Data Collection

Pangga, GM, Star-Shirko, B, Psifidi, A, Xia, D, Corcionivoschi, N, Kelly, C, Hughes, C, Lavery, U, Richmond, A, Ijaz, UZ and Gundogdu, O (2025). Impact of commercial gut health interventions on caecal metagenome and broiler performance. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.7649575.v1

Stiens, J, Passmore, IJ, Nobeli, I and Kendall, S (2024). TnSEQ analysis measuring fitness costs of insertions in the M. bovis AF2122/97 genome under oxidative stress. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.14223487

London School of Hygiene & Tropical Medicine (2024). Targeted sequencing of Plasmodium falciparum isolates from human blood and infected mosquitoes from Mali. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/browser/view/PRJEB73503

London School of Hygiene & Tropical Medicine (2024). Impact of commercial gut health interventions on caecal metagenome and broiler performance. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/browser/view/PRJEB79352

Odufuwa, OG, Bradley, J, Ngonyani, S, Mpelepele, AB, Matanila, I, Muganga, JB, Bosselmann, R, Skovmand, O, Mboma, ZM and Moore, SJ (2024). Additional file 4 of Time of exposure and assessment influence the mortality induced by insecticides against metabolic resistant mosquitoes. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.26687792.v1

Paulet, E, Contreras, V, Galhaut, M, Rosenkrands, I, Holland, M, Burton, MJ, Dietrich, J, Gallouët, A, Bosquet, N, Relouzat, F, Langlois, S, Follmann, F, Le Grand, R, Labetoulle, M and Rousseau, A (2024). Multimodal mucosal and systemic immune characterization of a non-human primate trachoma model highlights the critical role of local immunity during acute phase disease. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.69p8cz982

Syme, T, N'dombidje, B, Todjinou, D, Ariori, V and Ngufor, C (2024). Data for: Laboratory evaluation of the regeneration time, efficacy and wash-resistance of PermaNet® Dual (a deltamethrin-chlorfenapyr net) against susceptible and pyrethroid-resistant strains of Anopheles gambiae sensu lato. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00004261.

Lugano, D, Kutima, B, Kimani, M, Sigilai, A, Gitonga, J, Karani, A, Akech, D, Karia, B, Ziraba, AK, Maina, A, Lambisia, A, Omuoyo, D, Mugo, D, Lucinde, R, Owuor, S, Konyino, G, Newman, J, Bailey, D, Nduati, E, Githinji, G, Agoti, CN, Bejon, P, Scott, JAG, Agweyu, A, Kagucia, W, Warimwe, GM, Sande, C, Ochola-Oyier, LI and Nyagwange, J (2024). Replication Data for: Evaluation of population immunity against SARS-CoV-2 variants, EG.5.1, FY.4, BA.2.86, JN.1, and JN.1.4, using samples from two health demographic surveillance systems in Kenya. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/6DSHMB

Langston, H, Fortes Francisco, A, Doidge, C, Roberts, CH, Khan, AA, Jayawardhana, S, Taylor, MC, Kelly, JM and Lewis, MD (2024). Source data for: "Dynamics of Trypanosoma cruzi infection in hamsters and novel association with progressive motor dysfunction". [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0012278.s003

London School of Hygiene & Tropical Medicine (2024). WGS An melas Bijagos Guinea Bissau. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/browser/view/PRJEB75927

Natukunda, A, Zirimenya, L, Nkurunungi, G, Nassuna, J, Elliott, AM and Webb, E (2024). Data supporting “The effect of current helminth infection on vaccine responses among adolescents living in helminth-endemic islands of Lake Victoria, Uganda”. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003862.

López-Jiménez, AT, Brokatzky, D, Pillay, K, Williams, T, Özbaykal Güler, G and Mostowy, S (2024). High-content high-resolution microscopy and deep learning assisted analysis reveals host and bacterial heterogeneity during Shigella infection. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10766626

López-jiménez, AT (2024). ATLopezJimenez/Toolset-high-content-analysis-of-Shigella-infection. [Data Collection]. Github. https://github.com/ATLopezJimenez/Toolset-high-content-analysis-of-Shigella-infection

London School of Hygiene & Tropical Medicine (2024). Anopheles gambiae Bijagos 2022 WGS. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/browser/view/PRJEB71957

London School of Hygiene & Tropical Medicine (2024). WGS of Ethiopian Anopheles Stephensi. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Saleem, F, Ameer, A, Keating, C, Gundogdu, O, Javed, S and Ijaz, UZ (2024). Dataset of 569 metagenome-assembled genomes from the caeca of multiple chicken breeds from commercial and backyard farming setups of Pakistan. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.24901884.v3

London School of Hygiene & Tropical Medicine (2023). Data for: "Genomic diversity and antimicrobial resistance in clinical Klebsiella pneumoniae isolates from tertiary hospitals in Southern Ghana". [Data Collection]. NCBI Sequence Read Archive. https://trace.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA1052100

PANGEA-HIV Consortium (2023). PANGEA-HIV/PANGEA-Sequences: v1.0.0. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10075814

London School of Hygiene and Tropical Medicine (2023). Targeted Amplicon Sequencing of Brazilian Anopheles darlingi. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/browser/view/PRJEB61194

London School of Hygiene & Tropical Medicine (2023). Phylogenetic inference of pneumococcal transmission from cross-sectional data, a pilot study. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/browser/view/PRJEB60532

Holt, KE (2023). Global Typhoid Genomics Consortium 2022 - Genome Assemblies. [Data Collection]. Monash University. https://doi.org/10.26180/21431883.v1

London School of Hygiene & Tropical Medicine (2023). Evaluation of MALDI-TOF MS for molecular typing of Acinetobacter baumannii in comparison with orthogonal methods. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/browser/view/PRJEB59585

Nasher, F, Lehri, B, Horney, M, Stabler, R and Wren, BW (2022). Campylobacter jejuni interactions with Acanthamoeba castellanii. [Data Collection]. NCBI Gene Expression Omnibus. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE206909

Elliott, HR, Burrows, K, Min, JL, Tillin, T, Mason, D, Wright, J, Santorelli, G, Davey Smith, G, Lawlor, DA, Hughes, AD, Chaturvedi, N and Relton, CL (2022). Additional file 3 of Characterisation of ethnic differences in DNA methylation between UK-resident South Asians and Europeans. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.21343076.v1

London School of Hygiene & Tropical Medicine (2022). Aedes_IR. [Data Collection]. NCBI Bioproject. https://www.ncbi.nlm.nih.gov/bioproject/860473

Uganda Medical Informatics Centre (2022). APCDR AGV Baganda. [Data Collection]. European Genome-phenome Archive. https://ega-archive.org/datasets/EGAD00010001055

Uganda Medical Informatics Centre (2022). APCDR AGV Project: Low depth (4x) sequence data from an Ugandan population (BAMs). [Data Collection]. European Genome-phenome Archive. https://ega-archive.org/datasets/EGAD00001001008

Uganda Medical Informatics Centre (2022). APCDR Uganda GWAS - High depth sequencing of a Baganda trio. [Data Collection]. European Genome-phenome Archive. https://ega-archive.org/datasets/EGAD00001005346

MRC/UVRI & LSHTM Uganda Research Unit (2022). Measles virus genomes in Uganda. [Data Collection]. NIH National Library of Medicine. https://www.ncbi.nlm.nih.gov/bioproject/PRJNA843031

London School of Hygiene & Tropical Medicine (2022). Population genetic analysis of Plasmodium knowlesi reveals differential selection and exchange events between Borneo and Peninsular sub-populations. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/browser/view/PRJEB52783

London School of Hygiene & Tropical Medicine (2022). CDC50 interacting partners of Plasmodium falcipraum. [Data Collection]. PRIDE: PRoteomic IDEntifications Database. https://www.ebi.ac.uk/pride/archive/projects/PXD033834

Lehri, B, Navoly, G, Willcocks, S, Huong, L and Stabler, RA (2022). Campylobacter coli strain, whole genome shotgun sequencing project. [Data Collection]. National Center for Biotechnology Information. https://www.ncbi.nlm.nih.gov/nuccore/JAKGTW000000000

London School of Hygiene & Tropical Medicine (2022). A. baumannii vaccination response. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/browser/view/PRJEB51296

Showering, A (2022). Skin microbiome alters attractiveness to Anopheles mosquitoes. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5997085

Houghton, J (2022). F6 M. tb knock out mutant Vs wildtype after 24hrs starvation in PBS Tyloxapol. [Data Collection]. Biostudies. https://www.ebi.ac.uk/biostudies/arrayexpress/studies/E-MTAB-9327

Jagne, I, Keeley, AJ, Bojang, A, Camara, B, Jallow, E, Senghore, E, Oluwalana, C, Bah, SY, Turner, CE, Sesay, AK, D’alessandro, U, Bottomley, C, De silva, TI and Roca, A (2022). Additional file 1 of Impact of intra-partum azithromycin on carriage of group A streptococcus in the Gambia: a posthoc analysis of a double-blind randomized placebo-controlled trial. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.19092424.v1

Band, G, Leffler, EM, Jallow, M, Sisay-Joof, F, Ndila, CM, Macharia, AW, Hubbart, C, Jeffreys, AE, Rowlands, K, Nguyen, T, Goncalves, SM, Ariani, CV, Stalker, J, Pearson, RD, Amato, R, Drury, E, Sirugo, G, D'Alessandro, U, Bojang, KA, Marsh, K, Peshu, N, Conway, DJ, Williams, TN, Rockett, KA and Kwiatkowski, DP (2021). Sample accession list for "Malaria protection due to sickle haemoglobin depends on parasite genotype". [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5723515

Band, G, Leffler, EM, Jallow, M, Sisay-Joof, F, Ndila, CM, Macharia, AW, Hubbart, C, Jeffreys, AE, Rowlands, K, Nguyen, T, Goncalves, SM, Ariani, CV, Stalker, J, Pearson, RD, Amato, R, Drury, E, Sirugo, G, D'Alessandro, U, Bojang, KA, Marsh, K, Peshu, N, Conway, DJ, Williams, TN, Rockett, KA and Kwiatkowski, DP (2021). Summary statistics for association tests between human and Plasmodium falciparum genetic variants in 3,346 severe malaria cases from The Gambia and Kenya. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5722497

Lynham, S and Dawson, L (2021). C. difficle p-cresol production. [Data Collection]. ProteomeXchange. http://proteomecentral.proteomexchange.org/PXD028948

Tanner, KT, Sharples, LD, Daniel, RM and Keogh, RH (2021). KamTan/MediationSimulation. [Data Collection]. GitHub. https://github.com/KamTan/MediationSimulation

Beilinson, H, Yadavalli, A, Xiao, J, Corbett, L, Saribasak, H and Schatz, D (2021). The RAG1 N-terminal region regulates the efficiency and pathways of synapsis for V(D)J recombination. [Data Collection]. NCBI Gene Expression Omnibus. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE180734

Borg, Y, Alsford, S, Zaikin, A and Nesbeth, D (2021). Images of selected cells of the TbGOS02 recombinant Trypanosoma brucei brucei cell line. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14845035.v1

Borg, Y, Alsford, S, Zaikin, A and Nesbeth, D (2021). Sequence of the UbeK trypanosomal degron. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14845035.v1

Fennell, TG, Blackwell, GA, Thomson, NR and Dorman, MJ (2021). Supporting data for "chiA and gbpA genes are not uniformly distributed amongst diverse Vibrio cholerae". [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.13169189

London School of Hygiene & Tropical Medicine (2021). Sequencing of M/XDR isoaltes from Pakistan. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/browser/view/PRJEB43284

Jeffries, CL, Cansado-Utrilla, C, Beavogui, AH, Stica, C, Lama, EK, Kristan, M, Irish, SR and Walker, T (2021). Table S2. from Evidence for natural hybridization and novel Wolbachia strain superinfections in the Anopheles gambiae complex from Guinea. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14316674.v1

Cortes, T (2021). E-MTAB-8835 - Ribosome profiling of Mycobacterium tuberculosis under nutrient starvation. [Data Collection]. ArrayExpress. https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-8835/

Stubbs, SC (2021). Molecular characterisation of Crimean-Congo haemorrhagic fever virus detected in African blue ticks feeding on cattle in a Ugandan abattoir. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4282998

Scriba, TJ, Fiore-Gartland, A, Penn-Nicholson, A, Mulenga, H, Kimbung Mbandi, S, Borate, B, Mendelsohn, SC, Hadley, K, Hikuam, C, Kaskar, M, Musvosvi, M, Bilek, N, Self, S, Sumner, T, White, RG, Erasmus, M, Jaxa, L, Raphela, R, Innes, C, Brumskine, W, Hiemstra, A, Malherbe, ST, Hassan-Moosa, R, Tameris, M, Walzl, G, Naidoo, K, Churchyard, G and Hatherill, M (2021). RISK11 signature scores for the biomarker-guided tuberculosis preventive therapy (CORTIS) randomised controlled trial. [Data Collection]. University of Cape Town. https://doi.org/10.25375/uct.13573337.v1

NatCen Social Research, London School of Hygiene & Tropical Medicine, Russell, M and Senior, M (2021). National Survey of Sexual Attitudes and Lifestyles, 2010-2012: Biological Data: Secure Access. [Data Collection]. UK Data Service. http://doi.org/10.5255/UKDA-SN-8179-1

MRC Unit The Gambia at LSHTM (2020). RNAseq from nasopharyngeal swab RNA prior to intranasal live attenuated influenza vaccine in children (human). [Data Collection]. NCBI BioProject. https://www.ncbi.nlm.nih.gov/bioproject/670718

Xu, Y, Stockdale, JE, Naidu, V, Hatherell, H, Stimson, J, Stagg, HR, Abubakar, I and Colijn, C (2020). Transmission analysis of a large TB outbreak in London: a mathematical modelling study using genomic data. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.12413012.v1

Aubry, F, Dabo, S, Manet, C, Filipovic, I, Rose, NH, Miot, EF, Martynow, D, Baidaliuk, A, Merkling, SH, Dickson, LB, Crist, AB, Anyango, VO, Romero-vivas, CM, Vega-Rua, A, Dusfour, I, Jiolle, D, Paupy, C, Mayanja, MN, Lutwama, JJ, Kohl, A, Duong, V, Ponlawat, A, Sylla, M, Akorli, J, Otoo, S, Lutomiah, J, Sang, R, Mutebi, J, Cao-Lormeau, V, Jarman, RG, Diagne, CT, Faye, O, Faye, O, Sall, AA, McBride, CS, Montagutelli, X, Rasic, G and Lambrechts, L (2020). Enhanced Zika virus susceptibility of globally invasive Aedes aegypti populations. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3981205

Tola, M, Ajibola, O, Idowu, ET, Omidiji, O, Awolola, ST and Amambua-Ngwa, A (2020). Additional file 2 of Molecular detection of drug resistant polymorphisms in Plasmodium falciparum isolates from Southwest, Nigeria. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.13152246.v1

Sutherland, C and Henrici, R (2020). The Plasmodium falciparum artemisinin susceptibility-associated AP-2 adaptin mu subunit is clathrin-independent and essential for schizont-maturation v2.0. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001533.

Wyres, KL, Nguyen, TNT, Lam, MMC, Judd, LM, van Vinh Chau, N, Dance, DAB, Ip, M, Karkey, A, Ling, CL, Miliya, T, Newton, PN, Lan, NPH, Sengduangphachanh, A, Turner, P, Veeraraghavan, B, Vinh, PV, Vongsouvath, M, Thomson, NR, Baker, S and Holt, KE (2020). Data for, "Genomic surveillance for hypervirulence and multi-drug resistance in invasive Klebsiella pneumoniae from south and southeast Asia.". [Data Collection]. Monash University. https://doi.org/10.26180/5c67982956721

Derrick, T (2019). Longitudinal gene expression dataset [The immuno-pathogenesis of progressive scarring trachoma: results of a four-year longitudinal study in Tanzanian children]. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.11401158.v1

Marlais, T (2019). Diagnostics development for the neglected parasitic diseases strongyloidiasis and visceral leishmaniasis. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/PUBS.04654991

London School of Hygiene & Tropical Medicine (2019). Comparing antimicrobial resistance prediction pipelines from bacterial whole genome sequencing data: An inter-laboratory study. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/data/view/PRJEB34513

Kumar, N, Browne, HP, Viciani, E, Forster, SC, Clare, S, Harcourt, K, Stares, MD, Dougan, G, Fairley, DJ, Roberts, P, Pirmohamed, M, Clokie, MRJ, Jensen, MBF, Hargreaves, KR, Ip, M, Wieler, LH, Seyboldt, C, Norén, T, Riley, TV, Kuijper, EJ, Wren, BW and Lawley, TD (2019). Adaptation of host transmission cycle during Clostridium difficile speciation. [Data Collection]. Nature Genetics. https://doi.org/10.1038/s41588-019-0478-8

Dallaku, K, Mansmann, U, Shakur-Still, H, Roberts, I, Delius, MV, Siegmund, B, Gliozheni, O, Tasha, I and Cenameri, S (2019). ETAPLAT dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000970.

Scriba, TJ, Kimuda, SG, Biraro, IA, Bagaya, BS, Raynes, JG and Cose, S (2018). S1 Data File for: "Characterising antibody avidity in individuals of varied Mycobacterium tuberculosis infection status using surface plasmon resonance". [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0205102.s007

Gonçalves, BP, Kapulu, MC, Sawa, P, Guelbéogo, WM, Tiono, AB, Grignard, L, Stone, WJR, Hellewell, J, Lanke, K, Bastiaens, GJH, Bradley, J, Nébié, I, Ngoi, JM, Oriango, R, Mkabili, D, Nyaurah, M, Midega, J, Wirth, DF, Marsh, K, Churcher, TS, Bejon, P, Sirima, SB, Drakeley, C and Bousema, T (2018). Data from: Examining the human infectious reservoir for Plasmodium falciparum malaria in areas of differing transmission intensity. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.c3n63

London School of Hygiene & Tropical Medicine (2018). Plasmodium knowlesi SWGA in clinical isolates. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/data/view/PRJEB28192

Palittapongarnpim, P, Ajawatanawong, P, Viratyosin, W, Smittipat, N, Disratthakit, A, Mahasirimongkol, S, Yanai, H, Yamada, N, Nedsuwan, S, Imasanguan, W, Kantipong, P, Chaiyasirinroje, B, Wongyai, J, Toyo-oka, L, Phelan, J, Parkhill, J, Clark, TG, Hibberd, ML, Ruengchai, W, Palittapongarnpim, P, Juthayothin, T, Tongsima, S and Tokunaga, K (2018). Evidence for Host-Bacterial Co-evolution via Genome Sequence Analysis of 480 Thai Mycobacterium tuberculosis Lineage 1 Isolates. [Data Collection]. Scientific Reports. https://doi.org/10.1038/s41598-018-29986-3

Tarr, SJ and Conway, DJ (2018). Diversity in gene expression profiles captured through highly resolved whole-transcriptome profiling of clinical and laboratory-adapted malaria parasite isolates. [Data Collection]. NCBI Gene Expression Omnibus. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE113718

Holt, KE and Wyres, K (2018). Klebsiella ecology and genome plasticity compared to E. coli and Gram negative ESKAPE pathogens. [Data Collection]. University of Melbourne, Australia. https://doi.org/10.4225/49/5ac3670f83717

Butcher, R (2018). Data for: "Clinical signs of trachoma are prevalent among Solomon Islanders who have no persistent markers of prior infection with Chlamydia trachomatis". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000795.

Hensman Moss, DJ, Robertson, N, Farmer, R, Scahill, RI, Haider, S, Tessari, MA, Flynn, G, Fischer, DF, Wild, EJ, Macdonald, D and Tabrizi, SJ (2017). Quantification of huntingtin protein species in Huntington’s disease patient leukocytes using optimised electrochemiluminescence immunoassays. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0189891

Pickering, S, Hue, S, Kim, E, Reddy, S, Wolinsky, SM and Neil, SJD (2017). Preservation of Tetherin and CD4 Counter-Activities in Circulating Vpu Alleles despite Extensive Sequence Variation within HIV-1 Infected Individuals. [Data Collection]. Figshare. https://doi.org/10.1371/journal.ppat.1003895

Oswald, W and Witek-McManus, S (2017). TUMIKIA Project Laboratory Kato-Katz Forms. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001312.

Andreu, N, Phelan, J, de Sessions, PF, Cliff, JM, Clark, T and Hibberd, M (2017). Primary macrophages and J774 cells respond differently to infection with Mycobacterium tuberculosis. [Data Collection]. Gene Expression Omnibus. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE88801

Lazzarino, AI and Mindell, JS (2017). Measuring high-sensitivity cardiac troponin T blood concentration in population surveys. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0171242.s001

Runcharoen, C, Moradigaravand, D, Blane, B, Paksanont, S, Thammachote, J, Anun, S, Parkhill, J, Chantratita, N and Peacock, SJ (2017). Whole genome sequencing reveals high-resolution epidemiological links between clinical and environmental Klebsiella pneumoniae. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.3673891

Gundogdu, O, Da Silva, DT, Mohammad, B, Elmi, A, Wren, BW, van Vliet, AHM and Dorrell, N (2016). The Campylobacter jejuni Oxidative Stress Regulator RrpB Is Associated with a Genomic Hypervariable Region and Altered Oxidative Stress Resistance. [Data Collection]. Frontiers in Microbiology. http://dx.doi.org/10.3389/fmicb.2016.02117

N'guessan, R, Odjo, A, Ngufor, C, Malone, D and Rowland, M (2016). Experimental hut data. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0165925.s001

Migchelsen, S (2016). Dataset for: Defining seropositivity thresholds for use in trachoma elimination studies. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.111.

Moore, CE, Elwin, K, Phot, N, Seng, C, Mao, S, Suy, K, Kumar, V, Nader, J, Bousfield, R, Perera, S, Bailey, JW, Beeching, NJ, Day, NPJ, Parry, CM and Chalmers, RM (2016). Molecular Characterization of Cryptosporidium Species and Giardia duodenalis from Symptomatic Cambodian Children. [Data Collection]. PLoS neglected tropical diseases. http://dx.doi.org/10.1371/journal.pntd.0004822.s002

Ansari, HR, Templeton, TJ, Subudhi, AK, Ramaprasad, A, Tang, J, Lu, F, Naeem, R, Hashish, Y, Oguike, MC, Benavente, ED, Clark, TG, Sutherland, CJ, Barnwell, JW, Culleton, R, Cao, J and Pain, A (2016). Genome-scale comparison of expanded gene families in Plasmodium ovale wallikeri and Plasmodium ovale curtisi with Plasmodium malariae and with other Plasmodium species. [Data Collection]. International Journal for Parasitology. https://doi.org/10.1016/j.ijpara.2016.05.009.

Moradigaravand, D, Martin, V, Peacock, SJ and Parkhill, J (2016). Files for "Evolution and epidemiology of multidrug resistant Klebsiella pneumoniae in the UK and Ireland". [Data Collection]. Mendeley Data. https://doi.org/10.17632/xfw8n3wzs5.1

Tientcheu, L, Haks, MC, Agbla, S, Sutherland, J, Adetifa, I, Donkor, S, Quinten, E, Daramy, M, Antonio, M, Kampmann, B, Ottenhoff, THM, Dockrell, H and Ota, MO (2016). Host Immune Responses Differ between M. africanum- and M. tuberculosis-Infected Patients following Standard Anti-tuberculosis Treatment. [Data Collection]. PLoS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0004701.s005

Tsuboi, T, Grigg, M, Barber, BE, Marfurt, J, Imwong, M, William, T, Bird, E, Piera, KA, Aziz, A, Boonyuen, U, Drakeley, C, Cox, J, White, NJ, Cheng, Q, Yeo, TW, Auburn, S and Anstey, NM (2016). P. knowlesi DHFR sequence data. [Data Collection]. PLoS One. https://doi.org/10.1371/journal.pone.0149519.s001

Busana, M, De Stavola, B, Sovio, U, Li, J, Moss, S, Humphreys, K and dos Santos Silva, I (2016). Assessing within-woman changes in mammographic density: a comparison of fully versus semi-automated area-based approaches. [Data Collection]. Cancer Causes and Control. https://doi.org/10.1007/s10552-016-0722-9

Brodrick, HJ, Raven, KE, Harrison, EM, Blane, B, Reuter, S, Török, ME, Parkhill, J and Peacock, S (2016). Whole-genome sequencing reveals transmission of vancomycin-resistant Enterococcus faecium in a healthcare network. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.3641945_D1.v1

Coker, OO, Chaiprasert, A, Ngamphiw, C, Tongsima, S, Regmi, SM, Clark, T, Ong, RTH, Teo, Y, Prammananan, T and Palittapongarnpim, P (2016). Mycobacterium tuberculosis Nonthaburi genotype raw reads. [Data Collection]. National Center for Biotechnology Information. https://www.ncbi.nlm.nih.gov/sra/SRX1094545

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