Date Item Type No Grouping

Collection

Data repository for AZ-SMC - a trial of seasonal malaria chemoprevention combined with azithromycin in African children. (2020) Chandramohan, Daniel, Dicko, Alassane, Zongo, Issaka, Sagara, Issaka, Cairns, Matthew, Kuepfer, Irene, Diarra, Modibo, Barry, Amadou, Tapily, Amadou, Nikiema, Frederic, Yerbanga, Serge, Coumare, Samba, Thera, Ismaila, Traore, Abdourhamane, Milligan, Paul, Tinto, Halidou, Doumbo, Ogobara, Ouedraogo, Jean-Bosco, Greenwood, Brian

Code lists for: "Risk of adverse mental health outcomes in women with history of breast cancer: a matched population-based cohort study in the United Kingdom (1988-2018)". (2019) Carreira, Helena, Funston, Garth

Clinical code lists for: "Metformin use and risk of cancer in patients with type 2 diabetes: A cohort study of primary care records using inverse probability weighting of marginal structural models". (2018) Farmer, Ruth, Bhaskaran, Krishnan, Eastwood, Sophie V., Mathur, Rohini

Menstrual Hygiene and Safe Male Circumcision Promotion in Ugandan Schools (MENISCUS). (2018) Weiss, Helen

Dataset

Data for: "Study on Health seeking behaviour and determinants of undiagnosed hypertension in poor households in the Philippines, part of the RESPOND study (SHARP-RESPOND)". (2025) Palafox, Benjamin, Mckee, Martin, Balabanova, Dina, Palileo-Villanueva, Lia description

Uganda Liver Disease study – Dataset for analysis of liver, metabolic and cardiovascular parameters associated with mortality in the General Population Cohort. (2025) Newton, Robert, Matthews, Philippa, Campbell, Cori, Mugisha, Joseph, Kimono, Beatrice, Waddilove, Elizabeth, Makanga, Ronald, Wang, Tingyan, Seeley, Janet, Muzaale, Florence Nambaziira description

Ebola Survivors Lived Experiences – Coding Framework. (2025) Kinyanda, Eugene, Rutakumwa, Rwamahe, Mpango, Richard Stephen, Kyohangirwe, Leticia, Settuba, Eddie, Ninsiima, Susan description

Data supporting "Helminth-driven gut inflammation and microbial translocation are linked to altered vaccine responses in rural Uganda". (2025) Nkurunungi, Gyaviira, Nassuuna, Jacent description

MENISCUS Trial diary data. (2024) Weiss, Helen, Nelson, Kate, Thomas, Kathy, Mugenyi, Levicatus, Batuusa, Ratifah, Baleke, Christopher description

Synthetic datasets for: "Long-term exposure to PM2.5 and mortality: an analysis of the UK Biobank". (2024) Gasparrini, Antonio, Vanoli, Jacopo

Synthetic datasets of the UK Biobank cohort. (2024) Gasparrini, Antonio, Vanoli, Jacopo

Data and code for: “Weight gain among children with severe malnutrition in therapeutic feeding programmes: a systematic review and meta-analysis”. (2024) O'Donovan, Grace, Allen, Daniel, Nkosi-gondwe, Thandile, Anujuo, Kenneth, Abera, Mubarek, Kirolos, Amir, Olga, Laurentya, Thompson, Debbie, McKenzie, Kimberley, Wimborne, Elizabeth, Cole, Tim J, Koulman, Albert, Lelijveld, Natasha, Crampin, Amelia C., Kangas, Suvi, Badaloo, Asha, Ameya, Gemechu, Opondo, Charles, Kerac, Marko grid_on

Dataset for Analysis of ecological drivers of Rattus norvegicus positivity for Leptospira sp. and Seoul Hantavirus. (2024) Zeppelini, Caio Graco, Paixão, Ana Maria Borges Barreto, Santiago, Diogo, Sady Alves, Rafaela, Espirito Santo, Vivian, Mattos, Luciana H. B. V., Fernandes, Jorlan, Santos, Renata C. O. P., Oliveira, Daiana, Carneiro, Ianei O., Bazan, Leonela, Eyre, Max, Begon, Michael, Costa, Francisca, Khalil, Hussein

Source data for: "Dynamics of Trypanosoma cruzi infection in hamsters and novel association with progressive motor dysfunction". (2024) Langston, Harry, Fortes Francisco, Amanda, Doidge, Ciaran, Roberts, Chrissy H, Khan, Archie A, Jayawardhana, Shiromani, Taylor, Martin C, Kelly, John M, Lewis, Michael D

Search strategy for "Improving practice in Ugandan drug shops: a holistic approach to regulation". (2024) Falconer, Jane, Hutchinson, Eleanor, Kitutu, Freddy description

Data supporting “The effect of current helminth infection on vaccine responses among adolescents living in helminth-endemic islands of Lake Victoria, Uganda”. (2024) Natukunda, Agnes, Zirimenya, Ludoviko, Nkurunungi, Gyaviira, Nassuna, Jacent, Elliott, Alison M., Webb, Emily description

AndriaMousa/chemoprevention-trial-code. (2024) Mousa, Andria

OpenDengue/master-repo. (2024) Lim, Ahyoung, Brady, Oliver J

Data for: Young People’s use of Technology, and mental health and well-being. (2024) Doyle, Aoife description

Data supporting "Does schistosome or malaria exposure contribute to urban-rural differences in vaccine responses in Uganda? A causal mediation analysis using data from three linked randomised controlled trials.". (2024) Natukunda, Agnes, Nkurunungi, Gyaviira, Zirimenya, Ludoviko, Nassuuna, Jacent, Elliott, Alison M., Webb, Emily description

Data supporting "The effect of intensive praziquantel treatment on vaccine-specific responses among schoolchildren in Ugandan schistosomiasis-endemic islands: results of the POPVAC A randomised, controlled trial". (2024) Nkurunungi, Gyaviira, Nassuuna, Jacent, Natukunda, Agnes, Zirimenya, Ludoviko, Webb, Emily, Elliott, Alison description

Data supporting "The effect of intermittent preventive treatment for malaria with dihydroartemisinin-piperaquine on vaccine-specific responses among schoolchildren in rural Uganda: results of the POPVAC B randomised, controlled trial". (2024) Zirimenya, Ludoviko, Natukunda, Nkrunungi, Nassuuna, Nassuuna, Nkurunungi, Gyaviira, Elliott, Alison M., Webb, Emily description

Data supporting: "The effect of BCG revaccination on the response to unrelated vaccines in urban Ugandan adolescents: results of the POPVAC C randomised, controlled trial". (2024) Nassuuna, Jacent, Zirimenya, Ludoviko, Nkurunungi, Gyaviira, Natukunda, Agnes, Webb, Emily, Elliott, Alison M. description

SARS-CoV-2 Seroprevalence in Kenya dataset. (2024) Koech, Angela, Omuse, Geoffrey, Mugo, Alex, Mwaniki, Isaac, Mutunga, Joseph, Mukhanya, Moses, Wanje, Onesmus, Mwashigadi, Grace, Katana, Geoffrey, Craik, Rachel, Von Dadelszen, Peter, Le Doare, Kirsty, Temmermen, Marleen, The PRECISE Network description

SARS-CoV-2 Seroprevalence in The Gambia dataset. (2024) Roca, Anna, Janha, Ramatoulie, Bah, Alasana, Jah, Hawanatu, Tourey, Fatima, Idris, Yahaya, Keita, Saikou, Gaye, Yassin, Jallow, Samba, Faye-joof, Tisbeh, Njie, Baboucarr, Craik, Rachel, Mohammed, Nuredin, von Dadelszen, Peter, D’alessandro, Umberto description

Women’s subsistence strategies predict fertility across cultures, but context matters. (2024) Page, Abigail E, Sear, Rebecca, Ringen, Erik

Cross sectional survey data for self-reported ever and recent (last 12 months) STI testing. (2024) Hensen, Bernadette, Phiri, Mwelwa M., Sigande, Lucheka, Schaap, Ab, Simuyaba, Melvin, Zulu-Phiri, Rosemary, Mwape, Louis, Floyd, Sian, Fidler, Sarah, Hayes, Richard, Simwinga, Musonda, Ayles, Helen description

epidemery/subclinical_transmission. (2023) Emery, Jon C, Dodd, Peter J, Banu, Sayera, Frascella, Beatrice, Garden, Frances L, Horton, Katherine C, Hossain, Shahed, Law, Irwin, van Leth, Frank, Marks, Guy B, Nguyen, Hoa Binh, Nguyen, Hai Viet, Onozaki, Ikushi, Quelapio, Maria Imelda D, Richards, Alexandra S, Shaikh, Nabila, Tiemersma, Edine W, White, Richard G, Zaman, Khalequ, Cobelens, Frank, Houben, Rein MGJ

rorygibb/dengue_vietnam_ms: v1.0.0: Code base for Nature Communications MS. (2023) Gibb, Rory

jodyphelan/malaria-profiler. (2023) Phelan, Jody, Thorpe, Joseph

Dataset for: "Factors associated with use of community-based, peer-led sexual and reproductive health services by adolescent boys and young men aged 18-24 in Lusaka, Zambia: A case control study nested in the Yathu Yathu Trial.". (2023) Schaap, Albertus, Phiri, Mwelwa description

Codelists for: "Can observational data be used to determine drug effectiveness?". (2023) Teoh, Maud description

Data supporting "Prevalence of subclinical pulmonary tuberculosis and its association with HIV in household contacts of tuberculosis in two South African provinces: analysis of a cluster-randomised trial". (2023) Carter, Naomi, Webb, Emily, Lebina, Limakatso, Motsomi, Kegaugetswe, Bosch, Zama, Martinson, Neil, MacPherson, Peter description

Training of maternity service providers on supportive and dignified maternity care: pre-post training assessment. (2023) Khan, Bushra, Hameed, Waqas, Iqbal Avan, Bilal

shk313/Evaluating-sensitivity-and-specificity-from-LCM-a-simulation-study. (2023) Keddie, Suzanne H

Dataset for: "The impact of community-based, peer-led sexual and reproductive health services on knowledge of HIV-status among adolescents and young people aged 15-24 in Lusaka, Zambia: the Yathu Yathu cluster randomized trial". (2023) Floyd, Sian, Schaap, Albertus html

jodyphelan/malaria-db. (2023) Phelan, Jody, Manko, Emilia

opensafely/ckd-coverage-ve. (2022) Parker, Edward, Horne, Elsie

hklim06/Quantifying-human-animal-contact-rates-in-Malaysian-Borneo. (2022) Klim, Hannah, Fornace, Kimberly M

kevinvzandvoort/espicc-somaliland-digaale-survey-2019. (2022) van zandvoort, Kevin, Bobe, Mohamed Omer, Hassan, Abdirahman Ibrahim, Abdi, Mohamed Ismail, Ahmed, Mohammed Saed, Soleman, Saeed Mohamood, Warsame, Mohamed Yusuf, Wais, Muna Awil, Diggle, Emma, McGowan, Catherine R, Satzke, Catherine, Mulholland, Kim, Egeh, Mohamed Mohamoud, Hassan, Mukhtar Muhumed, Hergeeye, Mohamed Abdi, Eggo, Rosalind M, Checchi, Francesco, Flasche, Stefan

Additional file 1 of ESBL plasmids in Klebsiella pneumoniae: diversity, transmission and contribution to infection burden in the hospital setting. (2022) Hawkey, Jane, Wyres, Kelly L., Judd, Louise M., Harshegyi, Taylor, Blakeway, Luke, Wick, Ryan R., Jenney, Adam W. J., Holt, Kathryn E.

Additional file 3 of ESBL plasmids in Klebsiella pneumoniae: diversity, transmission and contribution to infection burden in the hospital setting. (2022) Hawkey, Jane, Wyres, Kelly L., Judd, Louise M., Harshegyi, Taylor, Blakeway, Luke, Wick, Ryan R., Jenney, Adam W. J., Holt, Kathryn E.

Additional file 4 of ESBL plasmids in Klebsiella pneumoniae: diversity, transmission and contribution to infection burden in the hospital setting. (2022) Hawkey, Jane, Wyres, Kelly L., Judd, Louise M., Harshegyi, Taylor, Blakeway, Luke, Wick, Ryan R., Jenney, Adam W. J., Holt, Kathryn E.

Respondent-Driven Sampling and Total Population Data from a Rural Ugandan Cohort, 2010: Special Licence Access. (2022) MRC/UVRI, White, Richard

Supporting files for: Performance bonuses and the quality of primary health care delivered by family health teams in Brazil: A difference-in differences analysis. (2022) Powell-Jackson, Timothy, Fardousi, Nasser, da Silva, Everton, Kovacs, Roxanne, Borghi, Josephine, Barreto, Jorge, Søren, Kristensen, Sampaio, Juliana, Shimizu, Helena Eri, Gomes, Luciano, Letícia, Xander, Garibaldi, Gurgel grid_on

Additional file 1 of Planning a method for covariate adjustment in individually randomised trials: a practical guide. (2022) Morris, Tim P., Walker, A. Sarah, Williamson, Elizabeth J., White, Ian R.

Additional file 2 of Planning a method for covariate adjustment in individually randomised trials: a practical guide. (2022) Morris, Tim P., Walker, A. Sarah, Williamson, Elizabeth J., White, Ian R.

Supplementary material for paper. (2022) Shah, Vishna, Torondel, Belen, Nabwera, Helen description

CHANGE Cohort 1: Long-term Implications Of Nutrition (LION) dataset. (2022) Kerac, Marko, Anujuo, Kenneth, Thompson, Debbie, McKenzie, Kimberley, Badaloo, Asha, Boyne, Micheal, Forrester, Terrence, Gluckman, Peter, Hanson, Mark, Byrne, Christopher, Cutfield, Wayne, Kanjala, Chifundo, Opondo, Charles html

CHANGE Cohort 2: Chronic disease outcomes after Severe Acute Malnutrition (ChroSAM). Malawi. (2022) Kerac, Marko, Anujuo, Kenneth, Lelijveld, Natasha, Kanjala, Chifundo, Chimwezi, Emmanuel, Nyirenda, Moffat html

CHANGE Cohort 3: Assessment of Long-Term Health Consequences of Acute Malnutrition (ACAM). Ethiopia. (2022) Mengistie, Mubarek, Arefayne, Melkamu, Nigatu, Tsinuel, Abdissa, Alemseged, Anujuo, Kenneth, Kerac, Marko description

Dataset used in the assessment of the article "Basic urban services fail to neutralise environmental determinants of 'rattiness', a composite metric of rat abundance". (2022) Carvalho-Pereira, Ticiana, Eyre, Max T, Zeppelini, Caio G, Espirito Santo, Vivian F, Santiago, Diogo C, Santana, Roberta, Palma, Fabiana, Reis, Marbrisa, Lustosa, Ricardo, Khalil, Hussein, Diggle, Peter J, Giorgi, Emanuele, Costa, Federico, Begon, Michael

Community based interventions to improve HIV outcomes in youth: a cluster randomised trial in Zimbabwe (CHIEDZA). (2022) Dziva Chikwari, Chido

AntonS-bio/entropy. (2022) Spadar, Anton

Variation in water contact behaviour and risk of Schistosoma mansoni (re)infection among Ugandan school-aged children in an area with persistent high endemicity. (2022) Trienekens, Suzan C. M., Faust, Christina L., Besigye, Fred, Pickering, Lucy, Tukahebwa, Edridah M., Seeley, Janet, Lamberton, Poppy H. L.

Unexposed populations and potential COVID-19 burden in European countries as of 21st November 2021. (2021) Chapman, Lloyd A C, Barnard, Rosanna C, Russell, Timothy W, Abbott, Sam, Van Zandvoort, Kevin, Davies, Nicholas G, Kucharski, Adam J

Sedentarisation and maternal childcare networks: role of risk, gender and demography. (2021) Page, Abigail E, Dyble, Mark, Migliano, Andrea B, Viguier, Sylvain, Hassan, Anushé, Major-Smith, Daniel

Additional file 1 of Epigenetic modelling of former, current and never smokers. (2021) Langdon, Ryan J, Yousefi, Paul, Relton, Caroline L, Suderman, Matthew J

Additional file 4 of Epigenetic modelling of former, current and never smokers. (2021) Langdon, Ryan J, Yousefi, Paul, Relton, Caroline L, Suderman, Matthew J

Raw data for a systematic review of statistical methodologies to evaluate progression of chronic kidney disease using electronic healthcare records. (2021) Cleary, Faye, Nitsch, Dorothea, Prieto, David grid_on

Additional file 1 of Level and determinants of county health system technical efficiency in Kenya: two stage data envelopment analysis. (2021) Barasa, Edwine, Musiega, Anita, Hanson, Kara, Nyawira, Lizah, Mulwa, Andrew, Molyneux, Sassy, Maina, Isabel, Tsofa, Benjamin, Normand, Charles, Jemutai, Julie

Loop mediated isothermal amplification as a powerful tool for early diagnosis of hepatitis C virus. (2021) Witkowska McConnell, Weronika, Davis, Chris, Sabir, Suleman R., Garrett, Alice, Bradley-Stewart, Amanda, Jajesniak, Pawel, Reboud, Julien, Xu, Gaolian, Yang, Zhugen, Gunson, Rory, Thomson, Emma C., Cooper, Jonathan

Additional file 2 of Investigating the DNA methylation profile of e-cigarette use. (2021) Richmond, Rebecca C., Sillero-Rejon, Carlos, Khouja, Jasmine N., Prince, Claire, Board, Alexander, Sharp, Gemma, Suderman, Matthew, Relton, Caroline L., Munafò, Marcus, Gage, Suzanne H.

fsera/COVIDWeather. (2021) Sera, Francesco, Abbott, Sam, Roye, Dominic

Data for: "Importance of ventilation and occupancy to Mycobacterium tuberculosis transmission rates in congregate settings". (2021) Shaikh, Nabila, McCreesh, Nicky, Deol, Arminder folder_zip

CHAKA-SONA Normative dataset. (2021) Nampijja, Margaret, Sembajjwe, Wilber, Mpango, Richard Stephen, Mpairwe, Harriet, Kinyanda, Eugene, Edward, Jane, Ayikoru, Teddy description

Software and results for: An agent-based model for simulating the impact of social norms on active commuting interventions. (2021) Greener, Robert, Lewis, Daniel, Reades, Jon, Miles, Simon, Cummins, Steven

KamTan/MediationSimulation. (2021) Tanner, Kamaryn T, Sharples, Linda D, Daniel, Rhian M, Keogh, Ruth H

Blood pressure levels among children in rural Uganda: results from 1,913 children in a general population survey. (2021) Kansiime, Sheila description

Neurocognitive outcomes of HIV-associated tuberculous meningitis dataset. (2021) Cresswell, Fiona, Quinn, Carson description

CoMix social contact data (UK). (2021) Gimma, Amy, Wong, Kerry LM, Van Xandvoort, Kevin, Jarvis, Christopher I., Edmunds, W. John

Additional file 1 of A framework for handling missing accelerometer outcome data in trials. (2021) Tackney, Mia S., Cook, Derek G., Stahl, Daniel, Ismail, Khalida, Williamson, Elizabeth, Carpenter, James

Study investigating the clinical manifestations of Rift Valley fever in humans: Systematic review and meta-analysis. (2021) Anywaine, Zacchaeus, Lule, Swaib Abubaker, Hansen, Christian, Warimwe, George, Elliott, Alison grid_on

Liver function tests and fibrosis scores in a rural population in Africa. (2021) O’Hara, Geraldine, Mokaya, Jolynne, Hau, Jeffrey, Downs, Louise, Karabarinde, Alex, Asiki, Gershim, McNaughton, Anna, Seeley, Janet, Matthews, Philippa, Newton, Robert

Code for: "Socioeconomic inequalities in the quality of primary care under Brazil’s national pay-for-performance programme: a longitudinal study of family health teams". (2021) Powell-Jackson, Timothy, Kovacs, Roxanne, Borghi, Josephine description

StAR2D Patient Interview and Focus Group Guide: Formative Intervention development study. (2021) Leon, Natalie, Namadingo, Hazel, Bobrow, Kirsty, Cooper, Sara, Crampin, Amelia C., Pauly, Bruno, Levitt, Naomi, Farmer, Andrew description

Data for: "High initial IgG antibody levels against Orientia tsutsugamushi are associated with an increased risk of severe scrub typhus infection". (2021) Schmidt, Wolf html

National Survey of Sexual Attitudes and Lifestyles, 2010-2012: Biological Data: Secure Access. (2021) NatCen Social Research, London School of Hygiene & Tropical Medicine, Russell, M., Senior, M.

National Survey of Sexual Attitudes and Lifestyles, 2010-2012: Secure Access. (2021) Russell, M., NatCen Social Research, London School of Hygiene & Tropical Medicine, Senior, M.

WOR CM co-infections data file.xlsx. (2020) Ellis, Jayne

Additional file 2 of Sero-epidemiological evaluation of malaria transmission in The Gambia before and after mass drug administration. (2020) Wu, Lindsey, Mwesigwa, Julia, Affara, Muna, Bah, Mamadou, Correa, Simon, Hall, Tom, Singh, Susheel K., Beeson, James G., Tetteh, Kevin, Kleinschmidt, Immo, D'Alessandro, Umberto, Drakeley, Chris

Data for "HANDS project - Hand-hygiene of Attendants for Newborn Deliveries and Survival". (2020) Gon, Giorgia description

Testing the buffering hypothesis: breastfeeding problems, cessation and social support. (2020) Page, Abigail E., Emmott, Emily H, Myers, Sarah

AZ-SMC Trial - Cross-sectional dataset. (2020) Chandramohan, Daniel, Dicko, Alassane, Zongo, Issaka, Sagara, Issaka, Cairns, Matthew, Kuepfer, Irene, Diarra, Modibo, Barry, Amadou, Tapily, Amadou, Nikiema, Frederic, Yerbanga, Serge, Coumare, Samba, Thera, Ismaila, Traore, Abdourhamane, Milligan, Paul, Tinto, Halidou, Doumbo, Ogobara, Ouedraogo, Jean-Bosco, Greenwood, Brian description

AZ-SMC Trial - Drug administration dataset. (2020) Chandramohan, Daniel, Dicko, Alassane, Zongo, Issaka, Sagara, Issaka, Cairns, Matthew, Kuepfer, Irene, Diarra, Modibo, Barry, Amadou, Tapily, Amadou, Nikiema, Frederic, Yerbanga, Serge, Coumare, Samba, Thera, Ismaila, Traore, Abdourhamane, Milligan, Paul, Tinto, Halidou, Doumbo, Ogobara, Ouedraogo, Jean-Bosco, Greenwood, Brian description

AZ-SMC Trial - In vivo treatment efficacy dataset. (2020) Chandramohan, Daniel, Dicko, Alassane, Zongo, Issaka, Sagara, Issaka, Cairns, Matthew, Kuepfer, Irene, Diarra, Modibo, Barry, Amadou, Tapily, Amadou, Nikiema, Frederic, Yerbanga, Serge, Coumare, Samba, Thera, Ismaila, Traore, Abdourhamane, Milligan, Paul, Tinto, Halidou, Doumbo, Ogobara, Ouedraogo, Jean-Bosco description

AZ-SMC Trial - Person-Time dataset. (2020) Chandramohan, Daniel, Dicko, Alassane, Zongo, Issaka, Sagara, Issaka, Cairns, Matthew, Kuepfer, Irene, Diarra, Modibo, Barry, Amadou, Tapily, Amadou, Nikiema, Frederic, Yerbanga, Serge, Coumare, Samba, Thera, Ismaila, Traore, Abdourhamane, Milligan, Paul, Tinto, Halidou, Doumbo, Ogobara, Ouedraogo, Jean-Bosco, Greenwood, Brian description

AZ-SMC Trial - School child parasitaemia dataset. (2020) Chandramohan, Daniel, Dicko, Alassane, Zongo, Issaka, Sagara, Issaka, Cairns, Matthew, Kuepfer, Irene, Diarra, Modibo, Barry, Amadou, Tapily, Amadou, Nikiema, Frederic, Yerbanga, Serge, Coumare, Samba, Thera, Ismaila, Traore, Abdourhamane, Milligan, Paul, Tinto, Halidou, Doumbo, Ogobara, Ogobara, Jean-Bosco, Greenwood, Brian description

AZ-SMC Trial - Weekly survey dataset. (2020) Chandramohan, Daniel, Dicko, Alassane, Zongo, Issaka, Sagara, Issaka, Cairns, Matthew, Kuepfer, Irene, Diarra, Modibo, Barry, Amadou, Tapily, Amadou, Nikiema, Frederic, Yerbanga, Serge, Coumare, Samba, Thera, Ismaila, Traore, Abdourhamane, Milligan, Paul, Tinto, Halidou, Doumbo, Ogobara, Ouedraogo, Jean-Bosco, Greenwood, Brian description

Comparison of small-sample standard-error corrections for generalised estimating equations in stepped wedge cluster randomised trials with a binary outcome: A simulation study. (2020) Thompson, Jennifer

Transmission analysis of a large TB outbreak in London: a mathematical modelling study using genomic data. (2020) Xu, Yuanwei, Stockdale, Jessica E, Naidu, Vijay, Hatherell, Hollie, Stimson, James, Stagg, Helen R, Abubakar, Ibrahim, Colijn, Caroline

gasparrini/2017_lopezbernal_IJE_codedata. (2020) Lopez-Bernal, James, Cummins, Steven, Gasparrini, Antonio

Survey data on knowledge, attitudes and practices regarding Malaria and bed net usage on Bubaque Island, Guinea-Bissau. (2020) Hutchins, Harry, Power, Grace, Ant, Thomas, Teixeira da Silva, Eunice, Goncalves, Adriana, Rodrigues, Amabelia, Logan, James, Mabey, David, Last, Anna R. html

UK prevalence of risk factors for severe COVID-19 disease, by age and region: point prevalence estimates in 2019 and 2014, using electronic health records. (2020) Walker, Jemma, Grint, Daniel, Strongman, Helen, Eggo, Rosalind M., Peppa, Maria, Minassian, Caroline, Mansfield, Kathryn E., Rentsch, Christopher, Douglas, Ian J., Mathur, Rohini, Wong, Angel, Quint, Jennifer K., Andrews, Nick, Lopez-bernal, James, Scott, Anthony, Ramsay, Mary, Smeeth, Liam, McDonald, Helen folder_zip

Ebola Gbalo: Building Resilient Health Systems in post-Ebola Sierra Leone. (2020) Mayhew, Susannah, Richards, Paul folder_zip

Virological failure, HIV-1 drug resistance, and early mortality in adults admitted to hospital in Malawi: an observational cohort study data set. (2020) Gupta-Wright, Ankur description

Data from: Evolution and epidemic spread of SARS-CoV-2 in Brazil. (2020) Candido, Darlan S., Claro, Ingra M., de Jesus, Jaqueline G., Souza, William M., Moreira, Filipe R. R., Dellicour, Simon, Mellan, Thomas A., du Plessis, Louis, Pereira, Rafael H. M., Sales, Flavia C. S., Manuli, Erika R., Thézé, Julien, Almeida, Luiz, Menezes, Mariane T., Voloch, Carolina M., Fumagalli, Marcilio J., Coletti, Thaís M., da Silva, Camila A. M., Ramundo, Mariana S., Amorim, Mariene R., Hoeltgebaum, Henrique H., Mishra, Swapnil, Gill, Mandev S., Carvalho, Luiz M., Buss, Lewis F., Prete, Carlos A., Ashworth, Jordan, Nakaya, Helder I., Peixoto, Pedro S., Brady, Oliver J., Nicholls, Samuel M., Tanuri, Amilcar, Rossi, Átila D., Braga, Carlos K.V., Gerber, Alexandra L., de C. Guimarães, Ana Paula, Gaburo, Nelson, Alencar, Cecila Salete, Ferreira, Alessandro C.S., Lima, Cristiano X., Levi, José Eduardo, Granato, Celso, Ferreira, Giulia M., Francisco, Ronaldo S., Granja, Fabiana, Garcia, Marcia T., Moretti, Maria Luiza, Perroud, Mauricio W., Castiñeiras, Terezinha M. P. P., Lazari, Carolina S., Hill, Sarah C., de Souza Santos, Andreza Aruska, Simeoni, Camila L., Forato, Julia, Sposito, Andrei C., Schreiber, Angelica Z., Santos, Magnun N. N., de Sá, Camila Zolini, Souza, Renan P., Resende-Moreira, Luciana C., Teixeira, Mauro M., Hubner, Josy, Leme, Patricia A. F., Moreira, Rennan G, Nogueira, Maurício L., Ferguson, Neil M, Costa, Silvia F., Proenca-Modena, José Luiz, Vasconcelos, Ana Tereza R., Bhatt, Samir, Lemey, Philippe, Wu, Chieh-Hsi, Rambaut, Andrew, Loman, Nick J., Aguiar, Renato S., Pybus, Oliver G., Sabino, Ester C., Faria, Nuno Rodrigues

gasparrini/ItalyCOVIDdeath. (2020) Scortichini, Matteo, Schneider dos santos, Rochelle, De' Donato, De Sario, Manuela, Michelozzi, Paola, Davoli, Marina, Masselot, Pierre, Sera, Francesco, Gasparrini, Antonio

Bridging the Gap in HIV testing and care for children in Zimbabwe (B-GAP). (2020) Dziva Chikwari, Chido description

thimotei/covid_travel_restrictions. (2020) Russell, Timothy W., Wu, Joseph T, Clifford, Samuel, CMMID COVID-19 working group, Edmunds, W John, Kucharski, Adam J., Jit, Mark

Genome-wide association studies identify 137 loci for DNA methylation biomarkers of aging. (2020) McCartney, Daniel, Min, Josine, Richmond, Rebecca, Lu, Ake, Sobczyk, Maria, Davies, Gail, Broer, Linda, Guo, Xiuqing, Jeong, Ayoung, Jung, Jeeson, Kasela, Silva, Katrinli, Seyma, Kuo, Pei-Lun, Matias-Garcia, Pamela, Mishra, Pashupati, Nygaard, Marianne, Palviainen, Teemu, Patki, Amit, Raffield, Laura, Ratliff, Scott, Richardson, Tom, Robinson, Oliver, Sorensen, Mette, Sun, Dianjianyi, Tsai, Pei-Chien, van der Zee, Matthijs, Wang, Xiaochuan, Wang, Yunzhang, Xia, Rui, Xu, Zongli, Yao, Jie, Zhao, Wei, Deary, Ian, Relton, Caroline L., Horvath, Steve, Marioni, Riccardo

Additional file 2 of Molecular detection of drug resistant polymorphisms in Plasmodium falciparum isolates from Southwest, Nigeria. (2020) Tola, Monday, Ajibola, Olumide, Idowu, Emmanuel Taiwo, Omidiji, Olusesan, Awolola, Samson Taiwo, Amambua-Ngwa, Alfred

Household Transmission of Seasonal Coronavirus Infections: Results from the Flu Watch cohort study. (2020) Beale, Sarah, Lewer, Dan, Aldridge, Robert W., Johnson, Anne M., Zambon, Maria, Hayward, Andrew, Fragaszy, Ellen

geosocial-outbreaker: Integrating geographical and social contact data to reconstruct transmission chains. (2020) Robert, Alexis

Causal Sim code. (2020) Keogh, Ruth, Seaman, Shaun R., Gran, Jon Michael, Vansteelandt, Stijn

TB Fast Track dataset. (2019) Fielding, Katherine folder_zip

Clinical Codelist - Anxiety Symptoms and Diagnoses. (2019) Carreira, Helena, Funston, Garth description

Clinical Codelist - Breast Cancer Diagnoses. (2019) Carreira, Helena, Funston, Garth description

Clinical Codelist - Cognitive Dysfunction (symptoms and diagnoses). (2019) Carreira, Helena, Funston, Garth description

Clinical Codelist - Depression (symptoms and diagnoses). (2019) Carreira, Helena, Funston, Garth description

Clinical Codelist - Fatigue (symptoms and diagnoses). (2019) Carreira, Helena, Funston, Garth description

Clinical Codelist - Fatigue Syndrome. (2019) Carreira, Helena, Funston, Garth description

Clinical Codelist - Female Sexual Dysfunction (symptoms and diagnoses). (2019) Carreira, Helena, Funston, Garth description

Clinical Codelist - Pain (broad definition). (2019) Carreira, Helena, Funston, Garth description

Clinical Codelist - Selected Anxiety Disorders. (2019) Carreira, Helena, Funston, Garth description

Clinical Codelist - Selected Depressive Disorders. (2019) Carreira, Helena, Funston, Garth description

Clinical Codelist - Selected Sexual Disorders. (2019) Carreira, Helena, Funston, Garth description

Clinical Codelist - Self-harm. (2019) Carreira, Helena, Funston, Garth description

Clinical Codelist - Sleep Disorder (symptoms and diagnoses). (2019) Carreira, Helena, Funston, Garth description

Therapy Codelist - Antidepressants. (2019) Carreira, Helena, Funston, Garth description

Therapy Codelist - Anxiety Drugs. (2019) Carreira, Helena, Funston, Garth description

Therapy Codelist - Dementia. (2019) Carreira, Helena, Funston, Garth description

Therapy Codelist - Hypnotics. (2019) Carreira, Helena, Funston, Garth description

Therapy Codelist - Opioids. (2019) Carreira, Helena, Funston, Garth description

Therapy Codelist - Opioids excluding Codeine. (2019) Carreira, Helena, Funston, Garth description

Adaptation of host transmission cycle during Clostridium difficile speciation. (2019) Kumar, Nitin, Browne, Hilary P., Viciani, Elisa, Forster, Samuel C., Clare, Simon, Harcourt, Katherine, Stares, Mark D., Dougan, Gordon, Fairley, Derek J., Roberts, Paul, Pirmohamed, Munir, Clokie, Martha R. J., Jensen, Mie Birgitte Frid, Hargreaves, Katherine R., Ip, Margaret, Wieler, Lothar H., Seyboldt, Christian, Norén, Torbjörn, Riley, Thomas V., Kuijper, Ed J., Wren, Brendan W., Lawley, Trevor D.

Summary table of the elements recorded in the 43 studies included in our review from Mathematical modelling to study the horizontal transfer of antimicrobial resistance genes in bacteria: current state of the field and recommendations. (2019) Leclerc, Quentin J., Lindsay, Jodi A., Knight, Gwenan M.

Additional file 1: of Integrating informatics tools and portable sequencing technology for rapid detection of resistance to anti-tuberculous drugs. (2019) Phelan, Jody, O’Sullivan, Denise M, Machado, Diana, Ramos, Jorge, Oppong, Yaa EA, Campino, Susana, O’Grady, Justin, McNerney, Ruth, Hibberd, Martin L, Viveiros, Miguel, Huggett, Jim F, Clark, Taane G.

Divergent roles for the RH5 complex components, CyRPA and RIPR in human-infective malaria parasites. (2019) Knuepfer, Ellen, Wright, Katherine E, Kumar Prajapati, Surendra, Rawlinson, Thomas A, Mohring, Franziska, Koch, Marion, Lyth, Oliver R, Howell, Steven A, Villasis, Elizabeth, Snijders, Ambrosius P, Moon, Robert W., Draper, Simon J, Rosanas-urgell, Anna, Higgins, Matthew K, Baum, Jake, Holder, Anthony A

An online survey of adults with cystic fibrosis: accessing and using life expectancy information. (2019) Keogh, Ruth description

BP_Body_Comp. (2019) Nsamba, Jonathan, Lule, Swaib A., Namara, Benigna, Zziwa, Christopher, Akurut, Hellen, Lubyayi, Lawrence, Akello, Florence, Tumusiime, Josephine, Elliott, Alison M., Webb, Emily L.

Mortality predictor score in hospitalised patients HIV-associated TB in Africa dataset. (2019) Gupta-Wright, Ankur html

Clinical and laboratory-induced colistin-resistance mechanisms in Acinetobacter baumannii. (2019) Boinett, Christine J., Cain, Amy K., Hawkey, Jane, Do Hoang, Nhu Tran, Khanh, Nhu Nguyen Thi, Thanh, Duy Pham, Dordel, Janina, Campbell, James I., Lan, Nguyen Phu Huong, Mayho, Matthew, Langridge, Gemma C., Hadfield, James, Chau, Nguyen Van Vinh, Thwaites, Guy E., Parkhill, Julian, Thomson, Nicholas R., Holt, Kathryn E., Baker, Stephen

outbreaker2: Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data. (2018) Jombart, Thibaut, Campbell, Finlay, Fitzjohn, Richard

Safety of discontinuing cotrimoxazole prophylaxis among HIV infected adults stabilized on ART in Uganda: randomised controlled trial. (2018) Anywaine, Zacchaeus, Levin, Jonathan, Abaasa, Andrew, Nunn, Andrew, Grosskurth, Heiner, Munderi, Paula folder_zip

Screening tool to identify adolescents living with HIV in a community setting in Zimbabwe: A validation study. (2018) Bandason, Tsitsi, Dauya, Ethel, Dakshina, Subathira, McHugh, Grace, Chonzi, Prosper, Munyati, Shungu, Weiss, Helen A., Simms, Victoria, Kranzer, Katharina, Ferrand, Rashida Abbas

Hospitalisations and outpatient visits for undifferentiated fever attributable to scrub typhus in rural south india: retrospective cohort and nested case-control study. (2018) Schmidt, Wolf-Peter html

Additional file 1: of Identifying mixed Mycobacterium tuberculosis infections from whole genome sequence data. (2018) Sobkowiak, Benjamin, Glynn, Judith R., Houben, Rein M. G. J., Mallard, Kim, Phelan, Jody E., Guerra-Assunção, José Afonso, Banda, Louis, Mzembe, Themba, Viveiros, Miguel, McNerney, Ruth, Parkhill, Julian, Crampin, Amelia C., Clark, Taane G.

Reported contacts dataset for "Structure and consistency of self-reported social contact networks in British secondary schools". (2018) Kucharski, Adam J., Wenham, Clare, Brownlee, Polly, Racon, Lucie, Widmer, Natasha, Eames, Ken T. D., Conlan, Andrew J. K.

Dataset for: Hepcidin in Tanzanian children with sickle cell disease. (2018) Cox, Sharon, Makani, Julie, Lee, Nathan, Sangeda, Raphael html

HIV Combination Prevention study - Data at months 0, 9 and 15. (2018) Kuteesa, Monica O., Weiss, Helen, Abaasa, Andrew, Nsubuga, Rebecca N., Newton, Rob, Seeley, Janet, Kamali, A description

MI-TVE. (2018) Keogh, Ruth

Clinical code list - Alcohol. (2018) Farmer, Ruth, Douglas, Ian J. description

Clinical code list - Cancer. (2018) Bhaskaran, Krishnan, Farmer, Ruth description

Clinical code list - Cardiovascular disease. (2018) Farmer, Ruth description

Clinical code list - Chronic kidney disease. (2018) Farmer, Ruth description

Clinical code list - Diabetes care related codes. (2018) Eastwood, Sophie V., Mathur, Rohini, Farmer, Ruth description

Clinical code list - Diabetes diagnoses. (2018) Eastwood, Sophie V., Mathur, Rohini, Farmer, Ruth description

MI-CC. (2018) Keogh, Ruth

Identification and validation of a novel panel of Plasmodium knowlesi biomarkers of serological exposure. (2018) Herman, Lou S., Fornace, Kimberly, Phelan, Jody, Grigg, Matthew J., Anstey, Nicholas M., William, Timothy, Moon, Robert W., Blackman, Michael J., Drakeley, Chris J., Tetteh, Kevin K. A.

treespace: exploration of landscapes of phylogenetic trees. (2018) Jombart, Thibaut, Kendall, Michelle, Almagro-Garcia, Jacob, Colijn, Caroline

Global analysis of Plasmodium falciparum histidine-rich protein-2 ( pfhrp2 ) and pfhrp3 gene deletions using whole-genome sequencing data and meta-analysis. (2018) Sepúlveda, Nuno, Phelan, Jody, Diez-Benavente, Ernest, Campino, Susana, Clark, Taane G., Hopkins, Heidi, Sutherland, Colin, Drakeley, Chris J., Beshir, Khalid B.

Data for: "From kitchen to classroom: Assessing the impact of cleaner burning biomass-fuelled cookstoves on primary school attendance in Karonga district, northern Malawi". (2018) Kelly, Christine, Dube, Albert, Mortimer, Kevin description

Anonymised study dataset for: "Cost-effectiveness of prenatal food and micronutrient interventions on under-five mortality and stunting: Analysis of data from the MINIMat randomized trial, Bangladesh". (2018) Svefors, Pernilla, Selling, Katarina Ekholm, Shaheen, Rubina, Khan, Ashraful Islam, Persson, Lars Ake, Lindholm, Lars

Decoding the network of Trypanosoma brucei proteins that determines sensitivity to apolipoprotein-L1. (2018) Currier, Rachel B., Cooper, Anneli, Burrell-saward, Hollie, MacLeod, Annette, Alsford, Sam

Data for: "Menstrual health and school absenteeism among adolescent girls in Uganda (MENISCUS): feasibility study". (2018) Weiss, Helen, Nakinyingi-Miiro, Jessica, Sembajjwe, Wilber folder_zip

Data for: "Does azithromycin given to women in labour decrease ocular bacterial infection in neonates? A double-blind, randomized trial". (2017) Burr, Sarah E., Camara, Bully, Oluwalana, Claire, Bojang, Ebrima, Bottomley, Christian, Bojang, Abdoulie, Bailey, Robin L., D'Alessandro, Umberto, Roca, Anna description

Social mixing in Fiji: Who-eats-with-whom contact patterns and the implications of age and ethnic heterogeneity for disease dynamics in the Pacific Islands. (2017) Watson, Conall H., Coriakula, Jeremaia, Ngoc, Dung Tran Thi, Flasche, Stefan, Kucharski, Adam J., Lau, Colleen L., Thieu, Nga Tran Vu, le Polain de Waroux, Olivier, Rawalai, Kitione, Van, Tan Trinh, Taufa, Mere, Baker, Stephen, Nilles, Eric J., Kama, Mike, Edmunds, W. John

Association between the 2012 Health and Social Care Act and specialist visits and hospitalisations in England: A controlled interrupted time series analysis. (2017) Lopez-Bernal, James, Lu, Christine Y., Gasparrini, Antonio, Cummins, Steven, Wharham, J. Frank, Soumerai, Steven B.

Model code for "An explanation for the low proportion of tuberculosis that results from transmission between household and known social contacts". (2017) Mccreesh, Nicky description

Search strategies for "Evidence for the use of administrative controls to reduce the transmission of Mycobacterium tuberculosis in healthcare settings: a systematic review". (2017) Falconer, Jane description

Perceptions about interventions to control schistosomiasis among the Lake Victoria island communities of Koome, Uganda. (2017) Sanya, Richard E., Tumwesige, Edward, Elliott, Alison M., Seeley, Janet

R code: why sensitive bacteria are resistant to hospital infection control. (2017) van Kleef, Esther, Luangasanatip, Nantasit, Bonten, Marc JM, Cooper, Ben S

Analysis of nuclear and organellar genomes of Plasmodium knowlesi in humans reveals ancient population structure and recent recombination among host-specific subpopulations. (2017) Diez Benavente, Ernest, Florez de Sessions, Paola, Moon, Robert W., Holder, Anthony A., Blackman, Michael J., Roper, Cally, Drakeley, Christopher J., Pain, Arnab, Sutherland, Colin J., Hibberd, Martin L., Campino, Susana, Clark, Taane G.

MENISCUS SMC dataset. (2017) Weiss, Helen, Nakinyingi-Miiro, Jessica, Sembajjwe, Wilber, Gibson, Lorna folder_zip

The emerging GII.P16-GII.4 Sydney 2012 norovirus lineage is circulating worldwide, arose by late-2014 and contains polymerase changes that may increase virus transmission. (2017) Ruis, Christopher, Roy, Sunando, Brown, Julianne R., Allen, David J., Goldstein, Richard A., Breuer, Judith

Data from a study of Guinea worm infection in northern Nigeria, 1971-1974. (2017) Greenwood, Brian, Greenwood, Alice, Bradley, Andrew description

Selected interview transcript quotes from: "A reconfiguration of the sex trade: How social and structural changes in eastern Zimbabwe left women involved in sex work and transactional sex more vulnerable". (2017) Elmes, Jocelyn, Skovdal, Morten, Nhongo, Kundai, Ward, Helen, Campbell, Catherine, Hallett, Timothy B., Nyamukapa, Constance, White, Peter J., Gregson, Simon

Primary macrophages and J774 cells respond differently to infection with Mycobacterium tuberculosis. (2017) Andreu, Nuria, Phelan, Jody, de Sessions, Paola F, Cliff, Jackie M., Clark, Taane, Hibberd, Martin

gasparrini/2014_gasparrini_BMCmrm_Rcodedata. (2017) Gasparrini, Antonio, Leone, Michela

R code and data for: "A penalized framework for distributed lag non-linear models". (2017) Gasparrini, Antonio, Scheipl, Fabian, Armstrong, Ben, Kenward, Mike

Ecological Study of HIV Infection and Hypertension in Sub-Saharan Africa: Is There a Double Burden of Disease? (2016) Angkurawaranon, C., Nitsch, Dorothea, Larke, Natasha, Rehman, Andrea M., Smeeth, Liam, Addo, Juliet

High Throughput Screening Identifies Novel Lead Compounds with Activity against Larval, Juvenile and Adult Schistosoma mansoni. S2 Table. (2016) Mansour, Nuha R., Paveley, Ross, Gardner, J. Mark F., Bell, Andrew S., Parkinson, Tanya, Bickle, Quentin grid_on

Collection tools for: "Community readiness for adolescents’ overweight and obesity prevention is low in urban South Africa: a case study". (2016) Pradeilles, Rebecca, Rousham, Emily K., Norris, Shane A., Kesten, Joanna M., Griffiths, Paula L. description

Genome-scale comparison of expanded gene families in Plasmodium ovale wallikeri and Plasmodium ovale curtisi with Plasmodium malariae and with other Plasmodium species. (2016) Ansari, Hifzur Rahman, Templeton, Thomas J., Subudhi, Amit Kumar, Ramaprasad, Abhinay, Tang, Jianxia, Lu, Feng, Naeem, Raeece, Hashish, Yasmeen, Oguike, Mary C., Benavente, Ernest Diez, Clark, Taane G., Sutherland, Colin J., Barnwell, John W., Culleton, Richard, Cao, Jun, Pain, Arnab

The Prevalence of Scabies and Impetigo in the Solomon Islands: A Population-Based Survey. (2016) Mason, Daniel S., Marks, Michael, Sokana, Oliver, Solomon, Anthony W., Mabey, David C., Romani, Lucia, Kaldor, John, Steer, Andrew C., Engelman, Daniel

Host Immune Responses Differ between M. africanum- and M. tuberculosis-Infected Patients following Standard Anti-tuberculosis Treatment. (2016) Tientcheu, Leopold, Haks, Mariëlle C., Agbla, Schadrac, Sutherland, Jayne, Adetifa, Ifedayo, Donkor, Simon, Quinten, Edwin, Daramy, Mohammed, Antonio, Martin, Kampmann, Beate, Ottenhoff, Tom H. M., Dockrell, Hazel, Ota, Martin O.

S1 Dataset for "Transmission Dynamics of Zika Virus in Island Populations: A Modelling Analysis of the 2013–14 French Polynesia Outbreak". (2016) Kucharski, Adam J., Funk, Sebastian, Eggo, Rosalind M., Mallet, Henri-Pierre, Edmunds, W. John, Nilles, Eric J. description

High Throughput Screening Identifies Novel Lead Compounds with Activity against Larval, Juvenile and Adult Schistosoma mansoni. S1 Table. (2016) Mansour, Nuha R., Paveley, Ross, Gardner, J. Mark F., Bell, Andrew S., Parkinson, Tanya, Bickle, Quentin grid_on

Multiple imputation methods for bivariate outcomes in cluster randomised trials: Supporting Information. (2016) Diaz-ordaz, Karla, Kenward, Mike, Gomes, Manuel, Grieve, Richard description

Validation of the Recording of Acute Exacerbations of COPD in UK Primary Care Electronic Healthcare Records. (2016) Chotirmall, Sanjay Haresh, Rothnie, Kieran, Müllerová, Hana, Hurst, John R., Smeeth, Liam, Davis, Kourtney, Thomas, Sara L, Quint, Jennifer description

MINIMat data. (2016) Carpenter, David O., Svefors, Pernilla, Rahman, Anisur, Ekström, Eva-Charlotte, Khan, Ashraful Islam, Lindström, Emma, Persson, Lars Ake, Ekholm Selling, Katarina

P. knowlesi DHFR sequence data. (2016) Tsuboi, Takafumi, Grigg, Matthew, Barber, Bridget E., Marfurt, Jutta, Imwong, Mallika, William, Timothy, Bird, Elspeth, Piera, Kim A., Aziz, Ammar, Boonyuen, Usa, Drakeley, Chris, Cox, Jonathan, White, Nicholas J., Cheng, Qin, Yeo, Tsin W., Auburn, Sarah, Anstey, Nicholas M. description

Low Ambient Temperature and Intracerebral Hemorrhage: The INTERACT2 Study. S1 Table. (2016) Wang, Xiaoying, Zheng, Danni, Arima, Hisatomi, Sato, Shoichiro, Gasparrini, Antonio, Heeley, Emma, Delcourt, Candice, Lo, Serigne, Huang, Yining, Wang, Jiguang, Stapf, Christian, Robinson, Thompson, Lavados, Pablo, Chalmers, John, Anderson, Craig S.

Evidence for Community Transmission of Community-Associated but Not Health-Care-Associated Methicillin-Resistant Staphylococcus Aureus Strains Linked to Social and Material Deprivation: Spatial Analysis of Cross-sectional Data. (2016) Kretzschmar, Mirjam E. E., Tosas Auguet, Olga, Betley, Jason R., Stabler, Richard, Patel, Amita, Ioannou, Avgousta, Marbach, Helene, Hearn, Pasco, Aryee, Anna, Goldenberg, Simon D., Otter, Jonathan A., Desai, Nergish, Karadag, Tacim, Grundy, Chris, Gaunt, Michael, Cooper, Ben S., Edgeworth, Jonathan D., Kypraios, Theodore

The Ecological Dynamics of Fecal Contamination and Salmonella Typhi and Salmonella Paratyphi A in Municipal Kathmandu Drinking Water. S2 Dataset. (2016) Karkey, Abhilasha, Jombart, Thibaut, Walker, Alan W., Thompson, Corinne N., Torres, Andres, Dongol, Sabina, Tran Vu Thieu, Nga, Pham Thanh, Duy, Tran Thi Ngoc, Dung, Voong Vinh, Phat, Singer, Andrew C., Parkhill, Julian, Thwaites, Guy, Basnyat, Buddha, Ferguson, Neil, Baker, Stephen

Data for: "Immune activation in the female genital tract: Expression profiles of soluble proteins in women at high risk for HIV infection". (2015) Francis, Suzanna C, Hou, Yanwen, Baisley, Kathy, Van de wijgert, Janneke, Watson-Jones, Deborah, Ao, Trong T, Herrera, Carolina, Maganja, Kaballa, Andreasen, Aura, Coulton, Gary R, Hayes, Richard J, Shattock, Robin J description

Data for: "Anemia, Blood Transfusion Requirements and Mortality Risk in Human Immunodeficiency Virus-Infected Adults Requiring Acute Medical Admission to Hospital in South Africa". (2015) Kerkhoff, Andrew D, Lawn, Stephen, Schutz, Charlotte, Burton, Rosie, Boulle, Andrew, Cobelens, Frank J, Meintjes, Graeme

Chronic Diseases in North-West Tanzania and Southern Uganda. Public Perceptions of Terminologies, Aetiologies, Symptoms and Preferred Management. (2015) Nnko, Soori, Bukenya, Dominic, Kavishe, Bazil Balthazar, Biraro, Samuel, Peck, Robert, Kapiga, Saidi, Grosskurth, Heiner, Seeley, Janet

Whole genome sequences for M.tuberculosis isolates from the TDR strain bank. (2015) Phelan, Jody, Coll, Francesc, Mcnerney, Ruth, Ascher, David B., Pires, Douglas E. V., Furnham, Nick, Coeck, Nele, Hill-Cawthorne, Grant A., Nair, Mridul B., Mallard, Kim, Ramsay, Andrew, Campino, Susana, Hibberd, Martin, Pain, Arnab, Rigouts, Leen, Clark, Taane description

Modulation of the Surface Proteome through Multiple Ubiquitylation Pathways in African Trypanosomes: Supporting Information. (2015) Zoltner, Martin, Leung, Ka Fai, Alsford, Sam, Horn, David, Field, Mark C

National Survey of Sexual Attitudes and Lifestyles, 2010-2012. (2015) Johnson, Anne

Evidence for negative selection of gene variants that increase dependence on dietary choline in a Gambian cohort: Supplemental Data. (2015) Silver, Matt, Corbin, K. D., Hellenthal, G., da Costa, K.-A., Dominguez-salas, Paula, Moore, Sophie, Owen, J., Prentice, Andrew, Hennig, Branwen, Zeisel, S. H.

Cycle training for children: Which schools offer it and who takes part? (2015) Goodman, Anna, van Sluijs, Esther M.F., Ogilvie, David

Glitazone Treatment and Incidence of Parkinson’s Disease among People with Diabetes: A Retrospective Cohort Study. (2015) Brauer, Ruth, Bhaskaran, Krishnan, Chaturvedi, Nishi, Dexter, David T, Smeeth, Liam, Douglas, Ian

School's Out: Seasonal Variation in the Movement Patterns of School Children. S1 Dataset. Reported individual travel patterns. (2015) Kucharski, Adam, Conlan, Andrew J. K., Eames, Ken grid_on

Screening and treatment of malaria in pregnancy in West Africa. (2015) Cairns, Matthew, Woukeu, Arouna, Tagbor, Harry

PhyloTrack. (2015) Benavente, Ernest, Coll, Francesc, Furnham, Nick, Mcnerney, Ruth, Glynn, Judith, Campino, Susana, Pain, Arnab, Mohareb, Fady R, Clark, Taane

Genome-wide analysis of selection on the malaria parasite Plasmodium falciparum in West African populations of differing infection endemicity: Supplementary data. (2015) Mobegi, Victor, Duffy, Craig, Amambua-Ngwa, Alfred, Loua, Kovana M, Laman, Eugene, Nwakanma, Davis C, MacInnis, Bronwyn, Aspeling-jones, Harvey, Murray, Lee, Clark, Taane, Kwiatkowski, Dominic P, Conway, David grid_on

Data from: Distinguishing between reservoir exposure and human-to-human transmission for emerging pathogens using case onset data. (2015) Kucharski, Adam, Mills, Harriet, Pinsent, Amy, Fraser, Christophe, Kerkhove, Maria Van, Riley, Steven

A Cross-Sectional Study of ‘Yaws’ in Districts of Ghana Which Have Previously Undertaken Azithromycin Mass Drug Administration for Trachoma Control. Study dataset. (2015) Ghinai, Rosanna, El-Duah, Philip, Chi, Kai-Hua, Pillay, Allan, Solomon, Anthony W., Bailey, Robin, Agana, Nsiire, Mabey, David, Chen, Cheng-Yen, Adu-Sarkodie, Yaw, Marks, Michael

Staphylococcus Aureus BSAC study data. (2015) Reuter, Sandra, Török, M. Estée, Holden, Matthew T.G., Reynolds, Rosy, Raven, Kathy E., Blane, Beth, Donker, Tjibbe, Bentley, Stephen D., Aanensen, David M., Grundmann, Hajo, Feil, Edward J., Spratt, Brian G., Parkhill, Julian, Peacock, Sharon

Generation of Antigenic Diversity in Plasmodium falciparum by Structured Rearrangement of Var Genes During Mitosis. (2014) Claessens, Antoine, Hamilton, William L, Kekre, Mihir, Otto, Thomas D, Faizullabhoy, Adnan, Rayner, Julian C, Kwiatkowski, Dominic

Potential for large outbreaks of Ebola virus disease: Supplementary Data. (2014) Camacho, Anton, Kucharski, Adam, Funk, Sebastian, Breman, J, Piot, Peter, Edmunds, John

Social conditions and disability related to the mortality of older people in rural South Africa: Supplementary Data. (2014) Gómez-Olivé, F Xavier, Thorogood, Margaret, Bocquier, Philippe, Mee, Paul, Kahn, Kathleen, Berkman, Lisa, Tollman, Stephen

Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data. (2014) Jombart, Thibaut, Cori, Anne, Didelot, Xavier, Cauchemez, Simon, Fraser, Christophe, Ferguson, Neil

Genomic Characterisation of Invasive Non-Typhoidal Salmonella enterica Subspecies enterica Serovar Bovismorbificans Isolates from Malawi. (2013) Bronowski, Christina, Fookes, Maria C., Gilderthorp, Ruth, Ashelford, Kevin E., Harris, Simon R., Phiri, Amos, Hall, Neil, Gordon, Melita A., Wain, John, Hart, Charles A., Wigley, Paul, Thomson, Nicholas R., Winstanley, Craig

Phase Ia clinical evaluation of the safety and immunogenicity of the Plasmodium falciparum blood-stage antigen AMA1 in ChAd63 and MVA vaccine vectors. (2012) Sheehy, Susanne H, Duncan, Christopher J. A., Elias, Sean C., Biswas, Sumi, Collins, Katharine A., O'hara, Geraldine, Halstead, Fenella D., Ewer, Katie J., Mahungu, Tabitha, Spencer, Alexandra J., Miura, Kazutoyo, Poulton, Ian D., Dicks, Matthew D. J., Edwards, Nick J., Berrie, Eleanor, Moyle, Sarah, Colloca, Stefano, Cortese, Riccardo, Gantlett, Katherine, Long, Carole A., Lawrie, Alison M., Gilbert, Sarah C., Doherty, Tom, Nicosia, Alfredo, Hill, Adrian V. S., Draper, Simon J.

Quality of Life among People Aged 75 and over in Great Britain, 1994-1998. (2006) Breeze, Elizabeth, Wilkinson, Paul, Fletcher, Astrid, Bulpitt, C, Jones, D, Tulloch, A

CRASH - Corticosteroid Randomisation after Significant Head Injury. (2005) CRASH Trial Collaborators