A

Abbott, S, Bennett, C, Hickson, J, Allen, J, Sherratt, K and Funk, S (2021). Continent Summary Reproduction Number (R) Based on Reported Cases. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/F9HVNL

Abbott, S, Bennett, C, Hickson, J, Allen, J, Sherratt, K and Funk, S (2021). Local Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Admissions. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/0NYGXE

Abbott, S, Bennett, C, Hickson, J, Allen, J, Sherratt, K and Funk, S (2021). Local Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Deaths. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/UIM3MB

Abbott, S, Bennett, C, Hickson, J, Allen, J, Sherratt, K and Funk, S (2021). National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Belgium Based on Test Results. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/NALGQJ

Abbott, S, Bennett, C, Hickson, J, Allen, J, Sherratt, K and Funk, S (2021). National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Canada Based on Test Results. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/2CNKZJ

Abbott, S, Bennett, C, Hickson, J, Allen, J, Sherratt, K and Funk, S (2021). National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Colombia Based on Test Results. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/GI8EVP

Abbott, S, Bennett, C, Hickson, J, Allen, J, Sherratt, K and Funk, S (2021). National and Subnational Estimates of the Covid 19 Reproduction Number (R) for South Africa Based on Test Results. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/17XS9I

Abbott, S and Bracher, J (2021). epiforecasts/forecast.vocs. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5559016

Abbott, S and Funk, S (2021). epiforecasts/covid19.sgene.utla.rt. [Data Collection]. Zenodo. https://github.com/epiforecasts/covid19.sgene.utla.rt https://doi.org/10.5281/zenodo.5236661

Abbott, S and Fyles, M (2021). martyn1fyles/HouseholdContactTracing. [Data Collection]. Github. https://github.com/martyn1fyles/HouseholdContactTracing

Abbott, S, Hickson, J, Badr, HS, Funk, S, Monticone, P, Ellis, P, Munday, JD, Allen, J, Pearson, CAB, DeWitt, M, Bosse, N and Meakin, S (2021). epiforecasts/EpiNow2. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3957489

Abbott, S and Meakin, S (2021). epiforecasts/covid19.nhs.data: Initial release. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4447465

Abbott, S and Monticone, P (2021). epiforecasts/epinowcast. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5637165

Abbott, S, Sherratt, K and Funk, S (2021). Real-time estimation of the time-varying transmission advantage of Omicron in England using S-Gene Target Status as a Proxy. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5799135

Abotsi, RE, Nicol, MP, McHugh, G, Simms, V, Rehman, AM, Barthus, C, Ngwira, LG, Kwambana-Adams, B, Heyderman, RS, Odland, JØ, Ferrand, RA and Dube, FS (2021). Data from: The impact of long-term azithromycin on antibiotic resistance in HIV-associated chronic lung disease. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.5dv41ns71

Adesanya, E, Cook, S, Mansfield, KE, Crellin, E, Smeeth, L and Herrett, E (2021). Clinical Code list - Read codes for substance abuse. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002185.

Adesanya, E, Cook, S, Mansfield, KE, Crellin, E, Smeeth, L and Herrett, E (2021). Clinical code list - Talking therapies. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002186.

Adesanya, E, Cook, S, Mansfield, KE, Crellin, E, Smeeth, L and Herrett, E (2021). Code lists for "Alcohol use recording in people with depression in English primary care". [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002183.

Adesanya, E, Cook, S, Mansfield, KE, Crellin, E, Smeeth, L and Herrett, E (2021). Product codes - Antidepressants. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002184.

Adetifa, IMO, Uyoga, S, Gitonga, JN, Mugo, D, Otiende, M, Nyagwange, J, Karanja, HK, Tuju, J, Wanjiku, P, Aman, R, Mwangangi, M, Amoth, P, Kasera, K, Ng’ang’a, W, Rombo, C, Yegon, C, Kithi, K, Odhiambo, E, Rotich, T, Orgut, I, Kihara, S, Bottomley, C, Kagucia, EW, Gallagher, KE, Etyang, A, Voller, S, Lambe, T, Wright, D, Barasa, E, Tsofa, B, Bejon, P, Ochola-Oyier, LI, Agweyu, A, Scott, JAG and Warimwe, GM (2021). Replication Data for: Temporal trends of SARS-CoV-2 seroprevalence in transfusion blood donors during the first wave of the COVID-19 epidemic in Kenya. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/FQUNVD

Alexander, N, Carabali, M and Lim, JK (2021). Data for: "Estimating force of infection from serologic surveys with imperfect tests". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002252.

Alobo, M, Mgone, C, Wesonga, CA, Lawn, JE, Ezeaka, C, Okong, P, Temmerman, M, Molineux, E, Malata, A, Wazny, K and Kariuki, T (2021). Research priorities in maternal and neonatal health in Africa: results using the Child Health and Nutrition Research Initiative method involving over 900 experts across the continent. [Data Collection]. OSF. https://doi.org/10.17605/OSF.IO/38GTU

Amoah, J, Said, S, Rampal, L, Manaf, R, Ibrahim, N, Owusu-Agyei, S and Poku Asante, K (2021). Effects of a school-based intervention to reduce cardiovascular disease risk factors among secondary school students: A cluster-randomized, controlled trial. Working dataset. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0259581.s003

Aninanya, GA, Otupiri, E and Howard, N (2021). Questionnaire for women’s satisfaction survey on antenatal care. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002180.

Anywaine, Z, Lule, SA, Hansen, C, Warimwe, G and Elliott, A (2021). Study investigating the clinical manifestations of Rift Valley fever in humans: Systematic review and meta-analysis. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002178.

Assefa, N, Demissie, L, Teklemarriam, Z, Oundo, JO, Madrid, L, Dessie, Y and Scott, JAG (2021). Replication Data for: Seroprevalence of anti–SARS-CoV-2 antibodies in women attending antenatal care in eastern Ethiopia. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/XIWCXN

Ayieko, P, Hashim, R, Grosskurth, H and Kapiga, S (2021). Hand hygiene intervention to optimise soil transmitted helminths infection control among primary school children: endline survey data from a cluster randomised trial. [Data Collection]. Mendeley Data. https://doi.org/10.17632/9wgnn35jcr.1

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Bancroft, D, Power, G, Jones, R, Massad, E, Bernstein Iriat, J, Preet, R, Kinsman, J and Logan, J (2021). ZikaPLAN – Research tools used for focus group discussion and interviews. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002097.

Band, G, Leffler, EM, Jallow, M, Sisay-Joof, F, Ndila, CM, Macharia, AW, Hubbart, C, Jeffreys, AE, Rowlands, K, Nguyen, T, Goncalves, SM, Ariani, CV, Stalker, J, Pearson, RD, Amato, R, Drury, E, Sirugo, G, D'Alessandro, U, Bojang, KA, Marsh, K, Peshu, N, Conway, DJ, Williams, TN, Rockett, KA and Kwiatkowski, DP (2021). Sample accession list for "Malaria protection due to sickle haemoglobin depends on parasite genotype". [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5723515

Band, G, Leffler, EM, Jallow, M, Sisay-Joof, F, Ndila, CM, Macharia, AW, Hubbart, C, Jeffreys, AE, Rowlands, K, Nguyen, T, Goncalves, SM, Ariani, CV, Stalker, J, Pearson, RD, Amato, R, Drury, E, Sirugo, G, D'Alessandro, U, Bojang, KA, Marsh, K, Peshu, N, Conway, DJ, Williams, TN, Rockett, KA and Kwiatkowski, DP (2021). Summary statistics for association tests between human and Plasmodium falciparum genetic variants in 3,346 severe malaria cases from The Gambia and Kenya. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5722497

Band, G, Leffler, EM, Jallow, M, Sisay-Joof, F, Ndila, CM, Macharia, AW, Hubbart, C, Jeffreys, AE, Rowlands, K, Nguyen, T, Goncalves, SM, Ariani, CV, Stalker, J, Pearson, RD, Amato, R, Drury, E, Sirugo, G, D'Alessandro, U, Bojang, KA, Marsh, K, Peshu, N, Conway, DJ, Williams, TN, Rockett, KA and Kwiatkowski, DP (2021). A dataset of human and Plasmodium falciparum genotypes in severe malaria cases from The Gambia and Kenya. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4973476

Banterle, M, Zhao, Z, Bottolo, L, Richardson, S, Leoncio, W, Lewin, A, Zucknick, M and Zhao, Z (2021). BayesSUR: Bayesian Seemingly Unrelated Regression. [Data Collection]. The Comprehensive R Archive Network. https://cran.r-project.org/package=BayesSUR

Baptiste, P and Tomlinson, LA (2021). Code lists for: "Real-world effects of ACE inhibitors and Angiotensin Receptor Blockers: protocol for an emulation study of the ONTARGET trial using electronic health records". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002112.

Barasa, E, Musiega, A, Hanson, K, Nyawira, L, Mulwa, A, Molyneux, S, Maina, I, Tsofa, B, Normand, C and Jemutai, J (2021). Additional file 1 of Level and determinants of county health system technical efficiency in Kenya: two stage data envelopment analysis. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.17132986.v1

Bauduin, S, Chubaty, A, McIntire, E, Kohli, M and Gruson, H (2021). PredictiveEcology/NetLogoR. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3695051

Beksinska, A, Jama, Z, Kabuti, R, Kungu, M, Babu, H, Nyariki, E, Shah, P, Gwala, D, Oside, D, Kamene, R, Watata, A, Atieno, A, Njau, F, Njeri, E, Orobi, E, Lwingi, I, Nyabuto, C, Okumu, M, Mahero, A, Ngurukiri, P, Irungu, E, Adhiambo, W, Muthoga, P, Kaul, R, Seeley, J, Beattie, TS, Weiss, HA and Kimani, J (2021). Additional file 1 of Prevalence and correlates of common mental health problems and recent suicidal thoughts and behaviours among female sex workers in Nairobi, Kenya. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.16815531.v1

Belesova, K, Callaghan, M, Minx, J, Creutzig, F, Turcu, C, Hutchinson, E, Milner, J, Crane, M, Haines, A, Davies, M and Wilkinson, P (2021). Search strategies for: "Climate action for health and wellbeing in cities: a protocol for the systematic development of a database of peer-reviewed studies using machine learning methods". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002094.

Berrang-Ford, L, Sietsma, AJ, Callaghan, M, Minx, J, Scheelbeek, P, Haddaway, N, Haines, A and Dangour, AD (2021). Dataset for article Berrang-Ford et al. "Systematic mapping of global research on climate and health using machine learning" The Lancet Planetary Health. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4972514

Bhaskaran, K (2021). Clinical codelist - Cancer. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002409.

Bhaskaran, K (2021). Clinical codelist - Smoking status read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002081.

Bhaskaran, K (2021). Risk factor codelist - Smoking. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002412.

Bhaskaran, K and Inglesby, P (2021). opensafely/covid-vs-noncovid-deaths-research. [Data Collection]. Github. https://github.com/opensafely/covid-vs-noncovid-deaths-research

Bhopal, SS, Roy, R, Verma, D, Kumar, D, Khan, B, Soremekun, S, Oates, J, Divan, G and Kirkwood, BR (2021). Dataset for: Using the Mothers Object Relations Scale for early childhood development research in rural India. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002095.

Bidulka, P (2021). England-Codelist-ICD10-Covariates. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002256.

Bidulka, P (2021). England-Codelist-ICD10-Outcomes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002254.

Bidulka, P (2021). England-Codelist-ProductCodes-Covariates. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002255.

Bidulka, P (2021). England-Codelist-ReadCodes-Covariates. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002257.

Bidulka, P and Vestergaard, SV (2021). Codelists for: "Adverse outcomes after partner bereavement in people with reduced kidney function: parallel cohort studies in England and Denmark". [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002263.

Blassel, L, Tostevin, A, Villabona-arenas, CJ, Peeters, M, Hue, S and Gascuel, O (2021). Archive of figure generating data. [Data Collection]. PLOS Computational Biology. https://doi.org/10.1371/journal.pcbi.1008873.s007

Boggs, D, Atijosan-Ayodele, O, Yonso, H, Scherer, N, O'Fallon, T, Deniz, G, Volkan, S, Örücü, A, Pivato, I, Beck, AH, Akıncı, İ, Kuper, H, Foster, A, Patterson, A and Polack, S (2021). Additional file 1 of Musculoskeletal impairment among Syrian refugees living in Sultanbeyli, Turkey: prevalence, cause, diagnosis and need for related services and assistive products. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14457117.v1

Borg, Y, Alsford, S, Zaikin, A and Nesbeth, D (2021). Images of selected cells of the TbGOS02 recombinant Trypanosoma brucei brucei cell line. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14845035.v1

Borg, Y, Alsford, S, Zaikin, A and Nesbeth, D (2021). Sequence of the UbeK trypanosomal degron. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14845035.v1

Borghi, J, Binyaruka, P, Mayumana, I, Lange, S, Somville, V and Maestad, O (2021). Long term effects of payment for performance on maternal and child health outcomes– evidence from Tanzania. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5636645

Bosse, N (2021). nikosbosse/mirmeth: Alpha version. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4968864

Bousema, T (2021). Data from: Higher gametocyte production and mosquito infectivity in chronic compared to incident Plasmodium falciparum infections. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.pc866t1n3

Bousema, T, Meibalan, E, Barry, A, Gibbins, M, Awandu, S, Meerstein-Kessel, L, Achar, F, Bopp, S, Moxon, C, Diarra, A, Debe, S, Ouedraogo, N, Barry-Some, I, Badoum, E, Fagnima, T, Lanke, K, Goncalves, B, Bradley, J, Wirth, D, Drakeley, C, Guelbeogo, W, Tiono, A, Marti, M, Gibbins, MP, Achcar, F, Ouédraogo, N, Badoum, ES, Fagnima, T, Gonçalves, BP, Guelbeogo, WM and Tiono, AB (2021). Plasmodium falciparum gametocyte density and infectivity in peripheral blood and skin tissue of naturally infected parasite carriers in Burkina Faso. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.g1jwstqmk

Bower, H, el Karsany, M, Adam, Abd Alhadi Adam Hussein, Idriss, MI, Alzain, MA, Alfakiyousif, MEA, Mohamed, R, Mahmoud, I, Albadri, O, Mahmoud, SAA, Abdalla, OI, Eldigail, M, Elagib, N, Arnold, U, Gutierrez8, B, Pybus, OG, Carter, DP, Pullan, ST, Jacob, ST, Abdallah, TM, Gannon, B and Fletcher, TE (2021). Data for: "Kankasha in Kassala: a prospective observational cohort study of the clinical characteristics, epidemiology, genetic origin, and chronic impact of the 2018 epidemic of Chikungunya virus infection in Kassala, Sudan". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002018.

Bracher, J, Wolffram, D, Deuschel, J, Görgen, K, Ketterer, J, Ullrich, A, Abbott, S, Barbarossa, M, Bertsimas, D, Bhatia, S, Bodych, M, Bosse, NI, Burgard, J, Castro, L, Fairchild, G, Fuhrmann, J, Funk, S, Gogolewski, K, Gu, Q, Heyder, S, Hotz, T, Kheifetz, Y, Kirsten, H, Krueger, T, Krymova, E, Li, M, Meinke, J, Michaud, I, Niedzielewski, K, Ożański, T, Rakowski, F, Scholz, M, Soni, S, Srivastava, A, Zieliński, J, Zou, D, Gneiting, T and Schienle, M (2021). KITmetricslab/covid19-forecast-hub-de. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4439666

Brand, S and Ojal, J (2021). ojal/KenyaSerology. [Data Collection]. Github. https://github.com/ojal/KenyaSerology

Brellier, F (2021). Code lists for: "Incidence of Lyme disease in the United Kingdom and association with fatigue: a population-based, historical cohort study". [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002625.

Brellier, F (2021). Diagnosis codelist - Lyme disease codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002624.

Brellier, F (2021). Diagnosis/symptom codelist - fatigue codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002623.

Burke, R (2021). rachaelmburke/tbcovidblantyre. [Data Collection]. Github. https://github.com/rachaelmburke/tbcovidblantyre

C

Cadogan, S (2021). Therapy codelist - CPRD GOLD - antiplatelets. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002190.

Cadogan, S and Warren-Gash, C (2021). Clinical codelist - CPRD Gold - chronic kidney disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002686.

Cadogan, S and Warren-Gash, C (2021). Clinical codelist - CPRD Gold - chronic liver disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002685.

Cadogan, S and Warren-Gash, C (2021). Codelists for: "Anticoagulant prescribing in atrial fibrillation and incident dementia: a UK population-based cohort study". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002326.

Castaneda-Guzman, M, Mantilla-Saltos, G, Murray, KA, Settlage, R and Escobar, LE (2021). Methods and Code. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.13708642.v4

Chandler, DJ, Galván-Casas, C, Mitjá, O, Esteban, S, Kafulafula, J, Phiri, T, Navarro-Fernández, Íñigo, Román-Curto, C, Mtenje, H, Thauzeni, G, Harawa, E, Kaluzi, S, Diere, M, Mkandawire, M, Malizani, S, Chifundo, A, Utrera-Busquets, M, Roncero-Riesco, M, López Martín-Prieto, S, Vilanova-Urdániz, I, Petiti, GH, de Gálvez Aranda, MV, No Pérez, N, Rueda Gómez-Calcerrada, M, Iranzo, P, Escalonilla García-Patos, P, de Troya-Martín, M, Romero Gomez, J, Cardeñoso-Alvarez, E, Lucas Truyols, S, Aspe Unanue, L, Bajo del Pozo, C, Comunión Artieda, A, Martínez González, MI, López-López, OF, Moreno-Artero, E, Cubiró, X, Meilán-Sánchez, I, Tomás-Velázquez, A, López-Sánchez, C, Sánchez-Martínez, EM, Edwards, HA, Herrera Morueco, M, Zehe Rubiera, J, Salguero Caldera, L, Blanes-Moreno, U, Uribarren-Movilla, M and Marks, M (2021). Patients attended: Scabies, Impetigo and demographic data. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0009386.s001

Chapman, LAC, Barnard, RC, Russell, TW, Abbott, S, Van Zandvoort, K, Davies, NG and Kucharski, AJ (2021). Unexposed populations and potential COVID-19 burden in European countries as of 21st November 2021. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5772162

Chapman, LAC (2021). LloydChapman/COVID_homeless_modelling. [Data Collection]. Github. https://github.com/LloydChapman/COVID_homeless_modelling

Charvat, H and Belot, A (2021). mexhaz: Mixed Effect Excess Hazard Models. [Data Collection]. The Comprehensive R Archive Network. https://cran.r-project.org/package=mexhaz

Checchi, F, Testa, A, Gimma, A, Koum-Besson, E and Warsame, A (2021). francescochecchi/mortality_small_area_estimation. [Data Collection]. Github. https://github.com/francescochecchi/mortality_small_area_estimation

Chowdhury, S, Pozzer, A, Haines, A, Klingmüller, K, Münzel, T, Paasonen, P, Sharma, A, Venkataraman, C and Lelieveld, J (2021). Global health burden of ambient PM2.5 and the role of anthropogenic black carbon and organic aerosols. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5131659

Chuengsatiansup, K, Chawraingern, S, Limsawart, W, Urapeepathanapong, T, Chanchamsang, U and Chandler, C (2021). Anti-microbials in Society - Thailand, Study 2, 2017-2021. [Data Collection]. UK Data Service, Colchester, Essex, United Kingdom. https://doi.org/10.5255/UKDA-SN-855072

Cleary, F, Nitsch, D and Prieto, D (2021). Raw data for a systematic review of statistical methodologies to evaluate progression of chronic kidney disease using electronic healthcare records. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002628.

Cohn, S, Borgstrom, E, Driessen, A and Dumble, K (2021). Forms of Care: Ethnographic Interviews About Palliative Care With Health Professionals in London, 2017-2021. [Data Collection]. UK Data Service, Colchester, Essex, United Kingdom. https://doi.org/10.5255/UKDA-SN-855055

Colón-González, FJ, Soares Bastos, L, Hofmann, B, Hopkin, A, Harpham, Q, Crocker, T, Amato, R, Ferrario, I, Moschini, F, James, S, Malde, S, Ainscoe, E, Sinh Nam, V, Quang Tan, D, Duc Khoa, N, Harrison, M, Tsarouchi, G, Lumbroso, D, Brady, OJ and Lowe, R (2021). R code for the paper "Probabilistic seasonal dengue forecasting in Vietnam: A modelling study using superensembles". [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4740093

Colón-González, FJ, Sewe, MO, Tompkins, AM, Sjödin, H, Casallas, A, Rocklöv, J, Caminade, C and Lowe, R (2021). Projecting the risk of mosquito-borne diseases in a warmer and more urbanised world: a multi-model multi-scenario intercomparison study. [Data Collection]. OSF. https://doi.org/10.17605/OSF.IO/HPAEY

Cortes, T (2021). E-MTAB-8835 - Ribosome profiling of Mycobacterium tuberculosis under nutrient starvation. [Data Collection]. ArrayExpress. https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-8835/

Countdown to 2030 Health Financing Data Analysis Centre (2021). Aid for reproductive, maternal, newborn and child health: data generated using the Muskoka2 method, 2002-2019. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002272.

Countdown to 2030 Health Financing Data Analysis Centre (2021). Muskoka2 estimates of aid for reproductive, maternal, newborn, and child health. [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002273.

Courtin, E, Greener, R, Weiss, J, Ware, EB, Dowd, JB and Rehkopf, D (2021). Analysis for: The changing relationship between genetic risk and cognitive decline across birth cohorts. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4982053

Cox, S and Faguer, B (2021). Patterns of non-communicable comorbidities at start of tuberculosis treatment in three regions of the Philippines: St-ATT cohort baseline data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002476.

Cox, S and Faguer, B (2021). St-ATT: The Starting Anti-Tuberculosis Treatment Cohort in the Philippines. [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002313.

Cresswell, F and Quinn, C (2021). Neurocognitive outcomes of HIV-associated tuberculous meningitis dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002372.

Cunha, MG, Silva, ES, Sepúlveda, N, Costa, SPT, Saboia, TC, Guerreiro, JF, Póvoa, MM, Corran, PH, Riley, E and Drakeley, CJ (2021). Serologically Defined Variations in Malaria Endemicity in Pará State, Brazil. Supplementary dataset. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0260513.s001

D

Damilola R. Oresegun, Peter Thorpe, Benavente, E, Campino, S, Fauzi Muh, Moon, RW, Clark, T and Cox-Singh, J (2021). Getting close to nature – Plasmodium knowlesi reference genome sequences from contemporary clinical isolates. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5598263

Davidson, J (2021). Clinical codelist - CPRD Aurum - hypertension. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002194.

Davidson, J (2021). Clinical codelist - CPRD Aurum - major adverse cardiovascular event. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002196.

Davidson, J (2021). Clinical codelist - CPRD GOLD - Hypertension. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002195.

Davidson, J (2021). Clinical codelist - CPRD GOLD - Major Adverse Cardiovascular Event. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002197.

Davidson, J (2021). Clinical codelist - HES - Major Adverse Cardiovascular Event. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002198.

Davidson, J (2021). Clinical codelist - Hypertension. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002396.

Davidson, J (2021). Therapy codelist - CPRD Aurum - Statins. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002199.

Davidson, J (2021). Therapy codelist - CPRD Aurum - antihypertensives. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002187.

Davidson, J (2021). Therapy codelist - CPRD Aurum - antiplatelets. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002189.

Davidson, J (2021). Therapy codelist - CPRD GOLD - Statins. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002200.

Davidson, JA (2021). jenAdavidson/cvrisk_mace_ari. [Data Collection]. Github. https://github.com/jenAdavidson/cvrisk_mace_ari

Davidson, JA, Warren-Gash, C and Mcdonald, H (2021). Clinical codelist - CPRD Gold - HIV. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002695.

Davidson, J and Warren-Gash, C (2021). Clinical codelist - CPRD Aurum - acute respiratory infection and influenza/influenza-like-illness codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002191.

Davidson, J and Warren-Gash, C (2021). Clinical codelist - CPRD Aurum - asthma. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002208.

Davidson, J and Warren-Gash, C (2021). Clinical codelist - CPRD Aurum - chronic neurological disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002216.

Davidson, J and Warren-Gash, C (2021). Clinical codelist - CPRD GOLD - Asthma. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002209.

Davidson, J and Warren-Gash, C (2021). Clinical codelist - CPRD GOLD - acute respiratory infection and influenza/influenza-like-illness codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002192.

Davidson, J and Warren-Gash, C (2021). Clinical codelist - CPRD GOLD - chronic neurological disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002217.

Davidson, J and Warren-Gash, C (2021). Clinical codelist - Dementia. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002402.

Davidson, J and Warren-Gash, C (2021). Clinical codelist - HES - acute respiratory infection and influenza/influenza-like-illness codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002193.

Davidson, J and Warren-Gash, C (2021). Therapy codelist - CPRD Aurum - Asthma. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002210.

Davidson, J and Warren-Gash, C (2021). Therapy codelist - CPRD GOLD - Asthma. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002211.

Davidson, J, Warren-Gash, C, Banerjee, A, McDonald, H and Smeeth, L (2021). Codelists for: "The effect of influenza vaccine on acute cardiovascular events in people with varying cardiovascular risk: a self-controlled case-series study in England, 2008-2019". [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002675.

Davidson, J, Warren-Gash, C, Banerjee, A and Smeeth, L (2021). Clinical codelist - CPRD Aurum - cardiovascular disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002220.

Davidson, J, Warren-Gash, C, Banerjee, A and Smeeth, L (2021). Clinical codelist - CPRD GOLD - cardiovascular disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002221.

Davidson, J, Warren-Gash, C, Banerjee, A, Smeeth, L, Evans, D and Clay, S (2021). Clinical codelist - Cerebrovascular disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002394.

Davidson, J, Warren-Gash, C, Banerjee, A, Smeeth, L, Evans, D and Clay, S (2021). Clinical codelist - Chronic cardiac disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002392.

Davidson, J, Warren-Gash, C and Cadogan, S (2021). Clinical codelist - learning disabilities. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002401.

Davidson, J, Warren-Gash, C, Gayle, A, Strongman, H, Nissen, F and LSHTM Electronic Health Record team (2021). Clinical codelist - Asthma. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002397.

Davidson, J, Warren-Gash, C and McDonald, H (2021). Clinical codelist - CPRD Gold - permanent immunodeficiency conditions. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002704.

Davidson, J, Warren-Gash, C and McDonald, H (2021). Clinical codelist - CPRD Gold - solid organ transplant. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002709.

Davidson, J, Warren-Gash, C and McDonald, H (2021). Therapy codelist - CPRD Gold - immunosuppressants. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002717.

Davidson, J, Warren-Gash, C and Mcdonald, H (2021). Clinical codelist - CPRD Aurum - Immuosuppressive conditions. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002234.

Davidson, J, Warren-Gash, C and Mcdonald, H (2021). Clinical codelist - CPRD Aurum - chronic kidney disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002218.

Davidson, J, Warren-Gash, C and Mcdonald, H (2021). Clinical codelist - CPRD Aurum - chronic liver disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002212.

Davidson, J, Warren-Gash, C and Mcdonald, H (2021). Clinical codelist - CPRD Aurum - chronic respiratory disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002214.

Davidson, J, Warren-Gash, C and Mcdonald, H (2021). Clinical codelist - CPRD Aurum - spleen dysfunction. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002238.

Davidson, J, Warren-Gash, C and Mcdonald, H (2021). Clinical codelist - CPRD GOLD - Immuosuppressive conditions. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002232.

Davidson, J, Warren-Gash, C and Mcdonald, H (2021). Clinical codelist - CPRD GOLD - Influenza vaccine. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002227.

Davidson, J, Warren-Gash, C and Mcdonald, H (2021). Clinical codelist - CPRD GOLD - Pneumococcal vaccine. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002235.

Davidson, J, Warren-Gash, C and Mcdonald, H (2021). Clinical codelist - CPRD GOLD - chronic liver disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002213.

Davidson, J, Warren-Gash, C and Mcdonald, H (2021). Clinical codelist - CPRD GOLD - chronic respiratory disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002215.

Davidson, J, Warren-Gash, C and Mcdonald, H (2021). Clinical codelist - CPRD GOLD - spleen dysfunction. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002239.

Davidson, J, Warren-Gash, C and Mcdonald, H (2021). Clinical codelist - CPRD Gold - aplastic anaemia. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002681.

Davidson, J, Warren-Gash, C and Mcdonald, H (2021). Clinical codelist - CPRD Gold - bone marrow or stem cell transplant. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002683.

Davidson, J, Warren-Gash, C and Mcdonald, H (2021). Clinical codelist - CPRD Gold - chemotherapy and radiotherapy. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002684.

Davidson, J, Warren-Gash, C and Mcdonald, H (2021). Clinical codelist - CPRD Gold - other immunodeficiency conditions. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002703.

Davidson, J, Warren-Gash, C and Mcdonald, H (2021). Clinical codelist - chronic liver disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002404.

Davidson, J, Warren-Gash, C and Mcdonald, H (2021). Therapy codelist - CPRD Aurum - Diabetes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002224.

Davidson, J, Warren-Gash, C and Mcdonald, H (2021). Therapy codelist - CPRD Aurum - Immunosuppressants. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002230.

Davidson, J, Warren-Gash, C and Mcdonald, H (2021). Therapy codelist - CPRD GOLD - Immunosuppressants. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002231.

Davidson, J, Warren-Gash, C and Mcdonald, H (2021). Therapy codelist - CPRD GOLD - Pneumococcal vaccine. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002237.

Davidson, J, Warren-Gash, C and Mcdonald, H (2021). Therapy codelist - CPRD Gold - oral steroids. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002702.

Davidson, J, Warren-Gash, C, Mcdonald, H, Banerjee, A, Gayle, A, Strongman, H, Evans, D, Clay, S, Forbes, H, Mansfield, KE, Carreira, H, Bhaskaran, K, Bhate, K, Smeeth, L, Dedman, D, Mathur, R, Cadogan, S and LSHTM EHR team (2021). Codelists for: "Factors associated with excess mortality in the first wave of COVID-19 pandemic in the UK: a cohort analysis using the Clinical Practice Research Databank". [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002269.

Davidson, J, Warren-Gash, C, Mcdonald, H, Banerjee, A and Smeeth, L (2021). Clinical codelist - CPRD Aurum - diabetes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002222.

Davidson, J, Warren-Gash, C, Mcdonald, H, Banerjee, A and Smeeth, L (2021). Clinical codelist - CPRD GOLD - Diabetes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002223.

Davidson, J, Warren-Gash, C, Mcdonald, H, Banerjee, A and Smeeth, L (2021). Therapy codelist - CPRD GOLD - Diabetes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002225.

Davidson, J, Warren-Gash, C, Mcdonald, H, Banerjee, A, Smeeth, L, Evans, D and Clay, S (2021). Clinical codelist - Diabetes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002407.

Davidson, J, Warren-Gash, C, Mcdonald, H, Banerjee, A, Smeeth, L and Strongman, H (2021). Codelists for: "Underlying cardiovascular risk and major adverse cardiovascular events after acute respiratory infection: a population-based cohort study of over 4.2 million individuals in England, 2008-2018". [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002240.

Davidson, J, Warren-Gash, C, Mcdonald, H, Banerjee, A, Smeeth, L, Strongman, H and Cadogan, S (2021). Codelists for: "Ethnic differences in the incidence of clinically diagnosed influenza: an England population-based cohort study 2008-2018". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002102.

Davidson, J, Warren-Gash, C, Mcdonald, H, Evans, D and Clay, S (2021). Clinical codelist - chronic kidney disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002406.

Davidson, J, Warren-Gash, C, Mcdonald, H, Evans, D and Clay, S (2021). Clinical codelists - Immunosuppression. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002410.

Davidson, J, Warren-Gash, C, Mcdonald, H, Gayle, A, Evans, D and Clay, S (2021). Clinical codelist - Chronic respiratory disease other than asthma. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002398.

Davidson, J, Warren-Gash, C, Mcdonald, H, Smeeth, L and Banerjee, A (2021). Clinical codelist - CPRD Aurum - Pneumococcal vaccine. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002233.

Davidson, J, Warren-Gash, C, Mcdonald, H, Smeeth, L and Banerjee, A (2021). Therapy codelist - CPRD Aurum - Influenza vaccine. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002228.

Davidson, J, Warren-gash, C and LSHTM Electronic Health Records team (2021). Clinical codelist - chronic neurological conditions other than dementia. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002403.

Davidson, J, Warren-gash, C, Mcdonald, H, Evans, D and Clay, S (2021). Clinical codelist - chronic liver disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002405.

Davies, NG (2021). CSV-format data for: Increased mortality in community-tested cases of SARS-CoV-2 lineage B.1.1.7. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5105920

Davies, NG (2021). nicholasdavies/amr-competition-diversity: Full release for publication. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5116443

Davies, NG, Abbott, S, Barnard, RC, Jarvis, CI, Kucharski, AJ, Munday, J, Pearson, CAB, Russell, TW, Tully, DC, Washburne, AD, Wenseleers, T, Gimma, A, Waites, W, Wong, KL, van Zandvoort, K, Silverman, JD, Diaz-Ordaz, K, Keogh, R, Eggo, RM, Funk, S, Jit, M, Atkins, KE and Edmunds, WJ (2021). Analysis data and code for "Estimated transmissibility and impact of SARS-CoV-2 Variant of Concern 202012/01 in England". [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4549674

Davies, NG, Abbott, S, Barnard, RC, Jarvis, CI, Kucharski, AJ, Munday, J, Pearson, CAB, Russell, TW, Tully, DC, Washburne, AD, Wenseleers, T, Gimma, A, Waites, W, Wong, KL, van Zandvoort, K, Silverman, JD, Diaz-Ordaz, K, Keogh, R, Eggo, RM, Funk, S, Jit, M, Atkins, KE and Edmunds, WJ (2021). Analysis data and code for "Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England". [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.4562961

Davies, NG, Jarvis, CI, CMMID COVID-19 Working Group, Edmunds, WJ, Jewell, NP, Diaz-Ordaz, K and Keogh, RH (2021). Increased mortality in community-tested cases of SARS-CoV-2 lineage B.1.1.7. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4579856

De Figueiredo, A (2021). Global intent to accept COVID-19 vaccines. [Data Collection]. OSF. https://osf.io/8vezs

De figueiredo, A (2021). Impact of vaccine passports on inclination to accept COVID-19 vaccinations in the UK. [Data Collection]. OSF. https://osf.io/xh9p7/

Dedman, D, Carreira, H and Strongman, H (2021). Clinical codelist - Cancer. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002408.

Dodds, C, Keogh, P, Bourne, A, McDaid, L, Squire, C, Weatherburn, P and Young, I (2021). Supplemental material for: The Long and Winding Road: Archiving and Re-Using Qualitative Data from 12 Research Projects Spanning 16 Years. [Data Collection]. SAGE Journals. https://doi.org/10.25384/SAGE.12489428.v1

Dorman, M, Thomson, NR and Campos, J (2021). Genomic contextualisation of ancient DNA molecular data from an Argentinian fifth pandemic Vibrio cholerae infection. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14384225.v1

Dorman, M, Thomson, NR and Campos, J (2021). Supporting data for "Genomic contextualisation of ancient DNA molecular data from an Argentinian fifth pandemic Vibrio cholerae infection". [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.13636577.v1

Doughty, H, Milner-Gulland, EJ, Lee, JSH, Oliver, K, Carrasco, LR and Veríssimo, D (2021). Raw data for: "Evaluating a large-scale online behaviour change intervention aimed at wildlife product consumers in Singapore". [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0248144.s003

Drake, C, Hernandez, A, Liu, Y, Schwartz, AH and Sundaram, M (2021). yangclaraliu/armslist_scraping. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5185707

Dyson, ZA and Holt, KE (2021). katholt/genotyphi: GenoTyphi v1.9.1. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4707613

E

Ediriweera, DS, Kasthuriratne, A, Pathmeswaran, A, Gunawardene, NK, Jayamanne, SF, Murray, K, Iwamura, T, Isbister, G, Dawson, A, Lalloo, DG, de Silva, HJ and Diggle, PJ (2021). Evaluating spatiotemporal dynamics of snakebite in Sri Lanka: Monthly incidence mapping from a national representative survey sample. S1 Data. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0009447.s009

Endo, A, Uchida, M, Hayashi, N, Liu, Y, Atkins, KE, Kucharski, AJ and Funk, S (2021). akira-endo/schooldynamics_FluMatsumoto14-15: Within and between classroom transmission patterns of seasonal influenza among primary school students in Matsumoto city, Japan. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5604502

Engl, M and Kerac, M (2021). Management of at-risk mothers and infants < 6 months in national and international SAM guidelines: AGREE scoring of guidelines and guideline content spreadsheet. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002534.

Engl, M and Kerac, M (2021). Presence of recommendations for the management of malnourished children living with disabilities in national and international SAM guidelines: Interview transcripts and guideline content spreadsheet. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002513.

Enria, L (2021). Qualitative Data on Integrating Social Science in Community Engagement for Vaccine Hesitancy in Sierra Leone, 2019-2020. [Data Collection]. UK Data Service. https://doi.org/10.5255/ukda-sn-8841-1

Enria, L, Waterlow, N, Rogers, N, Brindle, H, Lal, S, Eggo, RM, Lees, S and Roberts, C (2021). Trust and Transparency in times of Crisis: Results from an Online Survey During the First Wave (April 2020) of the COVID-19 Epidemic in the UK - Quantitative Data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002015.

Erens, B, Williams, L, Exley, J, Ettelt, S, Manacorda, T, Hajat, S and Mays, N (2021). Data collection tools for: "Public attitudes to, and behaviours taken during, hot weather by vulnerable groups: results from a national survey in England.". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://datacompass.lshtm.ac.uk/id/eprint/2553/

Evans, B and Jombart, T (2021). Analysis of changes in worldwide routine immunisation coverage in 2020. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5746754

Eyre, MT, Burns, R, Kirkby, V, Smith, C, Denaxas, S, Nguyen, V, Hayward, A, Shallcross, L, Fragaszy, E and Aldridge, RW (2021). Impact of baseline cases of cough and fever on UK COVID-19 diagnostic testing rates: estimates from the Bug Watch community cohort study - Supplementary material, code and data. [Data Collection]. OSF. https://doi.org/10.17605/OSF.IO/5J6DY

F

Fabbri, C and Leurent, B (2021). Data for Preventing Violence Against Children in Schools (PVACS) main trial analyses. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002474.

Falconer, J and Bonell, C (2021). Search strategies for: Whole-school interventions promoting student commitment to school to prevent substance abuse and violence and improve educational attainment. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002543.

Fennell, TG, Blackwell, GA, Thomson, NR and Dorman, MJ (2021). Supporting data for "chiA and gbpA genes are not uniformly distributed amongst diverse Vibrio cholerae". [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.13169189

Fennell, TG, Blackwell, GA, Thomson, NR and Dorman, MJ (2021). gbpA and chiA genes are not uniformly distributed amongst diverse Vibrio cholerae. [Data Collection]. Microbiology Society. https://doi.org/10.6084/m9.figshare.14398688.v1

Fielding, K (2021). Adjunctive host-directed therapies for pulmonary tuberculosis: data from a prospective, open-label, phase 2, randomised controlled trial. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002277.

Fielding, K (2021). Data set for describing resistance and identifying risk factors for resistance to Mycobacterium tuberculosis, among highly TB exposed gold miners in South Africa. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002424.

Forbes, H (2021). Clinical codelist - CPRD Gold - haematological malignancies. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002693.

Forbes, H (2021). Clinical codelist - CPRD Gold - herpes zoster. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002710.

Forbes, H (2021). Risk factor codelist - smoking. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002411.

Forbes, H (2021). Therapy codelist - Antiviral codes for zoster treatment. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002682.

Forbes, H (2021). Therapy codelist - CPRD Gold - topical eye antibiotics. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002707.

Forbes, H (2021). Therapy codelist - CPRD Gold - topical eye antivirals. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002708.

Forbes, H and Carreira, H (2021). Risk factor codelist - Body Mass Index (BMI). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002413.

Forbes, H and Strongman, H (2021). Clinical codelist - CPRD Gold - chronic obstructive pulmonary disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002687.

Fragki, S, Dirven, H, Fletcher, T, Grasl-Kraupp, B, Bjerve Gützkow, K, Hoogenboom, R, Kersten, S, Lindeman, B, Louisse, J, Peijnenburg, A, Piersma, AH, Princen, HMG, Uhl, M, Westerhout, J, Zeilmaker, MJ and Luijten, M (2021). Systemic PFOS and PFOA exposure and disturbed lipid homeostasis in humans: what do we know and what not? [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14420432.v2

Fu, H and Abbas, KM (2021). lshtm-vimc/dynamice. [Data Collection]. Github. https://github.com/lshtm-vimc/dynamice

Fuehrer, H, Dombrowski, JG, Barateiro, A, Peixoto, EPM, Barros, André Boler Cláudio da Silva, Souza, RMd, Clark, TG, Campino, S, Wrenger, C, Wunderlich, G, Palmisano, G, Epiphanio, S, Gonçalves, LA and Marinho, CRF (2021). Study database for: "Adverse pregnancy outcomes are associated with Plasmodium vivax malaria in a prospective cohort of women from the Brazilian Amazon". [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0009390.s009

Fujisawa, K, Silcott-Niles, C, Simonson, P, Lamattina, D, Humeres, CA, Bhattacharyya, T, Mertens, P, Thunissen, C, O’Rourke, V, Pańczuk, M, Whitworth, JA, Salomón, OD and Miles, MA (2021). Consolidated results of dogs in the 2018 and 2019 studies. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0009552.s001

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Galofré-Vilà, G, Meissner, CM, Mckee, M and Stuckler, D (2021). Austerity and the rise of the nazi party. [Data Collection]. Inter-university Consortium for Political and Social Research. https://doi.org/10.3886/E125101V1

Gaskell, KM, Johnson, M, Gould, V, Hunt, A, Stone, NR, Waites, W, Kasstan, B, Chantler, T, Lal, S, Roberts, Ch, Goldblatt, D, Eggo, RM and Marks, M (2021). Extremely high SARS-CoV-2 seroprevalence in a strictly-Orthodox Jewish community in the UK. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002084.

Gibb, R and Mollentze, N (2021). rorygibb/pathogen_discovery: Viral discovery Biology Letters code. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5714490

Gibbs, H (2021). cmmid/uk_movement_communities_covid. [Data Collection]. Github. https://github.com/cmmid/uk_movement_communities_covid

Gibbs, H, Jarvis, CI and Eggo, RM (2021). uk_tier_data. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4421648

Gibbs, H, Waterlow, NR, Cheshire, J, Danon, L, Liu, Y, Grundy, C, Kucharski, AJ and Eggo, RM (2021). Population disruption: estimating changes in population distribution in the UK during the COVID-19 pandemic - Estimates for Local Authority Districts. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5013619

Gibson, AJ, Passmore, IJ, Faulkner, V, Xia, D, Nobeli, I, Stiens, J, Willcocks, S, Clark, TG, Sobkowiak, B, Werling, D, Villarreal-Ramos, B, Wren, BW and Kendall, SL (2021). Table_1_Probing Differences in Gene Essentiality Between the Human and Animal Adapted Lineages of the Mycobacterium tuberculosis Complex Using TnSeq.XLSX. [Data Collection]. Frontiers. https://doi.org/10.3389/fvets.2021.760717.s002

Gimma, A (2021). amygimma/comix_uk_summary_analysis. [Data Collection]. Github. https://github.com/amygimma/comix_uk_summary_analysis

Gimma, A, Wong, KL, Coletti, P and Jarvis, CI (2021). CoMix social contact data (Austria). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4775972

Gimma, A, Wong, KL, Coletti, P and Jarvis, CI (2021). CoMix social contact data (France). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5040870

Gimma, A, Wong, KL, Coletti, P and Jarvis, CI (2021). CoMix social contact data (Italy). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5041112

Gimma, A, Wong, KL, Coletti, P and Jarvis, CI (2021). CoMix social contact data (Poland). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5041128

Gimma, A, Wong, KL, Coletti, P and Jarvis, CI (2021). CoMix social contact data (Portugal). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5041140

Gimma, A, Wong, KL, Coletti, P and Jarvis, CI (2021). CoMix social contact data (Spain). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5040839

Gimma, A, Wong, KL, Van Xandvoort, K, Jarvis, CI and Edmunds, WJ (2021). CoMix social contact data (UK). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4905745

Gimma, A, Wong, KL, Coletti, P and Jarvis, CI (2021). CoMix social contact data (Denmark). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5040530

Gimma, A, Wong, KL, Coletti, P and Jarvis, CI (2021). CoMix social contact data (Greece). [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.5137218

Gimma, A, Wong, KL, Coletti, P and Jarvis, CI (2021). CoMix social contact data (Slovenia). [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.5137239

Glazik, R (2021). Data supporting "A Snapshot of the Practicality of, and Barriers to, Implementation of COVID-19 Interventions: Public Health and Healthcare Workers' Perceptions". [Data Collection]. London School of Hygiene and Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002321.

Gliddon, HD, Kaforou, M, Alikian, M, Habgood-Coote, D, Zhou, C, Oni, T, Anderson, ST, Brent, AJ, Crampin, AC, Eley, B, Heyderman, R, Kern, F, Langford, PR, Ottenhoff, THM, Hibberd, ML, French, N, Wright, VJ, Dockrell, HM, Coin, LJ, Wilkinson, RJ and Levin, M (2021). Identification of Reduced Host Transcriptomic Signatures for Tuberculosis Disease and Digital PCR-Based Validation and Quantification. [Data Collection]. Frontiers in Immunology. https://doi.org/10.3389/fimmu.2021.637164.s001

Glynn, JR, Fielding, K, Mzembe, T, Sichali, L, Banda, L, Mclean, E, Kanjala, C, Crampin, AC, Ponnighaus, J, Warndorff, D and Fine, P (2021). Data for: “BCG revaccination in Malawi: 30-year follow-up of a large, randomised, double-blind placebo-controlled trial”. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002443.

Goncalves, B (2021). Data for: "Estimation of country-level incidence of early-onset invasive Group B Streptococcus disease in infants using Bayesian methods". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002118.

Grant-McAuley, W, Klock, E, Laeyendecker, O, Piwowar-Manning, E, Wilson, E, Clarke, W, Breaud, A, Moore, A, Ayles, H, Kosloff, B, Shanaube, K, Bock, P, Mandla, N, van Deventer, A, Fidler, S, Donnell, D, Hayes, R and Eshleman, SH (2021). Evaluation of multi-assay algorithms for identifying individuals with recent HIV infection: HPTN 071 (PopART). Minimum dataset, seroconverters. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0258644.s004

Greener, R, Lewis, D, Reades, J, Miles, S and Cummins, S (2021). Software and results for: An agent-based model for simulating the impact of social norms on active commuting interventions. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4916753

Gruson, H, Grenié, M, actions-user and Henry, L (2021). Bisaloo/fundiversity: fundiversity. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.5281/zenodo.4761754

Gröschel, MI, Owens, M, Freschi, L, Vargas, R, Marin, MG, Phelan, J, Iqbal, Z, Dixit, A and Farhat, MR (2021). Additional file 1 of GenTB: A user-friendly genome-based predictor for tuberculosis resistance powered by machine learning. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.16544185.v1

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Ha, BTT, Ngoc Quang, L, Quoc Thanh, P, Duc, DM, Mirzoev, T and Bui, TMA (2021). Community engagement in the prevention and control of COVID-19: Insights from Vietnam. Qualitative transcripts. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0254432.s002

Hamid-Adiamoh, M, Nwakanma, D, Assogba, SB, Ndiath, MO, D'Alessandro, U, Afrane, YA and Amambua-Ngwa, A (2021). Overall data including separate worksheets for genotypic resistance and species genotypes; host blood meal and sporozoite positivity data. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0241023.s001

Harris, RC, Quaife, M, Weerasuriya, CK, Gomez, GB, Sumner, T, Bozzani, F and White, RG (2021). lshtm-tbmg/natcomms-m72sa: Nat Comms - code. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5793302

Herrett, E (2021). Codelists for: "Understanding thresholds of blood pressure and predicted cardiovascular disease risk in guiding blood pressure treatment: a cohort study in English primary care". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002271.

Hesselbarth, M, actions-user, Sciaini, M, Hereñú, D, Gruson, H and Etherington, T (2021). r-spatialecology/shar. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5761582

Holt, KE, Hawkey, J and Paranagama, K (2021). katholt/sonneityping: v20210201. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4609812

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Jaquiery, M and Schultze, A (2021). ReproducibiliTea LSHTM. [Data Collection]. OSF. https://osf.io/t27pc/

Jarvis, C (2021). jarvisc1/comix_uk_covid_restrictions. [Data Collection]. Github. https://github.com/jarvisc1/comix_uk_covid_restrictions

Jeffries, CL, Cansado-Utrilla, C, Beavogui, AH, Stica, C, Lama, EK, Kristan, M, Irish, SR and Walker, T (2021). Table S2. from Evidence for natural hybridization and novel Wolbachia strain superinfections in the Anopheles gambiae complex from Guinea. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14316674.v1

Johnson, C, Kumwenda, M, Meghji, J, Choko, AT, Phiri, M, Hatzold, K, Baggaley, R, Taegtmeyer, M, Terris-Prestholt, F, Desmond, N and Corbett, EL (2021). Additional file 1 of ‘Too old to test?’: A life course approach to HIV-related risk and self-testing among midlife-older adults in Malawi. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14369899.v1

Joy, E, Sturgess, J and Allen, E (2021). AHHA Malawi Trial Dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001993.

Jung, S, Endo, A, Kinoshita, R and Nishiura, H (2021). SungmokJung/Projection_Japan_COVID19 v1.0.0. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4576936

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Kabia, Evelyn, Goodman, C, Balabanova, D, Molyneux, S and Barasa, E (2021). The hidden financial burden of healthcare: a systematic literature review of informal payments in Sub-Saharan Africa. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/NMQCSF

Kalyesubula, R, Pardo, JM, Yeh, S, Munana, R, Weswa, I, Adducci, J, Nassali, F, Tefferi, M, Mundaka, J and Burrowes, S (2021). Additional file 1 of Youths’ perceptions of community health workers’ delivery of family planning services: a cross-sectional, mixed-methods study in Nakaseke District, Uganda. [Data Collection]. Zenodo. https://doi.org/10.6084/m9.figshare.14385027.v1

Kamau, A, Paton, RS, Akech, S, Mpimbaza, A, Khazenzi, C, Ogero, M, Mumo, E, Alegana, VA, Agweyu, A, Mturi, N, Mohammed, S, Bigogo, G, Audi, A, Kapisi, J, Sserwanga, A, Namuganga, JF, Kariuki, S, Otieno, NA, Nyawanda, BO, Olotu, A, Salim, N, Athuman, T, Abdulla, S, Mohamed, AF, Mtove, G, Reyburn, H, Gupta, S, Lourenço, J, Bejon, P and Snow, RW (2021). Replication Data for: Malaria hospitalisation in East Africa: age, phenotype and transmission intensity. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/CFYACQ

Kansiime, S (2021). Blood pressure levels among children in rural Uganda: results from 1,913 children in a general population survey. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002387.

Kayiga, H, Genevive, DA, Amuge, PM, Ssemata, AS, Nanzira, RS and Nakimuli, A (2021). Lived experiences of frontline healthcare providers offering maternal and newborn services amidst the novel corona virus disease 19 pandemic in Uganda: A qualitative study. S1 Dataset. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0259835.s001

Kazibwe, J, Tran, PB and Annerstedt, KS (2021). Additional file 1 of The household financial burden of non-communicable diseases in low- and middle-income countries: a systematic review. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14820890.v1

Keating, P, Murray, J, Schenkel, K, Merson, L and Seale, A (2021). Support files for: "Electronic data collection, management and analysis tools used for outbreak response in low- and middle-income countries: a systematic review and stakeholder survey". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002527.

Kelly-Hope, LA, Sanders, AM, Harding-Esch, E, Willems, J, Ahmed, F, Vincer, F and Hill, R (2021). Additional file 2 of Complex emergencies and the control and elimination of neglected tropical diseases in Africa: developing a practical approach for implementing safe and effective mapping and intervention strategies. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14355436.v1

Kelly-Hope, LA, Sanders, AM, Harding-Esch, E, Willems, J, Ahmed, F, Vincer, F and Hill, R (2021). Additional file 3 of Complex emergencies and the control and elimination of neglected tropical diseases in Africa: developing a practical approach for implementing safe and effective mapping and intervention strategies. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14355439.v1

Kessler, NJ (2021). knowah/bssnper2. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4647012

Kitonsa, J, Kamacooko, O, Bahemuka, UM, Kibengo, F, Kakande, A, Wajja, A, Basajja, V, Lumala, A, Ssemwanga, E, Asaba, R, Mugisha, J, Pierce, BF, Shattock, R, Kaleebu, P and Ruzagira, E (2021). Survey data on willingness to participate in COVID-19 vaccine trials among healthcare workers in three Ugandan hospitals. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002168.

Koltai, M (2021). Source data for "Date of introduction and epidemiologic patterns of SARS-CoV-2 in Mogadishu, Somalia: estimates from transmission modelling of satellite-based excess mortality data in 2020". [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5534768

Koltai, M (2021). mbkoltai/covid_lmic_model: Model fitting excess mortality data in Mogadishu v1.0. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5534762

Krauer, F and Schmid, BV (2021). Datasets and code for "Mapping the plague through natural language processing". [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4724015

Ku, C, MacPherson, P, Khundi, M, Nzawa Soko, RH, Feasey, HRA, Nliwasa, M, Horton, KC, Corbett, EL and Dodd, PJ (2021). Durations of asymptomatic, symptomatic, and care-seeking phases of tuberculosis disease with a Bayesian analysis of prevalence survey and notification data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002633.

Kucharski, AJ (2021). adamkucharski/covid-import-model. [Data Collection]. Github. https://github.com/adamkucharski/covid-import-model

Kuper, H (2021). Social and Economic Impact of Congenital Zika Syndrome questionnaire. [Data Collection]. OSF. https://doi.org/10.17605/OSF.IO/XJEP7

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LSHTM Electronic Health Research team (2021). Clinical codelist - Venous thromboembolism. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002395.

Laban, N (2021). Comparable exposure to SARS-CoV-2 in young children and healthcare workers in Zambia. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14237285.v2

Landau, W, Landau, W, Bond-Lamberty, B, Strasiotto, M, McBain, M, Müller, K, Mahr, T, Hughes, E, Ross, N, Bell, K, Ingerson, S, Aden-Buie, G, Gomolka, M, Knoblauch, N, Albers, S, brendanf, evalparse, Denney, B, Muir, C, Barrett, M, Krug, RM, Kehayas, V, Schratz, P, Zhao, B, Hlynur, Gruson, H, Jasper, Ooms, J, Walthert, L and Dray, M (2021). ropensci/drake. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.1160696

Lay, C, Chu, CW, Purbojati, RW, Acerbi, E, Drautz-Moses, DI, de Sessions, PF, Jie, S, Ho, E, Kok, YJ, Bi, X, Chen, S, Mak, SY, Chua, MC, Goh, AEN, Chiang, WC, Rao, R, Chaithongwongwatthana, S, Khemapech, N, Chongsrisawat, V, Martin, R, Koh, Y, Lohar, SR, Tan, ICH, Anng, WA, Jie, C, Bartke, N, Ben-Amor, K, Renes, IB, Wong, F, Roeselers, G, Ho, YS, Hibberd, ML, Schuster, SC and Knol, J (2021). Data for: "A synbiotic intervention modulates meta-omics signatures of gut redox potential and acidity in elective caesarean born infants". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Leclerc, QJ (2021). qleclerc/COVID_bed_occupancy. [Data Collection]. Github. https://github.com/qleclerc/COVID_bed_occupancy

Lee, SA (2021). Data and R code to accompany 'Spatial connectivity in mosquito-borne disease models: a systematic review of methods and assumptions'. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4706865

Lee, SA, Economou, T, de Castro Catão, R, Barcellos, C and Lowe, R (2021). Data and R code to accompany 'The impact of climate suitability, urbanisation, and connectivity on the expansion of dengue in 21st century Brazil' (version 1.0.0). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5710715

Leon, N, Namadingo, H, Bobrow, K, Cooper, S, Crampin, AC, Pauly, B, Levitt, N and Farmer, A (2021). StAR2D Patient Interview and Focus Group Guide: Formative Intervention development study. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002280.

Levecke, B, Coffeng, LE, Hanna, C, Pullan, RL and Gass, KM (2021). The data used to determine the required diagnostic performance, the sample size and the corresponding decision cut-offs. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0009740.s004

Liao, J, Kirby, MA, Pillarisetti, A, Piedrahita, R, Balakrishnan, K, Sambandam, S, Mukhopadhyay, K, Ye, W, Rosa, G, Majorin, F, Dusabimana, E, Ndagijimana, F, McCracken, JP, Mollinedo, E, de Leon, O, Díaz-Artiga, A, Thompson, LM, Kearns, KA, Naeher, L, Rosenthal, J, Clark, ML, Steenland, K, Waller, LA, Checkley, W, Peel, JL and Clasen, T (2021). Replication Data for: LPG stove and fuel intervention among pregnant women reduce fine particle air pollution exposures in three countries: Pilot results from the HAPIN trial. [Data Collection]. Harvard Dataverse. https://doi.org/10.15139/S3/XSGXUM

Limbada, M, Ayles, H and Macleod, D (2021). A Comparison of Different Community Models of ART Delivery Amongst Stable HIV+ Patients in two Urban Settings in Zambia - Study Protocol. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002116.

Lindsay, S, Carrasco-Tenezaca, M, Jawara, M, Bradley, J, D'Alessandro, U, Jeffries, D, Pinder, M and Knudsen, J (2021). Supplementary data files & video for Carrasco-Tenezaca published in the Journal of the Royal Society Interface, 'The relationship between house height and mosquito house entry: an experimental study in rural Gambia. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14483475.v1

Lindsey, BB, Villabona-Arenas, CJ, Atkins, KE and Campbell, F (2021). Chjulian/sheffield_HT: Characterising within-hospital SARS-CoV-2 transmission events. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5769865

Liu, Y, Sandmann, FG, Barnard, RC, Pearson, CA, CMMID Working-19 Working Group, Pastore, R, Pebody, R, Flasche, S and Jit, M (2021). Optimising health and economic impacts of COVID-19 vaccine rollout strategies in the WHO European Region. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4964148

Liu, Y, Sandmann, F, Barnard, RC, Pearson, CAB, LSHTM CMMID COVID-19 Working Group, Davies, NG and Jit, M (2021). Country Level COVID-19 Vaccination Prioritisation Decision Support Tool for WHO EUR. [Data Collection]. ShinyApps.io. https://cmmid-lshtm.shinyapps.io/demo/

London School of Hygiene & Tropical Medicine (2021). Atypical Salmonella: Invasive atypical non-typhoidal Salmonella serovars in The Gambia. [Data Collection]. National Center for Biotechnology Information. https://www.ncbi.nlm.nih.gov/bioproject/715881

London School of Hygiene & Tropical Medicine (2021). Sequencing of M/XDR isoaltes from Pakistan. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/browser/view/PRJEB43284

Lovell-Read, FA, Funk, S, Obolski, U, Donnelly, CA and Thompson, RN (2021). Supplementary material from "Interventions targeting non-symptomatic cases can be important to prevent local outbreaks: SARS-CoV-2 as a case study". [Data Collection]. The Royal Society. https://doi.org/10.6084/m9.figshare.c.5416023.v1

Lowe, K, Mansfield, KE, Demenestri, A and Smeeth, L (2021). Clinical codelist - CPRD Gold - harmful alcohol use. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002694.

Lowe, R (2021). Data and R code to accompany 'Combined effects of hydrometeorological hazards and urbanisation on dengue risk in Brazil: a spatiotemporal modelling study'. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4632204

Lubyayi, L and Webb, E (2021). EMaBS 1 to 5 years illness data and ARD outcomes at 9 years. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002438.

Luque-Fernandez, MA (2021). migariane/Spanish_LifeTablesByDeprivation: Spanish Abridged Life Tables by Deprivation. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4662659

Lynham, S and Dawson, L (2021). C. difficle p-cresol production. [Data Collection]. ProteomeXchange. http://proteomecentral.proteomexchange.org/PXD028948

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Mactaggart, I (2021). Gambia National Eye Health Survey 2019 Study Documents. [Data Collection]. OSF. https://doi.org/10.17605/OSF.IO/EKCDT

Malla, L, Langat, R and Akech, S (2021). CIN paediatric admissions. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/C0CDP9

Mansfield, KE (2021). Clinical codelist - CPRD Gold - hypertension. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002697.

Mansfield, KE (2021). Clinical codelist - CPRD Gold - ischaemic heart disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002701.

Marchant, T (2021). Maternal and newborn health project in Gombe state, northeast Nigeria. Data from clinical observations, exit interviews, follow up surveys between 2016 and 2019. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001709.

Marchant, T (2021). Maternal and newborn health project in Gombe state, northeast Nigeria. Data from household, health facility and birth attendant surveys between 2015 and 2019. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001712.

Masselot, P (2021). PierreMasselot/Frontier-FrenchScientificYoutube. [Data Collection]. Github. https://github.com/PierreMasselot/Frontier-FrenchScientificYoutube

Mathur, R (2021). Risk factor codelist - Ethnicity. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002414.

Mayerová, D and Abbas, KM (2021). d-mayerova/Vaccine_confidence_Albania. [Data Collection]. Github. https://github.com/d-mayerova/Vaccine_confidence_Albania

Mbaruku, G (2021). Testing the recording of priority facility-based, maternal and newborn coverage indicators for use in health management information systems. [Data Collection]. Ifakara Health Institute data repository. https://doi.org/10.17890/ihi.2017.09.99

McCarthy, M, O'Keeffe, L, Williamson, P, Sydes, M, Farrin, A, Lugg-Widger, F, Davies, G, Avery, K, Chan, A, Kwakkenbos, L, Thombs, B, Watkins, A, Hemkens, LG, Gale, C, Zwarenstein, M, Langan, S, Thabane, L, Juszczak, E, Moher, D and Kearney, P (2021). The development of a SPIRIT extension for trials conducted using cohorts and routinely collected data (SPIRIT-ROUTINE). [Data Collection]. OSF. https://doi.org/10.17605/OSF.IO/VQRUW

McCreesh, N (2021). NickyMcC/WithinClinics. [Data Collection]. Github. https://github.com/NickyMcC/WithinClinics

Mccreesh, N (2021). NickyMcC/CasualAgeMixing. [Data Collection]. Github. https://github.com/NickyMcC/CasualAgeMixing

Mccreesh, N, Dlamini, V, Edwards, A, Olivier, S, Dayi, N, Dikgale, K, Nxumalo, S, Dreyer, J, Baisley, K, Siedner, MJ, White, RG, Herbst, K, Grant, AD and Harling, G (2021). Social contact information from PIPSA residents in uMkhanyakude before and during the Covid-19 pandemic – data from the Umoya Omuhle and Covid Social Contacts studies. [Data Collection]. AHRI Data Repository. https://doi.org/10.23664/AHRI.UOANDCSC.DATASET.2021

Mee, P, Alexander, N and Colón-González, FJ (2021). Paul-Mee/clic_brazil. [Data Collection]. Github. https://github.com/Paul-Mee/clic_brazil

Mendelsohn, SC, Fiore-Gartland, A, Penn-Nicholson, A, Mulenga, H, Kimbung, S, Borate, B, Hadley, K, Hikuam, C, Musvosvi, M, Bilek, N, Erasmus, M, Jaxa, L, Raphela, R, Nombida, O, Kaskar, M, Sumner, T, White, RG, Innes, C, Brumskine, W, Hiemstra, A, Malherbe, ST, Hassan-Moosa, R, Tameris, M, Walzl, G, Naidoo, K, Churchyard, G, Scriba, TJ and Hatherill, M (2021). Validation of Correlates of Risk of TB Disease in High Risk Populations (CORTIS-HR) Study: Public, subject-level RISK11 signature scores and metadata. [Data Collection]. University of Cape Town. https://doi.org/10.25375/uct.14176484.v1

Milligan, P (2021). Effectiveness of seasonal malaria chemoprevention at scale in west and central Africa: an observational study. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002136.

Millington, J, Okpako, O and Herrick, C (2021). Analysis of non-communicable disease reports contributing to UN high-level meeting process (2000-2020). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5236552

Moodley, B, Chinorumba, A, Hamman, C, Matamba, A, Sikaala, CH, Kleinschmidt, I and Frean, J (2021). Additional file 5 of Improving the quality of malaria diagnosis in southern Africa through the development of a regional malaria slide bank. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.16590714.v1

Mosha, MV, Msuya, SE, Kasagama, E, Ayieko, P, Todd, J and Filteau, S (2021). Childhood obesity. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0249595.s001

Moyano, LM, Montano, SM, Vilchez Barreto, P, Reto, N, Larrauri, L, Mori, N, Cornejo-Olivas, M, Guevara-Silva, E, Urizar, F, Najar, E, Gamboa, R, Azabache, C, Herrer Ticse, R, Bolivar-Herrada, L, Doud, A, Martinez, P, Miranda, JJ, Zunt, JR and García, HH (2021). Prevalence of stroke survival in rural communities living in northern Peru. S1 Data. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0254440.s001

Mtenga, B, Beard, J, Todd, J and Urassa, M (2021). Kisesa Tanzania - HIV missing data analysis. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002083.

Mueller, W, Wilkinson, P, Milner, J, Vardoulakis, S, Steinle, S, Pärkkä, J, Parmes, E, Cluitmans, L, Kuijpers, E, Pronk, A, Sarigiannis, D, Karakitsios, S, Chapizanis, D, Maggos, T, Stamatelopoulou, A and Loh, M (2021). Additional file 1 of Neighbourhood and path-based greenspace in three European countries: associations with objective physical activity. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.13719460.v1

Munday, JD (2021). jdmunday/SchoolHouseholdNetworksCOVID: Initial release. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4552421

Munday, JD and Jarvis, CI (2021). jdmunday/CoMix_schools_reopening. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5172069

Munday, JD, Jarvis, CI, Gimma, A, Wong, KL, van Zandvoort, K, Funk, S and Edmunds, WJ (2021). CoMix - Age structured contact matrices for 9 key periods of the COVID-19 epidemic in England. [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.4677018

Murphy, N, Cardinal, MV, Bhattacharyya, T, Enriquez, GF, Macchiaverna, NP, Alvedro, A, Freilij, H, Martinez de Salazar, P, Molina, I, Mertens, P, Gilleman, Q, Gürtler, RE and Miles, MA (2021). Additional file 5 of Assessing antibody decline after chemotherapy of early chronic Chagas disease patients. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.16841066.v1

Muthui, MK, Takashima, E, Omondi, BR, Kinya, C, Muasya, WI, Nagaoka, H, Mwai, K, Orindi, B, Wambua, J, Bousema, T, Drakeley, C, Blagborough, AM, Marsh, K, Bejon, P and Kapulu, MC (2021). Replication data for: Characterization of naturally acquired immunity to a panel of antigens expressed in mature P. falciparum gametocytes. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/WL8TRW

Muzambi, R (2021). Clinical codelist - Anxiety and depression ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002577.

Muzambi, R (2021). Clinical codelist - Anxiety and depression Read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002576.

Muzambi, R (2021). Clinical codelist - Asthma Read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002578.

Muzambi, R (2021). Clinical codelist - Chronic Kidney Disease ICD-10. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002581.

Muzambi, R (2021). Clinical codelist - Chronic Kidney Disease Read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002580.

Muzambi, R (2021). Clinical codelist - Chronic Liver Disease ICD-10. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002583.

Muzambi, R (2021). Clinical codelist - Chronic Liver Disease Read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002582.

Muzambi, R (2021). Clinical codelist - Chronic Obstructive Pulmonary Disease ICD-10. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002587.

Muzambi, R (2021). Clinical codelist - Chronic Obstructive Pulmonary Disease Read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002586.

Muzambi, R (2021). Clinical codelist - Cognitive impairment exclusion ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002585.

Muzambi, R (2021). Clinical codelist - Cognitive impairment exclusion Read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002584.

Muzambi, R (2021). Clinical codelist - Dementia exclusion ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002589.

Muzambi, R (2021). Clinical codelist - Dementia exclusion Read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002588.

Muzambi, R (2021). Clinical codelist - Diabetes ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002591.

Muzambi, R (2021). Clinical codelist - Diabetes Read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002590.

Muzambi, R (2021). Clinical codelist - Heart failure ICD-10. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002593.

Muzambi, R (2021). Clinical codelist - Heart failure Read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002592.

Muzambi, R (2021). Clinical codelist - Hypertension ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002595.

Muzambi, R (2021). Clinical codelist - Hypertension Read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002594.

Muzambi, R (2021). Clinical codelist - Inflammatory Bowel Disease ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002597.

Muzambi, R (2021). Clinical codelist - Inflammatory Bowel Disease Read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002596.

Muzambi, R (2021). Clinical codelist - Lower respiratory tract infections ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002599.

Muzambi, R (2021). Clinical codelist - Lower respiratory tract infections Read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002598.

Muzambi, R (2021). Clinical codelist - Multiple Sclerosis ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002601.

Muzambi, R (2021). Clinical codelist - Multiple Sclerosis Read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002600.

Muzambi, R (2021). Clinical codelist - Obstructive sleep opnoea ICD-10. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002603.

Muzambi, R (2021). Clinical codelist - Obstructive sleep opnoea Read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002602.

Muzambi, R (2021). Clinical codelist - Psoriasis ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002605.

Muzambi, R (2021). Clinical codelist - Psoriasis Read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002604.

Muzambi, R (2021). Clinical codelist - Rhematoid Arthritis ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002607.

Muzambi, R (2021). Clinical codelist - Rheumatoid Arthritis Read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002606.

Muzambi, R (2021). Clinical codelist - Sepsis ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002609.

Muzambi, R (2021). Clinical codelist - Sepsis Read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002608.

Muzambi, R (2021). Clinical codelist - Severe mental illness Read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002610.

Muzambi, R (2021). Clinical codelist - Skin and soft tissue infections ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002613.

Muzambi, R (2021). Clinical codelist - Skin and soft tissue infections Read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002612.

Muzambi, R (2021). Clinical codelist - Stroke ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002615.

Muzambi, R (2021). Clinical codelist - Stroke Read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002614.

Muzambi, R (2021). Clinical codelist - Traumatic brain injury ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002617.

Muzambi, R (2021). Clinical codelist - Traumatic brain injury Read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002616.

Muzambi, R (2021). Clinical codelist - Urinary tract infections ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002619.

Muzambi, R (2021). Clinical codelist - Urinary tract infections Read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002618.

Muzambi, R (2021). Clinical codelist - asthma ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002579.

Muzambi, R (2021). Codelists for: "Are common infections associated with cognitive decline and neuroimaging outcomes? A historical cohort study using data from the UK Biobank study linked to primary and secondary care electronic health records". [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002573.

Muzambi, R (2021). Therapy codelist - Antibiotics BNF/dm+d/read v2 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002574.

Muzambi, R (2021). Therapy codelist - Anxiety and depression BNF/dm+d/Read v2 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002575.

Muzambi, R (2021). Therapy codelist - Severe mental illness ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002611.

Muzambi, R, Bhaskaran, K, Brayne, C, Chaturvedi, N, Smeeth, L and Warren-Gash, C (2021). ISAC Protocol 19_129 - Common infections and incident dementia: a historical cohort study using UK primary and secondary care data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002134.

Muzambi, R, Bhaskaran, K, Smeeth, L and Warren-Gash, C (2021). Codelists for: "Common infections and incident dementia: a historical cohort study using UK primary and secondary care data". [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002073.

Muzambi, R and Warren-Gash, C (2021). Clinical codelist - CPRD Gold - traumatic brain injury. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002706.

N

Naiga, S, Nabirye, C, Kayendeke, M and Chandler, C (2021). Anti-Microbials in Society - Uganda Study, 2017-2021. [Data Collection]. UK Data Service, Colchester, Essex. https://dx.doi.org/10.5255/UKDA-SN-854612

Nampijja, M, Sembajjwe, W, Mpango, RS, Mpairwe, H, Kinyanda, E, Edward, J and Ayikoru, T (2021). CHAKA-SONA Normative dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002434.

NatCen Social Research, London School of Hygiene & Tropical Medicine, Russell, M and Senior, M (2021). National Survey of Sexual Attitudes and Lifestyles, 2010-2012: Biological Data: Secure Access. [Data Collection]. UK Data Service. http://doi.org/10.5255/UKDA-SN-8179-1

Niles, RA, Thickstun, CR, Cox, H, Dilliott, D, Burgert-Brucker, CR, Harding-Esch, EM, Clementson, N, Sampson, A, Alexandre, JS, Morice Trejos, AC, Scholte, RGC and Krentel, A (2021). Community Survey of Lymphatic Filariasis Mass Drug Administration Acceptability in Guyana, August 2019. [Data Collection]. UNC Dataverse. https://doi.org/10.15139/S3/VIOTDL

Nyaguthii, DM, Otieno, GP, Kombe, IK, Koech, D, Mutunga, M, Medley, GF, Nokes, DJ and Munywoki, PK (2021). Replication Data for: Infection patterns of endemic human coronaviruses in rural households in coastal Kenya. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/CPJ9B4

O

Okere, N, Meta, J, Maokola, W, Martelli, G, van Praag, E, Naniche, D, Gomez, G, Pozniak, A, Rinke de Wit, T, de Klerk, J and Hermans, S (2021). Quality of care in a differentiated HIV service delivery intervention in Tanzania: A mixed methods study. [Data Collection]. Dryad. http://doi.org/10.5061/dryad.bcc2fqzbj

Okpako, O, Herrick, C and Millington, J (2021). Database of non-communicable disease reports contributing to UN high-level meeting process (2000-2020). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5236439

Olaru, ID (2021). ARGUS study - clinical and bacteriological outcomes dataset. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.v41ns1rwb

Olaru, ID (2021). Knowledge, attitudes and practices relating to antibiotic use and resistance among prescribers from public primary healthcare facilities in Harare, Zimbabwe. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.66t1g1k1s

Olaru, I (2021). ARGUS clinical and bacteriological outcomes dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002110.

Oliphant, NP, Ray, N, Bensaid, K, Ouedraogo, A, Gali, AY, Habi, O, Maazou, I, Panciera, R, Muñiz, M, Manda, SO, Sy, Z, Jackson, D and Doherty, T (2021). Supplementary Appendix 1b of "Optimizing geographical accessibility to primary health care at community level in Niger: a geospatial analysis". [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4428176

Oliphant, NP, Ray, N, Bensaid, K, Ouedraogo, A, Gali, AY, Habi, O, Maazou, I, Panciera, R, Muñiz, M, Manda, SO, Sy, Z, Jackson, D and Doherty, T (2021). Supplementary Appendix 1c of "Toward a geography of community health workers in Niger: a geospatial analysis". [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.13536779.v5

Oliphant, NP, Ray, N, Bensaid, K, Ouedraogo, A, Gali, AY, Habi, O, Maazou, I, Panciera, R, Muñiz, M, Sy, Z, Manda, S, Jackson, D and Doherty, T (2021). Supplementary Appendix 1b of "Optimising geographical accessibility to primary health care: a geospatial analysis of community health posts and community health workers in Niger". [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4428176

Oliphant, NP, Ray, N, Bensaid, K, Ouedraogo, A, Gali, AY, Habi, O, Maazou, I, Panciera, R, Muñiz, M, Sy, Z, Manda, S, Jackson, D and Doherty, T (2021). Supplementary Appendix 1c of "Optimising geographical accessibility to primary health care: a geospatial analysis of community health posts and community health workers in Niger". [Data Collection]. Zenodo.

Oliveira, MD, Dimitrovová, K, Angelis, A, Kanavos, P and Bana e Costa, C (2021). Results of the Web-Delphi process to INAMI stakeholders (three rounds). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5257297

Oliveira, MD, Dimitrovová, K, Angelis, A, Kanavos, P and Bana e Costa, C (2021). Results of the Web-Delphi process to YLV stakeholders (three rounds). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5257424

Orindi, BO, Ziraba, A, Bruyneel, L, Floyd, S and Lesaffre, E (2021). Invariance of the WHO violence against women instrument among Kenyan adolescent girls and young women: Bayesian psychometric modeling. S1 Dataset. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0258651.s007

Ouansafi, I (2021). Friendship Bench problem-solving therapy and its impact on adherence to ART among young people – Interview transcripts. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002002.

Ouansafi, I, Chibanda, D, Munetsi, E and Simms, V (2021). Interview topic guide for: "Impact of Friendship Bench problem-solving therapy on adherence to ART in young people living with HIV in Zimbabwe". [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0250074.s001

O’Hara, G, Mokaya, J, Hau, J, Downs, L, Karabarinde, A, Asiki, G, McNaughton, A, Seeley, J, Matthews, P and Newton, R (2021). Liver function tests and fibrosis scores in a rural population in Africa. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.8292194.v3

P

Palmer, J, Sherratt, K, Martin-Nielsen, R, Bevan, J, Gibbs, H, CMMID COVID-19 Working Group, Funk, S and Abbott, S (2021). covidregionaldata: Subnational data for COVID-19 epidemiology. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3957539

Parker, E (2021). eparker12/RoVI: Analysis code and data for RoVI study primary outcomes. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5528336

Parker, E (2021). vac-lshtm/VaC_tracker. [Data Collection]. Github. https://github.com/vac-lshtm/VaC_tracker

Paton, RS, Kamau, A, Akech, S, Agweyu, A, Ogero, M, Mwandawiro, C, Mturi, N, Mohammed, S, Mpimbaza, A, Kariuki, S, Otieno, NA, Nyawanda, BO, Mohamed, AF, Mtove, G, Reyburn, H and Gupta, S (2021). Replication Data for: Malaria infection and severe disease risks in Africa. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/XGDB3K

Pavanello, F, De Cian, E, Davide, M, Mistry, M, Cruz, TB, Bezerra, PdS, Jagu, D, Renner, S, Schaffer, R and Lucena, AFP (2021). Data for: Air-Conditioning and the Adaptation Cooling Deficit in Emerging Economies, Pavanello et al 2021. [Data Collection]. Mendeley Data. https://doi.org/10.17632/ws7cmwbnfg.1

Pavelka, M, van Zandvoort, K, Abbott, S, Sherratt, K, Majdan, M, Jarcuska, P, Krajci, M, Flasche, S and Funk, S (2021). Data and R code accompanying the manuscript "The impact of population-wide rapid antigen testing on SARS-CoV-2 prevalence in Slovakia". [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4570938

Pearce, N (2021). PROTECT initiative extended Covid-19 occupational questionnaire. [Data Collection]. OSF. https://doi.org/10.17605/OSF.IO/HDC8S

Pearson, CAB, Bozzani, F, Procter, SR, Davies, NG, Huda, M, Jensen, HT, Keogh-Brown, M, Khalid, M, Sweeney, S, Torres-Rueda, S, Eggo, RM, Vassall, A and Jit, M (2021). Simulation results for "COVID-19 vaccination in Sindh Province, Pakistan: a modelling study of health impact and cost-effectiveness". [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.5070957

Pearson, CAB (2021). cmmid/covidTestVac. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4725814

Pearson, CAB, Russell, TW and Kucharski, AJ (2021). cmmid/SA2UK. [Data Collection]. Github. https://github.com/cmmid/SA2UK

Phillips, D, Gemechu, T, Parry, E, Yacoub, M and Kotit, S (2021). Community-based prevalence of Rheumatic Heart Disease in rural Ethiopia: five-year follow-up. [Data Collection]. University of Southampton, Southampton, United Kingdom. https://doi.org/10.5258/SOTON/D1987

Pisani, E, Hasnida, A, Rahmi, M, Harsono, S, Kok, M and Anggriani, Y (2021). Supplementary material for Pisani et al: Substandard and falsified medicines: proposed methods for case finding and sentinel surveillance. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/SELJ0Z

Pollington, TM, Tildesley, MJ, Hollingsworth, TD and Chapman, LAC (2021). t-pollington/developments_tau_statistic. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4906403

Powell-Jackson, T, Kovacs, R and Borghi, J (2021). Code for: "Socioeconomic inequalities in the quality of primary care under Brazil’s national pay-for-performance programme: a longitudinal study of family health teams". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002016.

Prem, K (2021). kieshaprem/nsum: Release of NSUM codes version 1.0. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4889457

Prem, K (2021). kieshaprem/synthetic-contact-matrices. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4889499

Prior, KF, Middleton, B, Owolabi, AT, Westwood, ML, Holland, J, O'Donnell, AJ, Blackman, MJ, Skene, DJ and Reece, SE (2021). Blood glucose concentration time series in mice infected with malaria parasites. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14912709.v2

Prior, KF, Middleton, B, Owolabi, AT, Westwood, ML, Holland, J, O'Donnell, AJ, Blackman, MJ, Skene, DJ and Reece, SE (2021). Plasmodium chabaudi genotype DK parasite stages during time series. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14842695.v1

Prior, KF, Middleton, B, Owolabi, AT, Westwood, ML, Holland, J, O'Donnell, AJ, Blackman, MJ, Skene, DJ and Reece, SE (2021). Plasmodium schizont densities in culture grown with and without isoleucine, as well as isoleucine starvation for different durations of time. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14842716.v1

Prior, KF, Middleton, B, Owolabi, AT, Westwood, ML, Holland, J, O'Donnell, AJ, Blackman, MJ, Skene, DJ and Reece, SE (2021). Plasmodium schizont proportion in culture grown with and without isoleucine. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14842713.v1

Prior, KF, Middleton, B, Owolabi, AT, Westwood, ML, Holland, J, O'Donnell, AJ, Blackman, MJ, Skene, DJ and Reece, SE (2021). Targeted metabolomics on malaria-infected mouse blood. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14842638.v1

Pung, R (2021). rachaelpung/covid_missed_infections. [Data Collection]. Github. https://github.com/rachaelpung/covid_missed_infections

Pung, R (2021). rachaelpung/serial_interval_covid_b.1.617.2. [Data Collection]. Github. https://github.com/rachaelpung/serial_interval_covid_b.1.617.2

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Quilty, B (2021). cmmid/covid_quar_test_import_risk. [Data Collection]. Github. https://github.com/cmmid/covid_quar_test_import_risk

Quilty, B (2021). cmmid/quar_test_contact_tracing. [Data Collection]. Github. https://github.com/cmmid/quar_test_contact_tracing

Quilty, BJ, Hellewell, J, Clifford, S and CMMID COVID-19 working group (2021). R code for: "Confirmatory testing with a second lateral flow test may mitigate false positives at low levels of SARS-CoV-2 prevalence in English schools". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002074.

Quinn, AK, Williams, KN, Thompson, LM, Harvey, SA, Piedrahita, R, Wang, J, Quinn, C, Pillarisetti, A, McCracken, JP, Rosenthal, JP, Kirby, MA, Diaz Artiga, A, Thangavel, G, Rosa, G, Miranda, JJ, Checkley, W, Peel, JL and Clasen, TF (2021). Replication Data for: Fidelity and Adherence to a Liquefied Petroleum Gas Stove and Fuel Intervention during Gestation: The Multi-Country Household Air Pollution Intervention Network (HAPIN) Randomized Controlled Trial. [Data Collection]. UNC Dataverse. https://doi.org/10.15139/S3/9DDEAW

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Raftery, P, Hossain, M and Palmer, J (2021). Additional file 1 of An innovative and integrated model for global outbreak response and research - a case study of the UK Public Health Rapid Support Team (UK-PHRST). [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14956014.v1

Randera-Rees, S, Safari, WC, Gareta, D, Herbst, K, Baisley, K and Grant, AD (2021). Clinic attendance by sex and HIV status in rural South Africa. [Data Collection]. Africa Health Research Institute (AHRI). https://doi.org/10.23664/AHRI.CLINIC.VISITS.CODE.2021

Rasoanaivo, TF, Bourner, J, Randriamparany, RN, Gamana, TM, Andrianaivoarimanana, V, Raherivelo, MH, Randriamampionona, H, Rajerison, M, Raberahona, M, Salam, AP, Edwards, T, Olliaro, PL and Randremanana, RV (2021). Data for: "The impact of COVID-19 on clinical research for Neglected Tropical Diseases (NTDs): A case study of bubonic plague". [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0010064.s001

Rees, E (2021). erees/seasonalHCoV. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4618261

Roberts, C, Brindle, H, Rogers, N, Eggo, RM, Enria, L and Lees, S (2021). Data for: "Vaccine Confidence and Hesitancy at the start of COVID-19 vaccine deployment in the UK: An embedded mixed-methods study". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002337.

Roberts, C, Rogers, N, Waterlow, N, Brindle, H, Enria, L and Lees, S (2021). Behavioural change towards reduced intensity physical activity is disproportionately prevalent among adults with serious health issues or self-perception of high risk during the UK COVID-19 lockdown. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002091.

Roberts, C and Stott, C (2021). LSHTM-ORK/ODK_Biometrics. [Data Collection]. Github. https://github.com/LSHTM-ORK/ODK_Biometrics

Robinson, A, Reis de Oliveira Gomes, L, Abdurahman, OS, Alemayehu, W, Shuka, G, Melese, E, Guye, M, Legesse, D, Elias, E, Temam, K, Korso, HK, Muluadam, AA, Virginia, S, Lambert, S, Walker, SL, Habtamu, E, Solomon, AS, Last, AR, Macleod, D, Burton, MJ and Logan, JG (2021). Primary and secondary measurements collected when trialling use of insecticide-treated scarves to protect against Musca sorbens. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002423.

Ross, I (2021). Data for: "Sanitation-related Quality of Life (SanQoL) in Maputo, Mozambique". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002442.

Rubio, FJ, Alvares, D, Redondo-Sanchez, D and Luque-fernandez, MA (2021). migariane/BayesVarImpComorbiCancer. [Data Collection]. Github. https://github.com/migariane/BayesVarImpComorbiCancer

Rujumba, J, Homsy, J, Bannink, F, Namukwaya, Z, Amone, A, Rukundo, G, Katabira, E, Byamugisha, J, Fowler, MG and King, RL (2021). Interview excerpts by major themes and sub-themes perceptions of HIV self-testing in Kampala. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0253616.s003

Rukundo, GZ, Levin, J, Mpango, RS, Patel, V and Kinyanda, E (2021). Effect of suicidality on clinical and behavioural outcomes in HIV positive adults in Uganda. S1 Data. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0254830.s002

Russell, M, NatCen Social Research, London School of Hygiene & Tropical Medicine and Senior, M (2021). National Survey of Sexual Attitudes and Lifestyles, 2010-2012: Secure Access. [Data Collection]. UK Data Service, Colchester, Essex, United Kingdom. http://doi.org/10.5255/UKDA-SN-8178-1

S

Safari, W and Baisley, K (2021). Clinic attendance by sex and HIV status in rural South Africa - Data and Code. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Samuels, THA, Shete, PB, Ojok, C, Nalugwa, T, Farr, K, Turyahabwe, S, Katamba, A, Cattamanchi, A and Moore, DAJ (2021). Where will it end? Pathways to care and catastrophic costs following negative TB evaluation in Uganda. Raw data for analysis. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0253927.s005

Sanya, R and Webb, E (2021). Data supporting "Profiles of inflammation in rural and urban Uganda". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002459.

Schmidt, W (2021). Data for: "High initial IgG antibody levels against Orientia tsutsugamushi are associated with an increased risk of severe scrub typhus infection". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001998.

Schultze, A, Hulme, W, Davy, S, Mackenna, B, Nightingale, E and Inglesby, P (2021). opensafely/carehomes-short-data-report. [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.4675682

Scriba, TJ, Fiore-Gartland, A, Penn-Nicholson, A, Mulenga, H, Kimbung Mbandi, S, Borate, B, Mendelsohn, SC, Hadley, K, Hikuam, C, Kaskar, M, Musvosvi, M, Bilek, N, Self, S, Sumner, T, White, RG, Erasmus, M, Jaxa, L, Raphela, R, Innes, C, Brumskine, W, Hiemstra, A, Malherbe, ST, Hassan-Moosa, R, Tameris, M, Walzl, G, Naidoo, K, Churchyard, G and Hatherill, M (2021). RISK11 signature scores for the biomarker-guided tuberculosis preventive therapy (CORTIS) randomised controlled trial. [Data Collection]. University of Cape Town. https://doi.org/10.25375/uct.13573337.v1

Scriba, TJ, Fiore-Gartland, A, Penn-Nicholson, A, Mulenga, H, Kimbung Mbandi, S, Borate, B, Mendelsohn, SC, Hadley, K, Hikuam, C, Kaskar, M, Musvosvi, M, Bilek, N, Self, S, Sumner, T, White, RG, Erasmus, M, Jaxa, L, Raphela, R, Innes, C, Brumskine, W, Hiemstra, A, Malherbe, ST, Hassan-Moosa, R, Tameris, M, Walzl, G, Naidoo, K, Churchyard, G and Hatherill, M (2021). RISK11 signature scores for the biomarker-guided tuberculosis preventive therapy (CORTIS) randomised controlled trial. [Data Collection]. University of Cape Town. https://doi.org/10.25375/uct.13573337.v1

Seeley, J (2021). Lending a hand: developing a support structure for young migrants in South Africa and Uganda. [Data Collection]. AHRI Data Repository. https://doi.org/10.23664/AHRI.LENDINGAHAND.ANALYTICALDATA.2021.V1

Sera, F, Abbott, S and Roye, D (2021). fsera/COVIDWeather. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.5281/zenodo.5215841

Serpa Pimentel, Ad, Mshana, G, Aloyce, D, Peter, E, Mchome, Z, Malibwa, D, Dwarumpudi, A, Kapiga, S and Stöckl, H (2021). Supplemental material for Women’s understanding of economic abuse in North-Western Tanzania. [Data Collection]. SAGE Journals. https://doi.org/10.25384/SAGE.16590165.v1

Shaikh, N, McCreesh, N and Deol, A (2021). Data for: "Importance of ventilation and occupancy to Mycobacterium tuberculosis transmission rates in congregate settings". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002427.

Shakur-Still, H, Arribas, M, Roberts, I, Chaudhri, R, Geer, A, Prowse, D, Lubeya, MK, Kayani, A, Javaid, K and Grassin Delyle, S (2021). WOMAN-PharmacoTXA Trial: Pharmacokinetics and pharmacodynamics of tranexamic acid in women having caesarean section birth - Extended data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002164.

Shaver, J, Shenk, MK, Sear, R, Sosis, R, Spake, L, Schaffnit, S, Lynch, R and Hassan, A (2021). The Evolutionary Dynamics of Religion, Family Size, and Child Success. [Data Collection]. OSF. https://osf.io/b865v

Shiekh, S, Cadogan, S and Warren-Gash, C (2021). Clinical codelist - CPRD Gold - herpes simplex. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002696.

Shulman, CE, Dorman, EK, Cutts, F, Kawuondo, K, Bulmer, JN, Peshu, N and Marsh, K (2021). Replication Data for: Malaria in pregnancy: adverse effects on haemoglobin levels and birthweight in primigravidae and multigravidae. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/HP1JYJ

Simms, V (2021). Effectiveness of a peer-led adolescent mental health intervention on HIV virological suppression and mental health in Zimbabwe: data collection documents. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002312.

Simms, V and Chinoda, S (2021). Effectiveness of a peer-led adolescent mental health intervention on HIV virological suppression and mental health in Zimbabwe: Baseline and Endline questionnaires. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002142.

Simms, V (2021). Friendship Bench trial: lay worker training in problem-solving therapy to reduce symptoms of common mental disorders. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001515.

Simons, D (2021). DidDrog11/smoking_covid_bayes. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4002046

Simons, D, Shahab, L, Brown, J and Perski, O (2021). The association of smoking status with SARS-CoV-2 infection, hospitalisation and mortality from COVID-19: A living rapid evidence review and Bayesian meta-analyses (version 11) - Data. [Data Collection]. Zenodo. https://doi.org/10.6084/m9.figshare.12756020.v6

Simpson, H, Tabah, EN, Phillips, RO, Frimpong, M, Maman, I, Ampadu, E, Timothy, J, Saunderson, P, Pullan, RL and Cano, J (2021). Total area predicted suitable and population living in suitable areas for Buruli ulcer, M. ulcerans, and both, by country in African continent. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0009157.s019

Smeeth, L, Perkins, A and Williamson, E (2021). StatinWISE study data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001695.

Smith, KG, Scheelbeek, P, Balmford, A and Garnett, EE (2021). Research data supporting "Discrepancies between two long-term dietary datasets in the United Kingdom (UK)". [Data Collection]. University of Cambridge, Cambridge, United Kingdom. https://doi.org/10.17863/CAM.78207

Smythe, T, Reichenberger, V, Pinzón, EM, Hurtado, IC, Rubiano, L and Kuper, H (2021). Data collection tools for a study on establishing the feasibility of parent support groups for children with Congenital Zika Syndrome and their families in Colombia. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002245.

Snetselaar, J, Rowland, M, Manunda, B, Kisengwa, E, Small, G, Malone, D, Mosha, F and Kirby, M (2021). Experimental data of two IRS hut trials with broflanilide 50WP conducted in Moshi, Tanzania. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001948.

Soremekun, O, Soremekun, C, Machipisa, T, Soliman, M, Nashiru, O, Chikowore, T and Fatumo, S (2021). Genome-Wide Association and Mendelian Randomization Analysis Reveal the Causal Relationship Between White Blood Cell Subtypes and Asthma in Africans. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.3389/fgene.2021.749415.s001

Spadar, A, Phelan, J, Diez-Benavente, E, Campos, M, Gomez, LF, Mohareb, F, Clark, TG and Campino, S (2021). Data for: "Flavivirus integrations in Aedes aegypti are limited and highly conserved across samples from different geographic regions unlike integrations in Aedes albopictus". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002482.

Spake, L, Schaffnit, S, Sear, R, Shenk, MK, Sosis, R and Shaver, J (2021). Mother's partnership status and allomothering networks in the United Kingdom and United States. [Data Collection]. Open Science Framework. https://osf.io/zpu5f/

Sringernyuang, L, Whanpuch, P, Poompruek, P and Chandler, C (2021). Anti-microbials In Society - Thailand, Study 1, 2017-2021. [Data Collection]. UK Data Service, Colchester, Essex, United Kingdom. https://doi.org/10.5255/UKDA-SN-855071

Ssali, A, Pickering, L, Nalwadda, E, Mujumbusi, L, Seeley, J and Lamberton, PHL (2021). Raw data on messaging, extracted and anonymised after coding. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0009893.s003

Stoner, MCD, Kilburn, K, Godfrey-faussett, P, Ghys, P and Pettifor, AE (2021). Supporting files for "Cash transfers for HIV prevention: A systematic review". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Strongman, H (2021). Therapy codelist - CPRD GOLD - antihypertensives. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002188.

Strongman, H and Carreira, H (2021). STATA Do files for "Factors associated with excess mortality in the first wave of COVID-19 pandemic in the UK: a cohort analysis using the Clinical Practice Research Databank". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002560.

Strongman, H, Forbes, H and Bhate, K (2021). Clinical codelist - Psoriasis. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002400.

Strongman, H, Mansfield, K and LSHTM Electronic Health Records team (2021). Clinical codelist - Rheumatoid Arthritis. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002399.

Stubbs, T, Kentikelenis, A, Stuckler, D, Mckee, M and King, L (2021). Replication Data for: "The impact of IMF conditionality on government health expenditure: A cross-national analysis of 16 West African nations". [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/BCMAV5

Sturgess, J and Dodd, M (2021). Tight K Pilot Study Dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002415.

Sturt, A (2021). Data for: "Association between Female Genital Schistosomiasis and HIV-1 incidence: a retrospective cohort study". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001927.

Sturt, A, Bustinduy, A and Webb, E (2021). Data for: "Cervicovaginal Immune Activation in Zambian Women with Female Genital Schistosomiasis". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001926.

Sturt, A, Rafferty, H and Bustinduy, A (2021). Data for: "Association between cervical dysplasia and female genital schistosomiasis diagnosed by genital PCR in Zambian women". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002282.

Sturt, A, Webb, E and Bustinduy, A (2021). Data for: "Association of Female Genital Schistosomiasis with the Cervicovaginal Microbiota and Sexually Transmitted Infections in Zambian Women". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002340.

Sumner, T (2021). tomsumner/CORTIS_HR_CE. [Data Collection]. Github. https://github.com/tomsumner/CORTIS_HR_CE

Sweeney, S, Cunnama, L, Laurence, Y, Garcia Baena, I, Kairu, A, Minyewelet, M, Eyob, H, Chatterjee, S, Toshniwal, M, Chikovani, I, Shingelia, N, Capeding, TJ and Vassall, A (2021). Value TB Dataset: costs per direct & ancillary service. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/UGYNGT

Sweeney, S, Cunnama, L, Laurence, Y, Garcia Baena, I, Kairu, A, Minyewelet, M, Eyob, H, Chatterjee, S, Toshniwal, M, Chikovani, I, Shingelia, N, Capeding,, TJ and Vassall, A (2021). Value TB Dataset: costs per intervention. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/QOI6IR

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Tackney, MS, Cook, DG, Stahl, D, Ismail, K, Williamson, E and Carpenter, J (2021). Additional file 1 of A framework for handling missing accelerometer outcome data in trials. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14738652.v1

Tadesse, FG, Ashine, T, Teka, H, Esayas, E, Messenger, LA, Chali, W, Meerstein-Kessel, L, Walker, T, Wolde Behaksra, S, Lanke, K, Heutink, R, Jeffries, CL, Mekonnen, DA, Hailemeskel, E, Tebeje, SK, Tafesse, T, Gashaw, A, Tsegaye, T, Emiru, T, Kigozi, S, Bogale, EA, Yohannes, G, Kedir, S, Shumie, G, Sabir, SA, Mumba, P, Dengela, D, Kolaczinski, JH, Wilson, A, Churcher, TS, Chibsa, S, Murphy, M, Balkew, M, Irish, S, Drakeley, C, Gadisa, E and Bousema, T (2021). Anopheles stephensi mosquitoes as vectors of Plasmodium vivax and falciparum, Horn of Africa, 2019. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.gf1vhhmnt

Tanton, C, McDonagh, L, Cabecinha, M, Clifton, S, Geary, R, Rait, G, Saunders, J, Cassell, J, Bonell, C, Mitchell, KR and Mercer, CH (2021). Data for: "How does the sexual, physical and mental health of young adults not in education, employment or training (NEET) compare to workers and students?". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002155.

Tazare, J (2021). johntaz/HDPS-Diagnostics. [Data Collection]. Github. https://github.com/johntaz/HDPS-Diagnostics/tree/master/code

Teixeira, MG, Skalinski, LM, Paixao Cruz, ES, Costa, Maria da Conceição N., Barreto, FR, Campos, GS, Sardi, SI, Carvalho, RH, Natividade, M, Itaparica, M, Dias, JP, Trindade, SC, Teixeira, BP, Morato, V, Santana, EB, Goes, CB, Silva, Neuza Santos de Jesus, Santos, Carlos Antonio de Souza Teles, Rodrigues, LC and Whitworth, J (2021). Seroprevalence of Chikungunya virus and living conditions in Feira de Santana, Bahia-Brazil. S1 Database. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0009289.s001

Tennant, WSD, Cardinale, E, Cêtre-Sossah, C, Moutroifi, Y, Le Godais, G, Colombi, D, Spencer, SEF, Tildesley, MJ, Keeling, MJ, Charafouddine, O, Colizza, V, Edmunds, WJ and Métras, R (2021). wtennant/rvf_comoros: Supporting data and code for 'Modelling the persistence and control of Rift Valley fever virus in a spatially heterogeneous landscape'. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5234876

Timaeus, I (2021). BugBunny/Pathways_to_Low_Fertility. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3627832

Timaeus, I (2021). BugBunny/oRphanhood. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4889479

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Udosen, B, Soremekun, O, Ekenna, C, Idowu Omotuyi, O, Chikowore, T, Nashiru, O and Fatumo, S (2021). Additional file 1 of In-silico analysis reveals druggable single nucleotide polymorphisms in angiotensin 1 converting enzyme involved in the onset of blood pressure. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.17305518.v1

University of Glasgow, MRC/CSO Social and Public Health Sciences, University College London and London School of Hygiene and Tropical Medicine (2021). National Survey of Sexual Attitudes and Lifestyles COVID-19 Study, 2020. [Data Collection]. UK Data Service. http://doi.org/10.5255/UKDA-SN-8865-1

Uyoga, S, Adetifa, IM, Otiende, M, Gitonga, JN, Mugo, D, Nyagwange, J, Karanja, HK, Tuju, J, Makale, J, Aman, R, Mwangangi, M, Amoth, P, Kasera, K, Ng’ang’a, W, Chege, E, Yegon, C, Kithi, K, Odhiambo, E, Rotich, T, Orgut, I, Kihara, S, Bottomley, C, Kagucia, EW, Gallagher, KE, Etyang, A, Voller, S, Lambe, T, Wright, D, Barasa, E, Tsofa, B, Mwangangi, J, Bejon, P, Ochola-Oyier, LI, Warimwe, GM, Agweyu, A and Scott, JAG (2021). Replication Data for: Prevalence of SARS-CoV-2 Antibodies from a one-year National Serosurveillance of Kenyan Blood Transfusion Donors. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/3E1YSQ

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Wang, SY, Stark, A, Evan Ray, Bosse, N, Reich, NG, Sherratt, K, Shah, A, Wattanachit, N, Khoale1096, Huang, YD, Gerding, A, Gruson, H, Cramer, E, Shandross, L, Abbott, S and Funk, S (2021). reichlab/covidHubUtils. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5207939

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Witkowska McConnell, W, Davis, C, Sabir, SR, Garrett, A, Bradley-Stewart, A, Jajesniak, P, Reboud, J, Xu, G, Yang, Z, Gunson, R, Thomson, EC and Cooper, J (2021). Loop mediated isothermal amplification as a powerful tool for early diagnosis of hepatitis C virus. [Data Collection]. University of Glasgow. https://doi.org/10.5525/gla.researchdata.1127

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