Items where Data Creator is Jombart, Thibaut"
Number of items: 22.
23 January 2014
  • Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data. (2014) Jombart, Thibaut, Cori, Anne, Didelot, Xavier, Cauchemez, Simon, Fraser, Christophe, Ferguson, Neil
    • 18 January 2016
  • The Ecological Dynamics of Fecal Contamination and Salmonella Typhi and Salmonella Paratyphi A in Municipal Kathmandu Drinking Water. S2 Dataset. (2016) Karkey, Abhilasha, Jombart, Thibaut, Walker, Alan W., Thompson, Corinne N., Torres, Andres, Dongol, Sabina, Tran Vu Thieu, Nga, Pham Thanh, Duy, Tran Thi Ngoc, Dung, Voong Vinh, Phat, Singer, Andrew C., Parkhill, Julian, Thwaites, Guy, Basnyat, Buddha, Ferguson, Neil, Baker, Stephen
    • 14 May 2018
  • treespace: exploration of landscapes of phylogenetic trees. (2018) Jombart, Thibaut, Kendall, Michelle, Almagro-Garcia, Jacob, Colijn, Caroline
    • 30 November 2018
  • outbreaker2: Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data. (2018) Jombart, Thibaut, Campbell, Finlay, Fitzjohn, Richard
    • 12 July 2019
  • mrc-ide/EpiEstim: 2.2-3. (2019) Cori, Anne, Kamvar, Zhian N., Stockwin, Jake, Jombart, Thibaut, Thompson, Robin, Dahlqwist, Elisabeth
    • 29 July 2019
  • jstockwin/EpiEstimApp: v1.0.0. (2019) Stockwin, Jake, Thompson, Robin, Cori, Anne, Jombart, Thibaut, Kamvar, Zhian N., FitzJohn, Rich
    • 6 February 2020
  • pegas: Population and Evolutionary Genetics Analysis System. (2020) Paradis, Emmanuel, Kamvar, Zhian N., Jombart, Thibaut, Brian, Knaus, Frederic, Michaud
    • 3 March 2020
  • Inferring COVID-19 cases from deaths of confirmed cases. (2020) Jombart, Thibaut, Abbott, Sam, Gimma, Amy, Zandvoort, Kevin, Clifford, Samuel, Jarvis, Christopher, Russell, Timothy, Funk, Sebastian, Gibbs, Hamish, Eggo, Rosalind M., Kucharski, Adam J., CMMID COVID-19 Working Group, Edmunds, W. John
    • 18 March 2020
  • Age-structured SEIR model for COVID-19 outbreak in Wuhan, China. (2020) Prem, Kiesha, Liu, Yang, Russell, Timothy W, Kucharski, Adam J, Eggo, Rosalind M, Davies, Nicholas G, Jit, Mark, Klepac, Petra, Flasche, Stefan, Clifford, Samuel, Pearson, Carl A B, Munday, James D, Abbott, Sam, Gibbs, Hamish, Rosello, Alicia, Quilty, Billy J, Jombart, Thibaut, Sun, Fiona, Diamond, Charlie, Gimma, Amy, Van zandvoort, Kevin, Funk, Sebastian, Jarvis, Christopher I, Edmunds, W John, Bosse, Nikos I, Hellewell, Joel
    • 30 March 2020
  • Inferring COVID-19 cases from recent death. (2020) Jombart, Thibaut, Abbott, Sam, Gimma, Amy, Van zandvoort, Kevin, Jarvis, Christopher
    • 9 April 2020
  • thibautjombart/covid19_bed_occupancy: Second major release. (2020) Jombart, Thibaut, Clifford, Samuel, Pearson, Carl A. B. Pearson, Rees, Eleanor, Nightingale, Emily, Procter, Simon, Knight, Gwen
    • 20 May 2020
  • adegenet: Exploratory Analysis of Genetic and Genomic Data. (2020) Jombart, Thibaut, Kamvar, Zhian N., Collins, Caitlin, Luštrik, Roman, Beugin, Marie-Pauline, Knaus, Brian J, Solymos, Peter, Mikryukov, Vladimir, Schliep, Klaus, Maié, Tiago, Morkovsky, Libor, Ahmed, Ismail, Cori, Anne, Calboli, Federico, Ewing, RJ, Michaud, Frédéric, DeCamp, Rebecca, Courtiol, Alexandre
    • 10 June 2020
  • trendbreaker 0.1.0: Detect Changes in Temporal Trends. (2020) Jombart, Thibaut, Schumacher, Dirk
    • 30 July 2020
  • projections: Project Future Case Incidence. (2020) Jombart, Thibaut, Nouvellet, Pierre, Bhatia, Sangeeta, Kamvar, Zhian N., Taylor, Tim, Ghozzi, Stephane
    • 3 September 2020
  • Additional file 2 of COVID-19 length of hospital stay: a systematic review and data synthesis. (2020) Rees, Eleanor M., Nightingale, Emily S., Jafari, Yalda, Waterlow, Naomi R., Clifford, Samuel, B. Pearson, Carl A., CMMID Working Group, Jombart, Thibaut, Procter, Simon R., Knight, Gwenan M.
    • 11 September 2021
  • o2geosocial: Reconstruction of Transmission Chains from Surveillance Data. (2021) Robert, Alexis, Funk, Sebastian, Kucharski, Adam J., Jombart, Thibaut
    • 1 December 2021
  • Analysis of changes in worldwide routine immunisation coverage in 2020. (2021) Evans, Bethany, Jombart, Thibaut
    • 14 December 2021
  • jarvisc1/2020-reporting. (2021) Jarvis, Christopher I., Jombart, Thibaut
    • 9 May 2022
  • epiverse-trace/linelist. (2022) Jombart, Thibaut
    • 8 September 2022
  • epiverse-trace/blueprints: 0.0.2. (2022) Jombart, Thibaut, actions-user, Gruson, Hugo, Pavlich-Mariscal, Jaime
    • 9 April 2024
  • finalsize: Calculate the Final Size of an Epidemic. (2024) Gupte, Pratik, Van Leeuwen, Edwin, Kucharski, Adam, Eggo, Rosalind M., Gruson, Hugo, Jombart, Thibaut, Valle Campos, Andree, Lambert, Joshua W.
    • 17 June 2024
  • cleanepi: Clean and Standardize Epidemiological Data. (2024) Mané, Karim, Jombart, Thibaut, Bah, Bubacarr, Ahadzie, Bankolé, Mohammed, Nuredin, Degoot, Abdoelnaser M., Gruson, Hugo, Gupte, Pratik R., Azam, James M., Lambert, Joshua W., Hartgerink, Chris