A

Abbott, S and Funk, S (2021). epiforecasts/covid19.sgene.utla.rt. [Data Collection]. Github. https://github.com/epiforecasts/covid19.sgene.utla.rt

B

Bancroft, D, Power, G, Jones, R, Massad, E, Bernstein Iriat, J, Preet, R, Kinsman, J and Logan, J (2021). ZikaPLAN – Research tools used for focus group discussion and interviews. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002097.

Baptiste, P and Tomlinson, LA (2021). Code lists for: "Real-world effects of ACE inhibitors and Angiotensin Receptor Blockers: protocol for an emulation study of the ONTARGET trial using electronic health records". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002112.

Belesova, K, Callaghan, M, Minx, J, Creutzig, F, Turcu, C, Hutchinson, E, Milner, J, Crane, M, Haines, A, Davies, M and Wilkinson, P (2021). Search strategies for: "Climate action for health and wellbeing in cities: a protocol for the systematic development of a database of peer-reviewed studies using machine learning methods". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002094.

Bhaskaran, K (2021). Clinical codelist - Smoking status read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002081.

Bhaskaran, K and Inglesby, P (2021). opensafely/covid-vs-noncovid-deaths-research. [Data Collection]. Github. https://github.com/opensafely/covid-vs-noncovid-deaths-research

Bhopal, SS, Roy, R, Verma, D, Kumar, D, Khan, B, Soremekun, S, Oates, J, Divan, G and Kirkwood, BR (2021). Dataset for: Using the Mothers Object Relations Scale for early childhood development research in rural India. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002095.

Bousema, T, Meibalan, E, Barry, A, Gibbins, M, Awandu, S, Meerstein-Kessel, L, Achar, F, Bopp, S, Moxon, C, Diarra, A, Debe, S, Ouedraogo, N, Barry-Some, I, Badoum, E, Fagnima, T, Lanke, K, Goncalves, B, Bradley, J, Wirth, D, Drakeley, C, Guelbeogo, W, Tiono, A, Marti, M, Gibbins, MP, Achcar, F, Ouédraogo, N, Badoum, ES, Fagnima, T, Gonçalves, BP, Guelbeogo, WM and Tiono, AB (2021). Plasmodium falciparum gametocyte density and infectivity in peripheral blood and skin tissue of naturally infected parasite carriers in Burkina Faso. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.g1jwstqmk

Bower, H, el Karsany, M, Adam, Abd Alhadi Adam Hussein, Idriss, MI, Alzain, MA, Alfakiyousif, MEA, Mohamed, R, Mahmoud, I, Albadri, O, Mahmoud, SAA, Abdalla, OI, Eldigail, M, Elagib, N, Arnold, U, Gutierrez8, B, Pybus, OG, Carter, DP, Pullan, ST, Jacob, ST, Abdallah, TM, Gannon, B and Fletcher, TE (2021). Data for: "Kankasha in Kassala: a prospective observational cohort study of the clinical characteristics, epidemiology, genetic origin, and chronic impact of the 2018 epidemic of Chikungunya virus infection in Kassala, Sudan". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002018.

C

Cortes, T (2021). E-MTAB-8835 - Ribosome profiling of Mycobacterium tuberculosis under nutrient starvation. [Data Collection]. ArrayExpress. https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-8835/

D

Davidson, J, Warren-Gash, C, Mcdonald, H, Banerjee, A and Smeeth, L (2021). Codelists for: "Ethnic differences in the incidence of clinically diagnosed influenza: an England population-based cohort study 2008-2018". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002102.

Davies, NG, Abbott, S, Barnard, RC, Jarvis, CI, Kucharski, AJ, Munday, J, Pearson, CAB, Russell, TW, Tully, DC, Washburne, AD, Wenseleers, T, Gimma, A, Waites, W, Wong, KL, van Zandvoort, K, Silverman, JD, Diaz-Ordaz, K, Keogh, R, Eggo, RM, Funk, S, Jit, M, Atkins, KE and Edmunds, WJ (2021). Analysis data and code for "Estimated transmissibility and impact of SARS-CoV-2 Variant of Concern 202012/01 in England". [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4549674

Davies, NG, Abbott, S, Barnard, RC, Jarvis, CI, Kucharski, AJ, Munday, J, Pearson, CAB, Russell, TW, Tully, DC, Washburne, AD, Wenseleers, T, Gimma, A, Waites, W, Wong, KL, van Zandvoort, K, Silverman, JD, Diaz-Ordaz, K, Keogh, R, Eggo, RM, Funk, S, Jit, M, Atkins, KE and Edmunds, WJ (2021). Analysis data and code for "Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England". [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.4562961

Davies, NG, Jarvis, CI, CMMID COVID-19 Working Group, Edmunds, WJ, Jewell, NP, Diaz-Ordaz, K and Keogh, RH (2021). Increased mortality in community-tested cases of SARS-CoV-2 lineage B.1.1.7. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4579856

E

Enria, L, Waterlow, N, Rogers, N, Brindle, H, Lal, S, Eggo, RM, Lees, S and Roberts, C (2021). Trust and Transparency in times of Crisis: Results from an Online Survey During the First Wave (April 2020) of the COVID-19 Epidemic in the UK - Quantitative Data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002015.

G

Gaskell, KM, Johnson, M, Gould, V, Hunt, A, Stone, NR, Waites, W, Kasstan, B, Chantler, T, Lal, S, Roberts, Ch, Goldblatt, D, Eggo, RM and Marks, M (2021). Extremely high SARS-CoV-2 seroprevalence in a strictly-Orthodox Jewish community in the UK. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Gibbs, H, Jarvis, CI and Eggo, RM (2021). uk_tier_data. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4421648

J

Jarvis, C (2021). jarvisc1/comix_uk_covid_restrictions. [Data Collection]. Github. https://github.com/jarvisc1/comix_uk_covid_restrictions

Jeffries, CL, Cansado-Utrilla, C, Beavogui, AH, Stica, C, Lama, EK, Kristan, M, Irish, SR and Walker, T (2021). Table S2. from Evidence for natural hybridization and novel Wolbachia strain superinfections in the Anopheles gambiae complex from Guinea. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14316674.v1

Johnson, C, Kumwenda, M, Meghji, J, Choko, AT, Phiri, M, Hatzold, K, Baggaley, R, Taegtmeyer, M, Terris-Prestholt, F, Desmond, N and Corbett, EL (2021). Additional file 1 of ‘Too old to test?’: A life course approach to HIV-related risk and self-testing among midlife-older adults in Malawi. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14369899.v1

Jung, S, Endo, A, Kinoshita, R and Nishiura, H (2021). SungmokJung/Projection_Japan_COVID19 v1.0.0. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4576936

K

Kelly-Hope, LA, Sanders, AM, Harding-esch, E, Willems, J, Ahmed, F, Vincer, F and Hill, R (2021). Additional file 2 of Complex emergencies and the control and elimination of neglected tropical diseases in Africa: developing a practical approach for implementing safe and effective mapping and intervention strategies. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14355436.v1

Kelly-Hope, LA, Sanders, AM, Harding-esch, E, Willems, J, Ahmed, F, Vincer, F and Hill, R (2021). Additional file 3 of Complex emergencies and the control and elimination of neglected tropical diseases in Africa: developing a practical approach for implementing safe and effective mapping and intervention strategies. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14355439.v1

Kitonsa, J, Kamacooko, O, Bahemuka, UM, Kibengo, FM, Kakande, A, Wajja, A, Basajja, V, Lumala, A, Ssemwanga, E, Asaba, R, Mugisha, J, Pierce, BF, Shattock, R, Kaleebu, P and Ruzagira, E (2021). Survey data on willingness to participate in COVID-19 vaccine trials among healthcare workers in three Ugandan hospitals. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

L

Limbada, M, Ayles, H and Macleod, D (2021). A Comparison of Different Community Models of ART Delivery Amongst Stable HIV+ Patients in two Urban Settings in Zambia - Study Protocol. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002116.

Lowe, R (2021). Data and R code to accompany 'Combined effects of hydrometeorological hazards and urbanisation on dengue risk in Brazil: a spatiotemporal modelling study'. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4632204

Luque-Fernandez, MA (2021). migariane/Spanish_LifeTablesByDeprivation: Spanish Abridged Life Tables by Deprivation. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4662659

M

Mtenga, B, Beard, J, Todd, J and Urassa, M (2021). Kisesa Tanzania - HIV missing data analysis. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002083.

Mueller, W, Wilkinson, P, Milner, J, Vardoulakis, S, Steinle, S, Pärkkä, J, Parmes, E, Cluitmans, L, Kuijpers, E, Pronk, A, Sarigiannis, D, Karakitsios, S, Chapizanis, D, Maggos, T, Stamatelopoulou, A and Loh, M (2021). Additional file 1 of Neighbourhood and path-based greenspace in three European countries: associations with objective physical activity. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.13719460.v1

Munday, JD, Jarvis, CI, Gimma, A, Wong, KL, van Zandvoort, K, Funk, S and Edmunds, WJ (2021). CoMix - Age structured contact matrices for 9 key periods of the COVID-19 epidemic in England. [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.4677018

Muzambi, R, Bhaskaran, K, Brayne, C, Chaturvedi, N, Smeeth, L and Warren-Gash, C (2021). ISAC Protocol 19_129 - Common infections and incident dementia: a historical cohort study using UK primary and secondary care data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002134.

O

Okere, N, Meta, J, Maokola, W, Martelli, G, van Praag, E, Naniche, D, Gomez, G, Pozniak, A, Rinke de Wit, T, de Klerk, J and Hermans, S (2021). Quality of care in a differentiated HIV service delivery intervention in Tanzania: A mixed methods study. [Data Collection]. Dryad. http://doi.org/10.5061/dryad.bcc2fqzbj

Olaru, ID (2021). Knowledge, attitudes and practices relating to antibiotic use and resistance among prescribers from public primary healthcare facilities in Harare, Zimbabwe. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.66t1g1k1s

Olaru, I (2021). ARGUS clinical and bacteriological outcomes dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002110.

Oliphant, NP, Ray, N, Bensaid, K, Ouedraogo, A, Gali, AY, Habi, O, Maazou, I, Panciera, R, Muñiz, M, Manda, SO, Sy, Z, Jackson, D and Doherty, T (2021). Supplementary Appendix 1c of "Toward a geography of community health workers in Niger: a geospatial analysis". [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.13536779.v5

Ouansafi, I (2021). Friendship Bench problem-solving therapy and its impact on adherence to ART among young people – Interview transcripts. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002002.

O’Hara, G, Mokaya, J, Hau, J, Downs, L, Karabarinde, A, Asiki, G, McNaughton, A, Seeley, J, Matthews, P and Newton, R (2021). Liver function tests and fibrosis scores in a rural population in Africa. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.8292194.v3

P

Pavelka, M, van Zandvoort, K, Abbott, S, Sherratt, K, Majdan, M, Jarcuska, P, Krajci, M, Flasche, S and Funk, S (2021). Data and R code accompanying the manuscript "The impact of population-wide rapid antigen testing on SARS-CoV-2 prevalence in Slovakia". [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4570938

Pearson, CAB, Russell, TW and Kucharski, AJ (2021). cmmid/SA2UK. [Data Collection]. Github. https://github.com/cmmid/SA2UK

Powell-Jackson, T, Kovacs, R and Borghi, J (2021). Code for: "Socioeconomic inequalities in the quality of primary care under Brazil’s national pay-for-performance programme: a longitudinal study of family health teams". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002016.

Q

Quilty, BJ, Hellewell, J, Clifford, S and CMMID COVID-19 working group (2021). R code for: "Confirmatory testing with a second lateral flow test may mitigate false positives at low levels of SARS-CoV-2 prevalence in English schools". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002074.

R

Roberts, C, Rogers, N, Waterlow, N, Brindle, H, Enria, L and Lees, S (2021). Behavioural change towards reduced intensity physical activity is disproportionately prevalent among adults with serious health issues or self-perception of high risk during the UK COVID-19 lockdown. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002091.

S

Safari, W and Baisley, K (2021). Clinic attendance by sex and HIV status in rural South Africa - Data and Code. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Schmidt, W (2021). Data for: "High initial IgG antibody levels against Orientia tsutsugamushi are associated with an increased risk of severe scrub typhus infection". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001998.

Schultze, A, Hulme, W, Davy, S, Mackenna, B, Nightingale, E and Inglesby, P (2021). opensafely/carehomes-short-data-report. [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.4675682

Scriba, TJ, Fiore-Gartland, A, Penn-Nicholson, A, Mulenga, H, Kimbung Mbandi, S, Borate, B, Mendelsohn, SC, Hadley, K, Hikuam, C, Kaskar, M, Musvosvi, M, Bilek, N, Self, S, Sumner, T, White, RG, Erasmus, M, Jaxa, L, Raphela, R, Innes, C, Brumskine, W, Hiemstra, A, Malherbe, ST, Hassan-Moosa, R, Tameris, M, Walzl, G, Naidoo, K, Churchyard, G and Hatherill, M (2021). RISK11 signature scores for the biomarker-guided tuberculosis preventive therapy (CORTIS) randomised controlled trial. [Data Collection]. University of Cape Town. https://doi.org/10.25375/uct.13573337.v1

Scriba, TJ, Fiore-Gartland, A, Penn-Nicholson, A, Mulenga, H, Kimbung Mbandi, S, Borate, B, Mendelsohn, SC, Hadley, K, Hikuam, C, Kaskar, M, Musvosvi, M, Bilek, N, Self, S, Sumner, T, White, RG, Erasmus, M, Jaxa, L, Raphela, R, Innes, C, Brumskine, W, Hiemstra, A, Malherbe, ST, Hassan-Moosa, R, Tameris, M, Walzl, G, Naidoo, K, Churchyard, G and Hatherill, M (2021). RISK11 signature scores for the biomarker-guided tuberculosis preventive therapy (CORTIS) randomised controlled trial. [Data Collection]. University of Cape Town. https://doi.org/10.25375/uct.13573337.v1

Sherratt, K, Bevan, J, Gibbs, H, Finger, F, Hellewell, J, Campbell, P, Funk, S, Boyes, R, Barks, P, , M, Lee, H, Hickson, J and Meakin, S (2021). epiforecasts/covidregionaldata: Beta release. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3957539

Simms, V and Chinoda, S (2021). Effectiveness of a peer-led adolescent mental health intervention on HIV virological suppression and mental health in Zimbabwe: Baseline and Endline questionnaires. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002142.

Simms, V (2021). Friendship Bench trial: lay worker training in problem-solving therapy to reduce symptoms of common mental disorders. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001515.

Simpson, H, Tabah, EN, Phillips, RO, Frimpong, M, Maman, I, Ampadu, E, Timothy, J, Saunderson, P, Pullan, RL and Cano, J (2021). Total area predicted suitable and population living in suitable areas for Buruli ulcer, M. ulcerans, and both, by country in African continent. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0009157.s019

Snetselaar, J, Rowland, M, Manunda, B, Kisengwa, E, Small, G, Malone, D, Mosha, F and Kirby, M (2021). Experimental data of two IRS hut trials with broflanilide 50WP conducted in Moshi, Tanzania. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001948.

T

Tadesse, FG, Ashine, T, Teka, H, Esayas, E, Messenger, LA, Chali, W, Meerstein-Kessel, L, Walker, T, Wolde Behaksra, S, Lanke, K, Heutink, R, Jeffries, CL, Mekonnen, DA, Hailemeskel, E, Tebeje, SK, Tafesse, T, Gashaw, A, Tsegaye, T, Emiru, T, Kigozi, S, Bogale, EA, Yohannes, G, Kedir, S, Shumie, G, Sabir, SA, Mumba, P, Dengela, D, Kolaczinski, JH, Wilson, A, Churcher, TS, Chibsa, S, Murphy, M, Balkew, M, Irish, S, Drakeley, C, Gadisa, E and Bousema, T (2021). Anopheles stephensi mosquitoes as vectors of Plasmodium vivax and falciparum, Horn of Africa, 2019. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.gf1vhhmnt

Tanton, C, McDonagh, L, Cabecinha, M, Clifton, S, Geary, R, Rait, G, Saunders, J, Cassell, J, Bonell, C, Mitchell, KR and Mercer, CH (2021). Data for: "How does the sexual, physical and mental health of young adults not in education, employment or training (NEET) compare to workers and students?". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002155.