Data Creators(s) Item Type No Grouping

A

MBIRA - Mortality from Bacterial Infections Resistant to Antibiotics study - underlying data. (2023) Aiken, Alex, Rehman, Andrea M. grid_on

Population-based monitoring of HIV drug resistance early warning indicators in Uganda: A nationally representative survey following revised WHO recommendations: S1 Data. (2020) Asio, Juliet, Watera, Christine, Namuwenge, Norah, Kirungi, Wilford, Musinguzi, Joshua, Mugagga, Kaggwa, Busobozi, Ronald, Tusiime, Bridget Jolly, Lutalo, Tom, Mbidde, Edward Katongole, Kaleebu, Pontiano

B

Genomic Characterisation of Invasive Non-Typhoidal Salmonella enterica Subspecies enterica Serovar Bovismorbificans Isolates from Malawi. (2013) Bronowski, Christina, Fookes, Maria C., Gilderthorp, Ruth, Ashelford, Kevin E., Harris, Simon R., Phiri, Amos, Hall, Neil, Gordon, Melita A., Wain, John, Hart, Charles A., Wigley, Paul, Thomson, Nicholas R., Winstanley, Craig

Data extraction results for a scoping review on AMR in food crops. (2024) Brunn, Ariel, Waage, Jeff description

C

Attitudes and Behaviours to Antimicrobial Prescribing following introduction of a Smartphone App. (2016) Cameron, D William, Panesar, Preet, Jones, Alasdair, Aldous, Alicia, Kranzer, Katharina, Halpin, Eamus, Fifer, Helen, Macrae, Bruce, Curtis, Carmel, Pollara, Gabriele

typhoidgenomics/TyphiNET. (2023) Cerdeira, Louise, Dyson, Zoe Anne, Holt, Kathryn E.

amrnet/amrnet: AMRnet-v1.0. (2024) Cerdeira, Louise, Sharma, Vandana, Maranga, Mary, Carey, Megan, Dyson, Zoe Anne, Holt, Kathryn E.

D

Additional materials from The history, genome and biology of NCTC 30: a non-pandemic Vibrio cholerae isolate from World War One. (2019) Dorman, Matthew J, Kane, Leanne, Domman, Daryl, Turnbull, Jake D, Cormie, Claire, Fazal, Mohammed-Abbas, Goulding, David A, Russell, Julie E, Alexander, Sarah, Thomson, Nicholas R.

Accession numbers and data for S. Typhi sequences used in this study. (2022) Dyson, Zoe Anne, Malau, Elisheba, Horwood, Paul F, Ford, Rebecca, Siba, Valentine, Yoannes, Mition, Pomat, William, Passey, Megan, Judd, Louise M, Ingle, Danielle J, Williamson, Deborah A, Dougan, Gordon, Greenhill, Andrew R, Holt, Kathryn E

Excluded repeat and phage regions in PNG MDUST348 2.1.7.2 completed reference sequence. (2022) Dyson, Zoe Anne, Malau, Elisheba, Horwood, Paul F, Ford, Rebecca, Siba, Valentine, Yoannes, Mition, Pomat, William, Passey, Megan, Judd, Louise M, Ingle, Danielle J, Williamson, Deborah A, Dougan, Gordon, Greenhill, Andrew R, Holt, Kathryn E

Outgroups used for phylogenetic tree rooting. (2022) Dyson, Zoe Anne, Malau, Elisheba, Horwood, Paul F, Ford, Rebecca, Siba, Valentine, Yoannes, Mition, Pomat, William, Passey, Megan, Judd, Louise M, Ingle, Danielle J, Williamson, Deborah A, Dougan, Gordon, Greenhill, Andrew R, Holt, Kathryn E

E

Trescovia/AHHME. (2023) Emes, Eve Tresco, Naylor, Nichola

Comparative fitness analysis of D-cycloserine resistant mutants reveals both fitness-neutral and high-fitness cost genotypes. (2019) Evangelopoulos, Dimitrios, Prosser, Gareth A., Rodgers, Angela, Dagg, Belinda M., Khatri, Bhagwati, Ho, Mei Mei, Gutierrez, Maximiliano G., Cortes, Teresa

G

Profile of the organisms selected for sequencing. (2021) Guevara, Paula Diaz, Maes, Mailis, Thanh, Duy Pham, Duarte, Carolina, Rodriguez, Edna Catering, Montaño, Lucy Angeline, Dan, Thanh Ho Ngoc, Nguyen, To Nguyen Thi, Carey, Megan E, Campos, Josefina, Chinen, Isabel, Perez, Enrique, Baker, Stephen

H

typhoidgenomics/genotyphi. (2024) Holt, Kathryn E., Dyson, Zoe Anne, Hawkey, Jane, flashton2003

interpretAMR/AMRrules. (2024) Holt, Kathryn E., Hawkey, Jane

Klebsiella ecology and genome plasticity compared to E. coli and Gram negative ESKAPE pathogens. (2018) Holt, Kathryn E., Wyres, Kelly

K

vaccine-impact/vaccine_amr. (2023) Kim, Chaelin, Abbas, Kaja M., vaccine-impact

gwenknight/empiricprescribing. (2019) Knight, Gwen

L

qleclerc/mrsa_phage_dynamics. (2022) Leclerc, Quentin J.

qleclerc/phage_antibiotic_dynamics. (2023) Leclerc, Quentin J.

AR.IA App all datasets. (2019) Leclerc, Quentin J., Naylor, Nichola R., Aiken, Alexander M., Coll, Francesc, Knight, Gwenan M.

AR.IA App drug breakdown. (2019) Leclerc, Quentin J., Naylor, Nichola R., Aiken, Alexander M., Coll, Francesc, Knight, Gwenan M.

AR.IA App drug breakdown (groups). (2019) Leclerc, Quentin J., Naylor, Nichola R., Aiken, Alexander M., Coll, Francesc, Knight, Gwenan M.

AR.IA App economic data. (2019) Leclerc, Quentin J., Naylor, Nichola R., Aiken, Alexander M., Coll, Francesc, Knight, Gwenan M.

AR.IA App species breakdown. (2019) Leclerc, Quentin J., Naylor, Nichola R., Aiken, Alexander M., Coll, Francesc, Knight, Gwenan M.

Campylobacter coli strain, whole genome shotgun sequencing project. (2022) Lehri, Burhan, Navoly, G, Willcocks, Sam, Huong, LQ, Stabler, Richard A

Comparing antimicrobial resistance prediction pipelines from bacterial whole genome sequencing data: An inter-laboratory study. (2019) London School of Hygiene & Tropical Medicine

Data for: "Genomic diversity and antimicrobial resistance in clinical Klebsiella pneumoniae isolates from tertiary hospitals in Southern Ghana". (2023) London School of Hygiene & Tropical Medicine

Model S1 - An Economic Evaluation of Home Management of Malaria in Uganda: An Interactive Markov Model. (2010) Lubell, Yoel, Mills, Anne, Whitty, Christopher J.M., Staedke, Sarah G. description

M

Assessment of antimalarial drug resistant markers in asymptomatic Plasmodium falciparum infections after 4 years of indoor residual spraying in Northern Ghana. S1 Data. (2020) Myers-Hansen, James L., Abuaku, Benjamin, Oyebola, Muyiwa K., Mensah, Benedicta A., Ahorlu, Collins, Wilson, Michael D., Awandare, Gordon, Koram, Kwadwo A., Ngwa, Alfred Amambua, Ghansah, Anita

N

Experimental hut data. (2016) Ngufor, Corine, Critchley, Jessica, Fagbohoun, Josias, N'guessan, Raphael, Todjinou, Damien, Rowland, Mark grid_on

O

Evaluation of the InTray and Compact Dry culture systems for the diagnosis of urinary tract infections - ARGUS study dataset. (2020) Olaru, Ioana Diana html

ARGUS clinical and bacteriological outcomes dataset. (2021) Olaru, Ioana-Diana description

P

Additional file 1 of Impact of azithromycin mass drug administration on the antibiotic-resistant gut microbiome in children: a randomized, controlled trial. (2022) Pickering, Harry, Hart, John D., Burr, Sarah, Stabler, Richard, Maleta, Ken, Kalua, Khumbo, Bailey, Robin L., Holland, Martin J.

R

Population structure and antimicrobial resistance patterns of Salmonella Typhi isolates in urban Dhaka, Bangladesh from 2004 to 2016. (2020) Rahman, Sadia Isfat Ara, Dyson, Zoe A., Klemm, Elizabeth J., Khanam, Farhana, Holt, Kathryn E., Chowdhury, Emran Kabir, Dougan, Gordon, Qadri, Firdausi

S

Dataset for "Genomic characterisation of Salmonella enterica serovar Wangata isolates obtained from different sources reveals low genomic diversity". (2020) Simpson, Kelly M J, Mor, Siobhan M, Ward, Michael P, Collins, Julie, Flint, James, Hill-Cawthorne, Grant A, El Ghany, Moataz Abd

AntonS-bio/entropy. (2022) Spadar, Anton

T

S1 Data for: "Is There a Need for Viral Load Testing to Assess Treatment Failure in HIV-Infected Patients Who Are about to Change to Tenofovir-Based First-Line Antiretroviral Therapy? Programmatic Findings from Myanmar". (2016) Thiha, Nay, Chinnakali, Palanivel, Harries, Anthony D., Shwe, Myint, Balathandan, Thanumalaya Perumal, Thein Than Tun, Sai, Das, Mrinalini, Tin, Htay Htay, Yi, Yi, Babin, François Xavier, Lwin, Thi Thi, Clevenbergh, Philippe Albert

karatsang/rulesbased_logisticregression. (2020) Tsang, Kara K

U

Exploring the oxidative, antimicrobial and genomic properties of Campylobacter jejuni strains isolated from poultry. (2018) Ugarte-Ruiz, Maria, Domínguez, Lucas, Corcionivoschi, Nicolae, Wren, Brendan W., Dorrell, Nick, Gundogdu, Ozan

V

R code: why sensitive bacteria are resistant to hospital infection control. (2017) van Kleef, Esther, Luangasanatip, Nantasit, Bonten, Marc JM, Cooper, Ben S

W

gwenknight/ecdc_data_age_sex. (2024) Waterlow, Naomi, Knight, Gwen