Coll, F. 2022. francesccoll/powerbacgwas. [Online]. Github. Available from: https://github.com/francesccoll/powerbacgwas/
Coll, F. francesccoll/powerbacgwas [Internet]. Github; 2022. Available from: https://github.com/francesccoll/powerbacgwas/
Coll, F (2022). francesccoll/powerbacgwas. [Data Collection]. Github. https://github.com/francesccoll/powerbacgwas/
Alternative Title
PowerBacGWAS: Power calculations for Bacterial GWAS
Description
PowerBacGWAS is a computational pipeline to conduct power calculations for bacterial GWAS. It uses existing collections of bacterial genomes to establish the sample sizes required to detect statistical significant associations for a given genotype frequency and effect size (or phenotype heritability). It supports a range of genomic variation including SNPs, indels, and variation in gene content (pan-genome). Here, we make the code available, and provide installation and usage instructions. PowerBacGWAS can be applied to any bacterial population Here we applied it to three different bacterial species: Enterococcus faecium, Klebsiella pneumoniae, and Mycobacterium tuberculosis.
| Data capture method | Other |
|---|---|
| Date (Date published in a 3rd party system) | 2 February 2022 |
| Language(s) of written materials | English |
| Data Creators | Coll, F |
|---|---|
| LSHTM Faculty/Department | Faculty of Infectious and Tropical Diseases > Department of Infection Biology |
| Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom |
| Date Deposited | 31 Mar 2022 13:40 |
|---|---|
| Last Modified | 16 Aug 2022 13:23 |
| Publisher | Github |
