Russell, TW
and Kucharski, AJ
(2024).
thimotei/legacy_nAb_kinetics.
[Dataset].
Github.
https://github.com/thimotei/legacy_nAb_kinetics/
and Kucharski, AJ
(2024).
thimotei/legacy_nAb_kinetics.
[Dataset].
Github.
https://github.com/thimotei/legacy_nAb_kinetics/
Code and data for the underlying model outlined in the "Real-time estimation of immunological responses against emerging SARS-CoV-2 variants". The underlying antibody kinetics model is written in Stan. We use cmdstan, called from R using the cmdstanr package. We use data.table for our data manipulation throughout and ggplot2 for all plots. Lastly, for extracting the posterior samples in a user-friendly and simple manner, we ubiquitously use the tidybayes package.
Keywords
SARS-CoV-2| Item Type | Dataset |
|---|---|
| Resource Type |
Resource Type Resource Description Software R script |
| Capture method | Other |
| Date | 18 July 2024 |
| Language(s) of written materials | English |
| Creator(s) |
Russell, TW and Kucharski, AJ
|
| LSHTM Faculty/Department | Faculty of Epidemiology and Population Health > Dept of Infectious Disease Epidemiology & Dynamics (2023-) |
| Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom |
| Date Deposited | 29 Oct 2024 16:13 |
| Last Modified | 29 Oct 2024 16:13 |
| Publisher | Github |
No files available. Please consult associated links.
