Data extraction results for a scoping review on AMR in food crops

Brunn, A

and Waage, J (2024). Data extraction results for a scoping review on AMR in food crops. [Dataset]. London School of Hygiene & Tropical Medicine, London, United Kingdom. 10.17037/DATA.00003087.

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Data extracted from published peer-reviewed and grey literature that summarise antimicrobial sensitivity testing data and sensitivity results.

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Researchers wishing to access the dataset are invited to complete the request form.

Keywords

Food crops; Antimicrobial resistance; Agriculture; Environmental sampling

Item Type	Dataset
Resource Type	Resource Type Resource Description Dataset Quantitative
Description of data capture	Data extraction from peer-reviewed or grey literature published online obtained through bibliographic search methods. A data extraction template in Microsoft Excel was developed with input from members of the advisory group. Studies underwent data extraction by a single person, this data was validated using a cross-over method to identify missed information or disagreements, which were subsequently resolved by consensus or a third person. Data points include study characteristics, study methods and samples, antimicrobial susceptibility test results and antimicrobial resistance genes that have been reported by authors relevant to the food crop value chain. Data extraction results are stratified within the table initially by sample type, then by microbial species, and finally by (phenotypic) antimicrobial sensitivity results.
Capture method	Compilation/Synthesis, Aggregation
Collection Period	From To January 2020 July 2020
Date	16 September 2024
Language(s) of written materials	English, Swahili
Creator(s)	Brunn, A and Waage, J
Associated roles	Kadri-Alabi, Z (Data Collector)
LSHTM Faculty/Department	Faculty of Epidemiology and Population Health > Dept of Population Health (2012- ) Faculty of Infectious and Tropical Diseases > Dept of Disease Control
Participating Institutions	London School of Hygiene & Tropical Medicine, London, United Kingdom
Funders	Project Funder Grant Number Funder URI AMR in Food Crops Scoping Study Consortium of International Agricultural Research Centers ITDCZL8410 http://dx.doi.org/10.13039/501100015815
Date Deposited	16 Sep 2024 13:09
Last Modified	29 Jul 2025 12:44
Publisher	London School of Hygiene & Tropical Medicine

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Consortium of International Agricultural Research Centers

Data / Code

ScR_AMR_Crops_data_extraction.csv

subject: Data
lock: Restricted to Request access for all
copyright: Available under Data Sharing Agreement
info: Full data extraction results for ScR AMR crops - final
description: text/plain
folder_info: 51B

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Documentation

Data_extraction_guidance.pdf

subject: Documentation
: Available under Creative Commons: Attribution 4.0
info: Information pertaining to the methods of extraction of data from studies
picture_as_pdf: application/pdf
folder_info: 328kB

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ScR_AMR_Crops_data_codebook.html

subject: Documentation
: Available under Creative Commons: Attribution 4.0
info: Codebook for ScR AMR crops spreadsheet
html: text/html
folder_info: 22kB

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3087-UserGuide.html

subject: Documentation
: Available under Creative Commons: Attribution 4.0
info: User guide for ScR AMR crops spreadsheet
html: text/html
folder_info: 5kB

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