Quinten, Edwin; Daramy, Mohammed; Antonio, Martin; Kampmann, Beate; Ottenhoff, Tom H. M.; Dockrell, Hazel; Ota, Martin O.

P. knowlesi DHFR sequence data. (2016) Tsuboi, Takafumi; Grigg, Matthew; Barber, Bridget E.; Marfurt, Jutta; Imwong, Mallika; William, Timothy; Bird, Elspeth; Piera, Kim A.; Aziz, Ammar; Boonyuen, Usa; Drakeley, Chris; Cox, Jonathan; White, Nicholas J.; Cheng, Qin; Yeo, Tsin W.; Auburn, Sarah; Anstey, Nicholas M. description

Assessing within-woman changes in mammographic density: a comparison of fully versus semi-automated area-based approaches. (2016) Busana, Marta; De Stavola, Bianca; Sovio, Ulla; Li, Jingmei; Moss, Sue; Humphreys, Keith; dos Santos Silva, Isabel

Whole-genome sequencing reveals transmission of vancomycin-resistant Enterococcus faecium in a healthcare network. (2016) Brodrick, Hayley J.; Raven, Kathy E.; Harrison, Ewan M.; Blane, Beth; Reuter, Sandra; Török, M. Estée; Parkhill, Julian; Peacock, Sharon description

Mycobacterium tuberculosis Nonthaburi genotype raw reads. (2016) Coker, Olabisi Oluwabukola; Chaiprasert, Angkana; Ngamphiw, Chumpol; Tongsima, Sissades; Regmi, Sanjib Mani; Clark, Taane; Ong, Rick Twee Hee; Teo, Yik-Ying; Prammananan, Therdsak; Palittapongarnpim, Prasit

Staphylococcus Aureus BSAC study data. (2015) Reuter, Sandra; Török, M. Estée; Holden, Matthew T.G.; Reynolds, Rosy; Raven, Kathy E.; Blane, Beth; Donker, Tjibbe; Bentley, Stephen D.; Aanensen, David M.; Grundmann, Hajo; Feil, Edward J.; Spratt, Brian G.; Parkhill, Julian; Peacock, Sharon

Fine-Scale Mapping of the 5q11.2 Breast Cancer Locus Reveals at Least Three Independent Risk Variants Regulating MAP3K1: Supplemental Data. (2014) Glubb, Dylan M.; Maranian, Mel J.; Michailidou, Kyriaki; Pooley, Karen A.; Meyer, Kerstin B.; Kar, Siddhartha; Carlebur, Saskia; O’Reilly, Martin; Betts, Joshua A.; Hillman, Kristine M.; Kaufmann, Susanne; Beesley, Jonathan; Canisius, Sander; Hopper, John L.; Southey, Melissa C.; Tsimiklis, Helen; Apicella, Carmel; Schmidt, Marjanka K.; Broeks, Annegien; Hogervorst, Frans B.; van der Schoot, C. Ellen; Muir, Kenneth; Lophatananon, Artitaya; Stewart-Brown, Sarah; Siriwanarangsan, Pornthep; Fasching, Peter A.; Ruebner, Matthias; Ekici, Arif B.; Beckmann, Matthias W.; Peto, Julian; Silva, Isabel; Fletcher, Olivia; Johnson, Nichola; Pharoah, Paul D.P.; Bolla, Manjeet K.; Wang, Qin; Dennis, Joe; Sawyer, Elinor J.; Tomlinson, Ian; Kerin, Michael J.; Miller, Nicola; Burwinkel, Barbara; Marme, Frederik; Yang, Rongxi; Surowy, Harald; Guénel, Pascal; Truong, Thérèse; Menegaux, Florence; Sanchez, Marie; Bojesen, Stig E.; Nordestgaard, Børge G.; Nielsen, Sune F.; Flyger, Henrik; González-Neira, Anna; Benitez, Javier; Zamora, M. Pilar; Arias Perez, Jose Ignacio; Anton-Culver, Hoda; Neuhausen, Susan L.; Brenner, Hermann; Dieffenbach, Aida Karina; Arndt, Volker; Stegmaier, Christa; Meindl, Alfons; Schmutzler, Rita K.; Brauch, Hiltrud; Ko, Yon-Dschun; Brüning, Thomas; Nevanlinna, Heli; Muranen, Taru A.; Aittomäki, Kristiina; Blomqvist, Carl; Matsuo, Keitaro; Ito, Hidemi; Iwata, Hiroji; Tanaka, Hideo; Dörk, Thilo; Bogdanova, Natalia V.; Helbig, Sonja; Lindblom, Annika; Margolin, Sara; Mannermaa, Arto; Kataja, Vesa; Kosma, Veli-Matti; Hartikainen, Jaana M.; Wu, Anna H.; Tseng, Chiu-chen; Van Den Berg, David; Stram, Daniel O.; Lambrechts, Diether; Zhao, Hui; Weltens, Caroline; van Limbergen, Erik; Chang-Claude, Jenny; Flesch-Janys, Dieter; Rudolph, Anja; Seibold, Petra; Radice, Paolo; Peterlongo, Paolo; Barile, Monica; Capra, Fabio; Couch, Fergus J.; Olson, Janet E.; Hallberg, Emily; Vachon, Celine; Giles, Graham G.; Milne, Roger L.; McLean, Catriona; Haiman, Christopher A.; Henderson, Brian E.; Schumacher, Fredrick; Le Marchand, Loic; Simard, Jacques; Goldberg, Mark S.; Labrèche, France; Dumont, Martine; Teo, Soo Hwang; Yip, Cheng Har; See, Mee-Hoong; Cornes, Belinda; Cheng, Ching-Yu; Ikram, M. Kamran; Kristensen, Vessela; Zheng, Wei; Halverson, Sandra L.; Shrubsole, Martha; Long, Jirong; Winqvist, Robert; Pylkäs, Katri; Jukkola-Vuorinen, Arja; Kauppila, Saila; Andrulis, Irene L.; Knight, Julia A.; Glendon, Gord; Tchatchou, Sandrine; Devilee, Peter; Tollenaar, Robert A.E.M.; Seynaeve, Caroline; Van Asperen, Christi J.; García-Closas, Montserrat; Figueroa, Jonine; Chanock, Stephen J.; Lissowska, Jolanta; Czene, Kamila; Klevebring, Daniel; Darabi, Hatef; Eriksson, Mikael; Hooning, Maartje J.; Hollestelle, Antoinette; Martens, John W.M.; Collée, J. Margriet; Hall, Per; Li, Jingmei; Humphreys, Keith; Shu, Xiao-Ou; Lu, Wei; Gao, Yu-Tang; Cai, Hui; Cox, Angela; Cross, Simon S.; Reed, Malcolm W.R.; Blot, William; Signorello, Lisa B.; Cai, Qiuyin; Shah, Mitul; Ghoussaini, Maya; Kang, Daehee; Choi, Ji-Yeob; Park, Sue K.; Noh, Dong-Young; Hartman, Mikael; Miao, Hui; Lim, Wei Yen; Tang, Anthony; Hamann, Ute; Torres, Diana; Jakubowska, Anna; Lubinski, Jan; Jaworska, Katarzyna; Durda, Katarzyna; Sangrajrang, Suleeporn; Gaborieau, Valerie; Brennan, Paul; McKay, James; Olswold, Curtis; Slager, Susan; Toland, Amanda E.; Yannoukakos, Drakoulis; Shen, Chen-Yang; Wu, Pei-Ei; Yu, Jyh-Cherng; Hou, Ming-Feng; Swerdlow, Anthony; Ashworth, Alan; Orr, Nick; Jones, Michael; Pita, Guillermo; Alonso, M. Rosario; Álvarez, Nuria; Herrero, Daniel; Tessier, Daniel C.; Vincent, Daniel; Bacot, Francois; Luccarini, Craig; Baynes, Caroline; Ahmed, Shahana; Healey, Catherine S.; Brown, Melissa A.; Ponder, Bruce A.J.; Chenevix-Trench, Georgia; Thompson, Deborah J.; Edwards, Stacey L.; Easton, Douglas F.; Dunning, Alison M.; French, Juliet D.

Generation of Antigenic Diversity in Plasmodium falciparum by Structured Rearrangement of Var Genes During Mitosis. (2014) Claessens, Antoine; Hamilton, William L; Kekre, Mihir; Otto, Thomas D; Faizullabhoy, Adnan; Rayner, Julian C; Kwiatkowski, Dominic

Robust Identification of Noncoding RNA from Transcriptomes Requires Phylogenetically-Informed Sampling. (2014) Lindgreen, Stinus; Umu, Sinan Uğur; Lai, Alicia Sook-Wei; Eldai, Hisham; Liu, Wenting; McGimpsey, Stephanie; Wheeler, Nicole E.; Biggs, Patrick J.; Thomson, Nick R.; Barquist, Lars; Poole, Anthony M.; Gardner, Paul P.

Unusual stability of messenger RNA in snake venom reveals gene expression dynamics of venom replenishment. (2012) Currier, Rachel; Calvete, Juan J; Sanz, Libia; Harrison, Robert A; Rowley, Paul D; Wagstaff, Simon C

Phase Ia clinical evaluation of the safety and immunogenicity of the Plasmodium falciparum blood-stage antigen AMA1 in ChAd63 and MVA vaccine vectors. (2012) Sheehy, Susanne H; Duncan, Christopher J. A.; Elias, Sean C.; Biswas, Sumi; Collins, Katharine A.; O'hara, Geraldine; Halstead, Fenella D.; Ewer, Katie J.; Mahungu, Tabitha; Spencer, Alexandra J.; Miura, Kazutoyo; Poulton, Ian D.; Dicks, Matthew D. J.; Edwards, Nick J.; Berrie, Eleanor; Moyle, Sarah; Colloca, Stefano; Cortese, Riccardo; Gantlett, Katherine; Long, Carole A.; Lawrie, Alison M.; Gilbert, Sarah C.; Doherty, Tom; Nicosia, Alfredo; Hill, Adrian V. S.; Draper, Simon J.

Design of a variant surface antigen-supplemented microarray chip for whole transcriptome analysis of multiple Plasmodium falciparum cytoadherent strains, and identification of strain-transcendent rif and stevor genes: Additional files. (2011) Claessens, Antoine; Ghumra, Ashfaq; Gupta, Archna P; Mok, Sachel; Bozdech, Zbynek; Rowe, J Alexandra

Identification and characterisation of bacterial TIR domains, with particular focus on yersinia pestis: Study Data. (2011) Spear, Abigail Mary grid_on

Putative DNA G-quadruplex formation within the promoters of Plasmodium falciparum var genes: Supplementary data. (2009) Smargiasso, Nicolas; Gabelica, Valérie; Damblon, Christian; Rosu, Frédéric; De Pauw, Edwin; Teulade-Fichou, Marie-Paule; Rowe, Alexandra; Claessens, Antoine

The genome of Rhizobium leguminosarum has recognizable core and accessory components. (2006) Young, J Peter W; Crossman, Lisa C; Johnston, Andrew WB; Thomson, Nick; Ghazoui, Zara F; Hull, Katherine H; Wexler, Margaret; Curson, Andrew RJ; Todd, Jonathan D; Poole, Philip S; Mauchline, Tim H; East, Alison K; Quail, Michael A; Churcher, Carol; Arrowsmith, Claire; Cherevach, Inna; Chillingworth, Tracey; Clarke, Kay; Cronin, Ann; Davis, Paul; Fraser, Audrey; Hance, Zahra; Hauser, Heidi; Jagels, Kay; Moule, Sharon; Mungall, Karen; Norbertczak, Halina; Rabbinowitsch, Ester; Sanders, Mandy; Simmonds, Mark; Whitehead, Sally; Parkhill, Julian