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Number of items at this level: 184.

Project

Day, LT, Ruysen, H, Gordeev, VS, Gore-langton, GR, Boggs, D, Cousens, S, Moxon, SG, Blencowe, H, Baschieri, A, Rahman, AE, Tahsina, T, Zaman, SB, Hossain, T, Rahman, QS, Ameen, S, Arifeen, SE, KC, A, Shrestha, SK, KC, NP, Singh, D, Jha, AK, Jha, B, Rana, N, Basnet, O, Joshi, E, Paudel, A, Shrestha, PR, Jha, D, Bastola, RC, Ghimire, JJ, Paudel, R, Salim, N, Shamba, D, Manji, K, Shabani, J, Shirima, K, Mkopi, N, Mrisho, M, Manzi, F, Jaribu, J, Kija, E, Assenga, E, Kisenge, R, Pembe, A and Lawn, JE Every Newborn Birth Indicator Research Tracking in Hospitals (EN-BIRTH) - Supplementary Materials. [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000955.

Mansfield, KE, Douglas, IJ, Nitsch, D, Thomas, SL, Smeeth, L and Tomlinson, LA Code lists for: "Acute kidney injury and infections in patients taking antihypertensive drugs: a self-controlled case series analysis". [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.211.

Weiss, H Menstrual Hygiene and Safe Male Circumcision Promotion in Ugandan Schools (MENISCUS). [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom, London, United Kingdom. https://doi.org/10.17037/DATA.274.

XPHACTOR study XPHACTOR datasets. [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Data Collection

Abbas, KM, Kang, GJ, Chen, D, Werre, SR and Marathe, A (2018). Repository for manuscript: "Demographics, perceptions, and socio-economic factors affecting influenza vaccination among adults in the United States". [Data Collection]. Github. https://github.com/gloriakang/influenza-vaccination-adults

Andreu, N, Phelan, J, de Sessions, PF, Cliff, JM, Clark, T and Hibberd, M (2017). Primary macrophages and J774 cells respond differently to infection with Mycobacterium tuberculosis. [Data Collection]. Gene Expression Omnibus. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE88801

Angkurawaranon, C, Nitsch, D, Larke, N, Rehman, AM, Smeeth, L and Addo, J (2016). Ecological Study of HIV Infection and Hypertension in Sub-Saharan Africa: Is There a Double Burden of Disease? [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0166375.

Ansari, HR, Templeton, TJ, Subudhi, AK, Ramaprasad, A, Tang, J, Lu, F, Naeem, R, Hashish, Y, Oguike, MC, Benavente, ED, Clark, TG, Sutherland, CJ, Barnwell, JW, Culleton, R, Cao, J and Pain, A (2016). Genome-scale comparison of expanded gene families in Plasmodium ovale wallikeri and Plasmodium ovale curtisi with Plasmodium malariae and with other Plasmodium species. [Data Collection]. International Journal for Parasitology. https://doi.org/10.1016/j.ijpara.2016.05.009.

Athrey, G, Hodges, TK, Reddy, MR, Overgaard, H, Matias, A, Ridl, FC, Kleinschmidt, I, Caccone, A and Slotman, MA (2013). Data from: Effective population size of malaria mosquitoes: large impact of vector control. [Data Collection]. Dryad digital repository. https://doi.org/10.5061/dryad.1rf75.

Atkins, K, Vanhoek, A, Watson, C, Baguelin, M, Choga, L, Patel, A, Raj, T, Jit, M and Griffiths, U (2015). Data from: Seasonal influenza vaccination delivery through community pharmacists in England: evaluation of the London pilot. [Data Collection]. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.rn931

Bandason, T, Dauya, E, Dakshina, S, McHugh, G, Chonzi, P, Munyati, S, Weiss, HA, Simms, V, Kranzer, K and Ferrand, RA (2018). Screening tool to identify adolescents living with HIV in a community setting in Zimbabwe: A validation study. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0204891.s001.

Baschieri, A (2016). Unintended childbearing and family welfare in rural Malawi. [Data Collection]. UK Data Service, Colchester, Essex, United Kingdom. http://dx.doi.org/10.5255/UKDA-SN-850869

Benavente, E, Coll, F, Furnham, N, Mcnerney, R, Glynn, J, Campino, S, Pain, A, Mohareb, FR and Clark, T (2015). PhyloTrack. [Data Collection]. SourceForge. https://doi.org/10.17037/DATA.82.

Blencowe, H (2017). Global and regional prevalence of neural tube defects estimates in 2015: Data sources, methods and results. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.264.

Blencowe, H, Cousens, S, Bianchi jassir, F, Say, L, Chou, D, Mathers, C, Hogan, D, Shiekh, S, Qureshi, Z, You, D and Lawn, J (2015). National, regional, and worldwide estimates of stillbirth rates in 2015, with trends from 2000: a systematic analysis. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.25.

Blencowe, H, Krasevec, J, de Onis, M, Black, RE, An, X, Stevens, GA, Borghi, E, Hayashi, C, Estevez, D, Cegolon, L, Shiekh, S, Ponce Hardy, V, Lawn, JE and Cousens, S (2019). Supporting information for National, regional, and worldwide estimates of low birthweight rates in 2015, with trends from 2000: a systematic analysis. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001090.

Bott, S, Neuman, M, Helleringer, S, Desclaux, A, Asmar, KE, Obermeyer, CM and MATCH Study Group (2014). Data for: "Rewards and challenges of providing HIV testing and counselling services: health worker perspectives from Burkina Faso, Kenya and Uganda". [Data Collection]. Health policy and planning. http://heapol.oxfordjournals.org/content/suppl/2014/08/06/czu100.DC1

Bower, H and Glynn, J (2017). Data from: A systematic review and meta-analysis of seroprevalence surveys of ebolavirus infection. [Data Collection]. Dryad Digital Repository. https://doi.org/10.5061/dryad.gn95r.2.

Burr, SE, Camara, B, Oluwalana, C, Bojang, E, Bottomley, C, Bojang, A, Bailey, RL, D’alessandro, U and Roca, A (2017). Data for: "Does azithromycin given to women in labour decrease ocular bacterial infection in neonates? A double-blind, randomized trial". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Cairns, M, Woukeu, A and Tagbor, H (2015). Screening and treatment of malaria in pregnancy in West Africa. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.2.

Camacho, A, Kucharski, A, Funk, S, Breman, J, Piot, P and Edmunds, J (2014). Potential for large outbreaks of Ebola virus disease: Supplementary Data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.27.

Cameron, DW, Panesar, P, Jones, A, Aldous, A, Kranzer, K, Halpin, E, Fifer, H, Macrae, B, Curtis, C and Pollara, G (2016). Attitudes and Behaviours to Antimicrobial Prescribing following introduction of a Smartphone App. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0154202.

Campbell, O, Cegolon, L, Macleod, D and Benova, L (2016). Length of Stay After Childbirth in 92 Countries and Associated Factors in 30 Low- and Middle-Income Countries: Compilation of Reported Data and a Cross-sectional Analysis from Nationally Representative Surveys. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pmed.1001972.

Chandler, C, Webb, EL, Maiteki-Sebuguzi, C, Nayiga, S, Nabirye, C, Diliberto, D, Ssemmondo, E, Dorsey, G, Kamya, MR and Staedke, SG (2017). The impact of an intervention to introduce malaria rapid diagnostic tests on fever case management in a high transmission setting in Uganda: A mixed-methods cluster-randomized trial (PRIME). [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0170998.

Chibanda, D, Munetsi, E, Weiss, H, Simms, V, Dzapasi, L, Chapoterera, G, Goba, N, Gumunyu, T, Verhey, R, Rusakaniko, S, Abas, M, Araya, R, Gibson, L and Bere, C (2015). Friendship Bench trial: lay worker training in problem-solving therapy to reduce symptoms of common mental disorders. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.201.

Chihana, M and Crampin, AC (2015). Karonga HDSS INDEPTH Core Dataset 2003 - 2011. [Data Collection]. INDEPTH Network. http://dx.doi.org/10.7796/INDEPTH.MW011.CMD2011.v4

Chihana, M and Crampin, AC (2015). Malawi - Karonga HDSS INDEPTH Core Dataset 2003 - 2012 Release 2015. [Data Collection]. INDEPTH Network. http://dx.doi.org/10.7796/INDEPTH.MW011.CMD2012.v1

Choi, YH, Campbell, H, Amirthalingam, G, Van Hoek, AJ and Miller, E (2016). Investigating the pertussis resurgence in England and Wales, and options for future control. [Data Collection]. BMC Medicine. https://doi.org/10.1186/s12916-016-0665-8.

Choko, A, Corbett, E and Fielding, K (2018). Baseline and primary data for the partner-provided HIV self-testing and linkage (PASTAL) adaptive multi-arm multi-stage cluster randomized trial in Blantyre, Malawi. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000923.

Choko, A, Webb, E and Corbett, E (2016). Initial Accuracy of HIV Rapid Test Kits Stored in Suboptimal Conditions and Validity of Delayed Reading of Oral Fluid Tests. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.105.

Choko, A, Webb, E and Corbett, L (2015). Uptake, accuracy, safety and linkage into care over two years of promoting annual self-testing for HIV in Blantyre, Malawi: a community-based prospective study. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.7.

Coker, OO, Chaiprasert, A, Ngamphiw, C, Tongsima, S, Regmi, SM, Clark, T, Ong, RTH, Teo, Y, Prammananan, T and Palittapongarnpim, P (2016). Mycobacterium tuberculosis Nonthaburi genotype raw reads. [Data Collection]. National Center for Biotechnology Information. https://www.ncbi.nlm.nih.gov/

Coll, F, Mallard, K, Preston, M, Bentley, S, Parkhill, J, Mcnerney, R, Martin, N and Clark, T (2012). In Silico Spoligotyping. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. http://pathogenseq.lshtm.ac.uk/

Coll, F, Mcnerney, R, Guerra-Assunção, JA, Glynn, JR, Perdigão, J, Viveiros, M, Portugal, I, Pain, A, Martin, N and Clark, TG (2014). Data for: "A robust SNP barcode for typing Mycobacterium tuberculosis complex strains". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. http://pathogenseq.lshtm.ac.uk/downloads/Coll2014_LinSpeSNPs_final.csv

Coll, F, Mcnerney, R, Preston, MD, Guerra-assunção, JA, Warry, A, Hill-Cawthorne, G, Mallard, K, Nair, M, Miranda, A, Alves, A, Perdigão, J, Viveiros, M, Portugal, I, Hasan, Z, Hasan, R, Glynn, J, Martin, N, Pain, A and Clark, T (2015). TB Profiler. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. http://tbdr.lshtm.ac.uk/

Coll, F, Preston, M, Guerra-Assunção, JA, Hill-Cawthorn, G, Harris, D, Perdigão, J, Viveiros, M, Portugal, I, Drobniewski, F, Gagneux, S, Glynn, JR, Pain, A, Parkhill, J, McNerney, R, Martin, N and Clark, T (2014). PolyTB: A web-based resource designed to explore Mycobacterium tuberculosis complex (MTBC) genomic variation at a global scale. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. http://pathogenseq.lshtm.ac.uk/#tuberculosis

Cresswell, J, Drabo, S, Filippi, V, Ganaba, R, Guissou, R, Ilboudo, P, Ouedrago, D, Powell-Jackson, T, Somé, H, Soubeiga, A, Storeng, K and Yaogo, M (2015). Productivity, family planning and reproductive health in Burkina Faso: the PopDev study. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.13.

Cresswell, J, Filippi, V, Ganaba, R, Diallo, HA, Sarrassat, S and Somé, H (2018). Alive & Thrive Evaluation in Burkina Faso: endline data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.280.

Cresswell, J, Ganaba, R, Sarrassat, S, Cousens, S, Somé, H, Diallo, AH and Filippi, V (2017). Alive & Thrive Evaluation in Burkina Faso: baseline data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.173.

Daniele, M, Ouedraogo, D, Some, H, Ganaba, R, Sarrassat, S, Cousens, S, Rossier, C and Filippi, V (2019). Dataset for "Involving male partners in maternity care in Burkina Faso: a randomized controlled trial". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001021.

Davey, C, Aiken, A, Hayes, R and Hargreaves, J (2015). Replication and re-analysis of a Kenyan stepped-wedge trial – Analysis files. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.8.

Day, LT, Ruysen, H, Gordeev, VS, Gore-langton, GR, Boggs, D, Cousens, S, Moxon, SG, Blencowe, H, Baschieri, A, Rahman, AE, Tahsina, T, Zaman, SB, Hossain, T, Rahman, QS, Ameen, S, Arifeen, SE, KC, A, Shrestha, SK, KC, NP, Singh, D, Jha, AK, Jha, B, Rana, N, Basnet, O, Joshi, E, Paudel, A, Shrestha, PR, Jha, D, Bastola, RC, Ghimire, JJ, Paudel, R, Salim, N, Shamba, D, Manji, K, Shabani, J, Shirima, K, Mkopi, N, Mrisho, M, Manzi, F, Jaribu, J, Kija, E, Assenga, E, Kisenge, R, Pembe, A, Hanson, C, Mbaruku, G, Masanja, H and Lawn, JE (2018). EN-BIRTH Data Collection Tools. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000951.

Day, LT, Ruysen, H, Gordeev, VS, Gore-langton, GR, Boggs, D, Cousens, S, Moxon, SG, Blencowe, H, Baschieri, A, Rahman, AE, Tahsina, T, Zaman, SB, Hossain, T, Rahman, QS, Ameen, S, Arifeen, SE, KC, A, Shrestha, SK, KC, NP, Singh, D, Jha, AK, Jha, B, Rana, N, Basnet, O, Joshi, E, Paudel, A, Shrestha, PR, Jha, D, Bastola, RC, Ghimire, JJ, Paudel, R, Salim, N, Shamba, D, Manji, K, Shabani, J, Shirima, K, Mkopi, N, Mrisho, M, Manzi, F, Jaribu, J, Kija, E, Assenga, E, Kisenge, R, Pembe, A, Hanson, C, Mbaruku, G, Masanja, H and Lawn, JE (2018). EN-BIRTH Data Collector Training - Handbook and Manual. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000952.

Day, LT, Ruysen, H, Gordeev, VS, Gore-langton, GR, Boggs, D, Cousens, S, Moxon, SG, Blencowe, H, Baschieri, A, Rahman, AE, Tahsina, T, Zaman, SB, Hossain, T, Rahman, QS, Ameen, S, Arifeen, SE, KC, A, Shrestha, SK, KC, NP, Singh, D, Jha, AK, Jha, B, Rana, N, Basnet, O, Joshi, E, Paudel, A, Shrestha, PR, Jha, D, Bastola, RC, Ghimire, JJ, Paudel, R, Salim, N, Shamba, D, Manji, K, Shabani, J, Shirima, K, Mkopi, N, Mrisho, M, Manzi, F, Jaribu, J, Kija, E, Assenga, E, Kisenge, R, Pembe, A, Hanson, C, Mbaruku, G, Masanja, H and Lawn, JE (2018). EN-BIRTH Data Collector Training – Training Module material. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000954.

Day, LT, Ruysen, H, Gordeev, VS, Gore-langton, GR, Boggs, D, Cousens, S, Moxon, S, Blencowe, H, Baschieri, A, Rahman, AE, Tahsina, T, Zaman, SB, Hossain, T, Rahman, QS, Ameen, S, Arifeen, SE, KC, A, Shrestha, SK, KC, NP, Singh, D, Jha, AK, Jha, B, Rana, N, Basnet, O, Joshi, E, Paudel, A, Shrestha, PR, Jha, D, Bastola, RC, Ghimire, JJ, Paudel, R, Salim, N, Shamba, D, Manji, K, Shabani, J, Shirima, K, Mkopi, N, Mrisho, M, Manzi, F, Jaribu, J, Kija, E, Assenga, E, Kisenge, R, Pembe, A, Hanson, C, Mbaruku, G, Masanja, H and Lawn, JE (2018). EN-BIRTH Data Collector Training - Supporting Annexes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000953.

Dennis, M, Chelwa, N, Owolabi, O, Cresswell, J, Filippi, V and Campbell, O (2017). Zambia Signal Functions study 2016 dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.276.

Dennis, M, Radovich, E, Wong, K, Owolabi, O, Cavallaro, F, Mbizvo, MT, Binagwaho, A, Waiswa, P, Lynch, C and Benova, L (2017). Pathways to increased coverage: an analysis of time trends in contraceptive need and use among adolescents and young women in Kenya, Rwanda, Tanzania, and Uganda. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.3907207

Dhalla, K, Cousens, S, Bowman, R, Wood, M and Murdoch, I (2016). Is Beta Radiation Better than 5 Flurouracil as an Adjunct for Trabeculectomy Surgery When Combined with Cataract Surgery? A Randomised Controlled Trial. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0161674.

Diez Benavente, E, Florez de Sessions, P, Moon, RW, Holder, AA, Blackman, MJ, Roper, C, Drakeley, CJ, Pain, A, Sutherland, CJ, Hibberd, ML, Campino, S and Clark, TG (2017). Analysis of nuclear and organellar genomes of Plasmodium knowlesi in humans reveals ancient population structure and recent recombination among host-specific subpopulations. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pgen.1007008

Dodd, PJ, Looker, C, Plumb, ID, Bond, V, Schaap, A, Shanaube, K, Muyoyeta, M, Vynnycky, E, Godfrey-faussett, P, Corbett, E, Beyers, N, Ayles, H and White, R (2015). Age- and Sex-Specific Social Contact Patterns and Incidence of Mycobacterium tuberculosis Infection: Interview Questionnaire. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.35.

Doyle, AM, Floyd, S, Baisley, K, Orindi, B, Kwaro, D, Mthiyane, TN, Muuo, S, Shahmanesh, M, Ziraba, A and Birdthistle, I (2018). Who are the male sexual partners of adolescent girls and young women? Comparative analysis of population data in three settings prior to DREAMS roll-out. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0198783

Drabo, S, Kagambega, A, Keita, A, Kontiebo, S, Montel, L, Filippi, V, Soubeiga, A, Storeng, K, Da, S, Allahissem, C, Gali Gali, I and Yaogo, M (2015). Productivity, family planning and reproductive health in Burkina Faso: PopDev qualitative data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.19.

Dube, A and Crampin, AC (2016). Malawi - Karonga HDSS INDEPTH Core Dataset 2003 - 2014 (Release 2016). [Data Collection]. INDEPTH Data Repository. http://indepth-ishare.org/index.php/catalog/101/study-description

Dube, A and Crampin, AC (2017). Malawi - Karonga HDSS INDEPTH Core Dataset 2003-2015 (Release 2017). [Data Collection]. INDEPTH Data Repository. http://indepth-ishare.org/index.php/catalog/128

Eggo, RM (2018). Computer code of the coinfection model. [Data Collection]. PLOS Pathogens. https://doi.org/10.1371/journal.ppat.1006770.s004.

Falconer, J and Parajuli, A (2018). Draft search strategies for: "Novel strategies and approaches for testing populations at risk for sexually transmitted infections: A systematic review protocol". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001047.

Fielding, K, Lewis, J and Jiang, S (2013). Effectiveness of electronic reminders to improve medication adherence in tuberculosis patients: a cluster-randomised trial. [Data Collection]. London School of Hygiene & Tropical Medicine, London. https://doi.org/10.17037/DATA.4.

Filippi, V (2016). The effects of obstetric complications and their costs on the long-term economic and social well being of women and their families. [Data Collection]. UK Data Service, Colchester, Essex, United Kingdom. http://dx.doi.org/10.5255/UKDA-SN-852317

Finger, F, Funk, S, White, K, Siddiqui, MR, Edmunds, WJ and Kucharski, AJ (2019). Additional file 2: of Real-time analysis of the diphtheria outbreak in forcibly displaced Myanmar nationals in Bangladesh. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.7829816.v1.

Finger, F, Genolet, T, Mari, L, de Magny, GC, Manga, NM, Rinaldo, A and Bertuzzo, E (2016). Mobile phone data highlights the role of mass gatherings in the spreading of cholera outbreaks. [Data Collection]. Proceedings of the National Academy of Sciences of the United States of America. https://doi.org/10.1073/pnas.1522305113.

Floyd, S, Ayles, H, Schaap, A, Shanaube, K, MacLeod, D, Phiri, M, Griffith, S, Bock, P, Beyers, N, Fidler, S and Hayes, R (2018). Aggregate data for "Towards 90-90: Findings after two years of the HPTN 071 (PopART) cluster-randomized trial of a universal testing-and-treatment intervention in Zambia". [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0197904.s005

Foster, N, Hanifa, Y, Pillai, N, Roycent, T, Fielding, K, Vassall, A and Grant, AD (2018). XPHACTOR cross-sectional patient cost dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000791.

Francis, SC (2017). iGugu Main Study Data PLOS Medicine. [Data Collection]. INDEPTH Data Repository. https://doi.org/10.7796/iGUGU.MAIN.STUDY.DATA.PLOS.MEDICINE.v1

Francis, SC, Hou, Y, Baisley, K, Van de wijgert, J, Watson-Jones, D, Ao, TT, Herrera, C, Maganja, K, Andreasen, A, Coulton, GR, Hayes, RJ and Shattock, RJ (2015). Data for: "Immune activation in the female genital tract: Expression profiles of soluble proteins in women at high risk for HIV infection". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.104.

Funk, S (2018). Socialmixr: Social Mixing Matrices for Infectious Disease Modelling. [Data Collection]. The Comprehensive R Archive Network. https://CRAN.R-project.org/package=socialmixr

Glynn, JR, Bower, H, Houlihan, C, Oza, S, Checchi, F, Johnson, S, Turay, C, Sesay, D, Mansaray, SH, Kamara, O, Kamara, JA, Bangura, MS, Montesano, C, Dicks, S, Samuel, D, Tedder, R and Sebba, C (2017). Asymptomatic infection and family contact patterns in households of Ebola Virus Disease survivors, Sierra Leone 2015. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.41.

Gon, G (2018). Data for "HANDS project - Hand-hygiene of Attendants for Newborn Deliveries and Survival". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000778.

Hanifa, Y, Fielding, K, Chihota, VN, Adonis, L, Charalambous, S, Karstaedt, A, McCarthy, K, Nicol, MP, Ndlovu, NT, Sahid, F, Churchyard, G and Grant, AD (2016). Diagnostic Accuracy of Lateral Flow Urine LAM Assay for TB Screening of Adults with Advanced Immunosuppression Attending Routine HIV Care in South Africa. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0156866.

Hanifa, Y, Fielding, K, Grant, AD and Churchyard, GJ (2016). Data for: "The utility of repeat Xpert MTB/RIF testing to diagnose tuberculosis in HIV-positive adults with initial negative result". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.284.

Hanifa, Y, Fielding, K, Grant, AD and Churchyard, GJ (2016). XPHACTOR Clinical Score dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.204.

Harvey, S, Lees, S, Mshana, G, Pilger, D, Hansen, C, Kapiga, S and Watts, C (2018). Additional files for: "A cluster randomized controlled trial to assess the impact on intimate partner violence of a 10-session participatory gender training curriculum delivered to women taking part in a group-based microfinance loan scheme in Tanzania (MAISHA CRT01): study protocol". [Data Collection]. London School of Hygiene & Tropical Medicine, London. http://datacompass.lshtm.ac.uk/679/

Hayes, R, Floyd, S, Schaap, A, Shanaube, K, Bock, P, Sabapathy, K, Griffith, S, Donnell, D, Piwowar-Manning, E, El-Sadr, W, Beyers, N, Ayles, H and Fidler, S (2017). A universal testing and treatment intervention to improve HIV control: One-year results from intervention communities in Zambia in the HPTN 071 (PopART) cluster-randomised trial. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pmed.1002292.

Higgins, M, Ravenhall, M, Ward, D, Phelan, J, Ibrahim, A, Forrest, MS, Clark, TG, Campino, S and Hancock, J (2018). PrimedRPA: Primer design for Recombinase polymerase amplification assays. [Data Collection]. BioInformatics. https://doi.org/10.1093/bioinformatics/bty701

Horby, P, Thai, PQ, Hens, N, Yen, NTT, Mai, LQ, Thoang, DD, Linh, NM, Huong, NT, Alexander, N, Edmunds, WJ, Duong, TN, Fox, A and Hien, NT (2018). Social Contact Data for Vietnam. [Data Collection]. Zenodo digital repository. https://doi.org/10.5281/zenodo.1289473

Horton, KC, Sumner, T, Houben, Rein M G J, Corbett, EL and White, RG (2018). A Bayesian approach to understanding gender differences in tuberculosis disease burden. [Data Collection]. American Journal of Epidemiology. https://doi.org/10.1093/aje/kwy131

Jacob, PE, Lee, A, Murray, L and Funk, S (2017). rbi: R Interface to LibBi. [Data Collection]. The Comprehensive R Archive Network. https://cran.r-project.org/package=rbi

Jeandron, A, Cumming, O, Rumedeka, BB, Saidi, JM and Cousens, S (2018). Dataset for "Confirmation of cholera by rapid diagnostic test amongst patients admitted to the cholera treatment centre in Uvira, Democratic Republic of the Congo". [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0201306.s002

Johnson, A (2015). National Survey of Sexual Attitudes and Lifestyles, 2010-2012. [Data Collection]. UK Data Service, Essex, United Kingdom. http://dx.doi.org/10.5255/UKDA-SN-7799-1

Johnson, A and Mercer, C (2017). National Survey of Sexual Attitudes and Lifestyles, 2010-2012: Biological Data: Secure Access. [Data Collection]. UK Data Service, Colchester, Essex, United Kingdom. http://doi.org/10.5255/UKDA-SN-8179-1

Johnson, A and Mercer, C (2017). National Survey of Sexual Attitudes and Lifestyles, 2010-2012: Secure Access. [Data Collection]. UK Data Service, Colchester, Essex, United Kingdom. http://doi.org/10.5255/UKDA-SN-8178-1

Jombart, T, Campbell, F and Fitzjohn, R (2018). outbreaker2: Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data. [Data Collection]. The Comprehensive R Archive Network. https://CRAN.R-project.org/package=outbreaker2

Jombart, T, Cori, A, Didelot, X, Cauchemez, S, Fraser, C and Ferguson, N (2014). Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data. [Data Collection]. PLOS Computational Biology. https://doi.org/10.1371/journal.pcbi.1003457

Jombart, T, Kendall, M, Almagro-Garcia, J and Colijn, C (2018). treespace: exploration of landscapes of phylogenetic trees. [Data Collection]. Github. https://thibautjombart.github.io/treespace/

Karat, AS, Omar, T, von Gottberg, A, Tlali, M, Chihota, VN, Churchyard, GJ, Fielding, KL, Johnson, S, Martinson, NA, McCarthy, K, Wolter, N, Wong, EB, Charalambous, S and Grant, AD (2016). Autopsy Prevalence of Tuberculosis and Other Potentially Treatable Infections among Adults with Advanced HIV Enrolled in Out-Patient Care in South Africa: Lesedi Kamoso study data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.122.

Karat, A, Tlali, M, Fielding, K, Charalambous, S, Chihota, VN, Churchyard, GJ, Hanifa, Y, Johnson, S, McCarthy, K, Martinson, NA, Omar, T, Kahn, K, Chandramohan, D and Grant, AD (2016). Measuring mortality due to HIV-associated tuberculosis among adults in South Africa: comparing verbal autopsy, minimally-invasive autopsy, and research data. Data from the Lesedi Kamoso study. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.169.

Karkey, A, Jombart, T, Walker, AW, Thompson, CN, Torres, A, Dongol, S, Tran Vu Thieu, N, Pham Thanh, D, Tran Thi Ngoc, D, Voong Vinh, P, Singer, AC, Parkhill, J, Thwaites, G, Basnyat, B, Ferguson, N and Baker, S (2016). The Ecological Dynamics of Fecal Contamination and Salmonella Typhi and Salmonella Paratyphi A in Municipal Kathmandu Drinking Water. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0004346

Kazembe, L, Watts, P, Phillips, G, Petticrew, M, Hayes, R, Bottomley, C, Yu, G, Schmidt, E, Tobi, P, Moore, D, Frostick, C, Lock, K and Renton, A (2013). Physical Activity in Deprived Communities in London: Examining Individual and Neighbourhood-Level Factors. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0069472.

Kazungu, JS and Adetifa, I (2017). Replication Data for: Crude childhood vaccination coverage in West Africa: trends and predictors of completeness. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. http://dx.doi.org/10.7910/DVN/YQYES9

Kelly, C, Dube, A and Mortimer, K (2018). Data for: "From kitchen to classroom: Assessing the impact of cleaner burning biomass-fuelled cookstoves on primary school attendance in Karonga district, northern Malawi". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.282.

Kelly, H, Weiss, H, Benavente Moreno, Y, de Sanjose, S and Mayaud, P (2017). Antiretroviral therapy, high-risk human papillomavirus and cervical intraepithelial neoplasia: a systematic review and meta-analysis. [Data Collection]. Mendeley Data. http://dx.doi.org/10.17632/cg8k3d7rc8.1

Knight, G (2018). Code for "The relative fitness of drug resistant Mycobacterium tuberculosis: a modelling study of household transmission in Lima, Peru". [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.1205418

Knight, GM, Zimic, M, Funk, S, Gilman, RH, Friedland, JS and Grandjean, L (2018). Follow up time from The relative fitness of drug-resistant Mycobacterium tuberculosis: a modelling study of household transmission in Peru. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.6480617.v1

Kraemer, MUG, Sinka, ME, Duda, KA, Mylne, A, Shearer, FM, Brady, OJ, Messina, JP, Barker, CM, Moore, CG, Carvalho, RG, Coelho, GE, Van Bortel, W, Hendrickx, G, Schaffner, F, Wint, GRW, Elyazar, IRF, Teng, H and Hay, SI (2015). Data from: The global compendium of Aedes aegypti and Ae. albopictus occurrence. [Data Collection]. Dryad Digital Repository. https://doi.org/10.5061/dryad.47v3c

Kretzschmar, MEE, Tosas Auguet, O, Betley, JR, Stabler, R, Patel, A, Ioannou, A, Marbach, H, Hearn, P, Aryee, A, Goldenberg, SD, Otter, JA, Desai, N, Karadag, T, Grundy, C, Gaunt, M, Cooper, BS, Edgeworth, JD and Kypraios, T (2016). Evidence for Community Transmission of Community-Associated but Not Health-Care-Associated Methicillin-Resistant Staphylococcus Aureus Strains Linked to Social and Material Deprivation: Spatial Analysis of Cross-sectional Data. [Data Collection]. PLOS Medicine. https://doi.org/10.1371/journal.pmed.1001944

Kucharski, AJ, Funk, S, Eggo, RM, Mallet, H, Edmunds, WJ and Nilles, EJ (2016). Transmission Dynamics of Zika Virus in Island Populations: A Modelling Analysis of the 2013–14 French Polynesia Outbreak. [Data Collection]. PLoS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0004726.

Kucharski, AJ, Wenham, C, Brownlee, P, Racon, L, Widmer, N, Eames, KTD and Conlan, AJK (2018). Reported contacts dataset for "Structure and consistency of self-reported social contact networks in British secondary schools". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.1371/journal.pone.0200090.s002

Kucharski, AJ, Kama, M, Watson, CH, Aubry, M, Funk, S, Henderson, AD, Brady, OJ, Vanhomwegen, J, Manuguerra, J, Lau, CL, Edmunds, WJ, Aaskov, J, Nilles, EJ, Cao-Lormeau, V, Hué, S and Hibberd, ML (2018). Serological, surveillance and climate data for the 2013/14 DENV-3 outbreak in Central Division. [Data Collection]. eLife. https://doi.org/10.7554/eLife.34848.027

Kucharski, A, Conlan, AJK and Eames, K (2015). School's Out: Seasonal Variation in the Movement Patterns of School Children. [Data Collection]. Figshare Digital Repository. https://doi.org/10.1371/journal.pone.0128070.

Kucharski, A and Edmunds, J (2015). Characterizing the Transmission Potential of Zoonotic Infections from Minor Outbreaks: Simulation and Inference code. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.1371/journal.pcbi.1004154.s010.

Kucharski, A, Mills, H, Pinsent, A, Fraser, C, Kerkhove, MV and Riley, S (2014). Data from: Distinguishing between reservoir exposure and human-to-human transmission for emerging pathogens using case onset data. [Data Collection]. Dryad digital repository. https://doi.org/10.5061/dryad.2g43n.

Lal, S, Ndyomugenyi, R, Alexander, N, Lagarde, M, Paintain, L, Magnussen, P, Chandramoham, D and Clarke, S (2015). Health facility utilisation changes during the introduction of community case management of malaria in South Western Uganda: An interrupted time series approach. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.9.

Lalli, M, Ruysen, H, Blencowe, H, Yee, K, Clune, K, DeSilva, M, Leffler, M, Hillman, E, El-Noush, H, Mulligan, J, Murray, JC, Silver, K and Lawn, JE (2018). Saving Lives at Birth; development of a retrospective theory of change, impact framework and prioritised metrics. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.3990024.v1

Lammie, PJ, Kamgno, J, Nguipdop-Djomo, P, Gounoue, R, Téjiokem, M and Kuesel, AC (2016). Data for "Effect of Two or Six Doses 800 mg of Albendazole Every Two Months on Loa loa Microfilaraemia: A Double Blind, Randomized, Placebo-Controlled Trial". [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0004492.s002.

Langan, S, Smeeth, L, Margolis, DJ and Thomas, SL (2013). Herpes Zoster Vaccine Effectiveness against Incident Herpes Zoster and Post-herpetic Neuralgia in an Older US Population: A Cohort Study. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pmed.1001420.

Le Polain, O, Flasche, S, Prieto, D and Edmunds, J (2014). Age-Dependent Prevalence of Nasopharyngeal Carriage of Streptococcus pneumoniae before Conjugate Vaccine Introduction: Supporting Information. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.72.

Leung, K, Jit, M, Lau, EHY and Wu, JT (2018). Social contact data for Hong Kong. [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.1165562

Li, M, Taylor, EG, Atkins, KE, Chapman, GB and Galvani, AP (2016). Stimulating Influenza Vaccination via Prosocial Motives. [Data Collection]. PLoS One. http://dx.doi.org/10.1371/journal.pone.0159780

Loganathan, T, Ng, C, Lee, W and Jit, M (2016). Technical appendix to "The hidden health and economic burden of rotavirus gastroenteritis in Malaysia: an estimation using multiple data sources". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.98.

Mansfield, KE, Douglas, IJ, Nitsch, D, Thomas, SL, Smeeth, L and Tomlinson, L (2017). Read Code List - Arrhythmia. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.216.

Mansfield, KE, Douglas, IJ, Nitsch, D, Thomas, SL, Smeeth, L and Tomlinson, LA (2017). ICD-10 Code List - Arrhythmia. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.221.

Mansfield, KE, Douglas, IJ, Nitsch, D, Thomas, SL, Smeeth, L and Tomlinson, LA (2017). ICD-10 Code List - Cardiac Failure. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.219.

Mansfield, KE, Douglas, IJ, Nitsch, D, Thomas, SL, Smeeth, L and Tomlinson, LA (2017). ICD-10 Code List - Diabetes Mellitus. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.226.

Mansfield, KE, Douglas, IJ, Nitsch, D, Thomas, SL, Smeeth, L and Tomlinson, LA (2017). ICD-10 Code List - ESRD. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.217.

Mansfield, KE, Douglas, IJ, Nitsch, D, Thomas, SL, Smeeth, L and Tomlinson, LA (2017). ICD-10 Code List - Hypertension. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.227.

Mansfield, KE, Douglas, IJ, Nitsch, D, Thomas, SL, Smeeth, L and Tomlinson, LA (2017). ICD-10 Code List - Ischaemic Heart Disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.213.

Mansfield, KE, Douglas, IJ, Nitsch, D, Thomas, SL, Smeeth, L and Tomlinson, LA (2017). OPCS Code List - ESRD. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.222.

Mansfield, KE, Douglas, IJ, Nitsch, D, Thomas, SL, Smeeth, L and Tomlinson, LA (2017). Read Code List - Cardiac Failure. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.214.

Mansfield, KE, Douglas, IJ, Nitsch, D, Thomas, SL, Smeeth, L and Tomlinson, LA (2017). Read Code List - ESRD. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.212.

Mansfield, KE, Douglas, IJ, Nitsch, D, Thomas, SL, Smeeth, L and Tomlinson, LA (2017). Read Code List - Gastroenteritis. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.218.

Mansfield, KE, Douglas, IJ, Nitsch, D, Thomas, SL, Smeeth, L and Tomlinson, LA (2017). Read Code List - Hypertension. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.228.

Mansfield, KE, Douglas, IJ, Nitsch, D, Thomas, SL, Smeeth, L and Tomlinson, LA (2017). Read Code List - Ischaemic Heart Disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.215.

Mansfield, KE, Douglas, IJ, Nitsch, D, Thomas, SL, Smeeth, L and Tomlinson, LA (2017). Read Code List - Lower Respiratory Tract Infection. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.220.

Mansfield, KE, Douglas, IJ, Nitsch, D, Thomas, SL, Smeeth, L and Tomlinson, LA (2017). Read Code List - Urinary Tract Infection. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.225.

Mansfield, KE, Douglas, IJ, Nitsch, D, Thomas, S, Smeeth, L and Tomlinson, LA (2017). ICD-10 Code List - Acute Kidney Injury. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.224.

Mansfield, KE, Douglas, IJ, Nitsch, D, Thomas, S, Smeeth, L and Tomlinson, LA (2017). Read Code List - Diabetes Mellitus. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.223.

Marks, M, Camacho, A, Kucharski, A, Funk, S, Edmunds, J and Piot, P (2017). Ebola Dataset for "Learning Clinical Epidemiology with R" tutorial. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Marks, M, Goncalves, A, Vahi, V, Sokana, O, Puiahi, E, Zhang, Z, Dalipanda, T, Bottomley, C, Mabey, D and Solomon, A (2014). Evaluation of a Rapid Diagnostic Test for Yaws Infection in a Community Surveillance Setting. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pntd.0003156.

Marks, M, Mitja, O, Fitzpatrick, C, Asiedu, K, Solomon, AW, Mabey, D and Funk, S (2017). R files for: Mathematical Modeling of Programmatic Requirements for Yaws Eradication. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.266.

Marks, M, Mitjà, O, Bottomley, C, Kwakye, C, Houinei, W, Bauri, M, Adwere, P, Abdulai, AA, Dua, F, Boateng, L, Wangi, J, Ohene, S, Wangnapi, R, Simpson, SV, Miag, H, Addo, KK, Basing, LA, Danavall, D, Chi, KH, Pillay, A, Ballard, R, Solomon, AW, Chen, CY, Bieb, SV, Adu-Sarkodie, Y, Mabey, DCW and Asiedu, K (2018). Supplement to: "Comparative efficacy of low-dose versus standard-dose azithromycin for patients with yaws: a randomised non-inferiority trial in Ghana and Papua New Guinea". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000766.

Marks, M, Vahi, V, Sokana, O, Chi, C, Puiahi, E, Kilua, G, Pillay, A, Dalipanda, T, Bottomley, C, Solomon, AW and Mabey, D (2015). Impact of Community Mass Treatment with Azithromycin for Trachoma Elimination on the Prevalence of Yaws. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pntd.0003988.

Masala, G, Lipsitch, M, Bottomley, C and Flasche, S (2017). Supplementary material from "Exploring the role of competition induced by non-vaccine serotypes for herd protection following pneumococcal vaccination". [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.3911881.v1

Massad, E, dos Santos, PCC, da Rocha, AF and Stupple, EJN (2018). The Monty Hall problem revisited: Autonomic arousal in an inverted version of the game. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0192542

McCarthy, K, Fielding, K, Churchyard, GJ and Grant, AD (2018). Empiric tuberculosis treatment in South African primary health care facilities - for whom, where, when and why: Implications for the development of tuberculosis diagnostic tests. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0191608.s001

Mccreesh, N (2017). Model code for "An explanation for the low proportion of tuberculosis that results from transmission between household and known social contacts". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.283.

Mcquaid, CF, van den Bosch, F, Szyniszewska, A, Alicai, T, Pariyo, A, Chikoti, PC and Gilligan, CA (2017). Spatial dynamics and control of a crop pathogen with mixed-mode transmission. [Data Collection]. PLOS Computational Biology. https://doi.org/10.1371/journal.pcbi.1005654

Milligan, P (2016). Effectiveness of Seasonal Malaria Chemoprevention in children under 10 years of age in Senegal: a stepped-wedge cluster-randomized trial. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.117.

Moxon, S (2018). Measurement of inpatient care for small and sick newborns. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000902.

Mylne, A, Brady, OJ, Huang, Z, Pigott, DM, Golding, N, Kraemer, MU and Hay, SI (2014). A comprehensive database of the geographic spread of past human Ebola outbreaks. [Data Collection]. Figshare. https://dx.doi.org/10.6084/m9.figshare.1168886

NDiaye, JL and Milligan, P (2019). Data for: "Seasonal Malaria Chemoprevention combined with Community Case Management of malaria in children under 10 years of age, over 5 months, in southern Senegal: a cluster-randomized trial". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001017.

Nash, S, Mentzer, AJ, Lule, SA, Kizito, D, Smits, G, van der Klis, FR and Elliott, A (2017). Entebbe Mother and Baby Study - Data at one year. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.128.

Nliwasa, M, MacPherson, P, Chisala, P, Kamdolozi, M, Khundi, MJ, Kaswaswa, K, Mwapasa, M, Msefula, C, Sohn, H, Flach, C and Corbett, E (2016). LAMP minimal dataset. [Data Collection]. PLoS One. https://doi.org/10.1371/journal.pone.0155101.s001.

Nnko, S, Bukenya, D, Kavishe, BB, Biraro, S, Peck, R, Kapiga, S, Grosskurth, H and Seeley, J (2015). Chronic Diseases in North-West Tanzania and Southern Uganda. Public Perceptions of Terminologies, Aetiologies, Symptoms and Preferred Management. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0142194.

Nyiro, JU, Sande, CJ, Mutunga, M, Kiyuka, PK, Munywoki, PK, Scott, JAG and Nokes, DJ (2016). Absence of Association between Cord Specific Antibody Levels and Severe Respiratory Syncytial Virus (RSV) Disease in Early Infants: A Case Control Study from Coastal Kenya. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0166706.

Nyundo, C, Doyle, AM, Walumbe, D, Otiende, M, Kinuthia, M, Amadi, D, Jibendi, B, Mochamah, G, Kihuha, N, Williams, TN, Ross, DA and Bauni, E (2017). Dataset Files 1 and 2 for version 1 of "Linking health facility data from young adults aged 18-24 years to longitudinal demographic data: Experience from The Kilifi Health and Demographic Surveillance System". [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.5202850.v1

Overgaard, HJ, Alexander, N, Matiz, MI, Jaramillo, JF, Olano, VA, Vargas, S, Sarmiento, D, Lenhart, A and Stenström, TA (2016). A Cluster-Randomized Controlled Trial to Reduce Diarrheal Disease and Dengue Entomological Risk Factors in Rural Primary Schools in Colombia. [Data Collection]. Figshare. http://dx.doi.org/10.1371/journal.pntd.0005106

Palittapongarnpim, P, Ajawatanawong, P, Viratyosin, W, Smittipat, N, Disratthakit, A, Mahasirimongkol, S, Yanai, H, Yamada, N, Nedsuwan, S, Imasanguan, W, Kantipong, P, Chaiyasirinroje, B, Wongyai, J, Toyo-oka, L, Phelan, J, Parkhill, J, Clark, TG, Hibberd, ML, Ruengchai, W, Palittapongarnpim, P, Juthayothin, T, Tongsima, S and Tokunaga, K (2018). Evidence for Host-Bacterial Co-evolution via Genome Sequence Analysis of 480 Thai Mycobacterium tuberculosis Lineage 1 Isolates. [Data Collection]. Scientific Reports. https://doi.org/10.1038/s41598-018-29986-3

Patel, V, Weobong, B, Bhat, B, McDaid, D and Weiss, H (2017). PREMIUM twelve-month follow-up trial: Clinical Outcomes and Cost-effectiveness dataset from the Healthy Activity Program (HAP) RCT. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.205.

Phelan, JE, Coll, F, Bergval, I, Anthony, RM, Warren, R, Sampson, SL, Gey van Pittius, NC, Glynn, JR, Crampin, AC, Alves, A, Bessa, TB, Campino, S, Dheda, K, Grandjean, L, Hasan, R, Hasan, Z, Miranda, A, Moore, D, Panaiotov, S, Perdigao, J, Portugal, I, Sheen, P, de Oliveira Sousa, E, Streicher, EM, van Helden, PD, Viveiros, M, Hibberd, ML, Pain, A, Mcnerney, R and Clark, TG (2016). Data for: "Recombination in pe/ppe genes contributes to genetic variation in Mycobacterium tuberculosis lineages". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. http://pathogenseq.lshtm.ac.uk/pe_ppe/

Phelan, J, Coll, F, Mcnerney, R, Ascher, DB, Pires, DEV, Furnham, N, Coeck, N, Hill-Cawthorne, GA, Nair, MB, Mallard, K, Ramsay, A, Campino, S, Hibberd, M, Pain, A, Rigouts, L and Clark, T (2015). Whole genome sequences for M.tuberculosis isolates from the TDR strain bank. [Data Collection]. European Nucleotide Archive. http://www.ebi.ac.uk/ena/data/view/PRJEB11653

Phelan, J, Maitra, A, Mcnerney, R, Nair, M, Gupta, A, Coll, F, Pain, A, Bhakta, S and Clark, TG (2015). Data for: "The draft genome of Mycobacterium aurum, a potential model organism for investigating drugs against Mycobacterium tuberculosis and Mycobacterium leprae". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. http://pathogenseq.lshtm.ac.uk/m_aurum/

Pickering, S, Hué, S, Kim, E, Reddy, S, Wolinsky, SM and Neil, SJD (2017). Preservation of Tetherin and CD4 Counter-Activities in Circulating Vpu Alleles despite Extensive Sequence Variation within HIV-1 Infected Individuals. [Data Collection]. Figshare. https://doi.org/10.1371/journal.ppat.1003895

Pigott, DM, Golding, N, Mylne, A, Huang, Z, Henry, AJ, Weiss, DJ, Brady, OJ, Kraemer, MU, Smith, DL, Moyes, CL, Bhatt, S, Gething, PW, Horby, PW, Bogoch, II, Brownstein, JS, Mekaru, SR, Tatem, AJ, Khan, K and Hay, SI (2014). Source code for analysis of the zoonotic niche of Ebolavirus. [Data Collection]. GitHub, Inc.. https://doi.org/10.7554/eLife.04395.

Preston, MD, Manske, M, Horner, N, Assefa, S, Campino, S, Auburn, S, Zongo, I, Ouedraogo, J, Nosten, F, Anderson, T and Clark, T (2012). VCF Viewer (VARB). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. http://pathogenseq.lshtm.ac.uk/

Rosello, A, Mossoko, M, Flasche, S, Vanhoek, A, Mbala, P, Camacho, A, Funk, S, Kucharski, A, Ilunga, BK, Edmunds, J, Piot, P, Baguelin, M and Tamfum, JM (2015). Ebola virus disease in the Democratic Republic of the Congo, 1976-2014: Figures and Data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.30.

Schallig, Henk D. F. H., Rassi, C, Gore-langton, GR, Gidudu Walimbwa, B, Strachan, CE, King, R, Basharat, S, Christiansen-Jucht, C, Graham, K and Gudoi, SS (2018). Improving health worker performance through text messaging: A mixed-methods evaluation of a pilot intervention designed to increase coverage of intermittent preventive treatment of malaria in pregnancy in West Nile, Uganda. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0203554

Seale, AC, Bianchi-jassir, F, Russell, N, Kohli-lynch, M, Tann, C, Hall, J, Madrid, L, Blencowe, H, Cousens, S, Baker, C, Bartlett, L, Cutland, C, Gravett, M, Heath, P, Ip, M, Le Doare, K, Madhi, S, Rubens, CE, Saha, S, Schrag, S, Sobanjo-ter Meulen, A, Vekemans, J and Lawn, JE (2017). Data for: "Estimates of the Burden of Group B Streptococcal Disease Worldwide for Pregnant Women, Stillbirths, and Children". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.51.

Sepúlveda, N, Phelan, J, Diez-Benavente, E, Campino, S, Clark, TG, Hopkins, H, Sutherland, C, Drakeley, CJ and Beshir, KB (2018). Global analysis of Plasmodium falciparum histidine-rich protein-2 ( pfhrp2 ) and pfhrp3 gene deletions using whole-genome sequencing data and meta-analysis. [Data Collection]. Infection, Genetics and Evolution. https://doi.org/10.1016/j.meegid.2018.04.039

Seward, N, Prost, A, Copas, A, Corbin, M, Li, L, Colbourn, T, Osrin, D, Neuman, M, Azad, K, Kuddus, A, Nair, N, Tripathy, P, Manandhar, D, Costello, A and Cortina-Borja, M (2015). Using Observational Data to Estimate the Effect of Hand Washing and Clean Delivery Kit Use by Birth Attendants on Maternal Deaths after Home Deliveries in Rural Bangladesh, India and Nepal. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0136152

Shearer, FM, Huang, Z, Weiss, DJ, Wiebe, A, Gibson, HS, Battle, KE, Pigott, DM, Brady, OJ, Putaporntip, C, Jongwutiwes, S, Lau, YL, Manske, M, Amato, R, Elyazar, IRF, Vythilingam, I, Bhatt, S, Gething, PW, Singh, B, Golding, N, Hay, SI and Moyes, CL (2016). Database of Plasmodium knowlesi infections recorded in humans, macaque reservoirs and vectors. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0004915.s002

Sobkowiak, B, Glynn, JR, Houben, Rein M. G. J., Mallard, K, Phelan, JE, Guerra-Assunção, JA, Banda, L, Mzembe, T, Viveiros, M, McNerney, R, Parkhill, J, Crampin, AC and Clark, TG (2018). Additional file 1: of Identifying mixed Mycobacterium tuberculosis infections from whole genome sequence data. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.6968636.v1

Southern, J, Andrews, N, Sandu, P, Sheppard, CL, Waight, PA, Fry, NK, Vanhoek, AJ and Miller, E (2018). Pneumococcal carriage in children and their household contacts six years after introduction of the 13-valent pneumococcal conjugate vaccine in England. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0195799.s001

Stone, WJR, Campo, JJ, Ouédraogo, AL, Meerstein-Kessel, L, Morlais, I, Da, D, Cohuet, A, Nsango, S, Sutherland, CJ, van de Vegte-Bolmer, M, Siebelink-Stoter, R, van Gemert, G, Graumans, W, Lanke, K, Shandling, AD, Pablo, JV, Teng, AA, Jones, S, de Jong, RM, Fabra-García, A, Bradley, J, Roeffen, W, Lasonder, E, Gremo, G, Schwarzer, E, Janse, CJ, Singh, SK, Theisen, M, Felgner, P, Marti, M, Drakeley, C, Sauerwein, R, Bousema, T and Jore, MM (2018). Data from: Unravelling the immune signature of Plasmodium falciparum transmission-reducing immunity. [Data Collection]. Dryad Digital Repository. https://doi.org/10.5061/dryad.8bp05

Sumner, T (2018). Mathematical model projections for: "Application of provincial data in mathematical modelling to inform sub-national tuberculosis program decision-making in South Africa". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000950.

Sunny, B, Glynn, JR and Crampin, AC (2018). Data for the paper on “Does early growth failure influence later school performance? A cohort study in Karonga district, northern Malawi”. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000675.

Sunny, B, Glynn, JR, Crampin, AC and Kanjala, C (2018). Data for the paper on "Early school failure predicts teenage pregnancy and marriage: a large population-based cohort study in Northern Malawi". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.285.

Tam, CC, O’Driscoll, M, Taurel, A, Nealon, J and Hadinegoro, SR (2018). Geographic variation in dengue seroprevalence and force of infection in the urban paediatric population of Indonesia. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0006932

Tam, C and Viviani, L (2016). Second Study of Infectious Intestinal Disease in the United Kingdom, 2008-2009. [Data Collection]. UK Data Service, Colchester, Essex. https://doi.org/10.5255/UKDA-SN-7820-1.

Tientcheu, L, Haks, MC, Agbla, S, Sutherland, JS, Adetifa, I, Donkor, S, Quinten, E, Daramy, M, Antonio, M, Kampmann, B, Ottenhoff, THM, Dockrell, H and Ota, MO (2016). Host Immune Responses Differ between M. africanum- and M. tuberculosis-Infected Patients following Standard Anti-tuberculosis Treatment. [Data Collection]. PLoS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0004701.

Tusting, LS, Rek, J, Arinaitwe, E, Staedke, SG, Kamya, MR, Cano, J, Bottomley, C, Johnston, D, Dorsey, G, Lindsay, SW and Lines, J (2016). Additional file 4: of Why is malaria associated with poverty? Findings from a cohort study in rural Uganda. [Data Collection]. Figshare. http://doi.org/10.6084/m9.figshare.c.3641432_D2.v1

VanHoek, A (2017). Economic evaluation of HIV-exposure Prophylaxis among men who have sex with men in England: Supplementary material. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/PUBS.04433707

Vanobberghen, F, Weiss, H, D’Souza, E, Patel, V, Rahman, A, Fuhr, D, Weobung, B and Lazarus, A (2018). Data for Thinking Healthy Programme India trial (THPP-India). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000793.

Vanobberghen, F, Weiss, H, Zaidi, A, Patel, V, Rahman, A, Sikander, S, Fuhr, D and Ahmad, I (2018). Data for Thinking Healthy Programme Pakistan trial (THPP-Pakistan). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000794.

Velen, K, Lewis, JJ, Charalambous, S, Page-Shipp, L, Popane, F, Churchyard, GJ and Hoffmann, CJ (2016). Household HIV Testing Uptake among Contacts of TB Patients in South Africa. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0155688.

Watson, CH, Coriakula, J, Ngoc, DTT, Flasche, S, Kucharski, AJ, Lau, CL, Thieu, NTV, le Polain de Waroux, O, Rawalai, K, Van, TT, Taufa, M, Baker, S, Nilles, EJ, Kama, M and Edmunds, WJ (2017). Social mixing in Fiji: Who-eats-with-whom contact patterns and the implications of age and ethnic heterogeneity for disease dynamics in the Pacific Islands. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0186911

Webb, E (2016). Data from a cluster randomized trial in Uganda concerning the management of fever cases in public health faclilities. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.121.

Weiss, H, Danquah, L, Hasham, N and MacFarlane, M (2019). Ebola Contact Tracing Study data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001069.

Weiss, H, Nakinyingi-Miiro, J and Sembajjwe, W (2018). Data for: "Menstrual health and school absenteeism among adolescent girls in Uganda (MENISCUS): feasibility study". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.275.

Weiss, H, Nakinyingi-Miiro, J, Sembajjwe, W and Gibson, L (2017). MENISCUS SMC dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.208.

White, R (2014). Respondent-Driven Sampling and Total Population Data from a Rural Ugandan Cohort, 2010: Special Licence Access. [Data Collection]. UK Data Service, Essex, United Kingdom. http://dx.doi.org/10.5255/UKDA-SN-7462-1

White, R and Dodd, P (2011). Casual and close contact data for buildings in South Africa and Zambia. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.28.

Ziraba, A, Orindi, B, Muuo, S, Floyd, S, Birdthistle, IJ, Mumah, J, Osindo, J, Njoroge, P and Kabiru, CW (2018). S7 Table in "Understanding HIV risks among adolescent girls and young women in informal settlements of Nairobi, Kenya: Lessons for DREAMS". [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0197479.s007

Zirba, A, Orindi, B, Muuo, S, Floyd, S, Birdthistle, IJ, Mumah, J, Osindo, J, Njoroge, P and Kabiru, CW (2018). Understanding HIV risks among adolescent girls and young women in informal settlements of Nairobi, Kenya: Lessons for DREAMS. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0197479

de Lencastre, H, Manna, S, Dunne, EM, Ortika, BD, Pell, CL, Kama, M, Russell, FM, Mungun, T, Mulholland, KE, Hinds, J and Satzke, C (2018). Discovery of a Streptococcus pneumoniae serotype 33F capsular polysaccharide locus that lacks wcjE and contains a wcyO pseudogene. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0206622

le Polain de Waroux, O, Flasche, S, Kucharski, AJ, Langendorf, C, Ndazima, D, Mwanga-Amumpaire, J, Grais, RF, Cohuet, S and Edmunds, WJ (2018). Data for: Identifying human encounters that shape the transmission of Streptococcus pneumoniae and other acute respiratory infections. [Data Collection]. Mendeley Data. https://doi.org/10.17632/rdskdgxrh3.1

This list was generated on Thu Jun 20 02:03:05 2019 BST.