Items where completion year is 2021

LSHTM Data Compass

Items where completion year is 2021

Number of items: 591.

A

Rapid Assessment of Avoidable Blindness Dataset: Ethiopia, Oromia, Jimma (2021). (2021) Ababora, Jafer Kedir

Continent Summary Reproduction Number (R) Based on Reported Cases. (2021) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian

Local Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Admissions. (2021) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian

Local Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Deaths. (2021) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian

National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Belgium Based on Test Results. (2021) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian

National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Canada Based on Test Results. (2021) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian

National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Colombia Based on Test Results. (2021) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian

National and Subnational Estimates of the Covid 19 Reproduction Number (R) for South Africa Based on Test Results. (2021) Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian

epiforecasts/forecast.vocs. (2021) Abbott, Sam, Bracher, Johannes

epiforecasts/covid19.sgene.utla.rt. (2021) Abbott, Sam, Funk, Sebastian

martyn1fyles/HouseholdContactTracing. (2021) Abbott, Sam, Fyles, Martyn

epiforecasts/EpiNow2. (2021) Abbott, Sam, Hickson, Joe, Badr, Hamada S., Funk, Sebastian, Monticone, Pietro, Ellis, Peter, Munday, James D., Allen, Jamie, Pearson, Carl A. B., DeWitt, Michael, Bosse, Nikos, Meakin, Sophie

epiforecasts/covid19.nhs.data: Initial release. (2021) Abbott, Sam, Meakin, Sophie

epiforecasts/epinowcast. (2021) Abbott, Sam, Monticone, Pietro

Real-time estimation of the time-varying transmission advantage of Omicron in England using S-Gene Target Status as a Proxy. (2021) Abbott, Sam, Sherratt, Katharine, Funk, Sebastian

Additional file 1 of Acceptability and feasibility of strategies to shield the vulnerable during the COVID-19 outbreak: a qualitative study in six Sudanese communities. (2021) Abdelmagid, Nada, Ahmed, Salma A. E., Nurelhuda, Nazik, Zainalabdeen, Israa, Ahmed, Aljaile, Fadlallah, Mahmoud Ali, Dahab, Maysoon

Data from: The impact of long-term azithromycin on antibiotic resistance in HIV-associated chronic lung disease. (2021) Abotsi, Regina Esinam, Nicol, Mark P., McHugh, Grace, Simms, Victoria, Rehman, Andrea M., Barthus, Charmaine, Ngwira, Lucky G., Kwambana-Adams, Brenda, Heyderman, Robert S, Odland, Jon Ø, Ferrand, Rashida A, Dube, Felix S.

Code to replicate "Quantifying impacts of the COVID-19 pandemic through life expectancy losses". (2021) Aburto, José Manuel, Schöley, Jonas, Kashnitsky, Ilya, Knowles, Ian, Zhang, Luyin, Rahal, Charles, Missov, Trifon I, Dowd, Jennifer B, Mills, Melinda C, Kashyap, Ridhi

Clinical Code list - Read codes for substance abuse. (2021) Adesanya, Elizabeth, Cook, Sarah, Mansfield, Kathryn E., Crellin, Elizabeth, Smeeth, Liam, Herrett, Emily

Clinical code list - Talking therapies. (2021) Adesanya, Elizabeth, Cook, Sarah, Mansfield, Kathryn E., Crellin, Elizabeth, Smeeth, Liam, Herrett, Emily

Code lists for "Alcohol use recording in people with depression in English primary care". (2021) Adesanya, Elizabeth, Cook, Sarah, Mansfield, Kathryn E., Crellin, Elizabeth, Smeeth, Liam, Herrett, Emily

Product codes - Antidepressants. (2021) Adesanya, Elizabeth, Cook, Sarah, Mansfield, Kathryn E., Crellin, Elizabeth, Smeeth, Liam, Herrett, Emily

Replication Data for: Temporal trends of SARS-CoV-2 seroprevalence in transfusion blood donors during the first wave of the COVID-19 epidemic in Kenya. (2021) Adetifa, Ifedayo M. O., Uyoga, Sophie, Gitonga, John N., Mugo, Daisy, Otiende, Mark, Nyagwange, James, Karanja, Henry K., Tuju, James, Wanjiku, Perpetual, Aman, Rashid, Mwangangi, Mercy, Amoth, Patrick, Kasera, Kadondi, Ng’ang’a, Wangari, Rombo, Charles, Yegon, Christine, Kithi, Khamisi, Odhiambo, Elizabeth, Rotich, Thomas, Orgut, Irene, Kihara, Sammy, Bottomley, Christian, Kagucia, Eunice W., Gallagher, Katherine E., Etyang, Anthony, Voller, Shirine, Lambe, Teresa, Wright, Daniel, Barasa, Edwine, Tsofa, Benjamin, Bejon, Philip, Ochola-Oyier, Lynette I., Agweyu, Ambrose, Scott, J. Anthony G., Warimwe, George M.

Data for: "Estimating force of infection from serologic surveys with imperfect tests". (2021) Alexander, Neal, Carabali, Mabel, Lim, Jacqueline K.

Research priorities in maternal and neonatal health in Africa: results using the Child Health and Nutrition Research Initiative method involving over 900 experts across the continent. (2021) Alobo, Moses, Mgone, Charles, Wesonga, Colette Adhiambo, Lawn, Joy E., Ezeaka, Chinyere, Okong, Pius, Temmerman, Marleen, Molineux, Elizabeth, Malata, Address, Wazny, Kerri, Kariuki, Thomas

Data_Sheet_1_Reduced Placental Transfer of Antibodies Against a Wide Range of Microbial and Vaccine Antigens in HIV-Infected Women in Mozambique. (2021) Alonso, Selena, Vidal, Marta, Ruiz-Olalla, Gemma, González, Raquel, Manaca, M. Nelia, Jairoce, Chenjerai, Vázquez-Santiago, Miquel, Balcells, Reyes, Vala, Anifa, Rupérez, María, Cisteró, Pau, Fuente-Soro, Laura, Cova, Marta, Angov, Evelina, Nhacolo, Arsenio, Sevene, Esperança, Aponte, John J., Macete, Eusebio, Aguilar, Ruth, Mayor, Alfredo, Menéndez, Clara, Dobaño, Carlota, Moncunill, Gemma

Effects of a school-based intervention to reduce cardiovascular disease risk factors among secondary school students: A cluster-randomized, controlled trial. Working dataset. (2021) Amoah, John, Said, Salmiah, Rampal, Lekhraj, Manaf, Rosliza, Ibrahim, Normala, Owusu-Agyei, Seth, Poku Asante, Kwaku

Questionnaire for women’s satisfaction survey on antenatal care. (2021) Aninanya, Gifty Apiung, Otupiri, Easmon, Howard, Natasha

Study investigating the clinical manifestations of Rift Valley fever in humans: Systematic review and meta-analysis. (2021) Anywaine, Zacchaeus, Lule, Swaib Abubaker, Hansen, Christian, Warimwe, George, Elliott, Alison

Replication Data for: Seroprevalence of anti–SARS-CoV-2 antibodies in women attending antenatal care in eastern Ethiopia. (2021) Assefa, Nega, Demissie, Lemma, Teklemarriam, Zelalem, Oundo, Joseph O., Madrid, Lola, Dessie, Yadeta, Scott, J. Anthony G.

mauzenbergs/polio_vdpv. (2021) Auzenbergs, Megan, Fountain, Holly, Macklin, Grace, Lyons, Hil, O'reilly, Kathleen M.

Hand hygiene intervention to optimise soil transmitted helminths infection control among primary school children: endline survey data from a cluster randomised trial. (2021) Ayieko, Philip, Hashim, Ramadhan, Grosskurth, Heiner, Kapiga, Saidi

B

Dataset of 1241 clients of RMNCH services during the COVID-19 outbreak in Lagos. (2021) Balogun, Mobolanle, Banke-Thomas, Aduragbemi, Sekoni, Adekemi, Boateng, Godfred O., Yesufu, Victoria, Wright, Ololade, Ubani, Osinachi, Abayomi, Akin, Afolabi, Bosede B., Ogunsola, Folasade

ZikaPLAN – Research tools used for focus group discussion and interviews. (2021) Bancroft, Danielle, Power, Grace, Jones, Robert, Massad, Eduardo, Bernstein Iriat, Jorge, Preet, Raman, Kinsman, John, Logan, James

Sample accession list for "Malaria protection due to sickle haemoglobin depends on parasite genotype". (2021) Band, Gavin, Leffler, Ellen M., Jallow, Muminatou, Sisay-Joof, Fatoumatta, Ndila, Carolyne M., Macharia, Alexander W., Hubbart, Christina, Jeffreys, Anna E., Rowlands, Kate, Nguyen, Thuy, Goncalves, Sonia M., Ariani, Cristina V., Stalker, Jim, Pearson, Richard D., Amato, Roberto, Drury, Eleanor, Sirugo, Giorgio, D'Alessandro, Umberto, Bojang, Kalifa A., Marsh, Kevin, Peshu, Norbert, Conway, David J., Williams, Thomas N., Rockett, Kirk A., Kwiatkowski, Dominic P.

Summary statistics for association tests between human and Plasmodium falciparum genetic variants in 3,346 severe malaria cases from The Gambia and Kenya. (2021) Band, Gavin, Leffler, Ellen M., Jallow, Muminatou, Sisay-Joof, Fatoumatta, Ndila, Carolyne M., Macharia, Alexander W., Hubbart, Christina, Jeffreys, Anna E., Rowlands, Kate, Nguyen, Thuy, Goncalves, Sonia M., Ariani, Cristina V., Stalker, Jim, Pearson, Richard D., Amato, Roberto, Drury, Eleanor, Sirugo, Giorgio, D'Alessandro, Umberto, Bojang, Kalifa A., Marsh, Kevin, Peshu, Norbert, Conway, David J., Williams, Thomas N., Rockett, Kirk A., Kwiatkowski, Dominic P.

A dataset of human and Plasmodium falciparum genotypes in severe malaria cases from The Gambia and Kenya. (2021) Band, Gavin, Leffler, Ellen M., Jallow, Muminatou, Sisay-Joof, Fatoumatta, Ndila, Carolyne M., Macharia, Alexander W., Hubbart, Christina, Jeffreys, Anna E., Rowlands, Kate, Nguyen, Thuy, Goncalves, Sonia M., Ariani, Cristina V., Stalker, Jim, Pearson, Richard D., Amato, Roberto, Drury, Eleanor, Sirugo, Giorgio, D'Alessandro, Umberto, Bojang, Kalifa A., Marsh, Kevin, Peshu, Norbert, Conway, David J., Williams, Thomas N., Rockett, Kirk A., Kwiatkowski, Dominic P.

BayesSUR: Bayesian Seemingly Unrelated Regression. (2021) Banterle, Marco, Zhao, Zhi, Bottolo, Leonardo, Richardson, Sylvia, Leoncio, Waldir, Lewin, Alexandra, Zucknick, Manuela, Zhao, Zhi

Code lists for: "Real-world effects of ACE inhibitors and Angiotensin Receptor Blockers: protocol for an emulation study of the ONTARGET trial using electronic health records". (2021) Baptiste, Paris, Tomlinson, Laurie A.

Additional file 1 of Level and determinants of county health system technical efficiency in Kenya: two stage data envelopment analysis. (2021) Barasa, Edwine, Musiega, Anita, Hanson, Kara, Nyawira, Lizah, Mulwa, Andrew, Molyneux, Sassy, Maina, Isabel, Tsofa, Benjamin, Normand, Charles, Jemutai, Julie

Additional file 3 of Effectiveness of interventions to increase uptake and completion of treatment for diabetic retinopathy in low- and middle-income countries: a rapid review protocol. (2021) Bascaran, Covadonga, Mwangi, Nywaira, D’Esposito, Fabrizio, Cleland, Charles, Gordon, Iris, Ulloa, Juan Alberto Lopez, Maswadi, Ranad, Mdala, Shaffi, Ramke, Jacqueline, Evans, Jennifer R., Burton, Matthew J.

PredictiveEcology/NetLogoR. (2021) Bauduin, Sarah, Chubaty, Alex, McIntire, Eliot, Kohli, Manik, Gruson, Hugo

The RAG1 N-terminal region regulates the efficiency and pathways of synapsis for V(D)J recombination. (2021) Beilinson, HA, Yadavalli, AD, Xiao, J, Corbett, Liz, Saribasak, H, Schatz, DG

The RAG1 N-terminal region regulates the efficiency and pathways of synapsis for V(D)J recombination. (2021) Beilinson, Helen A, Glynn, Rebecca A, Yadavalli, Anurupa Devi, Xiao, Jianxiong, Corbett, Elizabeth L., Saribasak, Huseyin, Arya, Rahul, Miot, Charline, Bhattacharyya, Anamika, Jones, Jessica M, Pongubala, Jagan MR, Bassing, Craig H, Schatz, David G

Additional file 1 of Prevalence and correlates of common mental health problems and recent suicidal thoughts and behaviours among female sex workers in Nairobi, Kenya. (2021) Beksinska, Alicja, Jama, Zaina, Kabuti, Rhoda, Kungu, Mary, Babu, Hellen, Nyariki, Emily, Shah, Pooja, Gwala, Demtilla, Oside, Daisy, Kamene, Ruth, Watata, Agnes, Atieno, Agnes, Njau, Faith, Njeri, Elizabeth, Orobi, Evelyn, Lwingi, Ibrahim, Nyabuto, Chrispo, Okumu, Monica, Mahero, Anne, Ngurukiri, Pauline, Irungu, Erastus, Adhiambo, Wendy, Muthoga, Peter, Kaul, Rupert, Seeley, Janet, Beattie, Tara S., Weiss, Helen A., Kimani, Joshua

Search strategies for: "Climate action for health and wellbeing in cities: a protocol for the systematic development of a database of peer-reviewed studies using machine learning methods". (2021) Belesova, Kristine, Callaghan, Max, Minx, Jan, Creutzig, Felix, Turcu, Catalina, Hutchinson, Emma, Milner, James, Crane, Melanie, Haines, Andy, Davies, Mike, Wilkinson, Paul

COVID-19 vaccination beliefs, attitudes, and behaviours among health and social care workers in the UK: Survey dataset. (2021) Bell, Sadie, Clarke, Richard, Mounier-Jack, Sandra, Paterson, Pauline, Ismail, Sharif, Ojo-Aromokudu, Oyinkansola

Dataset for article Berrang-Ford et al. "Systematic mapping of global research on climate and health using machine learning" The Lancet Planetary Health. (2021) Berrang-Ford, Lea, Sietsma, Anne J., Callaghan, Max, Minx, Jan, Scheelbeek, Pauline, Haddaway, Neal, Haines, Andrew, Dangour, Alan D.

Clinical codelist - Cancer. (2021) Bhaskaran, Krishnan

Clinical codelist - Smoking status read codes. (2021) Bhaskaran, Krishnan

Risk factor codelist - Smoking. (2021) Bhaskaran, Krishnan

opensafely/covid-vs-noncovid-deaths-research. (2021) Bhaskaran, Krishnan, Inglesby, Peter

Dataset for: Using the Mothers Object Relations Scale for early childhood development research in rural India. (2021) Bhopal, Sunil S, Roy, Reetabrata, Verma, Deepali, Kumar, Divya, Khan, Bushra, Soremekun, Seyi, Oates, John, Divan, Gauri, Kirkwood, Betty R

England-Codelist-ICD10-Covariates. (2021) Bidulka, Patrick

England-Codelist-ICD10-Outcomes. (2021) Bidulka, Patrick

England-Codelist-ProductCodes-Covariates. (2021) Bidulka, Patrick

England-Codelist-ReadCodes-Covariates. (2021) Bidulka, Patrick

Codelists for: "Adverse outcomes after partner bereavement in people with reduced kidney function: parallel cohort studies in England and Denmark". (2021) Bidulka, Patrick, Vestergaard, Søren Viborg

Archive of figure generating data. (2021) Blassel, Luc, Tostevin, Anna, Villabona-arenas, Christian Julián, Peeters, Martine, Hue, Stephane, Gascuel, Olivier

Additional file 1 of Musculoskeletal impairment among Syrian refugees living in Sultanbeyli, Turkey: prevalence, cause, diagnosis and need for related services and assistive products. (2021) Boggs, Dorothy, Atijosan-Ayodele, Oluwarantimi, Yonso, Hisem, Scherer, Nathaniel, O'Fallon, Timothy, Deniz, Gülten, Volkan, Selin, Örücü, Ahmed, Pivato, Isotta, Beck, Ammar Hasan, Akıncı, İbrahim, Kuper, Hannah, Foster, Allen, Patterson, Andrea, Polack, Sarah

Images of selected cells of the TbGOS02 recombinant Trypanosoma brucei brucei cell line. (2021) Borg, Yanika, Alsford, Sam, Zaikin, Alexey, Nesbeth, Darren

Sequence of the UbeK trypanosomal degron. (2021) Borg, Yanika, Alsford, Sam, Zaikin, Alexey, Nesbeth, Darren

Long term effects of payment for performance on maternal and child health outcomes– evidence from Tanzania. (2021) Borghi, Josephine, Binyaruka, Peter, Mayumana, Iddy, Lange, Siri, Somville, Vincent, Maestad, Ottar

nikosbosse/mirmeth: Alpha version. (2021) Bosse, Nikos

christian-bottomley/mixture_model_sarscov2. (2021) Bottomley, Christian

Data from: Higher gametocyte production and mosquito infectivity in chronic compared to incident Plasmodium falciparum infections. (2021) Bousema, Teun

Plasmodium falciparum gametocyte density and infectivity in peripheral blood and skin tissue of naturally infected parasite carriers in Burkina Faso. (2021) Bousema, Teun, Meibalan, Elamara, Barry, Aissata, Gibbins, Matthew, Awandu, Shehu, Meerstein-Kessel, Lisette, Achar, Fiona, Bopp, Selina, Moxon, Christopher, Diarra, Amidou, Debe, Siaka, Ouedraogo, Nicolas, Barry-Some, Ines, Badoum, Emilie, Fagnima, Traore, Lanke, Kjerstin, Goncalves, Bronner, Bradley, John, Wirth, Dyann, Drakeley, Chris, Guelbeogo, Wamdaogo, Tiono, Alfred, Marti, Matthias, Gibbins, Matthew P, Achcar, Fiona, Ouédraogo, Nicolas, Badoum, Emilie S, Fagnima, Traoré, Gonçalves, Bronner P, Guelbeogo, Wamdaogo Moussa, Tiono, Alfred B.

Data for: "Kankasha in Kassala: a prospective observational cohort study of the clinical characteristics, epidemiology, genetic origin, and chronic impact of the 2018 epidemic of Chikungunya virus infection in Kassala, Sudan". (2021) Bower, Hilary, el Karsany, Mubarak, Adam, Abd Alhadi Adam Hussein, Idriss, Mubarak Ibrahim, Alzain, Ma’aaza Abasher, Alfakiyousif, Mohamed Elamin Ahmed, Mohamed, Rehab, Mahmoud, Iman, Albadri, Omer, Mahmoud, Suha Abdulaziz Alnour, Abdalla, Orwa Ibrahim, Eldigail, Mawahib, Elagib, Nuha, Arnold, Ulrike, Gutierrez8, Bernardo, Pybus, Oliver G., Carter, Daniel P., Pullan, Steven T., Jacob, Shevin T., Abdallah, Tajeldin Mohammedein, Gannon, Benedict, Fletcher, Tom E.

KITmetricslab/covid19-forecast-hub-de. (2021) Bracher, J., Wolffram, D., Deuschel, J., Görgen, K., Ketterer, J.L., Ullrich, A., Abbott, Sam, Barbarossa, M.V., Bertsimas, D., Bhatia, S., Bodych, M., Bosse, Nikos I., Burgard, J.P., Castro, L., Fairchild, G., Fuhrmann, J., Funk, Sebastian, Gogolewski, K., Gu, Q., Heyder, S., Hotz, T., Kheifetz, Y., Kirsten, H., Krueger, T., Krymova, E., Li, M.L., Meinke, J.H., Michaud, I.J., Niedzielewski, K., Ożański, T., Rakowski, F., Scholz, M., Soni, S., Srivastava, A., Zieliński, J., Zou, D., Gneiting, T., Schienle, M.

ojal/KenyaSerology. (2021) Brand, Samuel, Ojal, John

Code lists for: "Incidence of Lyme disease in the United Kingdom and association with fatigue: a population-based, historical cohort study". (2021) Brellier, Florence

Diagnosis codelist - Lyme disease codes. (2021) Brellier, Florence

Diagnosis/symptom codelist - fatigue codes. (2021) Brellier, Florence

rachaelmburke/hivhospital. (2021) Burke, Rachael

rachaelmburke/tbcovidblantyre. (2021) Burke, Rachael

C

Therapy codelist - CPRD GOLD - antiplatelets. (2021) Cadogan, Sharon

Clinical codelist - CPRD Gold - chronic kidney disease. (2021) Cadogan, Sharon, Warren-Gash, Charlotte

Clinical codelist - CPRD Gold - chronic liver disease. (2021) Cadogan, Sharon, Warren-Gash, Charlotte

Codelists for: "Anticoagulant prescribing in atrial fibrillation and incident dementia: a UK population-based cohort study". (2021) Cadogan, Sharon, Warren-Gash, Charlotte

Low-Cost Behaviour Change Interventions to Improve Latrine Use and Safe Child Faeces Disposal in Rural Odisha, India. (2021) Caruso, Bethany, Sclar, Gloria D., Routray, Parimita, Nagel, Corey L., Majorin, Fiona, Sola, Steven, Koehne, William, Clasen, Thomas F

Methods and Code. (2021) Castaneda-Guzman, Mariana, Mantilla-Saltos, Gabriel, Murray, Kris A., Settlage, Robert, Escobar, Luis E

Patients attended: Scabies, Impetigo and demographic data. (2021) Chandler, David John, Galván-Casas, Cristina, Mitjá, Oriol, Esteban, Sara, Kafulafula, Jacob, Phiri, Texon, Navarro-Fernández, Íñigo, Román-Curto, Concepción, Mtenje, Hassani, Thauzeni, Gerald, Harawa, Elizabeth, Kaluzi, Stephano, Diere, Mphatso, Mkandawire, Mary, Malizani, Shaibu, Chifundo, Alex, Utrera-Busquets, Marta, Roncero-Riesco, Mónica, López Martín-Prieto, Sara, Vilanova-Urdániz, Iosune, Petiti, Gisela H., de Gálvez Aranda, María Victoria, No Pérez, Nuria, Rueda Gómez-Calcerrada, María, Iranzo, Pilar, Escalonilla García-Patos, Pilar, de Troya-Martín, Magdalena, Romero Gomez, Javier, Cardeñoso-Alvarez, Esther, Lucas Truyols, Sofia, Aspe Unanue, Libe, Bajo del Pozo, Cristina, Comunión Artieda, Alicia, Martínez González, Maria Isabel, López-López, Omar F., Moreno-Artero, Esther, Cubiró, Xavier, Meilán-Sánchez, Iago, Tomás-Velázquez, Alejandra, López-Sánchez, Cristina, Sánchez-Martínez, Eva M., Edwards, Harrison A., Herrera Morueco, Maria, Zehe Rubiera, Julia, Salguero Caldera, Laura, Blanes-Moreno, Urbano, Uribarren-Movilla, Maria, Marks, Michael

Unexposed populations and potential COVID-19 burden in European countries as of 21st November 2021. (2021) Chapman, Lloyd A C, Barnard, Rosanna C, Russell, Timothy W, Abbott, Sam, Van Zandvoort, Kevin, Davies, Nicholas G, Kucharski, Adam J

LloydChapman/COVID_homeless_modelling. (2021) Chapman, Lloyd A. C.

Comparison of COVID-19 vaccine prioritization strategies in the United States. (2021) Chapman, Lloyd A. C., Shukla, Poojan, Lo, Nathan C

mexhaz: Mixed Effect Excess Hazard Models. (2021) Charvat, Hadrien, Belot, Aurélien

francescochecchi/mortality_small_area_estimation. (2021) Checchi, Francesco, Testa, Adrienne, Gimma, Amy, Koum-Besson, Emilie, Warsame, Abdihamid

Response of Hyalomma marginatum to 20% DEET. (2021) Chen-hussey, Vanessa

Global health burden of ambient PM2.5 and the role of anthropogenic black carbon and organic aerosols. (2021) Chowdhury, Sourangsu, Pozzer, Andrea, Haines, Andrew, Klingmüller, Klaus, Münzel, Thomas, Paasonen, Pauli, Sharma, Arushi, Venkataraman, Chandra, Lelieveld, Jos

Anti-microbials in Society - Thailand, Study 2, 2017-2021. (2021) Chuengsatiansup, Komatra, Chawraingern, Sittichoke, Limsawart, Wirun, Urapeepathanapong, Thitima, Chanchamsang, Uravadee, Chandler, Clare

Raw data for a systematic review of statistical methodologies to evaluate progression of chronic kidney disease using electronic healthcare records. (2021) Cleary, Faye, Nitsch, Dorothea, Prieto, David

nfadai/Clements2021. (2021) Clements, Alastair J, Fadai, Nabil T

Forms of Care: Ethnographic Interviews About Palliative Care With Health Professionals in London, 2017-2021. (2021) Cohn, Simon, Borgstrom, Erica, Driessen, Annelieke, Dumble, Katie

R code for the paper "Probabilistic seasonal dengue forecasting in Vietnam: A modelling study using superensembles". (2021) Colón-González, Felipe J., Soares Bastos, Leonardo, Hofmann, Barbara, Hopkin, Alison, Harpham, Quillon, Crocker, Tom, Amato, Rosanna, Ferrario, Iacopo, Moschini, Francesca, James, Samuel, Malde, Sajni, Ainscoe, Eleanor, Sinh Nam, Vu, Quang Tan, Dang, Duc Khoa, Nguyen, Harrison, Mark, Tsarouchi, Gina, Lumbroso, Darren, Brady, Oliver J., Lowe, Rachel

Projecting the risk of mosquito-borne diseases in a warmer and more urbanised world: a multi-model multi-scenario intercomparison study. (2021) Colón-González, Felipe J, Sewe, Maquins Odhiambo, Tompkins, Adrian M, Sjödin, Henrik, Casallas, Alejandro, Rocklöv, Joacim, Caminade, Cyril, Lowe, Rachel

E-MTAB-8835 - Ribosome profiling of Mycobacterium tuberculosis under nutrient starvation. (2021) Cortes, Teresa

Additional file 1 of Symptoms in first-degree relatives of patients with rheumatoid arthritis: evaluation of cross-sectional data from the symptoms in persons at risk of rheumatoid arthritis (SPARRA) questionnaire in the PRe-clinical EValuation of Novel Targets in RA (PREVeNT-RA) Cohort. (2021) Costello, Ruth E., Humphreys, J. H., Sergeant, J. C., Haris, M., Stirling, F., Raza, K., van Schaardenburg, D., Bruce, Ian N.

Aid for reproductive, maternal, newborn and child health: data generated using the Muskoka2 method, 2002-2019. (2021) Countdown to 2030 Health Financing Data Analysis Centre

Muskoka2 estimates of aid for reproductive, maternal, newborn, and child health. (2021) Countdown to 2030 Health Financing Data Analysis Centre

Analysis for: The changing relationship between genetic risk and cognitive decline across birth cohorts. (2021) Courtin, Emilie, Greener, Robert, Weiss, Jordan, Ware, Erin B., Dowd, Jennifer B., Rehkopf, David

Patterns of non-communicable comorbidities at start of tuberculosis treatment in three regions of the Philippines: St-ATT cohort baseline data. (2021) Cox, Sharon, Faguer, Benjamin

St-ATT: The Starting Anti-Tuberculosis Treatment Cohort in the Philippines. (2021) Cox, Sharon, Faguer, Benjamin

Neurocognitive outcomes of HIV-associated tuberculous meningitis dataset. (2021) Cresswell, Fiona, Quinn, Carson

Serologically Defined Variations in Malaria Endemicity in Pará State, Brazil. Supplementary dataset. (2021) Cunha, Maristela G., Silva, Eliane S., Sepúlveda, Nuno, Costa, Sheyla P. T., Saboia, Tiago C., Guerreiro, João F., Póvoa, Marinete M., Corran, Patrick H., Riley, Eleanor, Drakeley, Chris J.

D

Additional file 1 of Improving malaria preventive practices and pregnancy outcomes through a health education intervention: A randomized controlled trial. (2021) Dahiru Balami, Ahmed, Said, Salmiah Md., Zulkefli, Nor Afiah Mohd, Norsa’adah, Bachok, Audu, Bala

Getting close to nature – Plasmodium knowlesi reference genome sequences from contemporary clinical isolates. (2021) Damilola R. Oresegun, Peter Thorpe, Benavente, Ernest, Campino, Susana, Fauzi Muh, Moon, Robert W., Clark, Taane, Cox-Singh, Janet

Clinical codelist - CPRD Aurum - hypertension. (2021) Davidson, Jennifer

Clinical codelist - CPRD Aurum - major adverse cardiovascular event. (2021) Davidson, Jennifer

Clinical codelist - CPRD GOLD - Hypertension. (2021) Davidson, Jennifer

Clinical codelist - CPRD GOLD - Major Adverse Cardiovascular Event. (2021) Davidson, Jennifer

Clinical codelist - HES - Major Adverse Cardiovascular Event. (2021) Davidson, Jennifer

Clinical codelist - Hypertension. (2021) Davidson, Jennifer

Therapy codelist - CPRD Aurum - Statins. (2021) Davidson, Jennifer

Therapy codelist - CPRD Aurum - antihypertensives. (2021) Davidson, Jennifer

Therapy codelist - CPRD Aurum - antiplatelets. (2021) Davidson, Jennifer

Therapy codelist - CPRD GOLD - Statins. (2021) Davidson, Jennifer

jenAdavidson/cvrisk_mace_ari. (2021) Davidson, Jennifer A.

Clinical codelist - CPRD Gold - HIV. (2021) Davidson, Jennifer A., Warren-Gash, Charlotte, Mcdonald, Helen

Clinical codelist - CPRD Aurum - acute respiratory infection and influenza/influenza-like-illness codes. (2021) Davidson, Jennifer, Warren-Gash, Charlotte

Clinical codelist - CPRD Aurum - asthma. (2021) Davidson, Jennifer, Warren-Gash, Charlotte

Clinical codelist - CPRD Aurum - chronic neurological disease. (2021) Davidson, Jennifer, Warren-Gash, Charlotte

Clinical codelist - CPRD GOLD - Asthma. (2021) Davidson, Jennifer, Warren-Gash, Charlotte

Clinical codelist - CPRD GOLD - acute respiratory infection and influenza/influenza-like-illness codes. (2021) Davidson, Jennifer, Warren-Gash, Charlotte

Clinical codelist - CPRD GOLD - chronic neurological disease. (2021) Davidson, Jennifer, Warren-Gash, Charlotte

Clinical codelist - Dementia. (2021) Davidson, Jennifer, Warren-Gash, Charlotte

Clinical codelist - HES - acute respiratory infection and influenza/influenza-like-illness codes. (2021) Davidson, Jennifer, Warren-Gash, Charlotte

Therapy codelist - CPRD Aurum - Asthma. (2021) Davidson, Jennifer, Warren-Gash, Charlotte

Therapy codelist - CPRD GOLD - Asthma. (2021) Davidson, Jennifer, Warren-Gash, Charlotte

Codelists for: "The effect of influenza vaccine on acute cardiovascular events in people with varying cardiovascular risk: a self-controlled case-series study in England, 2008-2019". (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Banerjee, Ami, McDonald, Helen, Smeeth, Liam

Clinical codelist - CPRD Aurum - cardiovascular disease. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Banerjee, Ami, Smeeth, Liam

Clinical codelist - CPRD GOLD - cardiovascular disease. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Banerjee, Ami, Smeeth, Liam

Clinical codelist - Cerebrovascular disease. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Banerjee, Ami, Smeeth, Liam, Evans, Dai, Clay, Simon

Clinical codelist - Chronic cardiac disease. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Banerjee, Ami, Smeeth, Liam, Evans, Dai, Clay, Simon

Clinical codelist - learning disabilities. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Cadogan, Sharon

Clinical codelist - Asthma. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Gayle, Alicia, Strongman, Helen, Nissen, Francis, LSHTM Electronic Health Record team

Clinical codelist - CPRD Gold - permanent immunodeficiency conditions. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, McDonald, Helen

Clinical codelist - CPRD Gold - solid organ transplant. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, McDonald, Helen

Therapy codelist - CPRD Gold - immunosuppressants. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, McDonald, Helen

Clinical codelist - CPRD Aurum - Immuosuppressive conditions. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Mcdonald, Helen

Clinical codelist - CPRD Aurum - chronic kidney disease. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Mcdonald, Helen

Clinical codelist - CPRD Aurum - chronic liver disease. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Mcdonald, Helen

Clinical codelist - CPRD Aurum - chronic respiratory disease. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Mcdonald, Helen

Clinical codelist - CPRD Aurum - spleen dysfunction. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Mcdonald, Helen

Clinical codelist - CPRD GOLD - Immuosuppressive conditions. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Mcdonald, Helen

Clinical codelist - CPRD GOLD - Influenza vaccine. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Mcdonald, Helen

Clinical codelist - CPRD GOLD - Pneumococcal vaccine. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Mcdonald, Helen

Clinical codelist - CPRD GOLD - chronic liver disease. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Mcdonald, Helen

Clinical codelist - CPRD GOLD - chronic respiratory disease. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Mcdonald, Helen

Clinical codelist - CPRD GOLD - spleen dysfunction. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Mcdonald, Helen

Clinical codelist - CPRD Gold - aplastic anaemia. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Mcdonald, Helen

Clinical codelist - CPRD Gold - bone marrow or stem cell transplant. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Mcdonald, Helen

Clinical codelist - CPRD Gold - chemotherapy and radiotherapy. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Mcdonald, Helen

Clinical codelist - CPRD Gold - other immunodeficiency conditions. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Mcdonald, Helen

Clinical codelist - chronic liver disease. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Mcdonald, Helen

Therapy codelist - CPRD Aurum - Diabetes. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Mcdonald, Helen

Therapy codelist - CPRD Aurum - Immunosuppressants. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Mcdonald, Helen

Therapy codelist - CPRD GOLD - Immunosuppressants. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Mcdonald, Helen

Therapy codelist - CPRD GOLD - Pneumococcal vaccine. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Mcdonald, Helen

Therapy codelist - CPRD Gold - oral steroids. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Mcdonald, Helen

Codelists for: "Factors associated with excess mortality in the first wave of COVID-19 pandemic in the UK: a cohort analysis using the Clinical Practice Research Databank". (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Mcdonald, Helen, Banerjee, Ami, Gayle, Alicia, Strongman, Helen, Evans, Dai, Clay, Simon, Forbes, Harriet, Mansfield, Kathryn E., Carreira, Helena, Bhaskaran, Krishnan, Bhate, Ketaki, Smeeth, Liam, Dedman, Daniel, Mathur, Rohini, Cadogan, Sharon, LSHTM EHR team

Clinical codelist - CPRD Aurum - diabetes. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Mcdonald, Helen, Banerjee, Ami, Smeeth, Liam

Clinical codelist - CPRD GOLD - Diabetes. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Mcdonald, Helen, Banerjee, Ami, Smeeth, Liam

Therapy codelist - CPRD GOLD - Diabetes. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Mcdonald, Helen, Banerjee, Ami, Smeeth, Liam

Clinical codelist - Diabetes. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Mcdonald, Helen, Banerjee, Ami, Smeeth, Liam, Evans, Dai, Clay, Simon

Codelists for: "Underlying cardiovascular risk and major adverse cardiovascular events after acute respiratory infection: a population-based cohort study of over 4.2 million individuals in England, 2008-2018". (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Mcdonald, Helen, Banerjee, Ami, Smeeth, Liam, Strongman, Helen

Codelists for: "Ethnic differences in the incidence of clinically diagnosed influenza: an England population-based cohort study 2008-2018". (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Mcdonald, Helen, Banerjee, Ami, Smeeth, Liam, Strongman, Helen, Cadogan, Sharon

Clinical codelist - chronic kidney disease. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Mcdonald, Helen, Evans, Dai, Clay, Simon

Clinical codelists - Immunosuppression. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Mcdonald, Helen, Evans, Dai, Clay, Simon

Clinical codelist - Chronic respiratory disease other than asthma. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Mcdonald, Helen, Gayle, Alicia, Evans, Dai, Clay, Simon

Clinical codelist - CPRD Aurum - Pneumococcal vaccine. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Mcdonald, Helen, Smeeth, Liam, Banerjee, Ami

Therapy codelist - CPRD Aurum - Influenza vaccine. (2021) Davidson, Jennifer, Warren-Gash, Charlotte, Mcdonald, Helen, Smeeth, Liam, Banerjee, Ami

Clinical codelist - chronic neurological conditions other than dementia. (2021) Davidson, Jennifer, Warren-gash, Charlotte, LSHTM Electronic Health Records team

Clinical codelist - chronic liver disease. (2021) Davidson, Jennifer, Warren-gash, Charlotte, Mcdonald, Helen, Evans, Dai, Clay, Simon

CSV-format data for: Increased mortality in community-tested cases of SARS-CoV-2 lineage B.1.1.7. (2021) Davies, Nicholas G.

nicholasdavies/amr-competition-diversity: Full release for publication. (2021) Davies, Nicholas G.

Analysis data and code for "Estimated transmissibility and impact of SARS-CoV-2 Variant of Concern 202012/01 in England". (2021) Davies, Nicholas G., Abbott, Sam, Barnard, Rosanna C., Jarvis, Christopher I., Kucharski, Adam J., Munday, James, Pearson, Carl A. B., Russell, Timothy W., Tully, Damien C., Washburne, Alex D., Wenseleers, Tom, Gimma, Amy, Waites, William, Wong, Kerry LM, van Zandvoort, Kevin, Silverman, Justin D., Diaz-Ordaz, Karla, Keogh, Ruth, Eggo, Rosalind M., Funk, Sebastian, Jit, Mark, Atkins, Katherine E., Edmunds, W. John

Analysis data and code for "Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England". (2021) Davies, Nicholas G., Abbott, Sam, Barnard, Rosanna C., Jarvis, Christopher I., Kucharski, Adam J., Munday, James, Pearson, Carl A. B., Russell, Timothy W., Tully, Damien C., Washburne, Alex D., Wenseleers, Tom, Gimma, Amy, Waites, William, Wong, Kerry LM, van Zandvoort, Kevin, Silverman, Justin D., Diaz-Ordaz, Karla, Keogh, Ruth, Eggo, Rosalind M., Funk, Sebastian, Jit, Mark, Atkins, Katherine E., Edmunds, W. John

Increased mortality in community-tested cases of SARS-CoV-2 lineage B.1.1.7. (2021) Davies, Nicholas G., Jarvis, Christopher I., CMMID COVID-19 Working Group, Edmunds, W. John, Jewell, Nicholas P., Diaz-Ordaz, Karla, Keogh, Ruth H.

Global intent to accept COVID-19 vaccines. (2021) De Figueiredo, Alex

Impact of vaccine passports on inclination to accept COVID-19 vaccinations in the UK. (2021) De figueiredo, Alex

Clinical codelist - Cancer. (2021) Dedman, Daniel, Carreira, Helena, Strongman, Helen

EIDECDIA/China_influenza_seasonality. (2021) Diamond, Charlie, Gong, Hui, Sun, Fiona Yueqian, Liu, Yang, Quilty, Billy, Jit, Mark, Yang, Juan, Yu, Hongjie, Edmunds, W. John, Baguelin, Marc

petedodd/NotTB. (2021) Dodd, Peter J

Supplemental material for: The Long and Winding Road: Archiving and Re-Using Qualitative Data from 12 Research Projects Spanning 16 Years. (2021) Dodds, Catherine, Keogh, Peter, Bourne, Adam, McDaid, Lisa, Squire, Corinne, Weatherburn, Peter, Young, Ingrid

Genomic contextualisation of ancient DNA molecular data from an Argentinian fifth pandemic Vibrio cholerae infection. (2021) Dorman, Matthew, Thomson, Nicholas R., Campos, Josefina

Supporting data for "Genomic contextualisation of ancient DNA molecular data from an Argentinian fifth pandemic Vibrio cholerae infection". (2021) Dorman, Matthew, Thomson, Nicholas R., Campos, Josefina

Raw data for: "Evaluating a large-scale online behaviour change intervention aimed at wildlife product consumers in Singapore". (2021) Doughty, Hunter, Milner-Gulland, E. J., Lee, Janice Ser Huay, Oliver, Kathryn, Carrasco, L. Roman, Veríssimo, Diogo

yangclaraliu/armslist_scraping. (2021) Drake, Coleman, Hernandez, Ashley, Liu, Yang, Schwartz, Adam H., Sundaram, Maria

Allocare project. (2021) Du, Juan, Page, Abigail E., Mace, Ruth

E

Evaluating spatiotemporal dynamics of snakebite in Sri Lanka: Monthly incidence mapping from a national representative survey sample. S1 Data. (2021) Ediriweera, Dileepa Senajith, Kasthuriratne, Anuradhani, Pathmeswaran, Arunasalam, Gunawardene, Nipul Kithsiri, Jayamanne, Shaluka Francis, Murray, Kris, Iwamura, Takuya, Isbister, Geoffrey, Dawson, Andrew, Lalloo, David Griffith, de Silva, Hithanadura Janaka, Diggle, Peter John

akira-endo/schooldynamics_FluMatsumoto14-15: Within and between classroom transmission patterns of seasonal influenza among primary school students in Matsumoto city, Japan. (2021) Endo, Akira, Uchida, Mitsuo, Hayashi, Naoki, Liu, Yang, Atkins, Katherine E., Kucharski, Adam J., Funk, Sebastian

Management of at-risk mothers and infants < 6 months in national and international SAM guidelines: AGREE scoring of guidelines and guideline content spreadsheet. (2021) Engl, Magdalena, Kerac, Marko

Presence of recommendations for the management of malnourished children living with disabilities in national and international SAM guidelines: Interview transcripts and guideline content spreadsheet. (2021) Engl, Magdalena, Kerac, Marko

Qualitative Data on Integrating Social Science in Community Engagement for Vaccine Hesitancy in Sierra Leone, 2019-2020. (2021) Enria, Luisa

Trust and Transparency in times of Crisis: Results from an Online Survey During the First Wave (April 2020) of the COVID-19 Epidemic in the UK - Quantitative Data. (2021) Enria, Luisa, Waterlow, Naomi, Rogers, Nina, Brindle, Hannah, Lal, Sham, Eggo, Rosalind M., Lees, Shelley, Roberts, Chrissy

Data collection tools for: "Public attitudes to, and behaviours taken during, hot weather by vulnerable groups: results from a national survey in England.". (2021) Erens, Bob, Williams, Lorraine, Exley, Josephine, Ettelt, Stefanie, Manacorda, Tommaso, Hajat, Shakoor, Mays, Nicholas

Analysis of changes in worldwide routine immunisation coverage in 2020. (2021) Evans, Bethany, Jombart, Thibaut

Impact of baseline cases of cough and fever on UK COVID-19 diagnostic testing rates: estimates from the Bug Watch community cohort study - Supplementary material, code and data. (2021) Eyre, Max T., Burns, Rachel, Kirkby, Victoria, Smith, Catherine, Denaxas, Spiros, Nguyen, Vincent, Hayward, Andrew, Shallcross, Laura, Fragaszy, Ellen, Aldridge, Robert W.

F

Data for Preventing Violence Against Children in Schools (PVACS) main trial analyses. (2021) Fabbri, Camilla, Leurent, Baptiste

Search strategies for: Whole-school interventions promoting student commitment to school to prevent substance abuse and violence and improve educational attainment. (2021) Falconer, Jane, Bonell, Chris

Supporting data for "chiA and gbpA genes are not uniformly distributed amongst diverse Vibrio cholerae". (2021) Fennell, Thea G., Blackwell, Grace A., Thomson, Nicholas R., Dorman, Matthew J.

gbpA and chiA genes are not uniformly distributed amongst diverse Vibrio cholerae. (2021) Fennell, Thea G., Blackwell, Grace A., Thomson, Nicholas R., Dorman, Matthew J.

Adjunctive host-directed therapies for pulmonary tuberculosis: data from a prospective, open-label, phase 2, randomised controlled trial. (2021) Fielding, Katherine

Data set for describing resistance and identifying risk factors for resistance to Mycobacterium tuberculosis, among highly TB exposed gold miners in South Africa. (2021) Fielding, Katherine

Dataset and R code for article "Topical emollient therapy with sunflower seed oil alters the skin microbiota of young children with severe acute malnutrition in Bangladesh: a randomised, controlled study". (2021) Fischer, Natalie, Darmstadt, Gary L, Shahunja, KM, Crowther, Jonathan M, Kendall, Lindsay, Gibson, Rachel A, Ahmed, Tahmeed, Relman, David A

High-throughput low-cost nl-qPCR for enteropathogen detection: A proof-of-concept among hospitalized patients in Bangladesh. S1 Dataset. (2021) Flaherty, Katelyn E, Grembi, Jessica A, Ramachandran, Vasavi V, Haque, Farhana, Khatun, Selina, Rahman, Mahmudu, Maples, Stace, Becker, Torben K, Spormann, Alfred M, Schoolnik, Gary K, Hryckowian, Andrew J, Nelson, Eric J

Clinical codelist - CPRD Gold - haematological malignancies. (2021) Forbes, Harriet

Clinical codelist - CPRD Gold - herpes zoster. (2021) Forbes, Harriet

Risk factor codelist - smoking. (2021) Forbes, Harriet

Therapy codelist - Antiviral codes for zoster treatment. (2021) Forbes, Harriet

Therapy codelist - CPRD Gold - topical eye antibiotics. (2021) Forbes, Harriet

Therapy codelist - CPRD Gold - topical eye antivirals. (2021) Forbes, Harriet

Risk factor codelist - Body Mass Index (BMI). (2021) Forbes, Harriet, Carreira, Helena

Clinical codelist - CPRD Gold - chronic obstructive pulmonary disease. (2021) Forbes, Harriet, Strongman, Helen

TheYongjinChoi/NYS-COVID19-Disparities-Survey. (2021) Fox, Ashley, Choi, Yongjin

Systemic PFOS and PFOA exposure and disturbed lipid homeostasis in humans: what do we know and what not? (2021) Fragki, Styliani, Dirven, Hubert, Fletcher, Tony, Grasl-Kraupp, Bettina, Bjerve Gützkow, Kristine, Hoogenboom, Ron, Kersten, Sander, Lindeman, Birgitte, Louisse, Jochem, Peijnenburg, Ad, Piersma, Aldert H., Princen, Hans M. G., Uhl, Maria, Westerhout, Joost, Zeilmaker, Marco J., Luijten, Mirjam

lshtm-vimc/dynamice. (2021) Fu, Han, Abbas, Kaja M.

Study database for: "Adverse pregnancy outcomes are associated with Plasmodium vivax malaria in a prospective cohort of women from the Brazilian Amazon". (2021) Fuehrer, Hans-Peter, Dombrowski, Jamille Gregório, Barateiro, André, Peixoto, Erika Paula Machado, Barros, André Boler Cláudio da Silva, Souza, Rodrigo Medeiros de, Clark, Taane Gregory, Campino, Susana, Wrenger, Carsten, Wunderlich, Gerhard, Palmisano, Giuseppe, Epiphanio, Sabrina, Gonçalves, Lígia Antunes, Marinho, Claudio Romero Farias

Consolidated results of dogs in the 2018 and 2019 studies. (2021) Fujisawa, Kyoko, Silcott-Niles, Charlotte, Simonson, Poppy, Lamattina, Daniela, Humeres, Cristian A., Bhattacharyya, Tapan, Mertens, Pascal, Thunissen, Caroline, O’Rourke, Victoria, Pańczuk, Magdalena, Whitworth, James A., Salomón, Oscar Daniel, Miles, Michael A.

G

Austerity and the rise of the nazi party. (2021) Galofré-Vilà, Gregori, Meissner, Christopher M., Mckee, Martin, Stuckler, David

Extremely high SARS-CoV-2 seroprevalence in a strictly-Orthodox Jewish community in the UK. (2021) Gaskell, Katherine M., Johnson, Marina, Gould, Victoria, Hunt, Adam, Stone, Neil RH, Waites, William, Kasstan, Ben, Chantler, Tracey, Lal, Sham, Roberts, Chrissy h., Goldblatt, David, Eggo, Rosalind M., Marks, Michael

rorygibb/pathogen_discovery: Viral discovery Biology Letters code. (2021) Gibb, Rory, Mollentze, Nardus

cmmid/uk_movement_communities_covid. (2021) Gibbs, Hamish

hamishgibbs/ghana_rt_npi_mobility. (2021) Gibbs, Hamish

uk_tier_data. (2021) Gibbs, Hamish, Jarvis, Christopher I., Eggo, Rosalind M.

Population disruption: estimating changes in population distribution in the UK during the COVID-19 pandemic - Estimates for Local Authority Districts. (2021) Gibbs, Hamish, Waterlow, Naomi R., Cheshire, James, Danon, Leon, Liu, Yang, Grundy, Chris, Kucharski, Adam J., Eggo, Rosalind M.

Table_1_Probing Differences in Gene Essentiality Between the Human and Animal Adapted Lineages of the Mycobacterium tuberculosis Complex Using TnSeq.XLSX. (2021) Gibson, Amanda J., Passmore, Ian J., Faulkner, Valwynne, Xia, Dong, Nobeli, Irene, Stiens, Jennifer, Willcocks, Sam, Clark, Taane G., Sobkowiak, Ben, Werling, Dirk, Villarreal-Ramos, Bernardo, Wren, Brendan W., Kendall, Sharon L.

amygimma/comix_uk_summary_analysis. (2021) Gimma, Amy

CoMix social contact data (Austria). (2021) Gimma, Amy, Wong, Kerry LM, Coletti, Pietro, Jarvis, Christopher I.

CoMix social contact data (France). (2021) Gimma, Amy, Wong, Kerry LM, Coletti, Pietro, Jarvis, Christopher I.

CoMix social contact data (Italy). (2021) Gimma, Amy, Wong, Kerry LM, Coletti, Pietro, Jarvis, Christopher I.

CoMix social contact data (Poland). (2021) Gimma, Amy, Wong, Kerry LM, Coletti, Pietro, Jarvis, Christopher I.

CoMix social contact data (Portugal). (2021) Gimma, Amy, Wong, Kerry LM, Coletti, Pietro, Jarvis, Christopher I.

CoMix social contact data (Spain). (2021) Gimma, Amy, Wong, Kerry LM, Coletti, Pietro, Jarvis, Christopher I.

CoMix social contact data (UK). (2021) Gimma, Amy, Wong, Kerry LM, Van Xandvoort, Kevin, Jarvis, Christopher I., Edmunds, W. John

CoMix social contact data (Denmark). (2021) Gimma, Amy, Wong, Kerry Lm, Coletti, Pietro, Jarvis, Christopher I.

CoMix social contact data (Greece). (2021) Gimma, Amy, Wong, Kerry Lm, Coletti, Pietro, Jarvis, Christopher I.

CoMix social contact data (Slovenia). (2021) Gimma, Amy, Wong, Kerry Lm, Coletti, Pietro, Jarvis, Christopher I.

Data supporting "A Snapshot of the Practicality of, and Barriers to, Implementation of COVID-19 Interventions: Public Health and Healthcare Workers' Perceptions". (2021) Glazik, Rosanna

Identification of Reduced Host Transcriptomic Signatures for Tuberculosis Disease and Digital PCR-Based Validation and Quantification. (2021) Gliddon, Harriet D., Kaforou, Myrsini, Alikian, Mary, Habgood-Coote, Dominic, Zhou, Chenxi, Oni, Tolu, Anderson, Suzanne T., Brent, Andrew J., Crampin, Amelia C., Eley, Brian, Heyderman, Robert, Kern, Florian, Langford, Paul R., Ottenhoff, Tom H. M., Hibberd, Martin L., French, Neil, Wright, Victoria J., Dockrell, Hazel M., Coin, Lachlan J., Wilkinson, Robert J., Levin, Michael

Data for: “BCG revaccination in Malawi: 30-year follow-up of a large, randomised, double-blind placebo-controlled trial”. (2021) Glynn, Judith R., Fielding, Katherine, Mzembe, Themba, Sichali, Lifted, Banda, Louis, Mclean, Estelle, Kanjala, Chifundo, Crampin, Amelia C., Ponnighaus, Jorg, Warndorff, David, Fine, Paul

Data for: "Estimation of country-level incidence of early-onset invasive Group B Streptococcus disease in infants using Bayesian methods". (2021) Goncalves, Bronner

Evaluation of multi-assay algorithms for identifying individuals with recent HIV infection: HPTN 071 (PopART). Minimum dataset, seroconverters. (2021) Grant-McAuley, Wendy, Klock, Ethan, Laeyendecker, Oliver, Piwowar-Manning, Estelle, Wilson, Ethan, Clarke, William, Breaud, Autumn, Moore, Ayana, Ayles, Helen, Kosloff, Barry, Shanaube, Kwame, Bock, Peter, Mandla, Nomtha, van Deventer, Anneen, Fidler, Sarah, Donnell, Deborah, Hayes, Richard, Eshleman, Susan H.

Software and results for: An agent-based model for simulating the impact of social norms on active commuting interventions. (2021) Greener, Robert, Lewis, Daniel, Reades, Jon, Miles, Simon, Cummins, Steven

WINRATIOTEST: Stata module to calculate the unmatched Win Ratio for prioritised outcomes. (2021) Gregson, John, Collier, Timothy

Additional file 1 of GenTB: A user-friendly genome-based predictor for tuberculosis resistance powered by machine learning. (2021) Gröschel, Matthias I., Owens, Martin, Freschi, Luca, Vargas, Roger, Marin, Maximilian G., Phelan, Jody, Iqbal, Zamin, Dixit, Avika, Farhat, Maha R.

Profile of the organisms selected for sequencing. (2021) Guevara, Paula Diaz, Maes, Mailis, Thanh, Duy Pham, Duarte, Carolina, Rodriguez, Edna Catering, Montaño, Lucy Angeline, Dan, Thanh Ho Ngoc, Nguyen, To Nguyen Thi, Carey, Megan E, Campos, Josefina, Chinen, Isabel, Perez, Enrique, Baker, Stephen

H

Community engagement in the prevention and control of COVID-19: Insights from Vietnam. Qualitative transcripts. (2021) Ha, Bui Thi Thu, Ngoc Quang, La, Quoc Thanh, Pham, Duc, Duong Minh, Mirzoev, Tolib, Bui, Thi My Anh

Overall data including separate worksheets for genotypic resistance and species genotypes; host blood meal and sporozoite positivity data. (2021) Hamid-Adiamoh, Majidah, Nwakanma, Davis, Assogba, Sessinou Benoit, Ndiath, Mamadou Ousmane, D'Alessandro, Umberto, Afrane, Yaw A., Amambua-Ngwa, Alfred

lshtm-tbmg/natcomms-m72sa: Nat Comms - code. (2021) Harris, Rebecca C, Quaife, Matthew, Weerasuriya, Chathika Krishan, Gomez, Gabriela B, Sumner, Tom, Bozzani, Fiammetta, White, Richard G

Codelists for: "Understanding thresholds of blood pressure and predicted cardiovascular disease risk in guiding blood pressure treatment: a cohort study in English primary care". (2021) Herrett, Emily

r-spatialecology/shar. (2021) Hesselbarth, Maximilian, actions-user, Sciaini, Marco, Hereñú, Darío, Gruson, Hugo, Etherington, Thomas

Genome assemblies and pan-genome data for 328 clinical isolates of Klebsiella pneumoniae species complex, representing one year of infections diagnosed in a hospital diagnostic lab. (2021) Holt, Kathryn E., Gorrie, Claire, Wyres, Kelly

katholt/sonneityping: v20210201. (2021) Holt, Kathryn E., Hawkey, Jane, Paranagama, Kalani

Additional file 1 of Healthcare provider and pregnant women’s perspectives on the implementation of intermittent screening and treatment with dihydroartemisinin–piperaquine for malaria in pregnancy in western Kenya: a qualitative study. (2021) Hoyt, Jenna, Hill, Jenny, Achieng, Florence, Ouma, Peter, Kariuki, Simon, Desai, Meghna, Webster, Jayne

Additional file 2 of Healthcare provider and pregnant women’s perspectives on the implementation of intermittent screening and treatment with dihydroartemisinin–piperaquine for malaria in pregnancy in western Kenya: a qualitative study. (2021) Hoyt, Jenna, Hill, Jenny, Achieng, Florence, Ouma, Peter, Kariuki, Simon, Desai, Meghna, Webster, Jayne

I

katholt/srst2. (2021) Inouye, Michael, Dashnow, Harriet, Pope, Bernie, Wick, Ryan, Holt, Kathryn E.

Samvedana Plus: Reducing Violence and Increasing Condom Use in the Intimate Partnerships of female Sex Workers in Bagalkote District, North Karnataka, South India. (2021) Isac, Shajy, Javalkar, Prakash, Platt, Lucy, Watts, Charlotte, Heise, Lori

J

ReproducibiliTea LSHTM. (2021) Jaquiery, Matt, Schultze, Anna

jarvisc1/comix_uk_covid_restrictions. (2021) Jarvis, Christopher

jarvisc1/2020-reporting. (2021) Jarvis, Christopher I., Jombart, Thibaut

Table S2. from Evidence for natural hybridization and novel Wolbachia strain superinfections in the Anopheles gambiae complex from Guinea. (2021) Jeffries, Claire L., Cansado-Utrilla, Cintia, Beavogui, Abdoul H., Stica, Caleb, Lama, Eugene Kaman, Kristan, Mojca, Irish, Seth R., Walker, Thomas

Additional file 1 of ‘Too old to test?’: A life course approach to HIV-related risk and self-testing among midlife-older adults in Malawi. (2021) Johnson, Cheryl, Kumwenda, Moses, Meghji, Jamilah, Choko, Augustine T., Phiri, Mackwellings, Hatzold, Karin, Baggaley, Rachel, Taegtmeyer, Miriam, Terris-Prestholt, Fern, Desmond, Nicola, Corbett, Elizabeth L.

SungmokJung/Projection_Japan_COVID19 v1.0.0. (2021) Jung, Sung-mok, Endo, Akira, Kinoshita, Ryo, Nishiura, Hiroshi

K

The hidden financial burden of healthcare: a systematic literature review of informal payments in Sub-Saharan Africa. (2021) Kabia, Evelyn, Goodman, Catherine, Balabanova, Dina, Molyneux, Sassy, Barasa, Edwine

Additional file 1 of Barriers to and enablers of uptake of antiretroviral therapy in integrated HIV and tuberculosis treatment programmes in sub-Saharan Africa: a systematic review and meta-analysis. (2021) Kadia, Benjamin Momo, Dimala, Christian Akem, Fongwen, Noah T., Smith, Adrian D.

Additional file 1 of Youths’ perceptions of community health workers’ delivery of family planning services: a cross-sectional, mixed-methods study in Nakaseke District, Uganda. (2021) Kalyesubula, Robert, Pardo, Jessica Mitter, Yeh, Stephanie, Munana, Richard, Weswa, Ivan, Adducci, Joseph, Nassali, Faith, Tefferi, Mennen, Mundaka, John, Burrowes, Sahai

Replication Data for: Malaria hospitalisation in East Africa: age, phenotype and transmission intensity. (2021) Kamau, Alice, Paton, Robert S., Akech, Samuel, Mpimbaza, Arthur, Khazenzi, Cynthia, Ogero, Morris, Mumo, Eda, Alegana, Victor A., Agweyu, Ambrose, Mturi, Neema, Mohammed, Shebe, Bigogo, Godfrey, Audi, Allan, Kapisi, James, Sserwanga, Asadu, Namuganga, Jane F., Kariuki, Simon, Otieno, Nancy A., Nyawanda, Bryan O., Olotu, Ally, Salim, Nahya, Athuman, Thabit, Abdulla, Salim, Mohamed, Amina F., Mtove, George, Reyburn, Hugh, Gupta, Sunetra, Lourenço, José, Bejon, Philip, Snow, Robert W.

Blood pressure levels among children in rural Uganda: results from 1,913 children in a general population survey. (2021) Kansiime, Sheila

Lived experiences of frontline healthcare providers offering maternal and newborn services amidst the novel corona virus disease 19 pandemic in Uganda: A qualitative study. S1 Dataset. (2021) Kayiga, Herbert, Genevive, Diane Achanda, Amuge, Pauline Mary, Ssemata, Andrew Sentoogo, Nanzira, Racheal Samantha, Nakimuli, Annettee

Additional file 1 of The household financial burden of non-communicable diseases in low- and middle-income countries: a systematic review. (2021) Kazibwe, Joseph, Tran, Phuong Bich, Annerstedt, Kristi Sidney

Support files for: "Electronic data collection, management and analysis tools used for outbreak response in low- and middle-income countries: a systematic review and stakeholder survey". (2021) Keating, Patrick, Murray, Jillian, Schenkel, Karl, Merson, Laura, Seale, Anna

Additional file 2 of Complex emergencies and the control and elimination of neglected tropical diseases in Africa: developing a practical approach for implementing safe and effective mapping and intervention strategies. (2021) Kelly-Hope, Louise A., Sanders, Angelia M., Harding-Esch, Emma, Willems, Johan, Ahmed, Fatima, Vincer, Fiona, Hill, Rebecca

Additional file 3 of Complex emergencies and the control and elimination of neglected tropical diseases in Africa: developing a practical approach for implementing safe and effective mapping and intervention strategies. (2021) Kelly-Hope, Louise A., Sanders, Angelia M., Harding-Esch, Emma, Willems, Johan, Ahmed, Fatima, Vincer, Fiona, Hill, Rebecca

knowah/bssnper2. (2021) Kessler, Noah J.

Survey data on willingness to participate in COVID-19 vaccine trials among healthcare workers in three Ugandan hospitals. (2021) Kitonsa, Jonathan, Kamacooko, Onesmus, Bahemuka, Ubaldo M., Kibengo, Freddie, Kakande, Ayoub, Wajja, Anne, Basajja, Vincent, Lumala, Alfred, Ssemwanga, Edward, Asaba, Robert, Mugisha, Joseph, Pierce, Benjamin F., Shattock, Robin, Kaleebu, Pontiano, Ruzagira, Eugene

gwenknight/hai_first_wave. (2021) Knight, Gwen

Source data for "Date of introduction and epidemiologic patterns of SARS-CoV-2 in Mogadishu, Somalia: estimates from transmission modelling of satellite-based excess mortality data in 2020". (2021) Koltai, Mihaly

mbkoltai/covid_lmic_model: Model fitting excess mortality data in Mogadishu v1.0. (2021) Koltai, Mihaly

Datasets and code for "Mapping the plague through natural language processing". (2021) Krauer, Fabienne, Schmid, Boris V.

Durations of asymptomatic, symptomatic, and care-seeking phases of tuberculosis disease with a Bayesian analysis of prevalence survey and notification data. (2021) Ku, Chu-Chang, MacPherson, Peter, Khundi, McEwen, Nzawa Soko, Rebecca H., Feasey, Helena R. A., Nliwasa, Marriott, Horton, Katherine C., Corbett, Elizabeth L., Dodd, Peter J.

adamkucharski/covid-import-model. (2021) Kucharski, Adam J.

Social and Economic Impact of Congenital Zika Syndrome questionnaire. (2021) Kuper, Hannah

L

Clinical codelist - Venous thromboembolism. (2021) LSHTM Electronic Health Research team

LSHTM Data Compass Procedures. (2021) LSHTM Library & Archives Service

Comparable exposure to SARS-CoV-2 in young children and healthcare workers in Zambia. (2021) Laban, Natasha

ropensci/drake. (2021) Landau, Will, Landau, Will, Bond-Lamberty, Ben, Strasiotto, Matthew, McBain, Miles, Müller, Kirill, Mahr, TJ, Hughes, Ellis, Ross, Noam, Bell, Kendon, Ingerson, Sean, Aden-Buie, Garrick, Gomolka, Matthias, Knoblauch, Nicholas, Albers, Sam, brendanf, evalparse, Denney, Bill, Muir, Chris, Barrett, Malcolm, Krug, Rainer M, Kehayas, Vassilis, Schratz, Patrick, Zhao, Bruce, Hlynur, Gruson, Hugo, Jasper, Ooms, Jeroen, Walthert, Lorenz, Dray, Matt

Additional file 1 of Epigenetic modelling of former, current and never smokers. (2021) Langdon, Ryan J, Yousefi, Paul, Relton, Caroline L, Suderman, Matthew J

Additional file 4 of Epigenetic modelling of former, current and never smokers. (2021) Langdon, Ryan J, Yousefi, Paul, Relton, Caroline L, Suderman, Matthew J

Data for: "A synbiotic intervention modulates meta-omics signatures of gut redox potential and acidity in elective caesarean born infants". (2021) Lay, Christophe, Chu, Collins Wenhan, Purbojati, Rikky Wenang, Acerbi, Enzo, Drautz-Moses, Daniela I., de Sessions, Paola Florez, Jie, Song, Ho, Eliza, Kok, Yee Jiun, Bi, Xuezhi, Chen, Shuwen, Mak, Shi Ya, Chua, Mei Chien, Goh, Anne E. N., Chiang, Wen Chin, Rao, Rajeshwar, Chaithongwongwatthana, Surasith, Khemapech, Nipon, Chongsrisawat, Voranush, Martin, Rocio, Koh, Yanqing, Lohar, Sachin R., Tan, Ivan Chin Hin, Anng, Wong Anng, Jie, Chen, Bartke, Nana, Ben-Amor, Kaouther, Renes, Ingrid B., Wong, Fiona, Roeselers, Guus, Ho, Ying Swan, Hibberd, Martin L., Schuster, Stephan C., Knol, Jan

qleclerc/COVID_bed_occupancy. (2021) Leclerc, Quentin J.

Data and R code to accompany 'Spatial connectivity in mosquito-borne disease models: a systematic review of methods and assumptions'. (2021) Lee, Sophie A.

Data and R code to accompany 'The impact of climate suitability, urbanisation, and connectivity on the expansion of dengue in 21st century Brazil' (version 1.0.0). (2021) Lee, Sophie A., Economou, Theodoros, de Castro Catão, Rafael, Barcellos, Christovam, Lowe, Rachel

StAR2D Patient Interview and Focus Group Guide: Formative Intervention development study. (2021) Leon, Natalie, Namadingo, Hazel, Bobrow, Kirsty, Cooper, Sara, Crampin, Amelia C., Pauly, Bruno, Levitt, Naomi, Farmer, Andrew

CEmimix ADO file. (2021) Leurent, Baptiste, Cro, Suzie

The data used to determine the required diagnostic performance, the sample size and the corresponding decision cut-offs. (2021) Levecke, Bruno, Coffeng, Luc E., Hanna, Christopher, Pullan, Rachel L., Gass, Katherine M.

Healthcare use by people who use illicit opioids (HUPIO): development of a cohort based on electronic primary care records in England (extended data). (2021) Lewer, Dan, Padmanathan, Prianka, Arfeen, Muhammad Najam Ul, Denaxas, Spiros, Forbes, Harriet, Gonzalez-Izquierdo, Arturo, Hickman, Matt

Replication Data for: LPG stove and fuel intervention among pregnant women reduce fine particle air pollution exposures in three countries: Pilot results from the HAPIN trial. (2021) Liao, Jiawen, Kirby, Miles A., Pillarisetti, Ajay, Piedrahita, Ricardo, Balakrishnan, Kalpana, Sambandam, Sankar, Mukhopadhyay, Krishnendu, Ye, Wenlu, Rosa, Ghislaine, Majorin, Fiona, Dusabimana, Ephrem, Ndagijimana, Florien, McCracken, John P., Mollinedo, Erick, de Leon, Oscar, Díaz-Artiga, Anaité, Thompson, Lisa M., Kearns, Katherine A., Naeher, Luke, Rosenthal, Joshua, Clark, Maggie L., Steenland, Kyle, Waller, Lance A., Checkley, William, Peel, Jennifer L., Clasen, Thomas

A Comparison of Different Community Models of ART Delivery Amongst Stable HIV+ Patients in two Urban Settings in Zambia - Study Protocol. (2021) Limbada, Mohammed, Ayles, Helen, Macleod, David

liang-yu12/vd_covid. (2021) Lin, Liang Yu

Supplementary data files & video for Carrasco-Tenezaca published in the Journal of the Royal Society Interface, 'The relationship between house height and mosquito house entry: an experimental study in rural Gambia. (2021) Lindsay, Steve, Carrasco-Tenezaca, Majo, Jawara, Musa, Bradley, John, D'Alessandro, Umberto, Jeffries, David, Pinder, Margaret, Knudsen, Jakob

Chjulian/sheffield_HT: Characterising within-hospital SARS-CoV-2 transmission events. (2021) Lindsey, Benjamin B., Villabona-Arenas, Christian Julian, Atkins, Katherine E., Campbell, Finlay

supingling/glycaemic-control. (2021) Ling, Suping

supingling/overtreatment. (2021) Ling, Suping

Optimising health and economic impacts of COVID-19 vaccine rollout strategies in the WHO European Region. (2021) Liu, Yang, Sandmann, Frank G., Barnard, Rosanna C., Pearson, Carl A.B., CMMID Working-19 Working Group, Pastore, Roberta, Pebody, Richard, Flasche, Stefan, Jit, Mark

Country Level COVID-19 Vaccination Prioritisation Decision Support Tool for WHO EUR. (2021) Liu, Yang, Sandmann, Frank, Barnard, Rosanna C., Pearson, Carl A. B., LSHTM CMMID COVID-19 Working Group, Davies, Nicholas G., Jit, Mark

Atypical Salmonella: Invasive atypical non-typhoidal Salmonella serovars in The Gambia. (2021) London School of Hygiene & Tropical Medicine

Sequencing of M/XDR isoaltes from Pakistan. (2021) London School of Hygiene & Tropical Medicine

Supplementary material from "Interventions targeting non-symptomatic cases can be important to prevent local outbreaks: SARS-CoV-2 as a case study". (2021) Lovell-Read, Francesca A., Funk, Sebastian, Obolski, Uri, Donnelly, Christl A., Thompson, Robin N.

Clinical codelist - CPRD Gold - harmful alcohol use. (2021) Lowe, Katherine, Mansfield, Kathryn E., Demenestri, A, Smeeth, Liam

Data and R code to accompany 'Combined effects of hydrometeorological hazards and urbanisation on dengue risk in Brazil: a spatiotemporal modelling study'. (2021) Lowe, Rachel

EMaBS 1 to 5 years illness data and ARD outcomes at 9 years. (2021) Lubyayi, Lawrence, Webb, Emily

migariane/Spanish_LifeTablesByDeprivation: Spanish Abridged Life Tables by Deprivation. (2021) Luque-Fernandez, Miguel Angel

C. difficle p-cresol production. (2021) Lynham, Steven, Dawson, Lisa

M

petermacp/tbcascade. (2021) MacPherson, Peter

Gambia National Eye Health Survey 2019 Study Documents. (2021) Mactaggart, Islay

CIN paediatric admissions. (2021) Malla, Lucas, Langat, Reuben, Akech, Samuel

Clinical codelist - CPRD Gold - hypertension. (2021) Mansfield, Kathryn E.

Clinical codelist - CPRD Gold - ischaemic heart disease. (2021) Mansfield, Kathryn E.

Maternal and newborn health project in Gombe state, northeast Nigeria. Data from clinical observations, exit interviews, follow up surveys between 2016 and 2019. (2021) Marchant, Tanya

Maternal and newborn health project in Gombe state, northeast Nigeria. Data from household, health facility and birth attendant surveys between 2015 and 2019. (2021) Marchant, Tanya

Risk messages relating to pregnancy and fertility: a media content analysis (dataset). (2021) Marshall, Olivia, Blaylock, Rebecca, Murphy, Clare, Sanders, Julia

PierreMasselot/Frontier-FrenchScientificYoutube. (2021) Masselot, Pierre

PierreMasselot/Paper--2021--JRSS_SA--Machine_Learning_Thresholds. (2021) Masselot, Pierre

PierreMasselot/emdr. (2021) Masselot, Pierre

PierreMasselot/primr. (2021) Masselot, Pierre

Risk factor codelist - Ethnicity. (2021) Mathur, Rohini

Comparative genomic analyses of Trypanosoma cruzi experimental hybrids. (2021) Matos, Gabriel Machado, Lewis, Michael D, Talavera-López, Carlos, Yeo, Matthew, Grisard, Edmundo C, Messenger, Louisa A, Miles, Michael A, Andersson, Björn

d-mayerova/Vaccine_confidence_Albania. (2021) Mayerová, Daniela, Abbas, Kaja M.

Testing the recording of priority facility-based, maternal and newborn coverage indicators for use in health management information systems. (2021) Mbaruku, Godfrey

Supplementary material for the article, "Measles Outbreak Investigation Process in Low- and Middle-Income Countries: A Systematic Review of the Methods and Costs of Contact Tracing". (2021) Mbivnjo, Etheldreda L., Lynch, Mary, Huws, Jaci C.

The development of a SPIRIT extension for trials conducted using cohorts and routinely collected data (SPIRIT-ROUTINE). (2021) McCarthy, Megan, O'Keeffe, Linda, Williamson, Paula, Sydes, Matthew, Farrin, Amanda, Lugg-Widger, Fiona, Davies, Gwyneth, Avery, Kerry, Chan, An-Wen, Kwakkenbos, Linda, Thombs, Brett, Watkins, Alan, Hemkens, Lars G., Gale, Chris, Zwarenstein, Merrick, Langan, Sinead, Thabane, Lehana, Juszczak, Edmund, Moher, David, Kearney, Patricia

NickyMcC/WithinClinics. (2021) McCreesh, Nicky

NickyMcC/CasualAgeMixing. (2021) Mccreesh, Nicky

Social contact information from PIPSA residents in uMkhanyakude before and during the Covid-19 pandemic – data from the Umoya Omuhle and Covid Social Contacts studies. (2021) Mccreesh, Nicky, Dlamini, Vuyiswa, Edwards, Anita, Olivier, Stephen, Dayi, Njabulo, Dikgale, Keabetswe, Nxumalo, Siyabonga, Dreyer, Jaco, Baisley, Kathy, Siedner, Mark J., White, Richard G., Herbst, Kobus, Grant, Alison D., Harling, Guy

Paul-Mee/clic_brazil. (2021) Mee, Paul, Alexander, Neal, Colón-González, Felipe J

Validation of Correlates of Risk of TB Disease in High Risk Populations (CORTIS-HR) Study: Public, subject-level RISK11 signature scores and metadata. (2021) Mendelsohn, Simon C, Fiore-Gartland, Andrew, Penn-Nicholson, Adam, Mulenga, Humphrey, Kimbung, Stanley, Borate, Bhavesh, Hadley, Katie, Hikuam, Chris, Musvosvi, Munyaradzi, Bilek, Nicole, Erasmus, Mzwandile, Jaxa, Lungisa, Raphela, Rodney, Nombida, Onke, Kaskar, Masooda, Sumner, Tom, White, Richard G, Innes, Craig, Brumskine, William, Hiemstra, Andriëtte, Malherbe, Stephanus T, Hassan-Moosa, Razia, Tameris, Michèle, Walzl, Gerhard, Naidoo, Kogieleum, Churchyard, Gavin, Scriba, Thomas J, Hatherill, Mark

Effectiveness of seasonal malaria chemoprevention at scale in west and central Africa: an observational study. (2021) Milligan, Paul

Analysis of non-communicable disease reports contributing to UN high-level meeting process (2000-2020). (2021) Millington, James, Okpako, Oritsematosan, Herrick, Clare

PERU MIGRANT Study. (2021) Miranda, J Jaime, Bernabé-Ortiz, Antonio, Carrillo-Larco, Rodrigo

Rapid Assessment of Avoidable Blindness Dataset: Nepal, Sudurpashchim Province (2021). (2021) Mishra, Sailesh

A peer-led intervention to promote sexual health in secondary schools: the STASH feasibility study. (2021) Mitchell, Kirstin, Purcell, Carrie, Forsyth, Ross, Barry, Sarah, Hunter, Rachael, Simpson, Sharon Anne, McDaid, Lisa, Elliot, Lawrence, McCann, Mark, Wetherall, Kirsty, Broccatelli, Chiara, Bailey, Julia V, Moore, Laurence

Additional file 5 of Improving the quality of malaria diagnosis in southern Africa through the development of a regional malaria slide bank. (2021) Moodley, Bhavani, Chinorumba, Anderson, Hamman, Cheryl, Matamba, Avhatakali, Sikaala, Chadwick H., Kleinschmidt, Immo, Frean, John

Childhood obesity. (2021) Mosha, Mary Vincent, Msuya, Sia E., Kasagama, Elizabeth, Ayieko, Philip, Todd, Jim, Filteau, Suzanne

The H3A Diabetes Study: A multi-centre study of the prevalence and environmental and genetic determinants of type 2 diabetes in sub-Saharan Africa. (Field Data collection 2015-2018). (2021) Motala, Ayesha, Adebamowo, Clement, Balde, Naby, Kaleebu, Pontiano, Kapiga, Saidi, Levitt, Naomi, Mayige, Mary, McCarthy, Mark, Nyirenda, Moffat, Heyderman, Robert, Oli, John, Rotimi, Charles, Sandhu, Manjinder, Sobngwi, Eugene, Smeeth, Liam, Kenneth, Ekoru

DNDI-6148: A Novel Benzoxaborole Preclinical Candidate for the Treatment of Visceral Leishmaniasis. (2021) Mowbray, Charles E, Braillard, Stéphanie, Glossop, Paul A, Whitlock, Gavin A, Jacobs, Robert T, Speake, Jason, Pandi, Bharathi, Nare, Bakela, Maes, Louis, Yardley, Vanessa, Freund, Yvonne, Wall, Richard J, Carvalho, Sandra, Bello, Davide, Van den Kerkhof, Magali, Caljon, Guy, Gilbert, Ian H, Corpas-Lopez, Victoriano, Lukac, Iva, Patterson, Stephen, Zuccotto, Fabio, Wyllie, Susan

Prevalence of stroke survival in rural communities living in northern Peru. S1 Data. (2021) Moyano, Luz M., Montano, Silvia M., Vilchez Barreto, Percy, Reto, Narcisa, Larrauri, Luis, Mori, Nicanor, Cornejo-Olivas, Mario, Guevara-Silva, Erik, Urizar, Fernando, Najar, Enrique, Gamboa, Ricardo, Azabache, Cintya, Herrer Ticse, Raquel, Bolivar-Herrada, Lucia, Doud, Alex, Martinez, Peggy, Miranda, J. Jaime, Zunt, Joseph R., García, Hector H.

Kisesa Tanzania - HIV missing data analysis. (2021) Mtenga, Baltazar, Beard, James, Todd, Jim, Urassa, Mark

Two-stage topic modelling of scientific publications: A case study of University of Nairobi, Kenya. S1 Data. (2021) Muchene, Leacky, Safari, Wende

Additional file 1 of Neighbourhood and path-based greenspace in three European countries: associations with objective physical activity. (2021) Mueller, William, Wilkinson, Paul, Milner, James, Vardoulakis, Sotiris, Steinle, Susanne, Pärkkä, Juha, Parmes, Eija, Cluitmans, Luc, Kuijpers, Eelco, Pronk, Anjoeka, Sarigiannis, Denis, Karakitsios, Spyros, Chapizanis, Dimitris, Maggos, Thomas, Stamatelopoulou, Asimina, Loh, Miranda

S1 File for "Multi-criteria suitability analysis for neglected and underutilised crop species in South Africa". (2021) Mugiyo, Hillary, Chimonyo, Vimbayi G P, Sibanda, Mbulisi, Kunz, Richard, Nhamo, Luxon, Masemola, Cecelia R, Dalin, Caroline, Modi, Albert T, Mabhaudhi, Tafadzwa

Ileal amino acid digestibility and DIAAS values of world foods. (2021) Muleya, Molly, Salter, Andrew

Impact of the DREAMS interventions on educational attainment among adolescent girls and young women: Causal analysis of a prospective cohort in urban Kenya. Analytical datasets. (2021) Mulwa, Sarah, Chimoyi, Lucy, Agbla, Schadrac, Osindo, Jane, Wambiya, Elvis O, Gourlay, Annabelle, Birdthistle, Isolde, Ziraba, Abdhalah, Floyd, Sian

Number and proportions of AGYW aged 15–22 years retained in the study vs those lost to follow up at endline (2019), by AGYW characteristics. (2021) Mulwa, Sarah, Chimoyi, Lucy, Agbla, Schadrac, Osindo, Jane, Wambiya, Elvis O, Gourlay, Annabelle, Birdthistle, Isolde, Ziraba, Abdhalah, Floyd, Sian

Number of interventions accessed by age group, schooling status at baseline, and invitation to DREAMS. (2021) Mulwa, Sarah, Chimoyi, Lucy, Agbla, Schadrac, Osindo, Jane, Wambiya, Elvis O, Gourlay, Annabelle, Birdthistle, Isolde, Ziraba, Abdhalah, Floyd, Sian

Results from sensitivity analysis for associations between DREAMS and educational attainment. (2021) Mulwa, Sarah, Chimoyi, Lucy, Agbla, Schadrac, Osindo, Jane, Wambiya, Elvis O, Gourlay, Annabelle, Birdthistle, Isolde, Ziraba, Abdhalah, Floyd, Sian

jdmunday/SchoolHouseholdNetworksCOVID: Initial release. (2021) Munday, James D.

jdmunday/CoMix_schools_reopening. (2021) Munday, James D., Jarvis, Christopher I.

CoMix - Age structured contact matrices for 9 key periods of the COVID-19 epidemic in England. (2021) Munday, James D, Jarvis, Christopher I., Gimma, Amy, Wong, Kerry L, van Zandvoort, Kevin, Funk, Sebastian, Edmunds, W. John

Additional file 5 of Assessing antibody decline after chemotherapy of early chronic Chagas disease patients. (2021) Murphy, Niamh, Cardinal, M. Victoria, Bhattacharyya, Tapan, Enriquez, Gustavo F., Macchiaverna, Natalia P., Alvedro, Alejandra, Freilij, Héctor, Martinez de Salazar, Pablo, Molina, Israel, Mertens, Pascal, Gilleman, Quentin, Gürtler, Ricardo E., Miles, Michael A.

Replication data for: Characterization of naturally acquired immunity to a panel of antigens expressed in mature P. falciparum gametocytes. (2021) Muthui, Michelle K., Takashima, Eizo, Omondi, Brian R., Kinya, Christine, Muasya, William I., Nagaoka, Hikaru, Mwai, Kennedy, Orindi, Benedict, Wambua, Juliana, Bousema, Teun, Drakeley, Chris, Blagborough, Andrew M., Marsh, Kevin, Bejon, Philip, Kapulu, Melissa C.

Additional file 1 of Wealth-related inequalities in demand for family planning satisfied among married and unmarried adolescent girls and young women in sub-Saharan Africa. (2021) Mutua, Martin K, Wado, Yohannes D, Malata, Monica, Kabiru, Caroline W, Akwara, Elsie, Melesse, Dessalegn Y, Fall, Ndèye Awa, Coll, Carolina V N, Faye, Cheikh, Barros, Aluisio J D

Clinical codelist - Anxiety and depression ICD-10 codes. (2021) Muzambi, Rutendo

Clinical codelist - Anxiety and depression Read codes. (2021) Muzambi, Rutendo

Clinical codelist - Asthma Read codes. (2021) Muzambi, Rutendo

Clinical codelist - Chronic Kidney Disease ICD-10. (2021) Muzambi, Rutendo

Clinical codelist - Chronic Kidney Disease Read codes. (2021) Muzambi, Rutendo

Clinical codelist - Chronic Liver Disease ICD-10. (2021) Muzambi, Rutendo

Clinical codelist - Chronic Liver Disease Read codes. (2021) Muzambi, Rutendo

Clinical codelist - Chronic Obstructive Pulmonary Disease ICD-10. (2021) Muzambi, Rutendo

Clinical codelist - Chronic Obstructive Pulmonary Disease Read codes. (2021) Muzambi, Rutendo

Clinical codelist - Cognitive impairment exclusion ICD-10 codes. (2021) Muzambi, Rutendo

Clinical codelist - Cognitive impairment exclusion Read codes. (2021) Muzambi, Rutendo

Clinical codelist - Dementia exclusion ICD-10 codes. (2021) Muzambi, Rutendo

Clinical codelist - Dementia exclusion Read codes. (2021) Muzambi, Rutendo

Clinical codelist - Diabetes ICD-10 codes. (2021) Muzambi, Rutendo

Clinical codelist - Diabetes Read codes. (2021) Muzambi, Rutendo

Clinical codelist - Heart failure ICD-10. (2021) Muzambi, Rutendo

Clinical codelist - Heart failure Read codes. (2021) Muzambi, Rutendo

Clinical codelist - Hypertension ICD-10 codes. (2021) Muzambi, Rutendo

Clinical codelist - Hypertension Read codes. (2021) Muzambi, Rutendo

Clinical codelist - Inflammatory Bowel Disease ICD-10 codes. (2021) Muzambi, Rutendo

Clinical codelist - Inflammatory Bowel Disease Read codes. (2021) Muzambi, Rutendo

Clinical codelist - Lower respiratory tract infections ICD-10 codes. (2021) Muzambi, Rutendo

Clinical codelist - Lower respiratory tract infections Read codes. (2021) Muzambi, Rutendo

Clinical codelist - Multiple Sclerosis ICD-10 codes. (2021) Muzambi, Rutendo

Clinical codelist - Multiple Sclerosis Read codes. (2021) Muzambi, Rutendo

Clinical codelist - Obstructive sleep opnoea ICD-10. (2021) Muzambi, Rutendo

Clinical codelist - Obstructive sleep opnoea Read codes. (2021) Muzambi, Rutendo

Clinical codelist - Psoriasis ICD-10 codes. (2021) Muzambi, Rutendo

Clinical codelist - Psoriasis Read codes. (2021) Muzambi, Rutendo

Clinical codelist - Rhematoid Arthritis ICD-10 codes. (2021) Muzambi, Rutendo

Clinical codelist - Rheumatoid Arthritis Read codes. (2021) Muzambi, Rutendo

Clinical codelist - Sepsis ICD-10 codes. (2021) Muzambi, Rutendo

Clinical codelist - Sepsis Read codes. (2021) Muzambi, Rutendo

Clinical codelist - Severe mental illness Read codes. (2021) Muzambi, Rutendo

Clinical codelist - Skin and soft tissue infections ICD-10 codes. (2021) Muzambi, Rutendo

Clinical codelist - Skin and soft tissue infections Read codes. (2021) Muzambi, Rutendo

Clinical codelist - Stroke ICD-10 codes. (2021) Muzambi, Rutendo

Clinical codelist - Stroke Read codes. (2021) Muzambi, Rutendo

Clinical codelist - Traumatic brain injury ICD-10 codes. (2021) Muzambi, Rutendo

Clinical codelist - Traumatic brain injury Read codes. (2021) Muzambi, Rutendo

Clinical codelist - Urinary tract infections ICD-10 codes. (2021) Muzambi, Rutendo

Clinical codelist - Urinary tract infections Read codes. (2021) Muzambi, Rutendo

Clinical codelist - asthma ICD-10 codes. (2021) Muzambi, Rutendo

Codelists for: "Are common infections associated with cognitive decline and neuroimaging outcomes? A historical cohort study using data from the UK Biobank study linked to primary and secondary care electronic health records". (2021) Muzambi, Rutendo

Therapy codelist - Antibiotics BNF/dm+d/read v2 codes. (2021) Muzambi, Rutendo

Therapy codelist - Anxiety and depression BNF/dm+d/Read v2 codes. (2021) Muzambi, Rutendo

Therapy codelist - Severe mental illness ICD-10 codes. (2021) Muzambi, Rutendo

ISAC Protocol 19_129 - Common infections and incident dementia: a historical cohort study using UK primary and secondary care data. (2021) Muzambi, Rutendo, Bhaskaran, Krishnan, Brayne, Carol, Chaturvedi, Nish, Smeeth, Liam, Warren-Gash, Charlotte

Codelists for: "Common infections and incident dementia: a historical cohort study using UK primary and secondary care data". (2021) Muzambi, Rutendo, Bhaskaran, Krishnan, Smeeth, Liam, Warren-Gash, Charlotte

Clinical codelist - CPRD Gold - traumatic brain injury. (2021) Muzambi, Rutendo, Warren-Gash, Charlotte

N

Anti-Microbials in Society - Uganda Study, 2017-2021. (2021) Naiga, Susan, Nabirye, Christine, Kayendeke, Miriam, Chandler, Clare

CHAKA-SONA Normative dataset. (2021) Nampijja, Margaret, Sembajjwe, Wilber, Mpango, Richard Stephen, Mpairwe, Harriet, Kinyanda, Eugene, Edward, Jane, Ayikoru, Teddy

National Survey of Sexual Attitudes and Lifestyles, 2010-2012: Biological Data: Secure Access. (2021) NatCen Social Research, London School of Hygiene & Tropical Medicine, Russell, M., Senior, M.

Community Survey of Lymphatic Filariasis Mass Drug Administration Acceptability in Guyana, August 2019. (2021) Niles, Reza A., Thickstun, Charles R., Cox, Horace, Dilliott, Daniel, Burgert-Brucker, Clara R., Harding-Esch, Emma M., Clementson, Nikita, Sampson, Annastacia, Alexandre, Jean Seme, Morice Trejos, Ana C., Scholte, Ronaldo G. Carvalho, Krentel, Alison

Replication Data for: Infection patterns of endemic human coronaviruses in rural households in coastal Kenya. (2021) Nyaguthii, Dickson Machira, Otieno, Grieven P., Kombe, Ivy K., Koech, Dorothy, Mutunga, Martin, Medley, Graham F., Nokes, D. James, Munywoki, Patrick K.

O

Quality of care in a differentiated HIV service delivery intervention in Tanzania: A mixed methods study. (2021) Okere, Nwanneka, Meta, Judith, Maokola, Werner, Martelli, Giulia, van Praag, Eric, Naniche, Denise, Gomez, Gabriela, Pozniak, Anton, Rinke de Wit, Tobias, de Klerk, Josien, Hermans, Sabine

Database of non-communicable disease reports contributing to UN high-level meeting process (2000-2020). (2021) Okpako, Oritsematosan, Herrick, Clare, Millington, James

Data for: "Informed Decisions for Actions to Improve Maternal and Newborn Health: The role of context in the implementation of Nigeria Healthcare Quality Initiative in Lagos State, Nigeria". (2021) Olaniran, Abimbola

ARGUS study - clinical and bacteriological outcomes dataset. (2021) Olaru, Ioana Diana

Knowledge, attitudes and practices relating to antibiotic use and resistance among prescribers from public primary healthcare facilities in Harare, Zimbabwe. (2021) Olaru, Ioana Diana

ARGUS clinical and bacteriological outcomes dataset. (2021) Olaru, Ioana-Diana

Supplementary Appendix 1b of "Optimizing geographical accessibility to primary health care at community level in Niger: a geospatial analysis". (2021) Oliphant, Nicholas P, Ray, Nicolas, Bensaid, Khaled, Ouedraogo, Adama, Gali, Asma Yaroh, Habi, Oumarou, Maazou, Ibrahim, Panciera, Rocco, Muñiz, Maria, Manda, Samuel OM, Sy, Zeynabou, Jackson, Debra, Doherty, Tanya

Supplementary Appendix 1c of "Toward a geography of community health workers in Niger: a geospatial analysis". (2021) Oliphant, Nicholas P, Ray, Nicolas, Bensaid, Khaled, Ouedraogo, Adama, Gali, Asma Yaroh, Habi, Oumarou, Maazou, Ibrahim, Panciera, Rocco, Muñiz, Maria, Manda, Samuel OM, Sy, Zeynabou, Jackson, Debra, Doherty, Tanya

Supplementary Appendix 1b of "Optimising geographical accessibility to primary health care: a geospatial analysis of community health posts and community health workers in Niger". (2021) Oliphant, Nicholas Paul, Ray, Nicolas, Bensaid, Khaled, Ouedraogo, Adama, Gali, Asma Yaroh, Habi, Oumarou, Maazou, Ibrahim, Panciera, Rocco, Muñiz, Maria, Sy, Zeynabou, Manda, Samuel, Jackson, Debra, Doherty, Tanya

Supplementary Appendix 1c of "Optimising geographical accessibility to primary health care: a geospatial analysis of community health posts and community health workers in Niger". (2021) Oliphant, Nicholas Paul, Ray, Nicolas, Bensaid, Khaled, Ouedraogo, Adama, Gali, Asma Yaroh, Habi, Oumarou, Maazou, Ibrahim, Panciera, Rocco, Muñiz, Maria, Sy, Zeynabou, Manda, Samuel, Jackson, Debra, Doherty, Tanya

Results of the Web-Delphi process to INAMI stakeholders (three rounds). (2021) Oliveira, Mónica Duarte, Dimitrovová, Klára, Angelis, Aris, Kanavos, Panos, Bana e Costa, Carlos

Results of the Web-Delphi process to YLV stakeholders (three rounds). (2021) Oliveira, Mónica Duarte, Dimitrovová, Klára, Angelis, Aris, Kanavos, Panos, Bana e Costa, Carlos

IMPACT HTA, WP7 (Methodological tools using multi-criteria value methods for HTA decision-making), Task 2 (Multi-criteria evaluation framework), Results of the 2nd Web-Delphi process to HTA stakeholders, organized in a single panel. (2021) Oliveira, Mónica Duarte, Dimitrovová, Klára, Vieira, Ana Lopes, Angelis, Aris, Kanavos, Panos, Bana e Costa, Carlos

IMPACT HTA, WP7 (Methodological tools using multi-criteria value methods for HTA decision-making), Task 2 (Multi-criteria evaluation framework), Results of the 1st Web-Delphi process to HTA stakeholders, organized into 6 separate parallel panels. (2021) Oliveira, Mónica Duarte, Vieira, Ana Lopes, Dimitrovová, Klára, Angelis, Aris, Kanavos, Panos, Bana e Costa, Carlos

Invariance of the WHO violence against women instrument among Kenyan adolescent girls and young women: Bayesian psychometric modeling. S1 Dataset. (2021) Orindi, Benedict O., Ziraba, Abdhalah, Bruyneel, Luk, Floyd, Sian, Lesaffre, Emmanuel

Replication Data for: Mortality in rural coastal Kenya measured using the Kilifi Health and Demographic Surveillance System: a 16-year descriptive analysis. (2021) Otiende, Mark, Bauni, Evasius, Nyaguara, Amek, Amadi, David, Nyundo, Christopher, Tsory, Emmanuel, Walumbe, David, Kinuthia, Michael, Kihuha, Norbert, Kahindi, Michael, Nyutu, Gideon, Moisi, Jennifer, Deribew, Amare, Agweyu, Ambrose, Marsh, Kevin, Tsofa, Benjamin, Bejon, Philip, Bottomley, Christian, Williams, Thomas N, Scott, J Anthony G

Friendship Bench problem-solving therapy and its impact on adherence to ART among young people – Interview transcripts. (2021) Ouansafi, Ilhame

Interview topic guide for: "Impact of Friendship Bench problem-solving therapy on adherence to ART in young people living with HIV in Zimbabwe". (2021) Ouansafi, Ilhame, Chibanda, Dixon, Munetsi, Epiphania, Simms, Victoria

Additional file 1 of Determination of the discriminating concentration of chlorfenapyr (pyrrole) and Anopheles gambiae sensu lato susceptibility testing in preparation for distribution of Interceptor® G2 insecticide-treated nets. (2021) Oxborough, Richard M, Seyoum, Aklilu, Yihdego, Yemane, Chabi, Joseph, Wat’senga, Francis, Agossa, Fiacre R, Coleman, Sylvester, Musa, Samdi Lazarus, Faye, Ousmane, Okia, Michael, Bayoh, Mohamed, Alyko, Evelyne, Rakotoson, Jean-Desire, Masendu, Hieronymo, Sovi, Arthur, Gadiaga, Libasse, Abong’o, Bernard, Opondo, Kevin, Baber, Ibrahima, Dabire, Roch, Gnanguenon, Virgile, Yohannes, Gedeon, Varela, Kenyssony, Fondjo, Etienne, Carlson, Jenny, Armistead, Jennifer S, Dengela, Dereje

Additional file 2 of Determination of the discriminating concentration of chlorfenapyr (pyrrole) and Anopheles gambiae sensu lato susceptibility testing in preparation for distribution of Interceptor® G2 insecticide-treated nets. (2021) Oxborough, Richard M, Seyoum, Aklilu, Yihdego, Yemane, Chabi, Joseph, Wat’senga, Francis, Agossa, Fiacre R, Coleman, Sylvester, Musa, Samdi Lazarus, Faye, Ousmane, Okia, Michael, Bayoh, Mohamed, Alyko, Evelyne, Rakotoson, Jean-Desire, Masendu, Hieronymo, Sovi, Arthur, Gadiaga, Libasse, Abong’o, Bernard, Opondo, Kevin, Baber, Ibrahima, Dabire, Roch, Gnanguenon, Virgile, Yohannes, Gedeon, Varela, Kenyssony, Fondjo, Etienne, Carlson, Jenny, Armistead, Jennifer S, Dengela, Dereje

Additional file 3 of Determination of the discriminating concentration of chlorfenapyr (pyrrole) and Anopheles gambiae sensu lato susceptibility testing in preparation for distribution of Interceptor® G2 insecticide-treated nets. (2021) Oxborough, Richard M, Seyoum, Aklilu, Yihdego, Yemane, Chabi, Joseph, Wat’senga, Francis, Agossa, Fiacre R, Coleman, Sylvester, Musa, Samdi Lazarus, Faye, Ousmane, Okia, Michael, Bayoh, Mohamed, Alyko, Evelyne, Rakotoson, Jean-Desire, Masendu, Hieronymo, Sovi, Arthur, Gadiaga, Libasse, Abong’o, Bernard, Opondo, Kevin, Baber, Ibrahima, Dabire, Roch, Gnanguenon, Virgile, Yohannes, Gedeon, Varela, Kenyssony, Fondjo, Etienne, Carlson, Jenny, Armistead, Jennifer S, Dengela, Dereje

Liver function tests and fibrosis scores in a rural population in Africa. (2021) O’Hara, Geraldine, Mokaya, Jolynne, Hau, Jeffrey, Downs, Louise, Karabarinde, Alex, Asiki, Gershim, McNaughton, Anna, Seeley, Janet, Matthews, Philippa, Newton, Robert

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Sedentarisation and maternal childcare networks: role of risk, gender and demography. (2021) Page, Abigail E, Dyble, Mark, Migliano, Andrea B, Viguier, Sylvain, Hassan, Anushé, Major-Smith, Daniel

covidregionaldata: Subnational data for COVID-19 epidemiology. (2021) Palmer, Joseph, Sherratt, Katharine, Martin-Nielsen, Richard, Bevan, Jonnie, Gibbs, Hamish, CMMID COVID-19 Working Group, Funk, Sebastian, Abbott, Sam

eparker12/RoVI: Analysis code and data for RoVI study primary outcomes. (2021) Parker, Edward

vac-lshtm/VaC_tracker. (2021) Parker, Edward

Replication Data for: Malaria infection and severe disease risks in Africa. (2021) Paton, Robert S., Kamau, Alice, Akech, Samuel, Agweyu, Ambrose, Ogero, Morris, Mwandawiro, Charles, Mturi, Neema, Mohammed, Shebe, Mpimbaza, Arthur, Kariuki, Simon, Otieno, Nancy A., Nyawanda, Bryan O., Mohamed, Amina F., Mtove, George, Reyburn, Hugh, Gupta, Sunetra

Data for: Air-Conditioning and the Adaptation Cooling Deficit in Emerging Economies, Pavanello et al 2021. (2021) Pavanello, Filippo, De Cian, Enrica, Davide, Marinella, Mistry, Malcolm, Cruz, Talita Borges, Bezerra, Paula da Silveira, Jagu, Dattakiran, Renner, Sebastian, Schaffer, Roberto, Lucena, André F. P.

Data and R code accompanying the manuscript "The impact of population-wide rapid antigen testing on SARS-CoV-2 prevalence in Slovakia". (2021) Pavelka, Martin, van Zandvoort, Kevin, Abbott, Sam, Sherratt, Katharine, Majdan, Marek, Jarcuska, Pavel, Krajci, Marek, Flasche, Stefan, Funk, Sebastian

PROTECT initiative extended Covid-19 occupational questionnaire. (2021) Pearce, Neil

Simulation results for "COVID-19 vaccination in Sindh Province, Pakistan: a modelling study of health impact and cost-effectiveness". (2021) Pearson, Carl A B, Bozzani, Fiammetta, Procter, Simon R, Davies, Nicholas G, Huda, Maryam, Jensen, Henning Tarp, Keogh-Brown, Marcus, Khalid, Muhammad, Sweeney, Sedona, Torres-Rueda, Sergio, Eggo, Rosalind M, Vassall, Anna, Jit, Mark

cmmid/covidTestVac. (2021) Pearson, Carl A. B.

cmmid/SA2UK. (2021) Pearson, Carl A. B., Russell, Timothy W., Kucharski, Adam J.

Community-based prevalence of Rheumatic Heart Disease in rural Ethiopia: five-year follow-up. (2021) Phillips, David, Gemechu, Tadesse, Parry, Eldryd, Yacoub, Magdi, Kotit, Susy

Supplementary material for Pisani et al: Substandard and falsified medicines: proposed methods for case finding and sentinel surveillance. (2021) Pisani, Elizabeth, Hasnida, Amalia, Rahmi, Mawaddati, Harsono, Steven, Kok, MO, Anggriani, Yusi

MatchThem: Matching and Weighting Multiply Imputed Datasets. (2021) Pishgar, Farhad, Greifer, Noah, Leyrat, Clemence, Stuart, Elizabeth

t-pollington/developments_tau_statistic. (2021) Pollington, Timothy M, Tildesley, Michael J, Hollingsworth, T Déirdre, Chapman, Lloyd A. C.

Code for: "Socioeconomic inequalities in the quality of primary care under Brazil’s national pay-for-performance programme: a longitudinal study of family health teams". (2021) Powell-Jackson, Timothy, Kovacs, Roxanne, Borghi, Josephine

Data file including CystiAgent simulation results, observed results from the Ring Strategy Trial, and all intervention settings for each village evaluated (n = 21 villages). (2021) Pray, Ian W., Pizzitutti, Francesco, Bonnet, Gabrielle, Gonzales-Gustavson, Eloy, Wakeland, Wayne, Pan, William K., Lambert, William E., Gonzalez, Armando E., Garcia, Hector H., O’Neal, Seth E.

kieshaprem/nsum: Release of NSUM codes version 1.0. (2021) Prem, Kiesha

kieshaprem/synthetic-contact-matrices. (2021) Prem, Kiesha

Blood glucose concentration time series in mice infected with malaria parasites. (2021) Prior, Kimberley F., Middleton, Benita, Owolabi, Alíz T.Y., Westwood, Mary L., Holland, Jacob, O'Donnell, Aidan J., Blackman, Michael J., Skene, Debra J., Reece, Sarah E.

Plasmodium chabaudi genotype DK parasite stages during time series. (2021) Prior, Kimberley F., Middleton, Benita, Owolabi, Alíz T.Y., Westwood, Mary L., Holland, Jacob, O'Donnell, Aidan J., Blackman, Michael J., Skene, Debra J., Reece, Sarah E.

Plasmodium schizont densities in culture grown with and without isoleucine, as well as isoleucine starvation for different durations of time. (2021) Prior, Kimberley F., Middleton, Benita, Owolabi, Alíz T.Y., Westwood, Mary L., Holland, Jacob, O'Donnell, Aidan J., Blackman, Michael J., Skene, Debra J., Reece, Sarah E.

Plasmodium schizont proportion in culture grown with and without isoleucine. (2021) Prior, Kimberley F., Middleton, Benita, Owolabi, Alíz T.Y., Westwood, Mary L., Holland, Jacob, O'Donnell, Aidan J., Blackman, Michael J., Skene, Debra J., Reece, Sarah E.

Targeted metabolomics on malaria-infected mouse blood. (2021) Prior, Kimberley F., Middleton, Benita, Owolabi, Alíz T.Y., Westwood, Mary L., Holland, Jacob, O'Donnell, Aidan J., Blackman, Michael J., Skene, Debra J., Reece, Sarah E.

rachaelpung/serial_interval_covid_b.1.617.2. (2021) Pung, Rachael

Q

cmmid/covid_quar_test_import_risk. (2021) Quilty, Billy

cmmid/quar_test_contact_tracing. (2021) Quilty, Billy

R code for: "Confirmatory testing with a second lateral flow test may mitigate false positives at low levels of SARS-CoV-2 prevalence in English schools". (2021) Quilty, Billy J, Hellewell, Joel, Clifford, Samuel, CMMID COVID-19 working group

Replication Data for: Fidelity and Adherence to a Liquefied Petroleum Gas Stove and Fuel Intervention during Gestation: The Multi-Country Household Air Pollution Intervention Network (HAPIN) Randomized Controlled Trial. (2021) Quinn, Ashlinn K., Williams, Kendra N., Thompson, Lisa M., Harvey, Steven A., Piedrahita, Ricardo, Wang, Jiantong, Quinn, Casey, Pillarisetti, Ajay, McCracken, John P., Rosenthal, Joshua P., Kirby, Miles A., Diaz Artiga, Anaité, Thangavel, Gurusamy, Rosa, Ghislaine, Miranda, J. Jaime, Checkley, William, Peel, Jennifer L., Clasen, Thomas F.

R

Additional file 1 of An innovative and integrated model for global outbreak response and research - a case study of the UK Public Health Rapid Support Team (UK-PHRST). (2021) Raftery, Philomena, Hossain, Mazeda, Palmer, Jennifer

Clinic attendance by sex and HIV status in rural South Africa. (2021) Randera-Rees, Safiyya, Safari, Wende Clarence, Gareta, Dickman, Herbst, Kobus, Baisley, Kathy, Grant, Alison D.

Data for: "The impact of COVID-19 on clinical research for Neglected Tropical Diseases (NTDs): A case study of bubonic plague". (2021) Rasoanaivo, Tsinjo Fehizoro, Bourner, Josephine, Randriamparany, Ravaka Niaina, Gamana, Théodora Mayouya, Andrianaivoarimanana, Voahangy, Raherivelo, Mily Harijaona, Randriamampionona, Harivelo, Rajerison, Minoarisoa, Raberahona, Mihaja, Salam, Alex Paddy, Edwards, Tansy, Olliaro, Piero L., Randremanana, Rindra Vatosoa

erees/seasonalHCoV. (2021) Rees, Eleanor

Additional file 1 of Knowledge, attitude and practice of Ethiopian pediatricians concerning childhood eye diseases. (2021) Regassa, Tolosa Tufa, Daba, Kumale Tolesa, Fabian, Ido Didi, Mengasha, Aemero Abateneh

A Randomized Cluster Controlled Study of an Interactive Voice Response Intervention and PD/Hearth ("PDH") to Improve Knowledge, Behavior Change, and Level of Confidence in Caregivers of Underweight Children in Cambodia. (2021) Reinsma, Kate, Baik, Diane

Additional file 2 of Investigating the DNA methylation profile of e-cigarette use. (2021) Richmond, Rebecca C., Sillero-Rejon, Carlos, Khouja, Jasmine N., Prince, Claire, Board, Alexander, Sharp, Gemma, Suderman, Matthew, Relton, Caroline L., Munafò, Marcus, Gage, Suzanne H.

Correlation among experience of person-centered maternity care, provision of care and women’s satisfaction: Cross sectional study in Colombo, Sri Lanka. S1 File. (2021) Rishard, Mohamed, Fahmy, Fathima Fahila, Senanayake, Hemantha, Ranaweera, Augustus Keshala Probhodana, Armocida, Benedetta, Mariani, Ilaria, Lazzerini, Marzia

o2geosocial: Reconstruction of Transmission Chains from Surveillance Data. (2021) Robert, Alexis, Funk, Sebastian, Kucharski, Adam J., Jombart, Thibaut

Data for: "Vaccine Confidence and Hesitancy at the start of COVID-19 vaccine deployment in the UK: An embedded mixed-methods study". (2021) Roberts, Chrissy, Brindle, Hannah, Rogers, Nina, Eggo, Rosalind M., Enria, Luisa, Lees, Shelley

Behavioural change towards reduced intensity physical activity is disproportionately prevalent among adults with serious health issues or self-perception of high risk during the UK COVID-19 lockdown. (2021) Roberts, Chrissy, Rogers, Nina, Waterlow, Naomi, Brindle, Hannah, Enria, Luisa, Lees, Shelley

LSHTM-ORK/ODK_Biometrics. (2021) Roberts, Chrissy, Stott, Callum

Primary and secondary measurements collected when trialling use of insecticide-treated scarves to protect against Musca sorbens. (2021) Robinson, Ailie, Reis de Oliveira Gomes, Laura, Abdurahman, Oumer Shafi, Alemayehu, Wondu, Shuka, Gemeda, Melese, Ewunetu, Guye, Meseret, Legesse, Demitu, Elias, Eden, Temam, Kedir, Korso, Hirpo Koro, Muluadam, Abraham Aga, Virginia, Sarah, Lambert, Saba, Walker, Stephen L., Habtamu, Esmael, Solomon, Anthony S., Last, Anna R., Macleod, David, Burton, Matthew J., Logan, James G.

Additional file 3 of Childhood DNA methylation as a marker of early life rapid weight gain and subsequent overweight. (2021) Robinson, N., Brown, H., Antoun, Elie, Godfrey, Keith M., Hanson, Mark A., Lillycrop, Karen A., Crozier, Sarah R., Murray, Robert, Pearce, M. S., Relton, Caroline L., Albani, V., McKay, J. A.

rmjlros/COVID19_care_home_NPIs. (2021) Rosello, Alicia, Abbott, Sam, Barnard, Rosanna C.

Data for: "Sanitation-related Quality of Life (SanQoL) in Maputo, Mozambique". (2021) Ross, Ian

migariane/BayesVarImpComorbiCancer. (2021) Rubio, Francisco Javier, Alvares, Danilo, Redondo-Sanchez, Daniel, Luque-fernandez, Miguel Angel

Interview excerpts by major themes and sub-themes perceptions of HIV self-testing in Kampala. (2021) Rujumba, Joseph, Homsy, Jaco, Bannink, Femke, Namukwaya, Zikulah, Amone, Alexander, Rukundo, Gordon, Katabira, Elly, Byamugisha, Josaphat, Fowler, Mary Glenn, King, Rachel L.

Effect of suicidality on clinical and behavioural outcomes in HIV positive adults in Uganda. S1 Data. (2021) Rukundo, Godfrey Zari, Levin, Jonathan, Mpango, Richard Stephen, Patel, Vikram, Kinyanda, Eugene

National Survey of Sexual Attitudes and Lifestyles, 2010-2012: Secure Access. (2021) Russell, M., NatCen Social Research, London School of Hygiene & Tropical Medicine, Senior, M.

S

Clinic attendance by sex and HIV status in rural South Africa - Data and Code. (2021) Safari, Wendy, Baisley, Kathy

Where will it end? Pathways to care and catastrophic costs following negative TB evaluation in Uganda. Raw data for analysis. (2021) Samuels, Thomas H. A., Shete, Priya B., Ojok, Chris, Nalugwa, Talemwa, Farr, Katherine, Turyahabwe, Stavia, Katamba, Achilles, Cattamanchi, Adithya, Moore, David A. J.

Data supporting "Profiles of inflammation in rural and urban Uganda". (2021) Sanya, Richard, Webb, Emily

Data for: "High initial IgG antibody levels against Orientia tsutsugamushi are associated with an increased risk of severe scrub typhus infection". (2021) Schmidt, Wolf

opensafely/carehomes-short-data-report. (2021) Schultze, Anna, Hulme, Will, Davy, Simon, Mackenna, Brian, Nightingale, Emily, Inglesby, Peter

RISK11 signature scores for the biomarker-guided tuberculosis preventive therapy (CORTIS) randomised controlled trial. (2021) Scriba, Thomas J, Fiore-Gartland, Andrew, Penn-Nicholson, Adam, Mulenga, Humphrey, Kimbung Mbandi, Stanley, Borate, Bhavesh, Mendelsohn, Simon C, Hadley, Katie, Hikuam, Chris, Kaskar, Masooda, Musvosvi, Munyaradzi, Bilek, Nicole, Self, Steven, Sumner, Tom, White, Richard G, Erasmus, Mzwandile, Jaxa, Lungisa, Raphela, Rodney, Innes, Craig, Brumskine, William, Hiemstra, Andriëtte, Malherbe, Stephanus T, Hassan-Moosa, Razia, Tameris, Michèle, Walzl, Gerhard, Naidoo, Kogieleum, Churchyard, Gavin, Hatherill, Mark

RISK11 signature scores for the biomarker-guided tuberculosis preventive therapy (CORTIS) randomised controlled trial. (2021) Scriba, Thomas J, Fiore-Gartland, Andrew, Penn-Nicholson, Adam, Mulenga, Humphrey, Kimbung Mbandi, Stanley, Borate, Bhavesh, Mendelsohn, Simon C, Hadley, Katie, Hikuam, Chris, Kaskar, Masooda, Musvosvi, Munyaradzi, Bilek, Nicole, Self, Steven, Sumner, Tom, White, Richard G, Erasmus, Mzwandile, Jaxa, Lungisa, Raphela, Rodney, Innes, Craig, Brumskine, William, Hiemstra, Andriëtte, Malherbe, Stephanus T, Hassan-Moosa, Razia, Tameris, Michèle, Walzl, Gerhard, Naidoo, Kogieleum, Churchyard, Gavin, Hatherill, Mark

Lending a hand: developing a support structure for young migrants in South Africa and Uganda. (2021) Seeley, Janet

fsera/COVIDWeather. (2021) Sera, Francesco, Abbott, Sam, Roye, Dominic

Supplemental material for Women’s understanding of economic abuse in North-Western Tanzania. (2021) Serpa Pimentel, Anna de, Mshana, Gerry, Aloyce, Diana, Peter, Esther, Mchome, Zaina, Malibwa, Donati, Dwarumpudi, Annapoorna, Kapiga, Saidi, Stöckl, Heidi

Data for: "Importance of ventilation and occupancy to Mycobacterium tuberculosis transmission rates in congregate settings". (2021) Shaikh, Nabila, McCreesh, Nicky, Deol, Arminder

WOMAN-PharmacoTXA Trial: Pharmacokinetics and pharmacodynamics of tranexamic acid in women having caesarean section birth - Extended data. (2021) Shakur-Still, Haleema, Arribas, Monica, Roberts, Ian, Chaudhri, Rizwana, Geer, Amber, Prowse, Danielle, Lubeya, Mwansa Ketty, Kayani, Aasia, Javaid, Kiran, Grassin Delyle, Stanislas

The Evolutionary Dynamics of Religion, Family Size, and Child Success. (2021) Shaver, John, Shenk, Mary K, Sear, Rebecca, Sosis, Richard, Spake, Laure, Schaffnit, Susan, Lynch, Robert, Hassan, Anushé

Clinical codelist - CPRD Gold - herpes simplex. (2021) Shiekh, Suhail, Cadogan, Sharon, Warren-Gash, Charlotte

Replication Data for: Malaria in pregnancy: adverse effects on haemoglobin levels and birthweight in primigravidae and multigravidae. (2021) Shulman, Caroline E, Dorman, Edgar K, Cutts, Felicity, Kawuondo, Ken, Bulmer, Judith N., Peshu, Norbert, Marsh, Kevin

SoCFourier. (2021) Silver, Matt

Effectiveness of a peer-led adolescent mental health intervention on HIV virological suppression and mental health in Zimbabwe: data collection documents. (2021) Simms, Vicky

Effectiveness of a peer-led adolescent mental health intervention on HIV virological suppression and mental health in Zimbabwe: Baseline and Endline questionnaires. (2021) Simms, Vicky, Chinoda, Silindweyinkosi

Friendship Bench trial: lay worker training in problem-solving therapy to reduce symptoms of common mental disorders. (2021) Simms, Victoria

DidDrog11/smoking_covid_bayes. (2021) Simons, David

The association of smoking status with SARS-CoV-2 infection, hospitalisation and mortality from COVID-19: A living rapid evidence review and Bayesian meta-analyses (version 11) - Data. (2021) Simons, David, Shahab, Lion, Brown, Jamie, Perski, Olga

Total area predicted suitable and population living in suitable areas for Buruli ulcer, M. ulcerans, and both, by country in African continent. (2021) Simpson, Hope, Tabah, Earnest Njih, Phillips, Richard O., Frimpong, Michael, Maman, Issaka, Ampadu, Edwin, Timothy, Joseph, Saunderson, Paul, Pullan, Rachel L., Cano, Jorge

StatinWISE study data. (2021) Smeeth, Liam, Perkins, Alexander, Williamson, Elizabeth

Research data supporting "Discrepancies between two long-term dietary datasets in the United Kingdom (UK)". (2021) Smith, Kerry G, Scheelbeek, Pauline, Balmford, Andrew, Garnett, Emma E.

Data collection tools for a study on establishing the feasibility of parent support groups for children with Congenital Zika Syndrome and their families in Colombia. (2021) Smythe, Tracey, Reichenberger, Veronika, Pinzón, Elisa María, Hurtado, Isabel Cristina, Rubiano, Luisa, Kuper, Hannah

Experimental data of two IRS hut trials with broflanilide 50WP conducted in Moshi, Tanzania. (2021) Snetselaar, Janneke, Rowland, Mark, Manunda, Baltazari, Kisengwa, Ezekia, Small, Graham, Malone, David, Mosha, Franklin, Kirby, Matthew

Impact of color-coded and warning nutrition labelling schemes: A systematic review and network meta-analysis. (2021) Song, Jing, Brown, Mhairi K., Tan, Monique, MacGregor, Graham A., Webster, Jacqui, Campbell, Norm R. C., Trieu, Kathy, Ni Mhurchu, Cliona, Cobb, Laura K., He, Feng J.

Genome-Wide Association and Mendelian Randomization Analysis Reveal the Causal Relationship Between White Blood Cell Subtypes and Asthma in Africans. (2021) Soremekun, Opeyemi, Soremekun, Chisom, Machipisa, Tafadzwa, Soliman, Mahmoud, Nashiru, Oyekanmi, Chikowore, Tinashe, Fatumo, Segun

Data for: "Flavivirus integrations in Aedes aegypti are limited and highly conserved across samples from different geographic regions unlike integrations in Aedes albopictus". (2021) Spadar, Anton, Phelan, Jody, Diez-Benavente, Ernest, Campos, Monica, Gomez, Lara Ferrero, Mohareb, Fady, Clark, Taane G., Campino, Susana

Mother's partnership status and allomothering networks in the United Kingdom and United States. (2021) Spake, Laure, Schaffnit, Susie, Sear, Rebecca, Shenk, Mary K, Sosis, Richard, Shaver, John

Supplementary data to "The global and regional costs of healthy and sustainable dietary patterns: a modelling study". (2021) Springmann, Marco

Supplementary data to "Options for reforming agricultural subsidies from health, climate, and economic perspectives". (2021) Springmann, Marco, Freund, F

Anti-microbials In Society - Thailand, Study 1, 2017-2021. (2021) Sringernyuang, Luechai, Whanpuch, Phakha, Poompruek, Panoopat, Chandler, Clare

Raw data on messaging, extracted and anonymised after coding. (2021) Ssali, Agnes, Pickering, Lucy, Nalwadda, Edith, Mujumbusi, Lazaaro, Seeley, Janet, Lamberton, Poppy H. L.

Extended Data: Iron supplementation of breastfed Gambian infants from 6 weeks to 6 months of age: Protocol for a randomised controlled trial. (2021) Stelle, Isabella, Bah, Mamadou, Silverio, Sergio A., Verhoef, Hans, Comma, Ebrima, Prentice, Andrew M., Moore, Sophie E., Cerami, Carla

Supporting files for "Cash transfers for HIV prevention: A systematic review". (2021) Stoner, Marie C. D., Kilburn, Kelly, Godfrey-faussett, Peter, Ghys, Peter, Pettifor, Audrey E.

Therapy codelist - CPRD GOLD - antihypertensives. (2021) Strongman, Helen

STATA Do files for "Factors associated with excess mortality in the first wave of COVID-19 pandemic in the UK: a cohort analysis using the Clinical Practice Research Databank". (2021) Strongman, Helen, Carreira, Helena

Clinical codelist - Psoriasis. (2021) Strongman, Helen, Forbes, Harriet, Bhate, Ketaki

Clinical codelist - Rheumatoid Arthritis. (2021) Strongman, Helen, Mansfield, Kate, LSHTM Electronic Health Records team

Molecular characterisation of Crimean-Congo haemorrhagic fever virus detected in African blue ticks feeding on cattle in a Ugandan abattoir. (2021) Stubbs, Samuel CB

Replication Data for: "The impact of IMF conditionality on government health expenditure: A cross-national analysis of 16 West African nations". (2021) Stubbs, Thomas, Kentikelenis, Alexander, Stuckler, David, Mckee, Martin, King, Lawrence

Tight K Pilot Study Dataset. (2021) Sturgess, Joanna, Dodd, Matthew

Data for: "Association between Female Genital Schistosomiasis and HIV-1 incidence: a retrospective cohort study". (2021) Sturt, Amy

Data for: "Cervicovaginal Immune Activation in Zambian Women with Female Genital Schistosomiasis". (2021) Sturt, Amy, Bustinduy, Amaya, Webb, Emily

Data for: "Association between cervical dysplasia and female genital schistosomiasis diagnosed by genital PCR in Zambian women". (2021) Sturt, Amy, Rafferty, Hannah, Bustinduy, Amaya

Data for: "Association of Female Genital Schistosomiasis with the Cervicovaginal Microbiota and Sexually Transmitted Infections in Zambian Women". (2021) Sturt, Amy, Webb, Emily, Bustinduy, Amaya

Eyedeet/Systematic_review. (2021) Suffel, Anne Marie

tomsumner/CORTIS_HR_CE. (2021) Sumner, Tom

Value TB Dataset: costs per direct & ancillary service. (2021) Sweeney, Sedona, Cunnama, Lucy, Laurence, Yoko, Garcia Baena, Ines, Kairu, Angela, Minyewelet, Marta, Eyob, Hiwet, Chatterjee, Susmita, Toshniwal, Manoj, Chikovani, Ivdity, Shingelia, Natia, Capeding, Theo Juhani, Vassall, Anna

Value TB Dataset: costs per intervention. (2021) Sweeney, Sedona, Cunnama, Lucy, Laurence, Yoko, Garcia Baena, Ines, Kairu, Angela, Minyewelet, Marta, Eyob, Hiwet, Chatterjee, Susmita, Toshniwal, Manoj, Chikovani, Ivdity, Shingelia, Natia, Capeding,, Theo Juhani, Vassall, Anna

T

Additional file 1 of A framework for handling missing accelerometer outcome data in trials. (2021) Tackney, Mia S., Cook, Derek G., Stahl, Daniel, Ismail, Khalida, Williamson, Elizabeth, Carpenter, James

Anopheles stephensi mosquitoes as vectors of Plasmodium vivax and falciparum, Horn of Africa, 2019. (2021) Tadesse, Fitsum G., Ashine, Temesgen, Teka, Hiwot, Esayas, Endashaw, Messenger, Louisa A., Chali, Wakweya, Meerstein-Kessel, Lisette, Walker, Thomas, Wolde Behaksra, Sinknesh, Lanke, Kjerstin, Heutink, Roel, Jeffries, Claire L., Mekonnen, Daniel Abebe, Hailemeskel, Elifaged, Tebeje, Surafel K., Tafesse, Temesgen, Gashaw, Abrham, Tsegaye, Tizita, Emiru, Tadele, Kigozi, Simon, Bogale, Eyuel Asemahegn, Yohannes, Gedeon, Kedir, Soriya, Shumie, Girma, Sabir, Senya Asfer, Mumba, Peter, Dengela, Dereje, Kolaczinski, Jan H., Wilson, Anne, Churcher, Thomas S., Chibsa, Sheleme, Murphy, Matthew, Balkew, Meshesha, Irish, Seth, Drakeley, Chris, Gadisa, Endalamaw, Bousema, Teun

KamTan/MediationSimulation. (2021) Tanner, Kamaryn T, Sharples, Linda D, Daniel, Rhian M, Keogh, Ruth H

Data for: "How does the sexual, physical and mental health of young adults not in education, employment or training (NEET) compare to workers and students?". (2021) Tanton, Clare, McDonagh, Lorraine, Cabecinha, Melissa, Clifton, Soazig, Geary, Rebecca, Rait, Greta, Saunders, John, Cassell, Jackie, Bonell, Chris, Mitchell, Kirstin R., Mercer, Catherine H.

johntaz/HDPS-Diagnostics. (2021) Tazare, John

johntaz/HDPS-Stata-Demo. (2021) Tazare, John

Seroprevalence of Chikungunya virus and living conditions in Feira de Santana, Bahia-Brazil. S1 Database. (2021) Teixeira, Maria Glória, Skalinski, Lacita Menezes, Paixao Cruz, Enny S., Costa, Maria da Conceição N., Barreto, Florisneide Rodrigues, Campos, Gubio Soares, Sardi, Silvia Ines, Carvalho, Rejane Hughes, Natividade, Marcio, Itaparica, Martha, Dias, Juarez Pereira, Trindade, Soraya Castro, Teixeira, Bárbara Pereira, Morato, Vanessa, Santana, Eloisa Bahia, Goes, Cristina Borges, Silva, Neuza Santos de Jesus, Santos, Carlos Antonio de Souza Teles, Rodrigues, Laura C., Whitworth, Jimmy

wtennant/rvf_comoros: Supporting data and code for 'Modelling the persistence and control of Rift Valley fever virus in a spatially heterogeneous landscape'. (2021) Tennant, Warren S. D., Cardinale, Eric, Cêtre-Sossah, Catherine, Moutroifi, Youssouf, Le Godais, Gilles, Colombi, Davide, Spencer, Simon E. F., Tildesley, Mike J., Keeling, Matt J., Charafouddine, Onzade, Colizza, Vittoria, Edmunds, W. John, Métras, Raphaëlle

BugBunny/Pathways_to_Low_Fertility. (2021) Timaeus, Ian

BugBunny/oRphanhood. (2021) Timaeus, Ian

RNAseq expression analysis of FACS-sorted macrophages from cxcr3.2 mutant and wt zebrafish larvae. (2021) Torraca, Vincenzo, Sommer, Frida, In 't Veld, Aliede E, Willemse, Joost, Meijer, Annemarie H

U

Additional file 1 of In-silico analysis reveals druggable single nucleotide polymorphisms in angiotensin 1 converting enzyme involved in the onset of blood pressure. (2021) Udosen, Brenda, Soremekun, Opeyemi, Ekenna, Chinwe, Idowu Omotuyi, Olaposi, Chikowore, Tinashe, Nashiru, Oyekanmi, Fatumo, Segun

Additional file 2 of Comparative diagnostic accuracy studies with an imperfect reference standard – a comparison of correction methods. (2021) Umemneku Chikere, Chinyereugo M, Wilson, Kevin J, Allen, A Joy, Vale, Luke

National Survey of Sexual Attitudes and Lifestyles COVID-19 Study, 2020. (2021) University of Glasgow, MRC/CSO Social and Public Health Sciences, University College London, London School of Hygiene and Tropical Medicine

Replication Data for: Prevalence of SARS-CoV-2 Antibodies from a one-year National Serosurveillance of Kenyan Blood Transfusion Donors. (2021) Uyoga, Sophie, Adetifa, Ifedayo M.O., Otiende, Mark, Gitonga, John N., Mugo, Daisy, Nyagwange, James, Karanja, Henry Kibe, Tuju, James, Makale, Johnstone, Aman, Rashid, Mwangangi, Mercy, Amoth, Patrick, Kasera, Kadondi, Ng’ang’a, Wangari, Chege, Evelynn, Yegon, Christine, Kithi, Khamisi, Odhiambo, Elizabeth, Rotich, Thomas, Orgut, Irene, Kihara, Sammy, Bottomley, Christian, Kagucia, Eunice W., Gallagher, Katherine E., Etyang, Anthony, Voller, Shirine, Lambe, Teresa, Wright, Daniel, Barasa, Edwine, Tsofa, Benjamin, Mwangangi, Joseph, Bejon, Philip, Ochola-Oyier, Lynette I., Warimwe, George M., Agweyu, Ambrose, Scott, J. Anthony G.

V

Social contact data for IDPs in Somaliland (2019). (2021) Van Zandvoort, Kevin, Bobe, Mohamed Omer, Hassan, Abdirahman Ibrahim, Abdi, Mohamed Ismail, Ahmed, Mohamed Saed, Warsame, Mohamed Yusuf, Wais, Muna Awil, Diggle, Emma, Satzke, Catherine, Mulholland, Kim, Egeh, Mohamed Mohamoud, Hassan, Mukhtar Muhumed, Hergeeye, Mohamed Abdi, Eggo, Rosalind M., Checchi, Francesco, Flasche, Stefan

Denmark-Codelist-ICD10-AKI-Outcome. (2021) Vestergaard, Søren Viborg

Denmark-Codelist-ICD10-HeartFailure-Outcome. (2021) Vestergaard, Søren Viborg

Denmark-Codelist-ICD10-MyocardialInfarction-Outcome. (2021) Vestergaard, Søren Viborg

Denmark-Codelist-ICD10-Stroke-Outcome. (2021) Vestergaard, Søren Viborg

anavica/mcc_ccattr_NCC. (2021) Vicedo-Cabrera, A. M., Gasparrini, Antonio, Royé, Dominic

W

MalawiFoodSystems_Discrete_choice_experiment. (2021) Walls, Helen

MalawiFoodSystems_Focus_group_discussions. (2021) Walls, Helen

MalawiFoodSystems_Food_market_survey. (2021) Walls, Helen

MalawiFoodSystems_Household_and_individual surveys. (2021) Walls, Helen

MalawiFoodSystems_Key_informant_interviews. (2021) Walls, Helen

reichlab/covidHubUtils. (2021) Wang, Serena Yijin, Stark, Ariane, Evan Ray, Bosse, Nikos, Reich, Nicholas G, Sherratt, Katharine, Shah, Apurv, Wattanachit, Nutcha, Khoale1096, Huang, Yuxin David, Gerding, Aaron, Gruson, Hugo, Cramer, Estee, Shandross, Li, Abbott, Sam, Funk, Sebastian

Reproducible Evidence: Practices to Enhance and Achieve Transparency (REPEAT). (2021) Wang, Shirley V, Sreedhara, Sushama Kattinakere, Schneeweiss, Sebastian, REPEAT Initiative

Clinical codelist - CPRD Gold - dementia diagnoses and administrative codes. (2021) Warren-Gash, Charlotte

Clinical codelist - CPRD Gold - dementia diagnoses and subtypes. (2021) Warren-Gash, Charlotte

Clinical codelist - CPRD Gold - depression. (2021) Warren-Gash, Charlotte

Clinical codelist - CPRD Gold - diabetes. (2021) Warren-Gash, Charlotte

Clinical codelist - CPRD Gold - eye conditions acute and chronic. (2021) Warren-Gash, Charlotte

Clinical codelist - CPRD Gold - stroke. (2021) Warren-Gash, Charlotte

Codelists for "Herpes zoster and dementia risk: a population-based matched cohort study". (2021) Warren-Gash, Charlotte, Davidson, Jennifer, Mcdonald, Helen, Cadogan, Sharon, Forbes, Harriet, Strongman, Helen, Langan, Sinead, Mansfield, Kathryn E., Smeeth, Liam, Muzambi, Rutendo, Shiekh, Suhail, LSHTM EHR Team, .

cmmid/coronavirus_immunity. (2021) Waterlow, Naomi R., Van Leeuwen, Edwin, Davies, Nicholas, Flasche, Stefan, Eggo, Rosalind M.

Neurocognitive outcomes in Malawian children exposed to malaria during pregnancy: An observational birth cohort study. Anonymized dataset, wide format. (2021) Weckman, Andrea M., Conroy, Andrea L., Madanitsa, Mwayiwawo, Gnaneswaran, Bruno, McDonald, Chloe R., Kalilani-Phiri, Linda, Chandna, Jaya, Ali, Doreen, Mwapasa, Victor, Khairallah, Carole, Thwai, Kyaw Lay, Meshnick, Steven R., Taylor, Steve M., ter Kuile, Feiko O., Kain, Kevin C., Gladstone, Melissa

PRIDE 12 month outcome dataset. (2021) Weiss, Helen, Bhat, Bhargav

drlukeallen/NCD-Policy-Implementation. (2021) Wigley, Simon, Holmer, Hampus, Allen, Luke N.

Supplementary information for: "Qualitative study exploring the barriers to menstrual hygiene management faced by adolescents and young people with a disability, and their carers in the Kavrepalanchok district, Nepal". (2021) Wilbur, Jane, Kayastha, Shubha, Mahon, Thérèse, Torondel, Belen, Hameed, Shaffa, Sigdel, Anita, Gyawali, Amrita, Kuper, Hannah

Impact of Isoniazid Preventive Therapy on Tuberculosis incidence among people living with HIV: A secondary data analysis using Inverse Probability Weighting of individuals attending HIV care and treatment clinics in Tanzania. S1 Dataset. (2021) Wilkinson, Katalin Andrea, Maokola, Werner M., Ngowi, Bernard J., Mahande, Michael J., Todd, Jim, Robert, Masanja, Msuya, Sia E.

Decision Modelling for Health Economic Evaluation R Code. (2021) Williams, Jack, Naylor, Nichola, Briggs, Andrew

Loop mediated isothermal amplification as a powerful tool for early diagnosis of hepatitis C virus. (2021) Witkowska McConnell, Weronika, Davis, Chris, Sabir, Suleman R., Garrett, Alice, Bradley-Stewart, Amanda, Jajesniak, Pawel, Reboud, Julien, Xu, Gaolian, Yang, Zhugen, Gunson, Rory, Thomson, Emma C., Cooper, Jonathan

opensafely/anticoagulants-research. (2021) Wong, Angel, Bacon, Seb, Walker, Alex, Davy, Simon, Inglesby, Peter, MacKenna, Brian

Infection Surveillance by Telephone, Early Postpartum (I-STEP). (2021) Woodd, Susannah, Graham, Wendy, Campbell, Oona, Mulokozi, Abdunoor, Manzi, Fatuma

Source data for graphs. (2021) Wright, Kathryn, de Silva, Kumudika, Plain, Karren M, Purdie, Auriol C, Blair, Tamika A, Duggin, Iain G, Britton, Warwick J, Oehlers, Stefan H

miR-206 target prediction results from TargetScan analysis. (2021) Wright, Kathryn, de Silva, Kumudika, Plain, Karren M, Purdie, Auriol C, Blair, Tamika A, Duggin, Iain G, Britton, Warwick J, Oehlers, Stefan H

Table S4 from A global assessment of the impact of school closure in reducing COVID-19 spread. (2021) Wu, Joseph T., Mei, Shujiang, Luo, Sihui, Leung, Kathy, Liu, Di, Lv, Qiuying, Liu, Jian, Li, Yuan, Prem, Kiesha, Jit, Mark, Weng, Jianping, Feng, Tiejian, Zheng, Xueying, Leung, Gabriel M.

Additional file 2 of Genomic surveillance of antimicrobial resistant bacterial colonisation and infection in intensive care patients. (2021) Wyres, Kelly L., Hawkey, Jane, Mirčeta, Mirianne, Judd, Louise M., Wick, Ryan R., Gorrie, Claire L., Pratt, Nigel F., Garlick, Jill S., Watson, Kerrie M., Pilcher, David V., McGloughlin, Steve A., Abbott, Iain J., Macesic, Nenad, Spelman, Denis W., Jenney, Adam W. J., Holt, Kathryn E.

Y

lwyakob/COVIDquarantine. (2021) Yakob, Laith

Unique characteristics of new complete blood count parameters, the Immature Platelet Fraction and the Immature Platelet Fraction Count, in dengue patients. (2021) Yasuda, Ikkoh, Saito, Nobuo, Suzuki, Motoi, Umipig, Dorcas Valencia, Solante, Rontgene M., Guzman, Ferdinand De, Sayo, Ana Ria, Yasunami, Michio, Koizumi, Nobuo, Kitashoji, Emi, Sakashita, Kentaro, Ng, Chris Fook Sheng, Smith, Chris, Ariyoshi, Koya

Z

DataSheet_1_Genetic Correlation and Bidirectional Causal Association Between Type 2 Diabetes and Pulmonary Function.xlsx. (2021) Zhu, Jiahao, Zhao, Huanling, Chen, Dingwan, Tse, Lap Ah, Kinra, Sanjay, Li, Yingjun

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