Klebsiella ecology and genome plasticity compared to E. coli and Gram negative ESKAPE pathogens
Holt, KE
and Wyres, K
(2018).
Klebsiella ecology and genome plasticity compared to E. coli and Gram negative ESKAPE pathogens.
[Dataset].
University of Melbourne, Australia.
https://doi.org/10.4225/49/5ac3670f83717
and Wyres, K
(2018).
Klebsiella ecology and genome plasticity compared to E. coli and Gram negative ESKAPE pathogens.
[Dataset].
University of Melbourne, Australia.
https://doi.org/10.4225/49/5ac3670f83717
This collection contains: (1) R code to parse data downloaded from NCBI to generate plots of genome size, genewise G+C content, AMR gene load and plasmid load for Gram negative opportunistic pathogens K. pneumoniae, E. coli, E. cloaceae, P. aeruginosa and A. baumannii. and (2) Results of querying the IMNGS 16S database (imngs.org) for the above species, and R code to plot the frequency of detection of each species in samples of different source types.
Keywords
Klebsiella; ESKAPE pathogens; E. coli; Plasmids; Antimicrobial resistance| Item Type | Dataset |
|---|---|
| Resource Type |
Resource Type Resource Description Dataset Quantitative |
| Capture method | Experiment: Laboratory |
| Date | 8 April 2018 |
| Language(s) of written materials | English |
| Creator(s) |
Holt, KE and Wyres, K
|
| LSHTM Faculty/Department | Faculty of Infectious and Tropical Diseases > Dept of Pathogen Molecular Biology (-2019) |
| Participating Institutions | University of Melbourne, Parkville VIC 3010, Australia |
| Date Deposited | 09 Jan 2019 10:49 |
| Last Modified | 17 Mar 2026 11:52 |
| Publisher | University of Melbourne |
No files available. Please consult associated links.
