Items where completion year is 2020

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Number of items: 171.

A

Abaasa, A and Bahemuka, U (2020). Uganda Police Force - HIV vaccine preparedness dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001579.

Abbas, KM, Van Zandvoort, K, Brisson, M and Jit, M (2020). Effects of updated demography, disability weights, and cervical cancer burden on estimates of human papillomavirus vaccination impact at the global, regional, and national levels: a PRIME modelling study. [Data Collection]. The Lancet Global Health. https://doi.org/10.1016/S2214-109X(20)30022-X

Abbott, S, Funk, S, Munday, JD and Hellewell, J (2020). Pathways to Low Fertility. [Data Collection]. Zenodo, London, United Kingdom. http://doi.org/10.5281/zenodo.3627833

Abbott, S, Funk, S, Munday, JD and Hellewell, J (2020). Wuhan Seeding Vs Transmission. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3630424

Abbott, S, Funk, S, Munday, JD and Hellewell, J (2020). epiforecasts/WuhanSeedingVsTransmission: Resubmission to Wellcome Open Research. [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.3631830

Abbott, S, Gaythorpe, KA, Imai, N and Liu, Y (2020). seabbs/CovidInterventionReview: CC0 license. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3728162

Abbott, S, Hellewell, J, Funk, S and Clifford, S (2020). epiforecasts/EpiNow: Forecasting. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3746392

Abbott, S, Sherratt, K, Funk, S and Hellewell, J (2020). epiforecasts/covid: Submission release. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3746396

Abramsky, T and Harvey, S (2020). MAISHA Cluster Randomised Trial - Couples Survey Data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001773.

Abramsky, T and Harvey, S (2020). MAISHA Cluster Randomised Trial - Primary Analysis Dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001775.

Abuga, KM, Rockett, KA, Muriuki, JM, Koch, O, Nairz, M, Sirugo, G, Bejon, P, Kwiatkowski, DP, Prentice, AM and Atkinson, SH (2020). Replication Data for: Interferon-gamma polymorphisms and risk of iron deficiency and anaemia in Gambian children. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/2NKJID

Aldridge, RW, Lewer, D, Beale, S, Johnson, AM, Zambon, M, Hayward, AC and Fragaszy, E (2020). Dataset: Seasonality and immunity to laboratory-confirmed seasonal coronaviruses (HCoV-NL63, HCoV-OC43, and HCoV-229E): results from the Flu Watch cohort study. [Data Collection]. UCL Institute of Health Informatics, London, United Kingdom. https://doi.org/10.14324/000.ds.10093909

Alwy Al-beity, F, Pembe, AB, Marrone, G, Baker, U and Hanson, C (2020). Anonymised data for: "Predictors of change of health workers’ knowledge and skills after the Helping Mothers Survive Bleeding after Birth (HMS BAB) in-facility training in Tanzania". [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0232983.s006

Asio, J, Watera, C, Namuwenge, N, Kirungi, W, Musinguzi, J, Mugagga, K, Busobozi, R, Tusiime, BJ, Lutalo, T, Mbidde, EK and Kaleebu, P (2020). Population-based monitoring of HIV drug resistance early warning indicators in Uganda: A nationally representative survey following revised WHO recommendations: S1 Data. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0230451.s001

B

Banks, M, Hameed, S and Kuper, H (2020). Impact of the Disability Allowance in the Maldives - Baseline Dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001698.

Bhaskaran, K (2020). Clinical code list - all Cancer read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001546.

C

Cairns, M, Thera, I, Dicko, A, Ouedraogo, J, Chandramohan, D and Greenwood, B (2020). Data for AZ-SMC - a trial of seasonal malaria chemoprevention combined with azithromycin in African children. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001752.

Cansado-Utrilla, C, Jeffries, CL, Kristan, M, Brugman, VA, Heard, P, Camara, G, Sylla, M, Beavogui, AH, Messenger, LA, Irish, SR and Walker, T (2020). An assessment of adult mosquito collection techniques for studying species abundance and diversity in Maferinyah, Guinea. [Data Collection]. Open Science Framework. https://osf.io/pfma3/

Carreira, H (2020). Clinical Codelist - Product codes for pneumococcal vaccination. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001806.

Carreira, H (2020). Clinical Codelist - Read codes for pneumococcal vaccination. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001805.

Carreira, H (2020). Clinical codelist - Immunisation codes for pneumococcal vaccination. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001807.

Carvalho, MS, Freitas, LP, Cruz, OG, Brasil, P and Bastos, LS (2020). Dengue and microcephaly cases in Brazil used in Carvalho et al. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3489427

Chase, R, Kerac, M, Grant, A, Manary, M, Briend, A, Opondo, C and Bailey, J (2020). Combined Protocol for Acute Malnutrition (ComPAS) Stage 1 dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001572.

Clifford, S, Quilty, B, CMMID nCoV working group, Pearson, C, Flasche, S and Eggo, RM (2020). Effectiveness of airport-based interventions at detecting travellers and delaying an outbreak of COVID-19 (formerly 2019-nCoV). [Data Collection]. Github. https://github.com/cmmid/screening_outbreak_delay

Cox, SE, White, LV, Faguer, B, Edwards, T, Lee, N, Solon, J, Ariyoshi, K, Castro, MC, Saludar, NR, Saito, N and Calapis, RW (2020). Co-morbidities (malnutrition, diabetes, anaemia, HIV, hypertension) and quality of life in persons with tuberculosis in the Philippines. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.11695467.v1

D

Davies, NG, Kucharski, AJ, Eggo, RM, Gimma, A, COVID-19 Working Group and Edmunds, WJ (2020). Stochastic age-structured model of SARS-nCoV-2 transmission for UK scenario projections. [Data Collection]. Github. https://github.com/cmmid/covid-uk

Dingle, A, Schaeferhoff, M, Borghi, J, Lewis Sabin, M, Arregoces, L, Martinez-alvarez, M and Pitt, C (2020). Aid for reproductive, maternal, newborn and child health: data and analysis from application of the Muskoka2 method, 2002-2017. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001526.

E

Endo, A, Abbott, S, Kucharski, AJ and Funk, S (2020). Extended data: Estimating the overdispersion in COVID-19 transmission using outbreak sizes outside China. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3740348

Endo, A, Abbott, S, Kucharski, AJ and Funk, S (2020). akira-endo/COVID19_clustersize: Estimating the amount of superspreading using outbreak sizes of COVID-19 outside China. [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.3741744

F

Fabian, ID, Stacey, A, Foster, A, Kivelä, TT, Munier, F, Cassoux, N and Bowman, R (2020). Global Retinoblastoma Presentation 2017 data, on behalf of the Global Retinoblastoma Study Group. [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.3727687

Falconer, J (2020). Search strategies for: How can e-health interventions reduce the ‘syndemic’ of HIV/STIs and sexual risk, substance use and mental ill health among men who have sex with men? [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001751.

Flasche, S (2020). StefanFlasche/Pneumo_Trans_Inf. [Data Collection]. Github. https://github.com/StefanFlasche/Pneumo_Trans_Inf

Forbes, H (2020). Clinical Code List - Immunosuppression Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001584.

Forbes, H (2020). Clinical Code List - Moderate Immunosuppression ICD-10 Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001586.

Forbes, H (2020). Clinical Code List - Moderate Immunosuppression OPCS Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001587.

Forbes, H (2020). Clinical Code List - Moderate Immunosuppression Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001585.

Forbes, H (2020). Clinical Code List - Smoking Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001602.

Forbes, H (2020). Clinical Code List - Zoster Comorbidity Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001600.

Forbes, H (2020). Clinical Code List - Zoster Comorbidity Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001601.

Forbes, H (2020). Clinical Code List - Zoster Complication ICD-10 Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001598.

Forbes, H (2020). Clinical Code List - Zoster Complication OPCS Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001599.

Forbes, H (2020). Clinical Code List - Zoster Complication Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001596.

Forbes, H (2020). Clinical Code List - Zoster Complication SNOMED Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001597.

Forbes, H (2020). Clinical Code List - Zoster Vaccination Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001604.

Forbes, H (2020). Clinical Code List - Zoster Vaccination SNOMED Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001605.

Forbes, H (2020). Clinical Code List - Zoster and PHN Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001581.

Forbes, H (2020). Clinical Code List - Zoster and PHN Diagnosis Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001582.

Forbes, H (2020). Clinical Code List - Zoster and PHN ICD-10 Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001583.

Forbes, H (2020). Clinical Code list - Smoking SNOMED Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001603.

Forbes, H (2020). Therapy Code List - Antiviral BNF Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001594.

Forbes, H (2020). Therapy Code List - Antiviral Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001595.

Forbes, H (2020). Therapy Code List - Immunosuppression Aurum Therapy Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001589.

Forbes, H (2020). Therapy Code List - Moderate Immunosuppression BNF Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001588.

Forbes, H (2020). Therapy Code List - Zoster Vaccination BNF Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001606.

Forbes, H (2020). Therapy Code List - Zoster Vaccination Therapy Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001607.

Frison, S (2020). Wasting prevention CHNRI dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001552.

G

Gibbs, H, CMMID nCov Working Group, Eggo, RM, Grundy, C and Kucharski, AJ (2020). UK Colocation Dashboard. [Data Collection]. Github. https://cmmid.github.io/colocation_dashboard_cmmid/

Glynn, J (2020). Systematic analysis of infectious disease outcomes by age. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001787.

H

Hellewell, J, Abbott, S, Gimma, A, Bosse, N, Jarvis, C, Russell, T, Munday, J, Kucharski, A, Edmunds, WJ, Funk, S, Eggo, R, Sun, F, Flasche, S, Quilty, B, Davies, N, Liu, Y, Clifford, S, Klepac, P, Jit, M, Diamond, C, Gibbs, H and Van Zandvoort, K (2020). Feasibility of controlling COVID-19 outbreaks by isolation of cases and contacts. [Data Collection]. Github. https://github.com/cmmid/ringbp/

I

Iwagami, M and Tomlinson, LA (2020). Clinical codelist - Alcohol status read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001691.

Iwagami, M and Tomlinson, LA (2020). Clinical codelist - Cancer codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001677.

Iwagami, M and Tomlinson, LA (2020). Clinical codelist - Chronic liver disease codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001681.

Iwagami, M and Tomlinson, LA (2020). Clinical codelist - Chronic pulmonary disease codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001682.

Iwagami, M and Tomlinson, LA (2020). Clinical codelist - Diabetes codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001672.

Iwagami, M and Tomlinson, LA (2020). Clinical codelist - Dry cough codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001693.

Iwagami, M and Tomlinson, LA (2020). Clinical codelist - HIV and AIDS read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001683.

Iwagami, M and Tomlinson, LA (2020). Clinical codelist - Heart failure read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001674.

Iwagami, M and Tomlinson, LA (2020). Clinical codelist - Hypertension read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001671.

Iwagami, M and Tomlinson, LA (2020). Clinical codelist - Inflammatory bowel disease codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001679.

Iwagami, M and Tomlinson, LA (2020). Clinical codelist - Myocardial infarction codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001673.

Iwagami, M and Tomlinson, LA (2020). Clinical codelist - Proteinuria diagnosis codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001675.

Iwagami, M and Tomlinson, LA (2020). Clinical codelist - Renal replacement therapy codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001676.

Iwagami, M and Tomlinson, LA (2020). Clinical codelist - Rheumatoid arthritis codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001678.

Iwagami, M and Tomlinson, LA (2020). Clinical codelist - Smoking status read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001690.

Iwagami, M and Tomlinson, LA (2020). Clinical codelist - Systematic lupus erythematosus codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001680.

Iwagami, M and Tomlinson, LA (2020). Clinical codelist - Zoster codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001692.

Iwagami, M and Tomlinson, LA (2020). Therapy codelist - ACEI codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001669.

Iwagami, M and Tomlinson, LA (2020). Therapy codelist - ARB codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001670.

Iwagami, M and Tomlinson, LA (2020). Therapy codelist - Beta blocker. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001684.

Iwagami, M and Tomlinson, LA (2020). Therapy codelist - Calcium channel blocker codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001685.

Iwagami, M and Tomlinson, LA (2020). Therapy codelist - Diuretic codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001687.

Iwagami, M and Tomlinson, LA (2020). Therapy codelist - Oral corticosteroid. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001689.

Iwagami, M and Tomlinson, LA (2020). Therapy codelist - Statin codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001686.

J

Jarvis, C, Van zandvoort, K, Gimma, A, Prem, K, CMMID, Cwg, Klepac, P, Rubin, GJ and Edmunds, WJ (2020). Contact survey during COVID-19. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3741391

Jombart, T, Abbott, S, Gimma, A, Zandvoort, K, Clifford, S, Jarvis, C, Russell, T, Funk, S, Gibbs, H, Eggo, RM, Kucharski, AJ, CMMID COVID-19 Working Group and Edmunds, WJ (2020). Inferring COVID-19 cases from deaths of confirmed cases. [Data Collection]. CMMID Repository. https://cmmid.github.io/visualisations/inferring-covid19-cases-from-deaths

Jombart, T, Clifford, S, Pearson, Carl A. B. Pearson, Rees, E, Nightingale, E, Procter, S and Knight, G (2020). thibautjombart/covid19_bed_occupancy: Second major release. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3746662

Jombart, T, Kamvar, ZN, Collins, C, Luštrik, R, Beugin, M, Knaus, BJ, Solymos, P, Mikryukov, V, Schliep, K, Maié, T, Morkovsky, L, Ahmed, I, Cori, A, Calboli, F, Ewing, R, Michaud, F, DeCamp, R and Courtiol, A (2020). adegenet: Exploratory Analysis of Genetic and Genomic Data. [Data Collection]. The Comprehensive R Archive Network. https://cran.r-project.org/web/packages/adegenet/

Jombart, T and Schumacher, D (2020). trendbreaker 0.1.0: Detect Changes in Temporal Trends. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3888493

K

Kanjala, C, Gregory, A, Greenfield, J, Slaymaker, E and Todd, J (2020). User requirements elicitation study for ALPHA network data provenance documentation browsing software. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001522.

Keogh, R, Seaman, SR, Gran, JM and Vansteelandt, S (2020). Causal Sim code. [Data Collection]. Github. https://github.com/ruthkeogh/causal_sim

Klepac, P, Kucharski, AJ, Conlan, AJ, Kissler, S, Tang, M, Fry, H and Gog, JR (2020). Contacts in context: large-scale setting-specific social mixing matrices from the BBC Pandemic project. [Data Collection]. Medrxiv. https://doi.org/10.1101/2020.02.16.20023754

Krug, C, Lynch, C, Cavallaro, F and Wong, K (2020). Evaluating the informed push model intervention in Senegal. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001570.

Kucharski, AJ, Russell, TW, Diamond, C, CMMID nCoV working group, Funk, S and Eggo, RM (2020). Probability of a large 2019-nCoV outbreak following introduction of cases. [Data Collection]. Github. https://cmmid.github.io/visualisations/new-outbreak-probability

L

Lawn, JE, Waiswa, P, Waiswa, JA, Kwesiga, D, Blencowe, H, Baschieri, A, Gordeev, VS and EN-INDEPTH Collaborator Group (2020). Every Newborn INDEPTH (EN-INDEPTH) Study - Additional Materials. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001556.

Leclerc, QJ, Fuller, NM, Knight, LE, Funk, S and Knight, GM (2020). COVID19 settings of transmission - collected reports database. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.12173343.v3

Leclerc, QJ, Nightingale, E and Abbott, S (2020). qleclerc/nhs_pathways_report. [Data Collection]. Github. https://github.com/qleclerc/nhs_pathways_report

Leng, T, White, C, Hilton, J, Kucharski, AJ, Pellis, L, Stage, H, Davies, N, CMMID-Covid-19 WG, Keeling, MJ and Flasche, S (2020). tsleng93/SocialBubble. [Data Collection]. Github. https://github.com/tsleng93/SocialBubble

Leung, K, Jit, M, Lau, EHY and Wu, JT (2020). Social contact data for Hong Kong. [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.3874808

Limbada, M, Shibwela, O, Macleod, D and Ayles, H (2020). Data for: Acceptability and Preferences of two different Community Models of ART delivery in a high prevalence Urban Setting in Zambia, nested within the HPTN 071 (PopART) trial. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001657.

Liu, Y, Funk, S and Flasche, S (2020). yangclaraliu/2019nCoV_proportion_asym: WOR Submission. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3709941

London School of Hygiene & Tropical Medicine (2020). P.vivax whole genome sequencing. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/data/view/PRJEB36199

M

Mansfield, KE, Nitsch, D, Smeeth, L, Iwagami, M, Johnston, R and Tomlinson, LA (2020). ISAC Protocol 17_197R: The effect of renin-angiotensin system inhibitors on haemoglobin. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/PUBS.04656899

Matos, M, Reis, J, Smythe, T, Duttine, A, Ferrite, S and Kuper, H (2020). The feasibility of a group intervention for children with congenital zika syndrome – qualitative dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001762.

Mcdonald, H, Evans, D, Clay, S, Edelstein, M and Thomas, S (2020). Immunisation risk group - Cardiac disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001661.

Mcdonald, H, Evans, D, Clay, S, Edelstein, M and Thomas, S (2020). Immunisation risk group - Diabetes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001665.

Mcdonald, H, Evans, D, Clay, S, Edelstein, M and Thomas, S (2020). Immunisation risk group - chronic kidney disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001664.

Mcdonald, H, Evans, D, Clay, S, Edelstein, M and Thomas, S (2020). Immunisation risk group - chronic respiratory disease without asthma. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001663.

Mcdonald, H, Evans, D, Clay, S, Edelstein, M and Thomas, S (2020). Immunisation risk group - liver disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001662.

Mendoza, C, Jaramillo, G, Ant, TH, Power, GM, Jones, R, Quintero, J, Alexander, N, Webster, J, Osorio, L and Logan, J (2020). An investigation into the knowledge, perceptions and role of personal protective technologies in Zika prevention in Colombia. [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.3596686

Mendoza, C, Jaramillo, G, Ant, T, Power, GM, Jones, R, Quintero, J, Alexander, N, Webster, J, Osorio, L and Logan, J (2020). An investigation into the knowledge, perceptions and role of personal protective technologies in Zika prevention in Colombia. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0007970.s001

Mooney, JP, Qendro, T, Keith, M, Philbey, AW, Groves, HT, Tregoning, JS, Goodier, MR and Riley, EM (2020). Data_Sheet_2_Natural Killer Cells Dampen the Pathogenic Features of Recall Responses to Influenza Infection. [Data Collection]. Frontiers. https://doi.org/10.3389/fimmu.2020.00135.s002

Mpairwe, H and Webb, E (2020). SONA project - Risk factors for allergy-related diseases among schoolchildren in Uganda. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001761.

Mudzengi, D, Sweeney, S, Hippner, P, Kufa, T, Fielding, K, Grant, AD, Churchyard, GJ and Vassall, A (2020). The patient costs of care for those with TB and HIV: a cross-sectional study from South Africa. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001593.

N

Nyarko, PB, Tarr, SJ, Aniweh, Y, Stewart, LB, Conway, DJ and Awandare, GA (2020). Investigating a Plasmodium falciparum erythrocyte invasion phenotype switch at the whole transcriptome level. [Data Collection]. Scientific Reports. https://doi.org/10.1038/s41598-019-56386-y

Nyundo, C, Doyle, AM, Walumbe, D, Otiende, M, Kinuthia, M, Amadi, D, Jibendi, B, Mochamah, G, Kihuha, N, Williams, T, Ross, DA and Bauni, E (2020). Supplementary files 2 and 3 for "Linking health facility data from young adults aged 18-24 years to longitudinal demographic data: Experience from The Kilifi Health and Demographic Surveillance System". [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.11880657.v2

O

O'hara, G, Mokaya, J, Hau, JP, Downs, LO, McNaughton, AL, Karabarinde, A, Asiki, G, Seeley, J, Matthews, PC and Newton, R (2020). Liver function tests and fibrosis scores in a rural population in Africa. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.8292194

P

Paradis, E, Kamvar, ZN, Jombart, T, Brian, K and Frederic, M (2020). pegas: Population and Evolutionary Genetics Analysis System. [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.3647668

Parker, E (2020). Covid 2019 tracker. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://vac-lshtm.shinyapps.io/ncov_tracker/

Pearson, CAB, Van zandvoort, K, Jarvis, CI, Davies, NG, Thompson, S, Checchi, F, Jit, M, Eggo, RM and LSHTM CMMID COVID-19 Working Group (2020). Projections of COVID-19 epidemics in LMIC countries. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001564.

Peppa, M, Thomas, S, Kempley, S and Mangtani, P (2020). Clinical codelist - Congenital malformation codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001623.

Peppa, M, Thomas, S, Kempley, S and Mangtani, P (2020). HES diagnosis codelist - Congenital malformation codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001624.

Peppa, M, Thomas, S, Kempley, S and Mangtani, P (2020). HES procedures codelist - Congenital malformation codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001625.

Phelan, J and Deelder, W (2020). COVID-Profiler. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://github.com/jodyphelan/covid-profiler

Pocock, NS and Kiss, L (2020). Results from a before-and-after learning assessment of pre-migration departure training for prospective female migrants in Odisha, India. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001789.

Prem, K, Liu, Y, Russell, TW, Kucharski, AJ, Eggo, RM, Davies, N, Jit, M, Klepac, P, Flasche, S, Clifford, S, Pearson, CAB, Munday, JD, Abbott, S, Gibbs, H, Rosello, A, Quilty, BJ, Jombart, T, Sun, F, Diamond, C, Gimma, A, Van zandvoort, K, Funk, S, Jarvis, CI, Edmunds, WJ, Bosse, NI and Hellewell, J (2020). Age-structured SEIR model for COVID-19 outbreak in Wuhan, China. [Data Collection]. Github. https://github.com/kieshaprem/covid19-agestructureSEIR-wuhan-social-distancing

Q

Quint, J (2020). Clinical codelist - Cough (used to help detect COPD exacerbations). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001649.

Quint, J (2020). Clinical codelist - acute COPD exacerbation (used to help detect COPD exacerbations). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001653.

Quint, JK (2020). Clinical codelist - Asthma codes (exclusion criteria). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001642.

Quint, JK (2020). Clinical codelist - Breathlessness (used to help detect COPD exacerbations). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001651.

Quint, JK (2020). Clinical codelist - LRTI (used to help detect COPD exacerbations). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001652.

Quint, JK (2020). Clinical codelist - Sputum (used to help detect COPD exacerbations). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001650.

Quint, JK (2020). Therapy codelist - Long-acting beta agonists. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001632.

Quint, JK (2020). Therapy codelist - Oral Corticosteroid codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001641.

Quint, JK (2020). Therapy codelist - inhaled Corticosteroid codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001640.

Quint, JK (2020). Therapy codelist - long-acting muscarinic antagonist codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001639.

Quint, JK and Mcdonald, H (2020). Clinical codelist - Pneumonia detection. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001654.

Quint, JK and Wing, K (2020). Therapy codelist - Antibiotic therapy for respiratory infections (used to help detect COPD exacerbations). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001648.

Quintero, J, Ronderos Pulido, N, Logan, J, Ant, T, Bruce, J and Carrasquilla, G (2020). Effectiveness of an intervention for Aedes aegypti control scaled-up under an inter-sectoral approach in a Colombian city hyper-endemic for dengue virus. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0230486

R

Robert, A (2020). geosocial-outbreaker: Integrating geographical and social contact data to reconstruct transmission chains. [Data Collection]. Github. https://github.com/alxsrobert/o2geosocial

Roberts, C, Rogers, N, Waterlow, N, Brindle, H, Enria, L and Lees, S (2020). Behavioural change towards reduced intensity physical activity is disproportionately prevalent among adults with serious health issues or self-perception of high risk during the UK COVID-19 lockdown. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001753.

Russell, TW, Hellewell, J, Abbott, S, Jarvis, C, Zandvoort, Kv, Ratnayake, R, CMMID nCov working group, Flasche, S, Eggo, RM, Edmunds, WJ and Kucharski, AJ (2020). thimotei/CFR_calculation. [Data Collection]. Github. https://github.com/thimotei/CFR_calculation

Russell, TW, Hellewell, J, Jarvis, CI, Van-Zandvoort, K, Abbott, S, Ratnayake, R, Flasche, S, Eggo, RM and Kucharski, AJ (2020). Estimating the infection and case fatality ratio for COVID-19 using age-adjusted data from the outbreak on the Diamond Princess cruise ship. [Data Collection]. Github. https://github.com/thimotei/cCFRDiamondPrincess

S

Schmidt, SAJ, Langan, S and Wong, A (2020). Clinical Code List - Alopecia areata - Read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001539.

Schmidt, SAJ, Langan, S and Wong, A (2020). Clinical code list - Alopecia areata - ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001538.

Schmidt, SAJ, Langan, S and Wong, A (2020). Clinical code list - Urticaria - ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001541.

Schmidt, SAJ, Langan, S and Wong, A (2020). Clinical code list - Urticaria - Read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001540.

Schmidt, SAJ, Langan, S and Wong, A (2020). Clinical code list - Vitiligo - ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001542.

Schmidt, SAJ, Langan, S and Wong, A (2020). Clinical code list - Vitiligo - Read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001543.

Smythe, T, Nogaro, M, Clifton, LJ, Mudariki, D, Theologis, T and Lavy, C (2020). ACT and photograph scores dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001563.

Strongman, H and Bathe, K (2020). Clinical code list - Incompletely specified Cancer read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001545.

Sturt, A, Bustinduy, A and Phiri, C (2020). BILHIV acceptability dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001618.

Sturt, A, Webb, E and Bustinduy, A (2020). BILHIV Genital Self-Sampling Dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001777.

Sutherland, C and Henrici, R (2020). The Plasmodium falciparum artemisinin susceptibility-associated AP-2 adaptin mu subunit is clathrin-independent and essential for schizont-maturation v2.0. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001533.

Sweeney, S and Kitson, N (2020). TB-Practecal economic evaluation sub-study: Data collection tools. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001799.

T

Thomas, S (2020). COVID-19 risk group - Neurological disease codelist. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001704.

Thomas, S, Peppa, M and Walker, J (2020). Clinical codelist - Influenza vaccination codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001626.

Thomas, S, Peppa, M and Walker, J (2020). Immunisation codelist - Influenza vaccination codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001627.

Thomas, S, Peppa, M and Walker, J (2020). Therapy codelist - Influenza vaccination codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001628.

Tomlinson, LA, Iwagami, M, Bidulka, P and Wong, AY (2020). Supplementary data for “Comparisons of Staphylococcus aureus infection and other outcomes between users of angiotensin-converting-enzyme inhibitors and angiotensin II receptor blockers: lessons for COVID-19 from a nationwide cohort study”. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/PUBS.04656578.

V

Vaccine Centre (2020). COVID-19 vaccine development pipeline. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://vac-lshtm.shinyapps.io/ncov_vaccine_landscape/

Van de wijgert, JH, Verwijs, MC, Gill, AC, Borgdorff, H, van der Veer, C and Mayaud, P (2020). Pathobionts in the Vaginal Microbiota: Individual Participant Data Meta-Analysis of Three Sequencing Studies. [Data Collection]. Frontiers in Cellular and Infection Microbiology. https://doi.org/10.3389/fcimb.2020.00129

van der Laan, LC, Meeks, KAC, Chilunga, FP, Agyemang, C, Venema, A, Mannens, Marcel M. A. M., Zafarmand, MH, Klipstein-Grobusch, K, Smeeth, L, Adeyemo, A and Henneman, P (2020). Epigenome-wide association study for perceived discrimination among sub-Saharan African migrants in Europe - the RODAM study. [Data Collection]. Scientific Reports. h.

W

Walker, T, Jeffries, CL, Yakob, L, White, M and Wilson, L (2020). Detection of a novel insect-specific flavivirus across ecologically diverse populations of Aedes aegypti on the Caribbean Island of Saint Lucia. [Data Collection]. Open Science Framework. https://doi.org/10.17605/OSF.IO/8UYB7

Willem, L, Xiao, L, Antillon, M, Bilcke, J, Jit, M and Beutels, P (2020). Multi-Country Model Application for RSV Cost-Effectiveness Policy (McMarcel). [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.3663447

Williamson, E, Walker, AJ, Bhaskaran, KJ, Bacon, S, Bates, C, Morton, CE, Curtis, HJ, Mehrkar, A, Evans, D, Inglesby, P, Cockburn, J, Mcdonald, HI, MacKenna, B, Tomlinson, L, Douglas, IJ, Rentsch, CT, Mathur, R, Wong, A, Grieve, R, Harrison, D, Forbes, H, Schultze, A, Croker, RT, Parry, J, Hester, F, Harper, S, Perera, R, Evans, S, Smeeth, L and Goldacre, B (2020). ebmdatalab/opensafely-risk-factors-research. [Data Collection]. Github. https://github.com/ebmdatalab/opensafely-risk-factors-research

Wing, K and Quint, JK (2020). Clinical codelist - Alcohol or substance abuse (exclusion criteria). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001645.

Wing, K and Quint, JK (2020). Clinical codelist - Conditions likely to interfere with ability of person to take part in an RCT (exclusion criteria). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001647.

Wing, K and Quint, JK (2020). Clinical codelist - lung/respiratory conditions other than COPD (exclusion criteria). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001643.

Wing, K and Quint, JK (2020). Clinical codelist- Oxygen therapy (exclusion criteria). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001646.

Wing, K and Quint, JK (2020). Therapy codelist - Oxygen therapy (exclusion criteria). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001644.

Wyres, KL, Nguyen, TNT, Lam, MMC, Judd, LM, van Vinh Chau, N, Dance, DAB, Ip, M, Karkey, A, Ling, CL, Miliya, T, Newton, PN, Lan, NPH, Sengduangphachanh, A, Turner, P, Veeraraghavan, B, Vinh, PV, Vongsouvath, M, Thomson, NR, Baker, S and Holt, KE (2020). Data for, "Genomic surveillance for hypervirulence and multi-drug resistance in invasive Klebsiella pneumoniae from south and southeast Asia.". [Data Collection]. Figshare. https://doi.org/10.26180/5c67982956721

This list was generated on Mon Jul 13 02:04:25 2020 BST.