A

Abaasa, A and Bahemuka, U (2020). Uganda Police Force - HIV vaccine preparedness dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001579.

Abbas, KM (2020). vaccine-impact/epi_covid. [Data Collection]. Github. https://github.com/vaccine-impact/epi_covid

Abbas, KM, Van Zandvoort, K, Brisson, M and Jit, M (2020). Effects of updated demography, disability weights, and cervical cancer burden on estimates of human papillomavirus vaccination impact at the global, regional, and national levels: a PRIME modelling study. [Data Collection]. The Lancet Global Health. https://doi.org/10.1016/S2214-109X(20)30022-X

Abbott, S, Bekker-Nielsen Dunbar, M and Smith, A (2020). seabbs/getTBinR. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.2547405

Abbott, S, Bennett, C, Hickson, J, Allen, J, Sherratt, K and Funk, S (2020). Collated Results of the National and Subnational Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Tests, Hospital Admissions and Deaths. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/4L3OKY

Abbott, S, Bennett, C, Hickson, J, Allen, J, Sherratt, K and Funk, S (2020). Continent Summary Reproduction Number (R) Based on Reported Deaths. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/A12ADQ

Abbott, S, Bennett, C, Hickson, J, Allen, J, Sherratt, K and Funk, S (2020). Local Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Test Results. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/ISLFJB

Abbott, S, Bennett, C, Hickson, J, Allen, J, Sherratt, K and Funk, S (2020). National Reproduction Number (R) Based on Reported Cases. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/TTLQRN

Abbott, S, Bennett, C, Hickson, J, Allen, J, Sherratt, K and Funk, S (2020). National Reproduction Number (R) Estimates Based on Reported Deaths. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/RBZVJE

Abbott, S, Bennett, C, Hickson, J, Allen, J, Sherratt, K and Funk, S (2020). National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Brazil Based on Test Results. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/METDW2

Abbott, S, Bennett, C, Hickson, J, Allen, J, Sherratt, K and Funk, S (2020). National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Germany Based on Test Results. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/LNMJYJ

Abbott, S, Bennett, C, Hickson, J, Allen, J, Sherratt, K and Funk, S (2020). National and Subnational Estimates of the Covid 19 Reproduction Number (R) for India Based on Test Results. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/PRP6CY

Abbott, S, Bennett, C, Hickson, J, Allen, J, Sherratt, K and Funk, S (2020). National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Italy Based on Test Results. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/8DUSHZ

Abbott, S, Bennett, C, Hickson, J, Allen, J, Sherratt, K and Funk, S (2020). National and Subnational Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Deaths. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/QVWUJ5

Abbott, S, Bennett, C, Hickson, J, Allen, J, Sherratt, K and Funk, S (2020). National and Subnational Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Hospital Admissions. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/CCE4XT

Abbott, S, Bennett, C, Hickson, J, Allen, J, Sherratt, K and Funk, S (2020). National and Subnational Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Test Results. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/S07EZB

Abbott, S, Bennett, C, Hickson, J, Allen, J, Sherratt, K and Funk, S (2020). National and Subnational Estimates of the Covid 19 Reproduction Number (R) for the United States of America Based on Test Results. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/BZ7FPH

Abbott, S, Bosse, N, DeWitt, M, Rau, A, Chateigner, A, Mareschal, S and Hellewell, J (2020). epiforecasts/EpiSoon. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3746394

Abbott, S and Endo, A (2020). idmodelr: Infectious Disease Model Library and Utilities. [Data Collection]. The Comprehensive R Archive Network. https://cran.r-project.org/package=idmodelr

Abbott, S, Funk, S, Munday, JD and Hellewell, J (2020). Pathways to Low Fertility. [Data Collection]. Zenodo, London, United Kingdom. http://doi.org/10.5281/zenodo.3627833

Abbott, S, Funk, S, Munday, JD and Hellewell, J (2020). Wuhan Seeding Vs Transmission. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3630424

Abbott, S, Funk, S, Munday, JD and Hellewell, J (2020). epiforecasts/WuhanSeedingVsTransmission: Resubmission to Wellcome Open Research. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3630424

Abbott, S, Gaythorpe, KA, Imai, N and Liu, Y (2020). seabbs/CovidInterventionReview: CC0 license. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3728162

Abbott, S, Sherratt, K, Funk, S and Hellewell, J (2020). epiforecasts/covid: Submission release. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3746396

Abbott, S, Sherratt, K, Gibbs, H, Finger, F, Campbell, P, Hellewell, J, Barks, P, Meakin, S and Lee, H (2020). epiforecasts/NCoVUtils. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3635417

Abramsky, T and Harvey, S (2020). MAISHA Cluster Randomised Trial - Couples Survey Data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001773.

Abramsky, T and Harvey, S (2020). MAISHA Cluster Randomised Trial - Primary Analysis Dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001775.

Abuga, KM, Rockett, KA, Muriuki, JM, Koch, O, Nairz, M, Sirugo, G, Bejon, P, Kwiatkowski, DP, Prentice, AM and Atkinson, SH (2020). Replication Data for: Interferon-gamma polymorphisms and risk of iron deficiency and anaemia in Gambian children. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/2NKJID

Akello, M, Coutinho, S, Mboowa, MGN, Bukirwa, V, Natukunda, A, Lubyayi, L, Nabakooza, G, Cose, S and Elliott, AM (2020). Internal monitoring within MUII-plus for research capacity development. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001938.

Aldridge, RW, Lewer, D, Beale, S, Johnson, AM, Zambon, M, Hayward, AC and Fragaszy, E (2020). Dataset: Seasonality and immunity to laboratory-confirmed seasonal coronaviruses (HCoV-NL63, HCoV-OC43, and HCoV-229E): results from the Flu Watch cohort study. [Data Collection]. UCL Institute of Health Informatics, London, United Kingdom. https://doi.org/10.14324/000.ds.10093909

Alwy Al-beity, F, Pembe, AB, Marrone, G, Baker, U and Hanson, C (2020). Anonymised data for: "Predictors of change of health workers’ knowledge and skills after the Helping Mothers Survive Bleeding after Birth (HMS BAB) in-facility training in Tanzania". [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0232983.s006

Anvikar, AR, Anna Maria van Eijk, Shah, A, Upadhyay, KJ, Sullivan, S, Patel, AJ, Joshi, JM, Tyagi, S, Singh, R, Gupta, H, Wassmer, S and Carlton, J (2020). Dataset: India ICEMR Severe P. vivax and falciparum Cohort. [Data Collection]. ClinEpiDB. https://clinepidb.org/ce/app/workspace/analyses/DS_3b4a4e8f09

Asio, J, Watera, C, Namuwenge, N, Kirungi, W, Musinguzi, J, Mugagga, K, Busobozi, R, Tusiime, BJ, Lutalo, T, Mbidde, EK and Kaleebu, P (2020). Population-based monitoring of HIV drug resistance early warning indicators in Uganda: A nationally representative survey following revised WHO recommendations: S1 Data. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0230451.s001

Aubry, F, Dabo, S, Manet, C, Filipovic, I, Rose, NH, Miot, EF, Martynow, D, Baidaliuk, A, Merkling, SH, Dickson, LB, Crist, AB, Anyango, VO, Romero-vivas, CM, Vega-Rua, A, Dusfour, I, Jiolle, D, Paupy, C, Mayanja, MN, Lutwama, JJ, Kohl, A, Duong, V, Ponlawat, A, Sylla, M, Akorli, J, Otoo, S, Lutomiah, J, Sang, R, Mutebi, J, Cao-Lormeau, V, Jarman, RG, Diagne, CT, Faye, O, Faye, O, Sall, AA, McBride, CS, Montagutelli, X, Rasic, G and Lambrechts, L (2020). Enhanced Zika virus susceptibility of globally invasive Aedes aegypti populations. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3981205

Avan, B and Berhanu, D (2020). IDEAS Community Base Newborn Care Evaluation, Ethiopia 2013-2017. [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001979.

B

Banks, M, Hameed, S and Kuper, H (2020). Impact of the Disability Allowance in the Maldives - Baseline Dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001698.

Beale, S, Lewer, D, Aldridge, RW, Johnson, AM, Zambon, M, Hayward, A and Fragaszy, E (2020). Household Transmission of Seasonal Coronavirus Infections: Results from the Flu Watch cohort study. [Data Collection]. University College London. https://doi.org/10.5522/04/12383873.v1

Bell, S, Clarke, R, Mounier-Jack, S and Paterson, P (2020). Parents’ and guardians’ views and experiences of accessing routine childhood vaccinations in England during the coronavirus (COVID-19) pandemic: cross-sectional survey and qualitative interview data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001861.

Bell, S, Clarke, R, Mounier-Jack, S and Paterson, P (2020). Parents’ and guardians’ views on the acceptability of a future COVID-19 vaccine for themselves and their children: cross-sectional survey and qualitative interview data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001862.

Besançon, L, Deforet, M, Leyrat, C, Segalas, C, Jiang, H and Masuzzo, P (2020). Open Science during the pandemic. [Data Collection]. OSF. https://osf.io/renxy/

Bhaskaran, K (2020). Clinical code list - all Cancer read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001546.

Bower, H, Akpogheneta, O, Kanneh, Z, Jusu, B, Kanneh, L, Alhasan, F, Gbakie, M and Shieffelin, J (2020). Data for: "Boosting understanding of Lassa Fever virus epidemiology: field testing a novel assay to identify past Lassa Fever virus infection in blood and oral fluids of survivors and unexposed controls in Sierra Leone". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001992.

C

Candido, DS, Claro, IM, de Jesus, JG, Souza, WM, Moreira, FRR, Dellicour, S, Mellan, TA, du Plessis, L, Pereira, RHM, Sales, FCS, Manuli, ER, Thézé, J, Almeida, L, Menezes, MT, Voloch, CM, Fumagalli, MJ, Coletti, TM, da Silva, CAM, Ramundo, MS, Amorim, MR, Hoeltgebaum, HH, Mishra, S, Gill, MS, Carvalho, LM, Buss, LF, Prete, CA, Ashworth, J, Nakaya, HI, Peixoto, PS, Brady, OJ, Nicholls, SM, Tanuri, A, Rossi, Átila D., Braga, CK, Gerber, AL, de C. Guimarães, AP, Gaburo, N, Alencar, CS, Ferreira, AC, Lima, CX, Levi, JE, Granato, C, Ferreira, GM, Francisco, RS, Granja, F, Garcia, MT, Moretti, ML, Perroud, MW, Castiñeiras, Terezinha M. P. P., Lazari, CS, Hill, SC, de Souza Santos, AA, Simeoni, CL, Forato, J, Sposito, AC, Schreiber, AZ, Santos, MNN, de Sá, CZ, Souza, RP, Resende-Moreira, LC, Teixeira, MM, Hubner, J, Leme, PAF, Moreira, RG, Nogueira, ML, Ferguson, NM, Costa, SF, Proenca-Modena, JL, Vasconcelos, ATR, Bhatt, S, Lemey, P, Wu, C, Rambaut, A, Loman, NJ, Aguiar, RS, Pybus, OG, Sabino, EC and Faria, NR (2020). Data from: Evolution and epidemic spread of SARS-CoV-2 in Brazil. [Data Collection]. Dryad. http://doi.org/10.5061/dryad.rxwdbrv5z

Candido, DS, Claro, IM, de Jesus, JG, Souza, WM, Moreira, FRR, Dellicour, S, Mellan, TA, du Plessis, L, Pereira, RHM, Sales, FCS, Manuli, ER, Thézé, J, Almeida, L, Menezes, MT, Voloch, CM, Fumagalli, MJ, Coletti, TM, da Silva, CAM, Ramundo, MS, Amorim, MR, Hoeltgebaum, HH, Mishra, S, Gill, MS, Carvalho, LM, Buss, LF, Prete, CA, Ashworth, J, Nakaya, HI, Peixoto, PS, Brady, OJ, Nicholls, SM, Tanuri, A, Rossi, Átila D., Braga, CK, Gerber, AL, de C. Guimarães, AP, Gaburo, N, Alencar, CS, Ferreira, AC, Lima, CX, Levi, JE, Granato, C, Ferreira, GM, Francisco, RS, Granja, F, Garcia, MT, Moretti, ML, Perroud, MW, Castiñeiras, Terezinha M. P. P., Lazari, CS, Hill, SC, de Souza Santos, AA, Simeoni, CL, Forato, J, Sposito, AC, Schreiber, AZ, Santos, MNN, de Sá, CZ, Souza, RP, Resende-Moreira, LC, Teixeira, MM, Hubner, J, Leme, PAF, Moreira, RG, Nogueira, ML, Ferguson, NM, Costa, SF, Proenca-Modena, JL, Vasconcelos, ATR, Bhatt, S, Lemey, P, Wu, C, Rambaut, A, Loman, NJ, Aguiar, RS, Pybus, OG, Sabino, EC and Faria, NR (2020). Evolution and epidemic spread of SARS-CoV-2 in Brazil. [Data Collection]. Science. https://doi.org/10.1126/science.abd2161

Cansado-Utrilla, C, Jeffries, CL, Kristan, M, Brugman, VA, Heard, P, Camara, G, Sylla, M, Beavogui, AH, Messenger, LA, Irish, SR and Walker, T (2020). An assessment of adult mosquito collection techniques for studying species abundance and diversity in Maferinyah, Guinea. [Data Collection]. Open Science Framework. https://osf.io/pfma3/

Carreira, H (2020). Clinical Codelist - Immunisation against Streptococcus pneumoniae. [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001808.

Carreira, H (2020). Clinical Codelist - Product codes for pneumococcal vaccination. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001806.

Carreira, H (2020). Clinical Codelist - Read codes for pneumococcal vaccination. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001805.

Carreira, H (2020). Clinical codelist - Immunisation codes for pneumococcal vaccination. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001807.

Carreira, H and Muzambi, R (2020). Clinical codelist - Anxiety and depression ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002026.

Carreira, H and Muzambi, R (2020). Clinical codelist - Anxiety and depression read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002025.

Carreira, H and Muzambi, R (2020). Clinical codelist - Severe mental illness ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002063.

Carreira, H and Muzambi, R (2020). Therapy codelist - Anxiety and depression BNF codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002027.

Carreira, H and Muzambi, R (2020). Therapy codelist - Severe mental illness BNF codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002064.

Carvalho, MS, Freitas, LP, Cruz, OG, Brasil, P and Bastos, LS (2020). Dengue and microcephaly cases in Brazil used in Carvalho et al. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3489427

Chandramohan, D, Dicko, A, Zongo, I, Sagara, I, Cairns, M, Kuepfer, I, Diarra, M, Barry, A, Tapily, A, Nikiema, F, Yerbanga, S, Coumare, S, Thera, I, Traore, A, Milligan, P, Tinto, H, Doumbo, O, Ogobara, J and Greenwood, B (2020). AZ-SMC Trial - School child parasitaemia dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001934.

Chandramohan, D, Dicko, A, Zongo, I, Sagara, I, Cairns, M, Kuepfer, I, Diarra, M, Barry, A, Tapily, A, Nikiema, F, Yerbanga, S, Coumare, S, Thera, I, Traore, A, Milligan, P, Tinto, H, Doumbo, O, Ouedraogo, J and Greenwood, B (2020). AZ-SMC Trial - Cross-sectional dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001932.

Chandramohan, D, Dicko, A, Zongo, I, Sagara, I, Cairns, M, Kuepfer, I, Diarra, M, Barry, A, Tapily, A, Nikiema, F, Yerbanga, S, Coumare, S, Thera, I, Traore, A, Milligan, P, Tinto, H, Doumbo, O, Ouedraogo, J and Greenwood, B (2020). AZ-SMC Trial - Drug administration dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001931.

Chandramohan, D, Dicko, A, Zongo, I, Sagara, I, Cairns, M, Kuepfer, I, Diarra, M, Barry, A, Tapily, A, Nikiema, F, Yerbanga, S, Coumare, S, Thera, I, Traore, A, Milligan, P, Tinto, H, Doumbo, O and Ouedraogo, J (2020). AZ-SMC Trial - In vivo treatment efficacy dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001935.

Chandramohan, D, Dicko, A, Zongo, I, Sagara, I, Cairns, M, Kuepfer, I, Diarra, M, Barry, A, Tapily, A, Nikiema, F, Yerbanga, S, Coumare, S, Thera, I, Traore, A, Milligan, P, Tinto, H, Doumbo, O, Ouedraogo, J and Greenwood, B (2020). AZ-SMC Trial - Person-Time dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001928.

Chandramohan, D, Dicko, A, Zongo, I, Sagara, I, Cairns, M, Kuepfer, I, Diarra, M, Barry, A, Tapily, A, Nikiema, F, Yerbanga, S, Coumare, S, Thera, I, Traore, A, Milligan, P, Tinto, H, Doumbo, O, Ouedraogo, J and Greenwood, B (2020). AZ-SMC Trial - Weekly survey dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001933.

Chandramohan, D, Dicko, A, Zongo, I, Sagara, I, Cairns, M, Kuepfer, I, Diarra, M, Barry, A, Tapily, A, Nikiema, F, Yerbanga, S, Coumare, S, Thera, I, Traore, A, Milligan, P, Tinto, H, Doumbo, O, Ouedraogo, J and Greenwood, B (2020). Data repository for AZ-SMC - a trial of seasonal malaria chemoprevention combined with azithromycin in African children. [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/data.00001752.

Chapman, LAC (2020). LloydChapman/VLSpatiotemporalModelling. [Data Collection]. Github. https://github.com/LloydChapman/VLSpatiotemporalModelling

Chase, R, Kerac, M, Grant, A, Manary, M, Briend, A, Opondo, C and Bailey, J (2020). Combined Protocol for Acute Malnutrition (ComPAS) Stage 1 dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001572.

Checchi, F (2020). francescochecchi/aden_covid. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://github.com/francescochecchi/aden_covid

Clifford, S and Quilty, B (2020). cmmid/pcr_test_trace. [Data Collection]. Github. https://github.com/cmmid/pcr_test_trace

Clifford, S, Quilty, BJ, Russell, TW, Liu, Y, Chan, YD, Pearson, CAB, Eggo, RM, Endo, A, CMMID COVID-19 Working Group, Flasche, S and Edmunds, WJ (2020). cmmid/travel_screening_strategies. [Data Collection]. Github. https://github.com/cmmid/travel_screening_strategies

Clifford, S, Quilty, B, CMMID nCoV working group, Pearson, C, Flasche, S and Eggo, RM (2020). Effectiveness of airport-based interventions at detecting travellers and delaying an outbreak of COVID-19 (formerly 2019-nCoV). [Data Collection]. Github. https://github.com/cmmid/screening_outbreak_delay

Colbourn, T, Waites, W, Manheim, D, Sturniolo, S, Kerr, CC, Panovska-Griffiths, J and Colbourn, G (2020). ptti/ptti: Modelling the health and economic impacts of different testing and tracing strategies for COVID-19 in the UK. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4298798

Coletti, P, Wambua, J, Gimma, A, Willem, L, Vercruysse, S, Vanhoutte, B, Jarvis, CI, Van zandvoort, K, Edmunds, WJ, Beutels, P and Hens, N (2020). CoMix social contact data (Belgium). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4035001

Coletti, P, Wambua, J, Gimma, A, Willem, L, Vercruysse, S, Vanhoutte, B, Jarvis, CI, Van Zandvoort, K, Edmunds, J, Beutels, P and Hens, N (2020). Social contact data from CoMix survey (Belgium). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4035001

Collinson, S, Timothy, J, Zayzay, SK, Kollie, KK, Lebas, E, Candy, N, Halliday, KE, Pullan, RL, Fallah, M, Walker, SL and Marks, M (2020). The prevalence of scabies in Monrovia, Liberia: A population-based survey. Study Dataset. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0008943.s001

Cox, SE, White, LV, Faguer, B, Edwards, T, Lee, N, Solon, J, Ariyoshi, K, Castro, MC, Saludar, NR, Saito, N and Calapis, RW (2020). Co-morbidities (malnutrition, diabetes, anaemia, HIV, hypertension) and quality of life in persons with tuberculosis in the Philippines. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.11695467.v1

Cruz-Saavedra, L, Vallejo, GA, Guhl, F, Messenger, LA and Ramírez, JD (2020). Transcriptional remodeling during metacyclogenesis in Trypanosoma cruzi I. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.12852045.v3

D

Davidson, J, Warren-Gash, C and Mcdonald, H (2020). Clinical codelist - CPRD GOLD - chronic kidney disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002219.

Davidson, J, Warren-Gash, C and Mcdonald, H (2020). Therapy codelist - CPRD GOLD - Influenza vaccine. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002229.

Davidson, J, Warren-Gash, C, Mcdonald, H, Smeeth, L and Banerjee, A (2020). Clinical codelist - CPRD Aurum - Influenza vaccine. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002226.

Davidson, J, Warren-Gash, C, Mcdonald, H, Smeeth, L and Banerjee, A (2020). Therapy codelist - CPRD Aurum - Pneumococcal vaccine. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002236.

Davies, NG (2020). cmmid/covid-age. [Data Collection]. Github. https://github.com/cmmid/covid-age

Davies, NG (2020). nicholasdavies/covidm-alpha. [Data Collection]. Github. https://github.com/nicholasdavies/covidm-alpha

Davies, NG, Kucharski, AJ, Eggo, RM, Gimma, A, COVID-19 Working Group and Edmunds, WJ (2020). cmmid/covid-uk. [Data Collection]. Github. https://github.com/cmmid/covid-uk

Dawa, J, Emukule, GO, Barasa, E, Widdowson, MA, Anzala, O, Van Leeuwen, E, Baguelin, M, Chaves, SS and Eggo, RM (2020). Additional file 3 of Seasonal influenza vaccination in Kenya: an economic evaluation using dynamic transmission modelling. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.12831246.v1

Dawa, J, Emukule, GO, Barasa, E, Widdowson, MA, Anzala, O, Van leeuwen, E, Baguelin, M, Chaves, SS and Eggo, RM (2020). Additional file 1 of Seasonal influenza vaccination in Kenya: an economic evaluation using dynamic transmission modelling. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.12831240.v1

DeLacey, E (2020). Data for: "The nutritional status of children living within institutionalized care: a retrospective analysis with control charts for program monitoring". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001994.

Deenan, P, Koole, O and Wong, E (2020). Performance of computer-aided chest radiography for detection of TB in a community-based multimorbidity cohort in rural KwaZulu-Natal. [Data Collection]. AHRI Data Repository. https://doi.org/10.23664/AHRI.VUKUZAZI.CHESTXRAYPAPERDATA

Dingle, A, Schaeferhoff, M, Borghi, J, Lewis Sabin, M, Arregoces, L, Martinez-alvarez, M and Pitt, C (2020). Aid for reproductive, maternal, newborn and child health: data and analysis from application of the Muskoka2 method, 2002-2017. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001526.

Dorman, MJ, Domman, D, Poklepovich, T, Tolley, C, Zolezzi, G, Kane, L, Viñas, MR, Panagópulo, M, Moroni, M, Binsztein, N, Caffer, MI, Clare, S, Dougan, G, Salmond, GPC, Parkhill, J, Campos, J and Thomson, NR (2020). Supporting data for "Genomics of the Argentinian cholera epidemic elucidate the contrasting dynamics of epidemic and endemic Vibrio cholerae". [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.11310131.v1

Dorsey, G, Kamya, M, Greenhouse, B, Arinaitwe, E, Kilama, M, Mayanja-Kizza, H, Nankabirwa, J, Katureebe, A, Kakande, E, Rek, J, Nsobya, S, Kiggundu, M, Mawejje, H, Nzarubara, B, Lavoy, G, Ruhamyankaka, E, Kigozi, S, Rosenthal, P, Rodriguez-Barraquer, I, Charlebois, E, Clark, T, Staedke, SG, Drakeley, C, Donnelly, M, Lindsay, S, Smith, D and Tatem, A (2020). PRISM ICEMR Cohort. [Data Collection]. ClinEpiDB. https://clinepidb.org/ce/app/record/dataset/DS_0ad509829e

Dziva Chikwari, C (2020). Bridging the Gap in HIV testing and care for children in Zimbabwe (B-GAP). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001798.

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Ellis, J (2020). WOR CM co-infections data file.xlsx. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.13295858.v1

Endo, A, Abbott, S, Kucharski, AJ and Funk, S (2020). Extended data: Estimating the overdispersion in COVID-19 transmission using outbreak sizes outside China. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3740348

Endo, A, Abbott, S, Kucharski, AJ and Funk, S (2020). akira-endo/COVID19_clustersize: Estimating the amount of superspreading using outbreak sizes of COVID-19 outside China. [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.3741744

Endo, A and Kucharski, AJ (2020). akira-endo/COVID19_backwardtracing. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4050267

Enria, L, Waterlow, N, Rogers, N, Brindle, H, Lal, S, Eggo, RM, Lees, S and Roberts, C (2020). Trust and Transparency in times of Crisis: Results from an Online Survey During the First Wave (April 2020) of the COVID-19 Epidemic in the UK. [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001860.

Enria, L, Waterlow, N, Rogers, N, Brindle, H, Lal, S, Eggo, RM, Lees, S and Roberts, C (2020). Trust and Transparency in times of Crisis: Results from an Online Survey During the First Wave (April 2020) of the COVID-19 Epidemic in the UK - Qualitative Data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001859.

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Fabian, ID, Stacey, A, Foster, A, Kivelä, TT, Munier, F, Cassoux, N and Bowman, R (2020). Global Retinoblastoma Presentation 2017 data, on behalf of the Global Retinoblastoma Study Group. [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.3727687

Falconer, J (2020). Search strategies for: How can e-health interventions reduce the ‘syndemic’ of HIV/STIs and sexual risk, substance use and mental ill health among men who have sex with men? [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001751.

Falconer, J (2020). Search strategies to investigate STI testing amongst PrEP users. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001989.

Fernandez, MAL, Zivich, P and Smith, MJ (2020). migariane/TutorialCausalInferenceEstimators: Computational Causal Inference for Applied Researchers. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4424912

Fernández-Grandon, GM, Gezan, SA, Armour, JAL, Pickett, JA and Logan, J (2020). Raw data for both dizygotic and monozygotic twins from Y-tube olfactometer experiment. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0122716.s001.

Fielding, K (2020). Data set for the comparison of the performance of QuantiFERON-TB Gold Plus with QuantiFERON-T Gold in-tube among highly TB exposed gold miners in South Africa. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001891.

Flasche, S (2020). StefanFlasche/Pneumo_Trans_Inf. [Data Collection]. Github. https://github.com/StefanFlasche/Pneumo_Trans_Inf

Forbes, H (2020). Clinical Code List - Immunosuppression Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001584.

Forbes, H (2020). Clinical Code List - Moderate Immunosuppression ICD-10 Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001586.

Forbes, H (2020). Clinical Code List - Moderate Immunosuppression OPCS Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001587.

Forbes, H (2020). Clinical Code List - Moderate Immunosuppression Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001585.

Forbes, H (2020). Clinical Code List - Smoking Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001602.

Forbes, H (2020). Clinical Code List - Zoster Comorbidity Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001600.

Forbes, H (2020). Clinical Code List - Zoster Comorbidity Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001601.

Forbes, H (2020). Clinical Code List - Zoster Complication ICD-10 Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001598.

Forbes, H (2020). Clinical Code List - Zoster Complication OPCS Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001599.

Forbes, H (2020). Clinical Code List - Zoster Complication Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001596.

Forbes, H (2020). Clinical Code List - Zoster Complication SNOMED Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001597.

Forbes, H (2020). Clinical Code List - Zoster Vaccination Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001604.

Forbes, H (2020). Clinical Code List - Zoster Vaccination SNOMED Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001605.

Forbes, H (2020). Clinical Code List - Zoster and PHN Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001581.

Forbes, H (2020). Clinical Code List - Zoster and PHN Diagnosis Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001582.

Forbes, H (2020). Clinical Code List - Zoster and PHN ICD-10 Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001583.

Forbes, H (2020). Clinical Code list - Smoking SNOMED Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001603.

Forbes, H (2020). Code lists for: "Estimating the incidence of acute complications of herpes zoster among immunocompetent adults in England". [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001609

Forbes, H (2020). Therapy Code List - Antiviral BNF Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001594.

Forbes, H (2020). Therapy Code List - Antiviral Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001595.

Forbes, H (2020). Therapy Code List - Immunosuppression Aurum Therapy Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001589.

Forbes, H (2020). Therapy Code List - Moderate Immunosuppression BNF Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001588.

Forbes, H (2020). Therapy Code List - Zoster Vaccination BNF Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001606.

Forbes, H (2020). Therapy Code List - Zoster Vaccination Therapy Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001607.

Frison, S (2020). Wasting prevention CHNRI dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001552.

Funk, S and Finger, F (2020). sbfnk/rbi.helpers. [Data Collection]. Github. https://github.com/sbfnk/rbi.helpers

G

Gasparrini, A (2020). gasparrini/2019_vicedo-cabrera_Epidem_Rcodedata. [Data Collection]. Github. https://github.com/gasparrini/2019_vicedo-cabrera_Epidem_Rcodedata

Geer, A and Prowse, D (2020). PharmacoTXA Trial: Pharmacokinetics of Tranexamic Acid after oral, intramuscular or intravenous administration: a prospective, randomised, cross-over trial in healthy volunteers. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://freebird.lshtm.ac.uk/home/available-trials/

Gibbs, H, Abbott, S and Funk, S (2020). RtD3. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4011841

Gibbs, H, CMMID nCov Working Group, Eggo, RM, Grundy, C and Kucharski, AJ (2020). UK Colocation Dashboard. [Data Collection]. Github. https://cmmid.github.io/colocation_dashboard_cmmid/

Glynn, J (2020). Systematic analysis of infectious disease outcomes by age. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001787.

Gon, G (2020). CLEAN study dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001937.

Gon, G (2020). Data for "HANDS project - Hand-hygiene of Attendants for Newborn Deliveries and Survival". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001945.

Greener, R (2020). Machine learning methods to investigate segments of the British consumer food market and to predict weight status: Source code. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3992349

Gupta-Wright, A (2020). Virological failure, HIV-1 drug resistance, and early mortality in adults admitted to hospital in Malawi: an observational cohort study data set. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001824.

H

Harris, F (2020). Interstate trade of cereals in India. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001870.

Hellewell, J (2020). cmmid/ringbp. [Data Collection]. Github. https://github.com/cmmid/ringbp

Hellewell, J, Abbott, S, Gimma, A, Bosse, N, Jarvis, C, Russell, T, Munday, J, Kucharski, A, Edmunds, WJ, Funk, S, Eggo, R, Sun, F, Flasche, S, Quilty, B, Davies, N, Liu, Y, Clifford, S, Klepac, P, Jit, M, Diamond, C, Gibbs, H and Van Zandvoort, K (2020). Feasibility of controlling COVID-19 outbreaks by isolation of cases and contacts. [Data Collection]. Github. https://github.com/cmmid/ringbp/

Hellewell, J, Lucas, T, Davis, E, Abbott, S, Gimma, A and Thompson, R (2020). timcdlucas/ringbp: Code as used in the paper "Engagement and adherence trade-offs for SARS-CoV-2 contact tracing". [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4221774

Hellewell, J, Russell, TW, The SAFER Investigators and Field Study Team, The Crick COVID-19 Consortium, CMMID COVID-19 working group, Beale, R, Kelly, G, Houlihan, C, Nastouli, E and Kucharski, AJ (2020). cmmid/pcr-profile. [Data Collection]. Github. https://github.com/cmmid/pcr-profile

Herrett, E (2020). emilyherrett/qrisk_cprd_gold: QRISK bundle version 2.0. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3981237

Hiemstra, TF, Smith, JC, Lim, K, Xu, D, Kulkarni, S, Bradley, JA, Paapstel, K, Schoenmakers, I, Bradley, JR, Tomlinson, L, McEniery, CM and Wilkinson, IB (2020). Effect of kidney donation on bone mineral metabolism. [Data Collection]. Plos One. https://doi.org/10.1371/journal.pone.0235082

Hogset, H, Horgan, C, Armstrong, J, Bergholt, M, Torraca, V, Chen, Q, Keane, T, Burgeon, L, Dallman, M, Mostowy, S and Stevens, M (2020). Research data supporting "In Vivo Biomolecular Imaging of Zebrafish Embryos using Confocal Raman Spectroscopy". [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4059923

Hollingworth, S, Ruiz, F, Gad, M and Chalkidou, K (2020). iDSI HTA survey SSA Data sharing. [Data Collection]. The University of Queensland, Brisbane, Australia. https://doi.org/10.14264/uql.2020.178

Holt, KE, Lam, M and Wick, R (2020). Kleborate v2.0.0. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4923014

Hughes, R, Kitsao-Wekulo, P, Bhopal, S, Kimani-Murage, E, Hill, Z and Kirkwood, B (2020). The Nairobi Early Childcare in Slums (NECS) Study. [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001780.

Hutchins, H, Power, G, Ant, T, Teixeira da Silva, E, Goncalves, A, Rodrigues, A, Logan, J, Mabey, D and Last, AR (2020). Survey data on knowledge, attitudes and practices regarding Malaria and bed net usage on Bubaque Island, Guinea-Bissau. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001849.

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Indravudh, PP (2020). Primary data for a cluster-randomised trial of community-led delivery of HIV self-testing in Malawi (HIV Self-Testing Africa [STAR]). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001971.

Indriani, C, Tantowijoyo, W, Rancès, E, Andari, B, Prabowo, E, Yusdi, D, Ansari, MR, Wardana, DS, Supriyati, E, Nurhayati, I, Ernesia, I, Setyawan, S, Fitriana, I, Arguni, E, Amelia, Y, Ahmad, RA, Jewell, NP, Dufault, SM, Ryan, PA, Green, BR, McAdam, TF, O'Neill, SL, Tanamas, SK, Simmons, CP, Anders, KL and Utarini, A (2020). Reduced dengue incidence following deployments of Wolbachia-infected Aedes aegypti in Yogyakarta, Indonesia: a quasi-experimental trial using controlled interrupted time series analysis. [Data Collection]. Gates Open Research. https://doi.org/10.12688/gatesopenres.13122.1

Iwagami, M and Tomlinson, LA (2020). Clinical codelist - Alcohol status read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001691.

Iwagami, M and Tomlinson, LA (2020). Clinical codelist - Cancer codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001677.

Iwagami, M and Tomlinson, LA (2020). Clinical codelist - Chronic liver disease codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001681.

Iwagami, M and Tomlinson, LA (2020). Clinical codelist - Chronic pulmonary disease codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001682.

Iwagami, M and Tomlinson, LA (2020). Clinical codelist - Diabetes codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001672.

Iwagami, M and Tomlinson, LA (2020). Clinical codelist - Dry cough codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001693.

Iwagami, M and Tomlinson, LA (2020). Clinical codelist - HIV and AIDS read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001683.

Iwagami, M and Tomlinson, LA (2020). Clinical codelist - Heart failure read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001674.

Iwagami, M and Tomlinson, LA (2020). Clinical codelist - Hypertension read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001671.

Iwagami, M and Tomlinson, LA (2020). Clinical codelist - Inflammatory bowel disease codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001679.

Iwagami, M and Tomlinson, LA (2020). Clinical codelist - Myocardial infarction codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001673.

Iwagami, M and Tomlinson, LA (2020). Clinical codelist - Proteinuria diagnosis codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001675.

Iwagami, M and Tomlinson, LA (2020). Clinical codelist - Renal replacement therapy codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001676.

Iwagami, M and Tomlinson, LA (2020). Clinical codelist - Rheumatoid arthritis codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001678.

Iwagami, M and Tomlinson, LA (2020). Clinical codelist - Smoking status read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001690.

Iwagami, M and Tomlinson, LA (2020). Clinical codelist - Systematic lupus erythematosus codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001680.

Iwagami, M and Tomlinson, LA (2020). Clinical codelist - Zoster codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001692.

Iwagami, M and Tomlinson, LA (2020). Codelist for: "Comparisons of Staphylococcus aureus infection and other outcomes between users of angiotensin-converting-enzyme inhibitors and angiotensin II receptor blockers: lessons for COVID-19 from a nationwide cohort study". [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001668.

Iwagami, M and Tomlinson, LA (2020). Therapy codelist - ACEI codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001669.

Iwagami, M and Tomlinson, LA (2020). Therapy codelist - ARB codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001670.

Iwagami, M and Tomlinson, LA (2020). Therapy codelist - Beta blocker. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001684.

Iwagami, M and Tomlinson, LA (2020). Therapy codelist - Calcium channel blocker codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001685.

Iwagami, M and Tomlinson, LA (2020). Therapy codelist - Diuretic codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001687.

Iwagami, M and Tomlinson, LA (2020). Therapy codelist - Oral corticosteroid. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001689.

Iwagami, M and Tomlinson, LA (2020). Therapy codelist - Statin codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001686.

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Jarvis, C, Van zandvoort, K, Gimma, A, Prem, K, CMMID, Cwg, Klepac, P, Rubin, GJ and Edmunds, WJ (2020). Contact survey during COVID-19. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3741391

Jombart, T, Abbott, S, Gimma, A, Van zandvoort, K and Jarvis, C (2020). Inferring COVID-19 cases from recent death. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3733046

Jombart, T, Abbott, S, Gimma, A, Zandvoort, K, Clifford, S, Jarvis, C, Russell, T, Funk, S, Gibbs, H, Eggo, RM, Kucharski, AJ, CMMID COVID-19 Working Group and Edmunds, WJ (2020). Inferring COVID-19 cases from deaths of confirmed cases. [Data Collection]. CMMID Repository. https://cmmid.github.io/visualisations/inferring-covid19-cases-from-deaths

Jombart, T, Clifford, S, Pearson, Carl A. B. Pearson, Rees, E, Nightingale, E, Procter, S and Knight, G (2020). thibautjombart/covid19_bed_occupancy: Second major release. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3746662

Jombart, T, Kamvar, ZN, Collins, C, Luštrik, R, Beugin, M, Knaus, BJ, Solymos, P, Mikryukov, V, Schliep, K, Maié, T, Morkovsky, L, Ahmed, I, Cori, A, Calboli, F, Ewing, R, Michaud, F, DeCamp, R and Courtiol, A (2020). adegenet: Exploratory Analysis of Genetic and Genomic Data. [Data Collection]. The Comprehensive R Archive Network. https://cran.r-project.org/web/packages/adegenet/

Jombart, T, Nouvellet, P, Bhatia, S, Kamvar, ZN, Taylor, T and Ghozzi, S (2020). projections: Project Future Case Incidence. [Data Collection]. The Comprehensive R Archive Network. https://cran.r-project.org/package=projections

Jombart, T and Schumacher, D (2020). trendbreaker 0.1.0: Detect Changes in Temporal Trends. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3888493

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Kanjala, C, Glynn, JR and Fine, P (2020). Effect of repeat BCG on all-cause mortality: a double-blind randomised placebe-controlled trial in Malawi. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001872.

Kanjala, C, Gregory, A, Greenfield, J, Slaymaker, E and Todd, J (2020). User requirements elicitation study for ALPHA network data provenance documentation browsing software. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001522.

Keogh, R, Seaman, SR, Gran, JM and Vansteelandt, S (2020). Causal Sim code. [Data Collection]. Github. https://github.com/ruthkeogh/causal_sim

Kerac, M, Angood, C, Mayberry, A and Lelijveld, N (2020). Treatment of child wasting: Child Health Research Initiative (CHNRI) prioritisation exercise dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001882.

Kerac, M, Brugaletta, C and Le Roch, K (2020). Breastfeeding assessment tools for at-risk and malnourished infants aged under 6 months old: a systematic review. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001881.

Kissler, SM, Klepac, P, Tang, M, Conlan, AJ and Gog, JR (2020). skissler/haslemere. [Data Collection]. Github. https://github.com/skissler/haslemere

Klepac, P, Kucharski, AJ, Conlan, AJ, Kissler, S, Tang, M, Fry, H and Gog, JR (2020). Contacts in context: large-scale setting-specific social mixing matrices from the BBC Pandemic project. [Data Collection]. Medrxiv. https://doi.org/10.1101/2020.02.16.20023754

Know Your Heart study (2020). Know Your Heart meta-data repository. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001631.

Koltai, M (2020). sysbio-curie/exact-stoch-log-mod. [Data Collection]. GitHub. https://github.com/sysbio-curie/exact-stoch-log-mod

Krug, C, Lynch, C, Cavallaro, F and Wong, K (2020). Evaluating the informed push model intervention in Senegal. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001570.

Kucharski, AJ, Russell, TW, Diamond, C, CMMID nCoV working group, Funk, S and Eggo, RM (2020). Probability of a large 2019-nCoV outbreak following introduction of cases. [Data Collection]. Github. https://cmmid.github.io/visualisations/new-outbreak-probability

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Labadie, T and Roy, P (2020). A non enveloped arbovirus released in lysosome-derived extracellular vesicles induces super infection exclusion. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.13066910.v1

Lawn, JE, Waiswa, P, Waiswa, JA, Kwesiga, D, Blencowe, H, Baschieri, A, Gordeev, VS and EN-INDEPTH Collaborator Group (2020). Every Newborn INDEPTH (EN-INDEPTH) Study - Additional Materials. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001556.

Lazarus, JV, Ratzan, S, Palayew, A, Billari, FC, Binagwaho, A, Kimball, S, Larson, HJ, Melegaro, A, Rabin, K, White, TM and El-Mohandes, A (2020). COVID-SCORE: A global survey to assess public perceptions of government responses to COVID-19 (COVID-SCORE-10). [Data Collection]. PLoS One. https://doi.org/10.1371/journal.pone.0240011

Lazo-Porras, M, Bernabe-Ortiz, A, Taype-Rondan, A, Gilman, RH, Malaga, G, Manrique, H, Neyra, L, Calderon, J, Pinto, M, Armstrong, DG, Montori, VM and Miranda, JJ (2020). Data for: "Foot thermometry with mHeath-based supplementation to prevent diabetic foot ulcers: A randomized controlled trial". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002334.

Leclerc, QJ, Fuller, NM, Knight, LE, Funk, S and Knight, GM (2020). COVID19 settings of transmission - collected reports database. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.12173343.v5

Leclerc, QJ, Nightingale, E and Abbott, S (2020). qleclerc/nhs_pathways_report. [Data Collection]. Github. https://github.com/qleclerc/nhs_pathways_report

Leng, T and Flasche, S (2020). tsleng93/SocialBubble: Social Bubble (including density dependence). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3982789

Lenhart, A, Morrison, AC, Paz-Soldan, VA, Forshey, BM, Cordova-Lopez, JJ, Astete, H, Elder, JP, Sihuincha, M, Gotlieb, EE, Halsey, ES, Kochel, TJ, Scott, TW, Alexander, N and McCall, PJ (2020). The impact of insecticide treated curtains on dengue virus transmission: A cluster randomized trial in Iquitos, Peru. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0008097.s003

Leung, K, Jit, M, Lau, EHY and Wu, JT (2020). Social contact data for Hong Kong. [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.3874808

Lewer, D, Padmanathan, P, Arfeen, MNU, Denaxas, S, Forbes, H, Gonzalez-Izquierdo, A and Hickman, M (2020). Illicit opioid use. [Data Collection]. HDR UK CALIBER Phenotype Library. https://phenotypes.healthdatagateway.org/phenotypes/PH343/version/686/detail/

Li, E, Mawji, A, Akech, S, Chandna, A, Kissoon, N, Kortz, T, Lubell, Y, Turner, P, Wiens, M and Ansermino, M (2020). Guidelines for the standardized collection of predictor variables in studies for pediatric sepsis (guidelines)~Pediatric Sepsis Predictors Standardization (PS2) Working Group. [Data Collection]. Scholars Portal Dataverse. https://doi.org/10.5683/SP2/02LVVT

Limbada, M, Shibwela, O, Macleod, D and Ayles, H (2020). Data for: Acceptability and Preferences of two different Community Models of ART delivery in a high prevalence Urban Setting in Zambia, nested within the HPTN 071 (PopART) trial. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001657.

Liu, Y (2020). yangclaraliu/COVID19_NPIs_vs_Rt. [Data Collection]. Github. https://github.com/yangclaraliu/COVID19_NPIs_vs_Rt

Liu, Y, Funk, S and Flasche, S (2020). yangclaraliu/2019nCoV_proportion_asym: WOR Submission. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3709941

Liu, Y, Gong, W, Clifford, S, Sundaram, ME, CMMID COVID-19 Working Group, Jit, M, Flasche, S and Klepac, P (2020). yangclaraliu/covid_surveillance_strategy: WOR Submission. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4017353

London School of Hygiene & Tropical Medicine (2020). P.vivax whole genome sequencing. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/data/view/PRJEB36199

London School of Hygiene & Tropical Medicine (2020). TB WGS Tanzania. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/data/view/PRJEB29435

Lopez-Bernal, J, Cummins, S and Gasparrini, A (2020). gasparrini/2017_lopezbernal_IJE_codedata. [Data Collection]. GitHub. http://www.ag-myresearch.com/2017_lopezbernal_ije.html

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MRC Unit The Gambia at LSHTM (2020). RNAseq from nasopharyngeal swab RNA prior to intranasal live attenuated influenza vaccine in children (human). [Data Collection]. NCBI BioProject. https://www.ncbi.nlm.nih.gov/bioproject/670718

Malhotra, A (2020). Clinical code list - Anaemia. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001920.

Malhotra, A (2020). Clinical code list - Anorexia. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001915.

Malhotra, A (2020). Clinical code list - Back pain. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001922.

Malhotra, A (2020). Clinical code list - Constipation. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001921.

Malhotra, A (2020). Clinical code list - Disturbances in smell and taste. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001918.

Malhotra, A (2020). Clinical code list - Diverticular disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001924.

Malhotra, A (2020). Clinical code list - Fatigue. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001901.

Malhotra, A (2020). Clinical code list - Fever. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001917.

Malhotra, A (2020). Clinical code list - Irritable Bowel Syndrome. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001923.

Malhotra, A (2020). Clinical code list - Malaise. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001914.

Malhotra, A (2020). Clinical code list - Obesity. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001900.

Malhotra, A (2020). Clinical code list - Pancreatitis. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001919.

Malhotra, A (2020). Clinical code list - Weakness. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001916.

Malhotra, A (2020). Clinical code list - Weight loss. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001899.

Mansfield, KE, Nitsch, D, Smeeth, L, Iwagami, M, Johnston, R and Tomlinson, LA (2020). ISAC Protocol 17_197R: The effect of renin-angiotensin system inhibitors on haemoglobin. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/PUBS.04656899

Masselot, P (2020). PierreMasselot/Sedimentation_analysis. [Data Collection]. Github. https://github.com/PierreMasselot/Sedimentation_analysis

Matos, M, Reis, J, Smythe, T, Duttine, A, Ferrite, S and Kuper, H (2020). The feasibility of a group intervention for children with congenital zika syndrome – qualitative dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001762.

Matowo, NS, Tanner, M, Munhenga, G, Mapua, SA, Finda, M, Utzinger, J, Ngowi, V and Okumu, FO (2020). Additional file 1 of Patterns of pesticide usage in agriculture in rural Tanzania call for integrating agricultural and public health practices in managing insecticide-resistance in malaria vectors. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.12668036.v1

Maxwell, S, Gafos, M, Moncrieff, M, Shahmanesh, M and Stirrup, O (2020). STD906927 Supplemental material - Supplemental material for Pre-exposure prophylaxis use among men who have sex with men who have experienced problematic chemsex. [Data Collection]. SAGE Journals. https://doi.org/10.25384/SAGE.11881884.v1

Mayhew, S and Richards, P (2020). Ebola Gbalo: Building Resilient Health Systems in post-Ebola Sierra Leone. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001830.

McCartney, D, Min, J, Richmond, R, Lu, A, Sobczyk, M, Davies, G, Broer, L, Guo, X, Jeong, A, Jung, J, Kasela, S, Katrinli, S, Kuo, P, Matias-Garcia, P, Mishra, P, Nygaard, M, Palviainen, T, Patki, A, Raffield, L, Ratliff, S, Richardson, T, Robinson, O, Sorensen, M, Sun, D, Tsai, P, van der Zee, M, Wang, X, Wang, Y, Xia, R, Xu, Z, Yao, J, Zhao, W, Deary, I, Relton, CL, Horvath, S and Marioni, R (2020). Genome-wide association studies identify 137 loci for DNA methylation biomarkers of aging. [Data Collection]. University of Edinburgh, Edinburgh, Scotland.

McKenna, A, Ijaz, UZ, Kelly, C, Linton, M, Sloan, WT, Green, BD, Lavery, U, Dorrell, N, Wren, BW, Richmond, A, Corcionivoschi, N and Gundogdu, O (2020). Additional file 11 of Impact of industrial production system parameters on chicken microbiomes: mechanisms to improve performance and reduce Campylobacter. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.12936381.v1

Mcdonald, H, Evans, D, Clay, S, Edelstein, M and Thomas, S (2020). Clinical risk groups for Pneumococcal Polysaccharide Vaccine. [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001659.

Mcdonald, H, Evans, D, Clay, S, Edelstein, M and Thomas, S (2020). Immunisation risk group - Cardiac disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001661.

Mcdonald, H, Evans, D, Clay, S, Edelstein, M and Thomas, S (2020). Immunisation risk group - Diabetes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001665.

Mcdonald, H, Evans, D, Clay, S, Edelstein, M and Thomas, S (2020). Immunisation risk group - chronic kidney disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001664.

Mcdonald, H, Evans, D, Clay, S, Edelstein, M and Thomas, S (2020). Immunisation risk group - chronic respiratory disease without asthma. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001663.

Mcdonald, H, Evans, D, Clay, S, Edelstein, M and Thomas, S (2020). Immunisation risk group - liver disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001662.

Mcharo, R, Olomi, W, Mayaud, P, Msuya, SE and Philippe , (2020). Risky sexual behaviours among young adults attending Higher Learning Institutions in Mbeya-Tanzania. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.12806948.v2

Mendoza, C, Jaramillo, G, Ant, TH, Power, GM, Jones, R, Quintero, J, Alexander, N, Webster, J, Osorio, L and Logan, J (2020). An investigation into the knowledge, perceptions and role of personal protective technologies in Zika prevention in Colombia. [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.3596686

Mendoza, C, Jaramillo, G, Ant, T, Power, GM, Jones, R, Quintero, J, Alexander, N, Webster, J, Osorio, L and Logan, J (2020). An investigation into the knowledge, perceptions and role of personal protective technologies in Zika prevention in Colombia. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0007970.s001

Mishra, S (2020). Rapid Assessment of Avoidable Blindness Dataset: Nepal, Gandaki Province (2020). [Data Collection]. London School of Hygiene & Tropical Medicine RAAB Repository. https://doi.org/10.17037/RAABDATASET.00000377.

Mishra, S (2020). Rapid Assessment of Avoidable Blindness Dataset: Nepal, Koshi Province (2020). [Data Collection]. London School of Hygiene & Tropical Medicine RAAB Repository. https://doi.org/10.17037/RAABDATASET.00000378.

Mishra, S (2020). Rapid Assessment of Avoidable Blindness Dataset: Nepal, Madhesh Province (2020). [Data Collection]. London School of Hygiene & Tropical Medicine RAAB Repository. https://doi.org/10.17037/RAABDATASET.00000379.

Mohammed, S, Larsen-Reindorf, RE and Mohammed (2020). Menstrual knowledge, sociocultural restrictions, and barriers to menstrual hygiene management in Ghana: Evidence from a multi-method survey among adolescent schoolgirls and schoolboys. S1 Questionnaire. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0241106.s001

Mooney, JP, Qendro, T, Keith, M, Philbey, AW, Groves, HT, Tregoning, JS, Goodier, MR and Riley, EM (2020). Data_Sheet_2_Natural Killer Cells Dampen the Pathogenic Features of Recall Responses to Influenza Infection. [Data Collection]. Frontiers. https://doi.org/10.3389/fimmu.2020.00135.s002

Mosha, MV, Kasagama, E, Ayieko, P, Todd, J, Msuya, SE, Grosskurth, H and Filteau, S (2020). Validation of self-reported physical activity by accelerometry among primary school children in Kilimanjaro, Tanzania: a pilot study. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.12763946.v2

Mousa, A, Al-Taiar, A, Anstey, NM, Badaut, C, Barber, BE, Bassat, Q, Challenger, JD, Cunnington, AJ, Datta, D, Drakeley, C, Ghani, AC, Gordeuk, VR, Grigg, MJ, Hugo, P, John, CC, Mayor, A, Migot-Nabias, F, Opoka, RO, Pasvol, G, Rees, C, Reyburn, H, Riley, EM, Shah, BN, Sitoe, A, Sutherland, CJ, Thuma, PE, Unger, SA, Viwami, F, Walther, M, Whitty, CJM, William, T and Okell, LC (2020). S1 Data - The impact of delayed treatment of uncomplicated P. falciparum malaria on progression to severe malaria: A systematic review and a pooled multicentre individual-patient meta-analysis. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pmed.1003359.s031

Mousa, A, Al-Taiar, A, Anstey, NM, Badaut, C, Barber, BE, Bassat, Q, Challenger, JD, Cunnington, AJ, Datta, D, Drakeley, C, Ghani, AC, Gordeuk, VR, Grigg, MJ, Hugo, P, John, CC, Mayor, A, Migot-Nabias, F, Opoka, RO, Pasvol, G, Rees, C, Reyburn, H, Riley, EM, Shah, BN, Sitoe, A, Sutherland, CJ, Thuma, PE, Unger, SA, Viwami, F, Walther, M, Whitty, CJM, William, T and Okell, LC (2020). S2 Data - The impact of delayed treatment of uncomplicated P. falciparum malaria on progression to severe malaria: A systematic review and a pooled multicentre individual-patient meta-analysis. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pmed.1003359.s032

Mpairwe, H and Webb, E (2020). SONA Project - Anxiety Disorders and Asthma Dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001893.

Mpairwe, H and Webb, E (2020). SONA project - Risk factors for allergy-related diseases among schoolchildren in Uganda. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001761.

Mudzengi, D, Sweeney, S, Hippner, P, Kufa, T, Fielding, K, Grant, AD, Churchyard, GJ and Vassall, A (2020). The patient costs of care for those with TB and HIV: a cross-sectional study from South Africa. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001593.

Mugiyo, H, Mabhaudhi, T, Chimonyo, VGP, Dalin, C, Sibanda, M, Kunz, R, Modi, AT and Nhamo, L (2020). Multi-criteria suitability analysis for neglected and underutilised crop species in South Africa. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.13179881.v1

Muzambi, R (2020). Clinical Codelist - Heart Failure ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002044.

Muzambi, R (2020). Clinical Codelist - Hypertension ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002046.

Muzambi, R (2020). Clinical Codelist - Hypertension read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002045.

Muzambi, R (2020). Clinical Codelist - Inflammatory Bowel Disease ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002048.

Muzambi, R (2020). Clinical Codelist - Inflammatory Bowel Disease read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002047.

Muzambi, R (2020). Clinical Codelist - Multiple Sclerosis ICD-10 Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002052.

Muzambi, R (2020). Clinical Codelist - Multiple Sclerosis read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002051.

Muzambi, R (2020). Clinical Codelist - Myocardial Infarction read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002053.

Muzambi, R (2020). Clinical Codelist - Obstructive Sleep Opnoea ICD-10 Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002056.

Muzambi, R (2020). Clinical Codelist - Obstructive Sleep Opnoea read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002055.

Muzambi, R (2020). Clinical Codelist - Psoriasis ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002058.

Muzambi, R (2020). Clinical Codelist - Psoriasis read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002057.

Muzambi, R (2020). Clinical Codelist - Rhematoid Arthritis ICD-10 Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002060.

Muzambi, R (2020). Clinical Codelist - Sepsis read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002061.

Muzambi, R (2020). Clinical codelist - Asthma ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002078.

Muzambi, R (2020). Clinical codelist - Asthma read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002077.

Muzambi, R (2020). Clinical codelist - Atrial Fibrillation ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002021.

Muzambi, R (2020). Clinical codelist - Chronic Kidney Disease ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002030.

Muzambi, R (2020). Clinical codelist - Chronic Kidney Disease read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002029.

Muzambi, R (2020). Clinical codelist - Chronic Liver Disease ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002032.

Muzambi, R (2020). Clinical codelist - Chronic Liver Disease read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002031.

Muzambi, R (2020). Clinical codelist - Chronic Obstructive Pulmonary Disease ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002037.

Muzambi, R (2020). Clinical codelist - Chronic Obstructive Pulmonary Disease read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002036.

Muzambi, R (2020). Clinical codelist - Dementia ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002040.

Muzambi, R (2020). Clinical codelist - Diabetes ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002042.

Muzambi, R (2020). Clinical codelist - Diabetes read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002041.

Muzambi, R (2020). Clinical codelist - Heart Failure read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002043.

Muzambi, R (2020). Clinical codelist - Myocardial Infarction ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002054.

Muzambi, R (2020). Clinical codelist - Rheumatoid Arthritis read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002059.

Muzambi, R (2020). Clinical codelist - Stroke ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002068.

Muzambi, R (2020). Clinical codelist - Stroke read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002067.

Muzambi, R (2020). Clinical codelist - Traumatic brain injury ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002070.

Muzambi, R (2020). Clinical codelist - Traumatic brain injury read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002069.

Muzambi, R (2020). Therapy codelist - Antibiotics BNF codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002024.

Muzambi, R (2020). Therapy codelist - Benzodiazepines BNF codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002028.

Muzambi, R (2020). Therapy codelist - Proton Pump Inhibitors BNF codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002076.

Muzambi, R (2020). Therapy codelist - Systemic Corticosteroids read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002075.

Muzambi, R, Bhaskaran, K, Smeeth, L and Warren-Gash, C (2020). Clinical Codelist - Lower Respiratory Tract Infections ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002050.

Muzambi, R, Bhaskaran, K, Smeeth, L and Warren-Gash, C (2020). Clinical Codelist - Sepsis ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002062.

Muzambi, R, Bhaskaran, K, Smeeth, L and Warren-Gash, C (2020). Clinical codelist - Atrial Fibrillation read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002020.

Muzambi, R, Bhaskaran, K, Smeeth, L and Warren-Gash, C (2020). Clinical codelist - Heavy Alcohol Use read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002022.

Muzambi, R, Bhaskaran, K, Smeeth, L and Warren-Gash, C (2020). Clinical codelist - Heavy alcohol use ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002023.

Muzambi, R, Bhaskaran, K, Smeeth, L and Warren-Gash, C (2020). Clinical codelist - Skin and soft tissue infection ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002066.

Muzambi, R, Bhaskaran, K, Smeeth, L and Warren-Gash, C (2020). Clinical codelist - Skin and soft tissue infections read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002065.

Muzambi, R, Bhaskaran, K, Smeeth, L and Warren-Gash, C (2020). Clinical codelist - Urinary Tract Infections ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002072.

Muzambi, R, Bhaskaran, K, Smeeth, L and Warren-Gash, C (2020). Clinical codelist - Urinary tract infections read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002071.

Muzambi, R, Bhaskaran, K, Smeeth, L and Warren-gash, C (2020). Clinical Codelist - Lower Respiratory Tract Infections read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002049.

Muzambi, R and Warren-Gash, C (2020). Clinical codelist - Cognitive Impairment ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002034.

Muzambi, R and Warren-Gash, C (2020). Clinical codelist - Cognitive impairment incident codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002035.

Muzambi, R and Warren-Gash, C (2020). Clinical codelist - Cognitive impairment read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002033.

Mwangi, N, Bascaran, C, D'Esposito, F, Gordon, I, Mutie, D, Niyonzima, J, Khanal, S, Kwamboka, L, Mdala, S, Lopez Ulloa, JA, Ramke, J, Evans, JR and Burton, MJ (2020). Interventions to promote successful referral to eye services for people with suspected diabetic retinopathy or macula oedema in low- and middle income countries: protocol for a rapid review. [Data Collection]. Open Science Framework. https://osf.io/djzmr/

Mweemba, O, Musuku, J, Matenga, TFL, Parker, M, Rutakumwa, R, Seeley, J, Simanga, T, Tindana, P and de Vries, J (2020). Extended data for the Genomics Study in Zambia. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.12639200.v1

N

Nair, M, Kumar, P, Pandey, S, Kazmi, S, Moreto-Planas, L, Ranjan, A and Burza, S (2020). Quality of life perceptions amongst patients co-infected with Visceral Leishmaniasis and HIV: A qualitative study from Bihar, India. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0227911.s003

Naker, K (2020). Mongolia MDR-TB contact e-registry ODK 2017. [Data Collection]. Open Science Framework. https://doi.org/10.17605/OSF.IO/N925X

Nampijja, M, Lubyayi, L, Tumusiime, J, Nabulime, J, Kizindo, R, Kabuubi, P, Sanya, RE, Kabagenyi, J, Akurut, H, Muhangi, L, Webb, EL, Alcock, K, Elliott, AM and LaVIISWA Trial Team (2020). Effect of intensive versus standard anthelminthic treatment on growth and cognition among children living in a high Schistosoma mansoni transmission setting - Supporting Information. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001895.

Nash, S, Thompson, J and Leurent, B (2020). CLAN: Stata module to perform cluster-level analysis of cluster randomised trials. [Data Collection]. Statistical Software Components S458844, Boston College Department of Economics. https://ideas.repec.org/c/boc/bocode/s458844.html

Ndwiga, L, Muteru, K, Wamae, K, Osoti, V, Akinyi, M, Omedo, I, Andagalu, B, Ghansah, A, Ishengoma, D, Amambua-Ngwa, A, Raman, J, Duah-Quashie, N, Tessema, S, Karema, C, Tukwasibwe, S, Djimde, A, Dondorp, A, Snow, R, Bejon, P and Ochola-Oyier, L (2020). Replication Data for: The emergence of an indigenous artemisinin-resistant Plasmodium falciparum in Africa. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/EUPXCF

Nightingale, E, Waterlow, N, Clifford, S and Rees, E (2020). COVID-19 length of hospital stay. [Data Collection]. Github. https://github.com/esnightingale/los_review

Nkosi-Gondwe, T (2020). Moderate to severe malnutrition in severe anemia study. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.13061447.v1

Nkurunungi, G and Webb, E (2020). “Data supporting findings in: Allergen skin test reactivity and asthma are inversely associated with IgG4/IgE and total IgE/allergen-specific IgE ratios in Ugandan communities”. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001804.

Nyarko, PB, Tarr, SJ, Aniweh, Y, Stewart, LB, Conway, DJ and Awandare, GA (2020). Investigating a Plasmodium falciparum erythrocyte invasion phenotype switch at the whole transcriptome level. [Data Collection]. Scientific Reports. https://doi.org/10.1038/s41598-019-56386-y

Nyundo, C, Doyle, AM, Walumbe, D, Otiende, M, Kinuthia, M, Amadi, D, Jibendi, B, Mochamah, G, Kihuha, N, Williams, T, Ross, DA and Bauni, E (2020). Supplementary files 2 and 3 for "Linking health facility data from young adults aged 18-24 years to longitudinal demographic data: Experience from The Kilifi Health and Demographic Surveillance System". [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.11880657.v2

O

Ojal, J, Brand, SPC, Were, V, Okiro, EA, Kombe, IK, Mburu, C, Aziza, R, Ogero, M, Agweyu, A, Warimwe, GM, Uyoga, S, Adetifa, IM, Scott, JAG, Otieno, E, Ochola-Oyier, LI, Agoti, CN, Kasera, K, Amoth, P, Mwangangi, M, Aman, R, Ng’ang’a, W, Tsofa, B, Bejon, P, Barasa, E, Keeling, MJ and Nokes, DJ (2020). Replication Data for: Revealing the extent of the COVID-19 pandemic in Kenya based on serological and PCR-test data. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/RXAIPS

Olaru, ID (2020). Evaluation of the InTray and Compact Dry culture systems for the diagnosis of urinary tract infections - ARGUS study dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001997.

Oliveira, JFd, Pescarini, JM, Rodrigues, MdS, Almeida, BdA, Henriques, CMP, Gouveia, FC, Rabello, ET, Matta, GC, Barreto, ML and Sampaio, RB (2020). The global scientific research response to the public health emergency of Zika virus infection. S1 Data. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0229790.s005

Omondi, BR, Muthui, MK, Muasya, WI, Orindi, B, Mwakubambanya, RS, Bousema, T, Drakeley, C, Marsh, K, Bejon, P and Kapulu, MC (2020). Replication Data for: Antibody responses to crude gametocyte extract predicts P. falciparum gametocyte carriage in Kenya. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/UZWG9J

Osborn, J, Roberts, T, Guillen, E, Bernal, O, Roddy, P, Ongarello, S, Sprecher, A, Page, A, Ribeiro, I, Piriou, E, Tamrat, A, de la Tour, R, Rao, VB, Flevaud, L, Jensen, T, McIver, L, Kelly, C and Dittrich, S (2020). Additional file 1 of Prioritising pathogens for the management of severe febrile patients to improve clinical care in low- and middle-income countries. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.11835159.v1

Osterrieder, A, Poomchaichote, T, Cuman, G, Pan-ngum, W, Cheah, P, Waithira, N, Mukaka, M, Naemiratch, B, Kulpijit, N, Chanviriyavuth, R, Asarath, S, Ruangkajorn, S, Silan, M, Stoppa, S, Zuanna, GD, Cheah, PK, Ongkili, D, Schneiders, M, Mackworth-Young, CR and Cheah, PY (2020). Online survey questions: Social, ethical and behavioural aspects of COVID-19. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3764912

Oswald, WE, Kennedy, DS, Farzana, J, Kaliappan, SP, Atindegla, E, Houngbégnon, P, Chisambi, A, Witek-mcmanus, S, Galagan, SR, Emmanuel-Fabula, M, Gwayi-Chore, M, Legge, H, Yard, E, Kalua, K, Ibikounlé, M, Ajjampur, SSR, Means, AR, Ásbjörnsdóttir, KH, Halliday, KE and Walson, JL (2020). deworm3 Electronic Treatment Register. [Data Collection]. Github. https://github.com/williameoswald/deworm3_etr

Otieno, GP, Murunga, N, Agoti, CN, Gallagher, KE, Awori, JO and Nokes, DJ (2020). Replication Data for: Surveillance of endemic human coronaviruses (HCoV-NL63, OC43 and 229E) associated with pneumonia in Kilifi, Kenya. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/ZQ1DJY

Owoeye, J (2020). Rapid Assessment of Avoidable Blindness Dataset: Nigeria, Kogi (2020). [Data Collection]. London School of Hygiene & Tropical Medicine RAAB Repository. https://doi.org/10.17037/RAABDATASET.00000380.

P

Page, AE, Emmott, EH and Myers, S (2020). Testing the buffering hypothesis: breastfeeding problems, cessation and social support. [Data Collection]. OSF. https://doi.org/10.17605/OSF.IO/74ERF

Paradis, E, Kamvar, ZN, Jombart, T, Brian, K and Frederic, M (2020). pegas: Population and Evolutionary Genetics Analysis System. [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.3647668

Parker, E (2020). Covid 2019 tracker. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://vac-lshtm.shinyapps.io/ncov_tracker/

Pearson, CAB, Van zandvoort, K, Jarvis, CI, Davies, NG, Thompson, S, Checchi, F, Jit, M, Eggo, RM and LSHTM CMMID COVID-19 Working Group (2020). Projections of COVID-19 epidemics in LMIC countries. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001564.

Peppa, M, Thomas, S, Kempley, S and Mangtani, P (2020). Clinical codelist - Congenital malformation codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001623.

Peppa, M, Thomas, S, Kempley, S and Mangtani, P (2020). Codelists for: "Identifying major congenital malformations in anonymised UK electronic health records: the value of primary care, hospital admissions and mortality data". [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001630.

Peppa, M, Thomas, S, Kempley, S and Mangtani, P (2020). HES diagnosis codelist - Congenital malformation codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001624.

Peppa, M, Thomas, S, Kempley, S and Mangtani, P (2020). HES procedures codelist - Congenital malformation codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001625.

Peppa, M, Thomas, S, Kempley, S, Mangtani, P and Walker, J (2020). Codelists for: "Seasonal influenza vaccination during pregnancy and the risk of major congenital malformations in live-born infants: A 2010-2016 historical cohort study". [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001629.

Phelan, J and Deelder, W (2020). COVID-Profiler. [Data Collection]. Github. https://github.com/jodyphelan/covid-profiler

Pocock, NS and Kiss, L (2020). Results from a before-and-after learning assessment of pre-migration departure training for prospective female migrants in Odisha, India. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001789.

Poomchaichote, T, Naemiratch, B, Schneiders, M, Kulpijit, N, Cuman, G, Pan-ngum, W, Cheah, P, Waithira, N, Mukaka, M, Chanviriyavuth, R, Asarath, S, Ruangkajorn, S, Silan, M, Stoppa, S, Zuanna, GD, Ongkili, D, Cheah, PK, Osterrieder, A, Mackworth-young, K and Cheah, PY (2020). Topic guide for qualitative study: Social, ethical and behavioural aspects of COVID-19. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3777933

Prem, K, Liu, Y, Russell, TW, Kucharski, AJ, Eggo, RM, Davies, NG, Jit, M, Klepac, P, Flasche, S, Clifford, S, Pearson, CAB, Munday, JD, Abbott, S, Gibbs, H, Rosello, A, Quilty, BJ, Jombart, T, Sun, F, Diamond, C, Gimma, A, Van zandvoort, K, Funk, S, Jarvis, CI, Edmunds, WJ, Bosse, NI and Hellewell, J (2020). Age-structured SEIR model for COVID-19 outbreak in Wuhan, China. [Data Collection]. Github. https://github.com/kieshaprem/covid19-agestructureSEIR-wuhan-social-distancing

Prinja, S, Brar, S, Singh, MP, Rajsekhar, K, Sachin, O, Naik, J, Singh, M, Tomar, H, Bahuguna, P and Guinness, L (2020). Online survey data for "Process evaluation of health system costing – Experience from CHSI study in India". [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0232873.s002

Q

Quaife, M (2020). mquaife/kenya_mixing. [Data Collection]. Github. https://github.com/mquaife/kenya_mixing

Quint, J (2020). Clinical codelist - Cough (used to help detect COPD exacerbations). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001649.

Quint, J (2020). Clinical codelist - acute COPD exacerbation (used to help detect COPD exacerbations). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001653.

Quint, JK (2020). Clinical codelist - Asthma codes (exclusion criteria). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001642.

Quint, JK (2020). Clinical codelist - Breathlessness (used to help detect COPD exacerbations). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001651.

Quint, JK (2020). Clinical codelist - LRTI (used to help detect COPD exacerbations). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001652.

Quint, JK (2020). Clinical codelist - Sputum (used to help detect COPD exacerbations). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001650.

Quint, JK (2020). Therapy codelist - Long-acting beta agonists. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001632.

Quint, JK (2020). Therapy codelist - Oral Corticosteroid codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001641.

Quint, JK (2020). Therapy codelist - inhaled Corticosteroid codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001640.

Quint, JK (2020). Therapy codelist - long-acting muscarinic antagonist codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001639.

Quint, JK and Mcdonald, H (2020). Clinical codelist - Pneumonia detection. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001654.

Quint, JK and Wing, K (2020). Therapy codelist - Antibiotic therapy for respiratory infections (used to help detect COPD exacerbations). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001648.

Quint, JK, Wing, K and Mcdonald, H (2020). Codelists for: "Real world effects of medications COPD: a UK population-based non-interventional cohort study of LABA-ICS treatment effects with validation against randomised trial results". [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001655.

Quintero, J, Ronderos Pulido, N, Logan, J, Ant, T, Bruce, J and Carrasquilla, G (2020). Effectiveness of an intervention for Aedes aegypti control scaled-up under an inter-sectoral approach in a Colombian city hyper-endemic for dengue virus. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0230486

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Rahman, SIA, Dyson, ZA, Klemm, EJ, Khanam, F, Holt, KE, Chowdhury, EK, Dougan, G and Qadri, F (2020). Population structure and antimicrobial resistance patterns of Salmonella Typhi isolates in urban Dhaka, Bangladesh from 2004 to 2016. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0008036

Ratnayake, R (2020). ruwanepi/Detection-analysis. [Data Collection]. Github. https://github.com/ruwanepi/Detection-analysis

Rees, EM, Nightingale, ES, Jafari, Y, Waterlow, NR, Clifford, S, B. Pearson, CA, CMMID Working Group, Jombart, T, Procter, SR and Knight, GM (2020). Additional file 2 of COVID-19 length of hospital stay: a systematic review and data synthesis. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.12910557.v1

Riffe, T and Aburto, JM (2020). timriffe/MacroShape. [Data Collection]. Github. https://github.com/timriffe/MacroShape

Rijlaarsdam, J, Cecil, CA, Relton, CL and Barker, ED (2020). Epigenetic Profiling of Social Communication Trajectories and Co-occurring Mental Health Problems: A Prospective, Methylome-wide Association Study. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4031356

Robert, A (2020). geosocial-outbreaker: Integrating geographical and social contact data to reconstruct transmission chains. [Data Collection]. Github. https://github.com/alxsrobert/o2geosocial

Robert, A, Funk, S and Kucharski, AJ (2020). o2geosocial. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4317439

Roberts, C (2020). Female Reproductive System. [Data Collection]. Thingiverse. https://www.thingiverse.com/thing:4149401

Roberts, C (2020). Microscope Smartphone Adapter (Customisable). [Data Collection]. Thingiverse. https://www.thingiverse.com/thing:4145621

Roberts, C and LSHTM Global Health Analytics Group (2020). LSHTM-ORK/EDK_Automation_Tools. [Data Collection]. Github. https://github.com/LSHTM-ORK/EDK_Automation_Tools

Roberts, C and LSHTM Global Health Analytics Group (2020). LSHTM-ORK/OpenMakingKit. [Data Collection]. Github. https://github.com/LSHTM-ORK/OpenMakingKit/

Russell, TW, Golding, N, Hellewell, J, Abbott, S, Pearson, CAB, Van zandvoort, K, Jarvis, CI, Gibbs, H, Liu, Y, Eggo, RM, Edmunds, WJ, Kucharski, AJ and CMMID COVID-19 working group (2020). Reconstructing the global dynamics of unreported COVID-19 cases and infections. [Data Collection]. Github. https://github.com/thimotei/covid_underreporting

Russell, TW, Hellewell, J, Abbott, S, Jarvis, C, Zandvoort, Kv, Ratnayake, R, CMMID nCov working group, Flasche, S, Eggo, RM, Edmunds, WJ and Kucharski, AJ (2020). thimotei/CFR_calculation. [Data Collection]. Github. https://github.com/thimotei/CFR_calculation

Russell, TW, Hellewell, J, Jarvis, CI, Van-Zandvoort, K, Abbott, S, Ratnayake, R, Flasche, S, Eggo, RM and Kucharski, AJ (2020). Estimating the infection and case fatality ratio for COVID-19 using age-adjusted data from the outbreak on the Diamond Princess cruise ship. [Data Collection]. Github. https://github.com/thimotei/cCFRDiamondPrincess

Russell, TW, Wu, JT, Clifford, S, CMMID COVID-19 working group, Edmunds, WJ, Kucharski, AJ and Jit, M (2020). thimotei/covid_travel_restrictions. [Data Collection]. Github. https://github.com/thimotei/covid_travel_restrictions

S

Scheelbeek, P (2020). Extended Data - UK’s fruit and vegetable supply increasingly dependent on imports from climate-vulnerable producing countries. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001852.

Schmidt, SAJ, Langan, S and Wong, A (2020). Clinical Code List - Alopecia areata - Read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001539.

Schmidt, SAJ, Langan, S and Wong, A (2020). Clinical code list - Alopecia areata - ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001538.

Schmidt, SAJ, Langan, S and Wong, A (2020). Clinical code list - Urticaria - ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001541.

Schmidt, SAJ, Langan, S and Wong, A (2020). Clinical code list - Urticaria - Read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001540.

Schmidt, SAJ, Langan, S and Wong, A (2020). Clinical code list - Vitiligo - ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001542.

Schmidt, SAJ, Langan, S and Wong, A (2020). Clinical code list - Vitiligo - Read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001543.

Schmidt, SAJ, Langan, S and Wong, A (2020). Clinical code lists for: "Partner bereavement and risk of chronic urticaria, alopecia areata and vitiligo: cohort studies in the United Kingdom and Denmark". [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/data.00001544.

Scortichini, M, Schneider dos santos, R, De' Donato, De Sario, M, Michelozzi, P, Davoli, M, Masselot, P, Sera, F and Gasparrini, A (2020). gasparrini/ItalyCOVIDdeath. [Data Collection]. Github. https://github.com/gasparrini/ItalyCOVIDdeath

Shaver, J, Power, EA, Purzycki, BG, Shenk, MK, Bulbulia, JA, Sear, R, Sosis, R and Watts, J (2020). Religion, Cooperation, Fertility, and Child Outcomes. [Data Collection]. OSF. https://osf.io/4mt9y/

Sherratt, K (2020). epiforecasts/rt-comparison-uk-public: v1.0.0. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4029074

Silverwood, RJ, Mansfield, KE, Mulick, A, Wong, AYS, Schmidt, SAJ, Roberts, A, Smeeth, L, Abuabara, K and Langan, SM (2020). Clinical Codelist - Asthma diagnostic Read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001978.

Silverwood, RJ, Mansfield, KE, Mulick, A, Wong, AYS, Schmidt, SAJ, Roberts, A, Smeeth, L, Abuabara, K and Langan, SM (2020). Clinical Codelist - Diabetes mellitus diagnostic ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001975.

Silverwood, RJ, Mansfield, KE, Mulick, A, Wong, AYS, Schmidt, SAJ, Roberts, A, Smeeth, L, Abuabara, K and Langan, SM (2020). Clinical Codelist - OPCS codes for phototherapy. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001977.

Silverwood, RJ, Mansfield, KE, Mulick, A, Wong, AYS, Schmidt, SAJ, Roberts, A, Smeeth, L, Abuabara, K and Langan, SM (2020). Clinical Codelist - Smoking Read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001985.

Silverwood, RJ, Mansfield, KE, Mulick, A, Wong, AYS, Schmidt, SAJ, Roberts, A, Smeeth, L, Abuabara, K and Langan, SM (2020). Clinical codelists for: "Atopic eczema in adulthood and mortality: UK population-based cohort study, 1998–2016". [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001986.

Silverwood, RJ, Mansfield, KE, Mulick, A, Wong, AYS, Schmidt, SAJ, Roberts, A, Smeeth, L, Abuabara, K and Langan, SM (2020). Clinical Codelist - Read codes indicating harmful alcohol drinking. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001984.

Silverwood, RJ, Mansfield, KE, Mulick, A, Wong, AYS, Schmidt, SAJ, Roberts, A, Smeeth, L, Abuabara, K and Langan, S (2020). Clinical Codelist - Asthma diagnostic ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001974.

Silverwood, RJ, Mansfield, KE, Mulick, A, Wong, AYS, Schmidt, SAJ, Roberts, A, Smeeth, L, Abuabara, K and Langan, SM (2020). Clinical Codelist - Atopic eczema diagnostic ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001976.

Silverwood, RJ, Mansfield, KE, Mulick, A, Wong, AYS, Schmidt, SAJ, Roberts, A, Smeeth, L, Abuabara, K and Langan, SM (2020). Clinical Codelist - Atopic eczema therapy Read codes (phototherapy). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001983.

Silverwood, RJ, Mansfield, KE, Mulick, A, Wong, AYS, Schmidt, SA, Roberts, A, Smeeth, L, Abuabara, K and Langan, SM (2020). Clinical Codelist - Atopic eczema diagnostic Read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001982.

Silverwood, RJ, Mansfield, KE, Mulick, A, Wong, AY, Schmidt, SA, Roberts, A, Smeeth, L, Abuabara, K and Langan, SM (2020). Clinical Codelist - Diabetes mellitus diagnostic Read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001981.

Simons, D, Shahab, L, Brown, J and Perski, O (2020). The association of smoking status with SARS-CoV-2 infection, hospitalisation and mortality from COVID-19: A living rapid evidence review and Bayesian meta-analyses (version 9) - Data. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.12756020.v4

Simpson, H, Deribe, K, Tabah, EN, Maman, I, Frimpong, M, Ampadu, E, Saunderson, P, Pullan, RL and Cano, J (2020). Occurrences of Buruli ulcer infections in humans and Mycobacterium ulcerans in animal and environmental samples. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001909.

Simpson, KMJ, Mor, SM, Ward, MP, Collins, J, Flint, J, Hill-Cawthorne, GA and El Ghany, MA (2020). Dataset for "Genomic characterisation of Salmonella enterica serovar Wangata isolates obtained from different sources reveals low genomic diversity". [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0229697.s002

Smit, N (2020). Data for "The Health of Fashion Models Working in London: A Qualitative Study". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001969.

Smythe, T, Nogaro, M, Clifton, LJ, Mudariki, D, Theologis, T and Lavy, C (2020). ACT and photograph scores dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001563.

Srilohasin, P, Prammananan, T, Faksri, K, Phelan, JE, Suriyaphol, P, Kamolwat, P, Smithtikarn, S, Disratthakit, A, Regmi, SM, Leechawengwongs, M, Twee-Hee Ong, R, Teo, YY, Tongsima, S, Clark, TG and Chaiprasert, A (2020). Genomic evidence supporting the clonal expansion of extensively drug-resistant tuberculosis bacteria belonging to a rare proto-Beijing genotype. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.13378598.v1

Ssali, A, Namugumya, R, Nalubega, P, Kyohere, M, Seeley, J and Le Doare, K (2020). Exploring the consent process among pregnant and breastfeeding women taking part in a maternal vaccine clinical trial in Kampala, Uganda: a qualitative study. [Data Collection]. Figshare.

Ssemata, AS, Opoka, RO, Ssenkusu, JM, Nakasujja, N, John, CC and Bangirana, P (2020). Final Z scores by regression for neurodevelopmental outcomes data. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0240694.s001

Staedke, SG, Donnelly, M, Hemingway, J, Kamya, M and Dorsey, G (2020). Dataset: LLINEUP Cluster Randomized Trial. [Data Collection]. ClinEpiDB. https://clinepidb.org/ce/app/workspace/analyses/DS_7c4cd6bba9/new

Strongman, H and Bathe, K (2020). Clinical code list - Incompletely specified Cancer read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001545.

Strongman, H, Bathe, K and Bhaskaran, K (2020). Clinical code lists for: "Benefits and limitations of using individual and different combinations of linked English routine data sources in cancer epidemiology studies". [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Stubbs, S (2020). Crimean-congo haemorrhagic fever virus detected in Rhipicephalus ticks feeding on cattle in an abattoir, Uganda. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4282998

Sturt, A, Bustinduy, A and Phiri, C (2020). BILHIV acceptability dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001618.

Sturt, A, Webb, E and Bustinduy, A (2020). BILHIV Genital Self-Sampling Dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001777.

Sumner, T (2020). tomsumner/Latency_Model_Comparison_Public. [Data Collection]. Github. https://github.com/tomsumner/Latency_Model_Comparison_Public

Sun, H, Dickens, BL, Jit, M, Cook, AR and Carrasco, LR (2020). Mapping the cryptic spread of the 2015–2016 global Zika virus epidemic. [Data Collection]. BMC Medicine. https://doi.org/10.1186/s12916-020-01845-x

Sutherland, C and Henrici, R (2020). The Plasmodium falciparum artemisinin susceptibility-associated AP-2 adaptin mu subunit is clathrin-independent and essential for schizont-maturation v2.0. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001533.

Sweeney, S and Kitson, N (2020). Cost-effectiveness of new MDR-TB Regimens: TB-Practecal economic evaluation sub-study. [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001797.

Sweeney, S and Kitson, N (2020). TB-Practecal economic evaluation sub-study: Data collection tools. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001799.

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Tazare, J (2020). johntaz/COVID-Collateral. [Data Collection]. Github. https://github.com/johntaz/COVID-Collateral

Tetteh, KKA (2020). Optimisation and standardisation of a multiplex immunoassay of diverse Plasmodium falciparum antigens to assess sero-epidemiological changes in malaria transmission. [Data Collection]. OSF. https://doi.org/10.17605/OSF.IO/AUJ35

Thindwa, D, Oxford Vaccine Group and Mujadidi, YF (2020). deusthindwa/Electronic-Data-Capture-for-Large-Scale-Typhoid-Surveillance---STRATAA: edc. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3736224

Thomas, S (2020). COVID-19 risk group - Neurological disease codelist. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001704.

Thomas, S (2020). Code lists for: "Social determinants of pertussis and influenza vaccine uptake in pregnancy: a national cohort study using electronic health records". [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001907

Thomas, S (2020). Influenza clinical risk groups 2017 version - Asthma. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001897.

Thomas, S (2020). Influenza clinical risk groups 2017 version - Chronic cardiac conditions. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001903.

Thomas, S (2020). Influenza clinical risk groups 2017 version - Chronic renal disease diagnoses. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001904.

Thomas, S (2020). Influenza clinical risk groups 2017 version - Chronic respiratory disease (not asthma). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001902.

Thomas, S (2020). Influenza clinical risk groups 2017 version - Diabetes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001905.

Thomas, S (2020). Influenza risk groups 2017 version - Chronic liver disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/data.00001906.

Thomas, S, Peppa, M and Walker, J (2020). Clinical codelist - Influenza vaccination codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001626.

Thomas, S, Peppa, M and Walker, J (2020). Immunisation codelist - Influenza vaccination codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001627.

Thomas, S, Peppa, M and Walker, J (2020). Therapy codelist - Influenza vaccination codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001628.

Thompson, J (2020). Comparison of small-sample standard-error corrections for generalised estimating equations in stepped wedge cluster randomised trials with a binary outcome: A simulation study. [Data Collection]. Zenodo. https://zenodo.org/10.5281/zenodo.4049828

Tola, M, Ajibola, O, Idowu, ET, Omidiji, O, Awolola, ST and Amambua-Ngwa, A (2020). Additional file 2 of Molecular detection of drug resistant polymorphisms in Plasmodium falciparum isolates from Southwest, Nigeria. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.13152246.v1

Tomkins, J, Hazel, W, Black, R, Smock, R and Sear, R (2020). An age-dependent ovulatory strategy explains the evolution of dizygotic twinning in humans. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.h70rxwdfw

Tomlinson, LA, Iwagami, M, Bidulka, P and Wong, AY (2020). Supplementary data for “Comparisons of Staphylococcus aureus infection and other outcomes between users of angiotensin-converting-enzyme inhibitors and angiotensin II receptor blockers: lessons for COVID-19 from a nationwide cohort study”. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/PUBS.04656578.

Tsang, KK (2020). karatsang/rulesbased_logisticregression. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3988479

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Van de wijgert, JH, Verwijs, MC, Gill, AC, Borgdorff, H, van der Veer, C and Mayaud, P (2020). Pathobionts in the Vaginal Microbiota: Individual Participant Data Meta-Analysis of Three Sequencing Studies. [Data Collection]. Frontiers in Cellular and Infection Microbiology. https://doi.org/10.3389/fcimb.2020.00129

Vashist, P, Tandon, R, Murthy, G, Barua, CK, Deka, D, Singh, S, Gupta, V, Gupta, N, Wadhwani, M, Singh, R and Vishwanath, K (2020). Association of cataract and sun exposure in geographically diverse populations of India: The CASE study. First Report of the ICMR-EYE SEE Study Group. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0227868.s002

Vashist, P, Tandon, R, Murthy, G, Barua, C, Deka, D, Singh, S, Gupta, V, Gupta, N, Wadhwani, M, Singh, R and Vishwanath, K (2020). Association of cataract and sun exposure in geographically diverse populations of India: the case study. first report of the ICMR-EYE SEE study group. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.5qfttdz19

Vazquez-Montes, Maria D. L. A., Debray, TPA, Taylor, KS, Speich, B, Jones, N, Collins, GS, Hobbs, F. D. R. Richard, Magriplis, E, Maruri-Aguilar, H, Moons, KGM, Parissis, J, Perera, R, Roberts, N, Taylor, CJ, Kadoglou, NPE and Trivella, M (2020). Additional file 1 of UMBRELLA protocol: systematic reviews of multivariable biomarker prognostic models developed to predict clinical outcomes in patients with heart failure. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.12864833.v1

van der Laan, LC, Meeks, KAC, Chilunga, FP, Agyemang, C, Venema, A, Mannens, Marcel M. A. M., Zafarmand, MH, Klipstein-Grobusch, K, Smeeth, L, Adeyemo, A and Henneman, P (2020). Epigenome-wide association study for perceived discrimination among sub-Saharan African migrants in Europe - the RODAM study. [Data Collection]. Scientific Reports. h.

von Wissmann, B, Gadama, L, Dube, Q, Membe-Gadama, G, Stock, S, Chodzaza, E, Masesa, C, Crampin, AC and Wood, R (2020). The DIPLOMATIC Collaboration, Work Package2_Coredata Set. [Data Collection]. OSF. https://osf.io/d3s7j/

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WOMAN trial collaborative group (2020). The WOMAN (World Maternal Antifibrinolytic) Trial Dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001811.

Walker, J, Grint, D, Strongman, H, Eggo, RM, Peppa, M, Minassian, C, Mansfield, KE, Rentsch, C, Douglas, IJ, Mathur, R, Wong, A, Quint, JK, Andrews, N, Lopez-bernal, J, Scott, A, Ramsay, M, Smeeth, L and McDonald, H (2020). UK prevalence of risk factors for severe COVID-19 disease, by age and region: point prevalence estimates in 2019 and 2014, using electronic health records. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001833.

Walker, S, Collinson, S, Timothy, J, Zayzay, SK, Kollie, KK, Candy, N, Lebas, E, Halliday, K, Pullan, RL, Fallah, M and Marks, M (2020). A community-based validation of the International Alliance for the Control of Scabies Consensus Criteria by expert and non-expert examiners in Liberia. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0008717

Walker, T, Jeffries, CL, Yakob, L, White, M and Wilson, L (2020). Detection of a novel insect-specific flavivirus across ecologically diverse populations of Aedes aegypti on the Caribbean Island of Saint Lucia. [Data Collection]. Open Science Framework. https://doi.org/10.17605/OSF.IO/8UYB7

Warren-Gash, C and Muzambi, R (2020). Clinical codelist - Dementia read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002038.

Warren-Gash, C and Muzambi, R (2020). Clinical codelist - Incident Dementia read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002039.

Webb, E and Nampijja, M (2020). LaVIISWA Round 1 and 2 Dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001802.

Willem, L, Hoang, VT, Funk, S, Coletti, P, Beutels, P and Hens, N (2020). Social Contact Rates (SOCRATES) Data Tool. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3706787

Willem, L, Xiao, L, Antillon, M, Bilcke, J, Jit, M and Beutels, P (2020). Multi-Country Model Application for RSV Cost-Effectiveness Policy (McMarcel). [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.3663447

Williamson, E, Walker, AJ, Bhaskaran, KJ, Bacon, S, Bates, C, Morton, CE, Curtis, HJ, Mehrkar, A, Evans, D, Inglesby, P, Cockburn, J, Mcdonald, HI, MacKenna, B, Tomlinson, L, Douglas, IJ, Rentsch, CT, Mathur, R, Wong, A, Grieve, R, Harrison, D, Forbes, H, Schultze, A, Croker, RT, Parry, J, Hester, F, Harper, S, Perera, R, Evans, S, Smeeth, L and Goldacre, B (2020). opensafely/risk-factors-research. [Data Collection]. Github. https://github.com/ebmdatalab/opensafely-risk-factors-research

Wing, K and Quint, JK (2020). Clinical codelist - Alcohol or substance abuse (exclusion criteria). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001645.

Wing, K and Quint, JK (2020). Clinical codelist - Conditions likely to interfere with ability of person to take part in an RCT (exclusion criteria). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001647.

Wing, K and Quint, JK (2020). Clinical codelist - lung/respiratory conditions other than COPD (exclusion criteria). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001643.

Wing, K and Quint, JK (2020). Clinical codelist- Oxygen therapy (exclusion criteria). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001646.

Wing, K and Quint, JK (2020). Therapy codelist - Oxygen therapy (exclusion criteria). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001644.

Wu, L, Mwesigwa, J, Affara, M, Bah, M, Correa, S, Hall, T, Singh, SK, Beeson, JG, Tetteh, K, Kleinschmidt, I, D'Alessandro, U and Drakeley, C (2020). Additional file 2 of Sero-epidemiological evaluation of malaria transmission in The Gambia before and after mass drug administration. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.13233151.v1

Wyres, KL, Nguyen, TNT, Lam, MMC, Judd, LM, van Vinh Chau, N, Dance, DAB, Ip, M, Karkey, A, Ling, CL, Miliya, T, Newton, PN, Lan, NPH, Sengduangphachanh, A, Turner, P, Veeraraghavan, B, Vinh, PV, Vongsouvath, M, Thomson, NR, Baker, S and Holt, KE (2020). Data for, "Genomic surveillance for hypervirulence and multi-drug resistance in invasive Klebsiella pneumoniae from south and southeast Asia.". [Data Collection]. Monash University. https://doi.org/10.26180/5c67982956721

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Xu, Y, Stockdale, JE, Naidu, V, Hatherell, H, Stimson, J, Stagg, HR, Abubakar, I and Colijn, C (2020). Transmission analysis of a large TB outbreak in London: a mathematical modelling study using genomic data. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.12413012.v1

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Yakob, L and Nightingale, E (2020). lwyakob/COVIDsaturates. [Data Collection]. Github. https://github.com/lwyakob/COVIDsaturates

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Zameer, M, Phillips-White, N, Folorunso, O, Belt, R, Setayesh, H, Asghar, N and Chandio, A (2020). Immunization supply chain equity metrics for Pakistan. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.12032106.v1

Zangana, A, Shabila, N, Heath, T and White, S (2020). Barrier Analysis Questionnaire: Hand washing among mothers. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0231694.s001