Cairns, M, Thera, I, Dicko, A, Ouedraogo, J, Chandramohan, D and Greenwood, B (2020). Data for AZ-SMC - a trial of seasonal malaria chemoprevention combined with azithromycin in African children. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Robert, A (2020). geosocial-outbreaker: Integrating geographical and social contact data to reconstruct transmission chains. [Data Collection]. Github. https://github.com/alxsrobert/o2geosocial

Keogh, R, Seaman, SR, Gran, JM and Vansteelandt, S (2020). Causal Sim code. [Data Collection]. Github. https://github.com/ruthkeogh/causal_sim

O'hara, G, Mokaya, J, Hau, JP, Downs, LO, McNaughton, AL, Karabarinde, A, Asiki, G, Seeley, J, Matthews, PC and Newton, R (2020). Liver function tests and fibrosis scores in a rural population in Africa. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.8292194

Carreira, H and Funston, G (2019). Clinical Codelist - Anxiety Symptoms and Diagnoses. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001397.

Carreira, H and Funston, G (2019). Clinical Codelist - Breast Cancer Diagnoses. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001396.

Carreira, H and Funston, G (2019). Clinical Codelist - Cognitive Dysfunction (symptoms and diagnoses). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001417.

Carreira, H and Funston, G (2019). Clinical Codelist - Depression (symptoms and diagnoses). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001400.

Carreira, H and Funston, G (2019). Clinical Codelist - Fatigue (symptoms and diagnoses). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001419.

Carreira, H and Funston, G (2019). Clinical Codelist - Fatigue Syndrome. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001420.

Carreira, H and Funston, G (2019). Clinical Codelist - Female Sexual Dysfunction (symptoms and diagnoses). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001426.

Carreira, H and Funston, G (2019). Clinical Codelist - Pain (broad definition). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001423.

Carreira, H and Funston, G (2019). Clinical Codelist - Selected Anxiety Disorders. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001398.

Carreira, H and Funston, G (2019). Clinical Codelist - Selected Depressive Disorders. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001401.

Carreira, H and Funston, G (2019). Clinical Codelist - Selected Sexual Disorders. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001427.

Carreira, H and Funston, G (2019). Clinical Codelist - Self-harm. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001428.

Carreira, H and Funston, G (2019). Clinical Codelist - Sleep Disorder (symptoms and diagnoses). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001421.

Carreira, H and Funston, G (2019). Therapy Codelist - Antidepressants. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001402.

Carreira, H and Funston, G (2019). Therapy Codelist - Anxiety Drugs. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001399.

Carreira, H and Funston, G (2019). Therapy Codelist - Dementia. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001418.

Carreira, H and Funston, G (2019). Therapy Codelist - Hypnotics. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001422.

Carreira, H and Funston, G (2019). Therapy Codelist - Opioids. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001424.

Carreira, H and Funston, G (2019). Therapy Codelist - Opioids excluding Codeine. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001425.

Kumar, N, Browne, HP, Viciani, E, Forster, SC, Clare, S, Harcourt, K, Stares, MD, Dougan, G, Fairley, DJ, Roberts, P, Pirmohamed, M, Clokie, MRJ, Jensen, MBF, Hargreaves, KR, Ip, M, Wieler, LH, Seyboldt, C, Norén, T, Riley, TV, Kuijper, EJ, Wren, BW and Lawley, TD (2019). Adaptation of host transmission cycle during Clostridium difficile speciation. [Data Collection]. Nature Genetics. https://doi.org/10.1038/s41588-019-0478-8

Georgiadou, A, Lee, HJ, Walther, M, van Beek, AE, Fitriani, F, Wouters, D, Kuijpers, TW, Nwakanma, D, Dalessandro, U, Riley, E, Otto, TD, Ghani, A, Levin, M, Coin, LJ, Conway, DJ, Bretscher, MT and Cunnington, AJ (2019). Modelling pathogen load dynamics to elucidate mechanistic determinants of host–Plasmodium falciparum interactions. [Data Collection]. Nature Microbiology. https://doi.org/10.1038/s41564-019-0474-x

Knuepfer, E, Wright, KE, Kumar Prajapati, S, Rawlinson, TA, Mohring, F, Koch, M, Lyth, OR, Howell, SA, Villasis, E, Snijders, AP, Moon, RW, Draper, SJ, Rosanas-urgell, A, Higgins, MK, Baum, J and Holder, AA (2019). Divergent roles for the RH5 complex components, CyRPA and RIPR in human-infective malaria parasites. [Data Collection]. PLOS Pathogens. https://doi.org/10.1371/journal.ppat.1007809

Ashton, P, Thanh, L, Trieu, P, Van Anh, D, Trinh, N, Beardsley, J, Kibengo, F, Chierakul, W, Dance, D, Rattanavong, S, Davong, V, Hung, L, Chau, N, Tung, N, Chan, A, Thwaites, G, Lalloo, D, Anscombe, C, Nhat, L, Perfect, J, Dougan, G, Baker, S, Harris, S and Day, J (2019). Three phylogenetic groups have driven the recent population expansion of Cryptococcus neoformans. [Data Collection]. Nature Communications. https://doi.org/10.1038/s41467-019-10092-5

Boinett, CJ, Cain, AK, Hawkey, J, Do Hoang, NT, Khanh, NNT, Thanh, DP, Dordel, J, Campbell, JI, Lan, NPH, Mayho, M, Langridge, GC, Hadfield, J, Chau, NVV, Thwaites, GE, Parkhill, J, Thomson, NR, Holt, KE and Baker, S (2019). Clinical and laboratory-induced colistin-resistance mechanisms in Acinetobacter baumannii. [Data Collection]. Microbial genomics. https://doi.org/10.1099/mgen.0.000246

Jombart, T, Campbell, F and Fitzjohn, R (2018). outbreaker2: Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data. [Data Collection]. The Comprehensive R Archive Network. https://CRAN.R-project.org/package=outbreaker2

Anywaine, Z, Levin, J, Abaasa, A, Nunn, A, Grosskurth, H and Munderi, P (2018). Safety of discontinuing cotrimoxazole prophylaxis among HIV infected adults stabilized on ART in Uganda: randomised controlled trial. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000917.

Bandason, T, Dauya, E, Dakshina, S, McHugh, G, Chonzi, P, Munyati, S, Weiss, HA, Simms, V, Kranzer, K and Ferrand, RA (2018). Screening tool to identify adolescents living with HIV in a community setting in Zimbabwe: A validation study. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0204891.s001.

Schmidt, W (2018). Hospitalisations and outpatient visits for undifferentiated fever attributable to scrub typhus in rural south india: retrospective cohort and nested case-control study. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001025.

Sobkowiak, B, Glynn, JR, Houben, Rein M. G. J., Mallard, K, Phelan, JE, Guerra-Assunção, JA, Banda, L, Mzembe, T, Viveiros, M, McNerney, R, Parkhill, J, Crampin, AC and Clark, TG (2018). Additional file 1: of Identifying mixed Mycobacterium tuberculosis infections from whole genome sequence data. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.6968636.v1

Kucharski, AJ, Wenham, C, Brownlee, P, Racon, L, Widmer, N, Eames, KTD and Conlan, AJK (2018). Reported contacts dataset for "Structure and consistency of self-reported social contact networks in British secondary schools". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.1371/journal.pone.0200090.s002

Cox, S, Makani, J, Lee, N and Sangeda, R (2018). Dataset for: Hepcidin in Tanzanian children with sickle cell disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000781.

Gon, G (2018). Data for "HANDS project - Hand-hygiene of Attendants for Newborn Deliveries and Survival". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000778.

Farmer, R and Douglas, IJ (2018). Clinical code list - Alcohol. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000717.

Bhaskaran, K and Farmer, R (2018). Clinical code list - Cancer. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000716.

Farmer, R (2018). Clinical code list - Cardiovascular disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000719.

Farmer, R (2018). Clinical code list - Chronic kidney disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000718.

Eastwood, SV, Mathur, R and Farmer, R (2018). Clinical code list - Diabetes care related codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000721.

Eastwood, SV, Mathur, R and Farmer, R (2018). Clinical code list - Diabetes diagnoses. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000720.

Herman, LS, Fornace, K, Phelan, J, Grigg, MJ, Anstey, NM, William, T, Moon, RW, Blackman, MJ, Drakeley, CJ and Tetteh, KKA (2018). Identification and validation of a novel panel of Plasmodium knowlesi biomarkers of serological exposure. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0006457

Jombart, T, Kendall, M, Almagro-Garcia, J and Colijn, C (2018). treespace: exploration of landscapes of phylogenetic trees. [Data Collection]. Github. https://thibautjombart.github.io/treespace/

Sepúlveda, N, Phelan, J, Diez-Benavente, E, Campino, S, Clark, TG, Hopkins, H, Sutherland, C, Drakeley, CJ and Beshir, KB (2018). Global analysis of Plasmodium falciparum histidine-rich protein-2 ( pfhrp2 ) and pfhrp3 gene deletions using whole-genome sequencing data and meta-analysis. [Data Collection]. Infection, Genetics and Evolution. https://doi.org/10.1016/j.meegid.2018.04.039

Kelly, C, Dube, A and Mortimer, K (2018). Data for: "From kitchen to classroom: Assessing the impact of cleaner burning biomass-fuelled cookstoves on primary school attendance in Karonga district, northern Malawi". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.282.

Svefors, P, Selling, KE, Shaheen, R, Khan, AI, Persson, LÅ and Lindholm, L (2018). Cost-effectiveness of prenatal food and micronutrient interventions on under-five mortality and stunting: Analysis of data from the MINIMat randomized trial, Bangladesh. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0191260.s002

Currier, RB, Cooper, A, Burrell-saward, H, MacLeod, A and Alsford, S (2018). Decoding the network of Trypanosoma brucei proteins that determines sensitivity to apolipoprotein-L1. [Data Collection]. Figshare. https://doi.org/10.1371/journal.ppat.1006855

Weiss, H, Nakinyingi-Miiro, J and Sembajjwe, W (2018). Data for: "Menstrual health and school absenteeism among adolescent girls in Uganda (MENISCUS): feasibility study". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.275.

Burr, SE, Camara, B, Oluwalana, C, Bojang, E, Bottomley, C, Bojang, A, Bailey, RL, D’alessandro, U and Roca, A (2017). Data for: "Does azithromycin given to women in labour decrease ocular bacterial infection in neonates? A double-blind, randomized trial". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000626.

Watson, CH, Coriakula, J, Ngoc, DTT, Flasche, S, Kucharski, AJ, Lau, CL, Thieu, NTV, le Polain de Waroux, O, Rawalai, K, Van, TT, Taufa, M, Baker, S, Nilles, EJ, Kama, M and Edmunds, WJ (2017). Social mixing in Fiji: Who-eats-with-whom contact patterns and the implications of age and ethnic heterogeneity for disease dynamics in the Pacific Islands. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0186911

Mccreesh, N (2017). Model code for "An explanation for the low proportion of tuberculosis that results from transmission between household and known social contacts". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.283.

Falconer, J (2017). Search strategies for "Evidence for the use of administrative controls to reduce the transmission of Mycobacterium tuberculosis in healthcare settings: a systematic review". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001020.

Sanya, RE, Tumwesige, E, Elliott, AM and Seeley, J (2017). Perceptions about interventions to control schistosomiasis among the Lake Victoria island communities of Koome, Uganda. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0005982

van Kleef, E, Luangasanatip, N, Bonten, MJ and Cooper, BS (2017). R code: why sensitive bacteria are resistant to hospital infection control. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.5281/zenodo.1045530

Diez Benavente, E, Florez de Sessions, P, Moon, RW, Holder, AA, Blackman, MJ, Roper, C, Drakeley, CJ, Pain, A, Sutherland, CJ, Hibberd, ML, Campino, S and Clark, TG (2017). Analysis of nuclear and organellar genomes of Plasmodium knowlesi in humans reveals ancient population structure and recent recombination among host-specific subpopulations. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pgen.1007008

Weiss, H, Nakinyingi-Miiro, J, Sembajjwe, W and Gibson, L (2017). MENISCUS SMC dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.208.

Ruis, C, Roy, S, Brown, JR, Allen, DJ, Goldstein, RA and Breuer, J (2017). The emerging GII.P16-GII.4 Sydney 2012 norovirus lineage is circulating worldwide, arose by late-2014 and contains polymerase changes that may increase virus transmission. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0179572

Senior, M, Russell, M and NatCen Social Research (2017). National Survey of Sexual Attitudes and Lifestyles, 2010-2012: Biological Data: Secure Access. [Data Collection]. UK Data Service. http://doi.org/10.5255/UKDA-SN-8179-1

Johnson, A and Mercer, C (2017). National Survey of Sexual Attitudes and Lifestyles, 2010-2012: Secure Access. [Data Collection]. UK Data Service, Colchester, Essex, United Kingdom. http://doi.org/10.5255/UKDA-SN-8178-1

Greenwood, B, Greenwood, A and Bradley, A (2017). Data from a study of Guinea worm infection in northern Nigeria, 1971-1974. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.134.

Elmes, J, Skovdal, M, Nhongo, K, Ward, H, Campbell, C, Hallett, TB, Nyamukapa, C, White, PJ and Gregson, S (2017). Selected interview transcript quotes from: "A reconfiguration of the sex trade: How social and structural changes in eastern Zimbabwe left women involved in sex work and transactional sex more vulnerable". [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0171916.s001

Andreu, N, Phelan, J, de Sessions, PF, Cliff, JM, Clark, T and Hibberd, M (2017). Primary macrophages and J774 cells respond differently to infection with Mycobacterium tuberculosis. [Data Collection]. Gene Expression Omnibus. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE88801

Lopez-Bernal, J, Cummins, S and Gasparrini, A (2017). R and STATA code for: "Interrupted time series regression for the evaluation of public health interventions: a tutorial". [Data Collection]. GitHub. http://www.ag-myresearch.com/2017_lopezbernal_ije.html

Gasparrini, A and Leone, M (2017). attrdl.Rd: Attributable Risk from a DLNM. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://github.com/gasparrini/2014_gasparrini_BMCmrm_Rcodedata

Gasparrini, A, Scheipl, F, Armstrong, B and Kenward, M (2017). R code and data for: "A penalized framework for distributed lag non-linear models". [Data Collection]. Github. https://github.com/gasparrini/2017_gasparrini_Biomet_Rcodedata

Angkurawaranon, C, Nitsch, D, Larke, N, Rehman, AM, Smeeth, L and Addo, J (2016). Ecological Study of HIV Infection and Hypertension in Sub-Saharan Africa: Is There a Double Burden of Disease? [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0166375.

Pradeilles, R, Rousham, EK, Norris, SA, Kesten, JM and Griffiths, PL (2016). Community readiness for adolescents’ overweight and obesity prevention is low in urban South Africa: a case study. [Data Collection]. BMC Public Health. https://doi.org/10.1186/s12889-016-3451-9.

Ansari, HR, Templeton, TJ, Subudhi, AK, Ramaprasad, A, Tang, J, Lu, F, Naeem, R, Hashish, Y, Oguike, MC, Benavente, ED, Clark, TG, Sutherland, CJ, Barnwell, JW, Culleton, R, Cao, J and Pain, A (2016). Genome-scale comparison of expanded gene families in Plasmodium ovale wallikeri and Plasmodium ovale curtisi with Plasmodium malariae and with other Plasmodium species. [Data Collection]. International Journal for Parasitology. https://doi.org/10.1016/j.ijpara.2016.05.009.

Mason, DS, Marks, M, Sokana, O, Solomon, AW, Mabey, DC, Romani, L, Kaldor, J, Steer, AC and Engelman, D (2016). The Prevalence of Scabies and Impetigo in the Solomon Islands: A Population-Based Survey. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0004803.

Rees, CP, Hawkesworth, S, Moore, SE, Dondeh, BL and Unger, SA (2016). Factors Affecting Access to Healthcare: An Observational Study of Children under 5 Years of Age Presenting to a Rural Gambian Primary Healthcare Centre. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0157790.

Tientcheu, L, Haks, MC, Agbla, S, Sutherland, JS, Adetifa, I, Donkor, S, Quinten, E, Daramy, M, Antonio, M, Kampmann, B, Ottenhoff, THM, Dockrell, H and Ota, MO (2016). Host Immune Responses Differ between M. africanum- and M. tuberculosis-Infected Patients following Standard Anti-tuberculosis Treatment. [Data Collection]. PLoS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0004701.

Mansour, NR, Paveley, R, Gardner, JMF, Bell, AS, Parkinson, T and Bickle, Q (2016). High Throughput Screening Identifies Novel Lead Compounds with Activity against Larval, Juvenile and Adult Schistosoma mansoni. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pntd.0004659.

Diaz-ordaz, K, Kenward, M, Gomes, M and Grieve, R (2016). Multiple imputation methods for bivariate outcomes in cluster randomised trials: Supporting Information. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.99.

Chotirmall, SH, Rothnie, K, Müllerová, H, Hurst, JR, Smeeth, L, Davis, K, Thomas, SL and Quint, J (2016). Validation of the Recording of Acute Exacerbations of COPD in UK Primary Care Electronic Healthcare Records. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0151357.

Carpenter, DO, Svefors, P, Rahman, A, Ekström, E, Khan, AI, Lindström, E, Persson, LÅ and Ekholm Selling, K (2016). Stunted at 10 Years. Linear Growth Trajectories and Stunting from Birth to Pre-Adolescence in a Rural Bangladeshi Cohort. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0149700

Tsuboi, T, Grigg, M, Barber, BE, Marfurt, J, Imwong, M, William, T, Bird, E, Piera, KA, Aziz, A, Boonyuen, U, Drakeley, C, Cox, J, White, NJ, Cheng, Q, Yeo, TW, Auburn, S and Anstey, NM (2016). Dihydrofolate-Reductase Mutations in Plasmodium knowlesi Appear Unrelated to Selective Drug Pressure from Putative Human-To-Human Transmission in Sabah, Malaysia. [Data Collection]. PLoS One. https://doi.org/10.1371/journal.pone.0149519.

Wang, X, Zheng, D, Arima, H, Sato, S, Gasparrini, A, Heeley, E, Delcourt, C, Lo, S, Huang, Y, Wang, J, Stapf, C, Robinson, T, Lavados, P, Chalmers, J and Anderson, CS (2016). Low Ambient Temperature and Intracerebral Hemorrhage: The INTERACT2 Study. [Data Collection]. PLoS One. https://doi.org/10.1371/journal.pone.0149040.

Phelan, JE, Coll, F, Bergval, I, Anthony, RM, Warren, R, Sampson, SL, Gey van Pittius, NC, Glynn, JR, Crampin, AC, Alves, A, Bessa, TB, Campino, S, Dheda, K, Grandjean, L, Hasan, R, Hasan, Z, Miranda, A, Moore, D, Panaiotov, S, Perdigao, J, Portugal, I, Sheen, P, de Oliveira Sousa, E, Streicher, EM, van Helden, PD, Viveiros, M, Hibberd, ML, Pain, A, Mcnerney, R and Clark, TG (2016). Data for: "Recombination in pe/ppe genes contributes to genetic variation in Mycobacterium tuberculosis lineages". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. http://pathogenseq.lshtm.ac.uk/pe_ppe/

Kretzschmar, MEE, Tosas Auguet, O, Betley, JR, Stabler, R, Patel, A, Ioannou, A, Marbach, H, Hearn, P, Aryee, A, Goldenberg, SD, Otter, JA, Desai, N, Karadag, T, Grundy, C, Gaunt, M, Cooper, BS, Edgeworth, JD and Kypraios, T (2016). Evidence for Community Transmission of Community-Associated but Not Health-Care-Associated Methicillin-Resistant Staphylococcus Aureus Strains Linked to Social and Material Deprivation: Spatial Analysis of Cross-sectional Data. [Data Collection]. PLOS Medicine. https://doi.org/10.1371/journal.pmed.1001944

Karkey, A, Jombart, T, Walker, AW, Thompson, CN, Torres, A, Dongol, S, Tran Vu Thieu, N, Pham Thanh, D, Tran Thi Ngoc, D, Voong Vinh, P, Singer, AC, Parkhill, J, Thwaites, G, Basnyat, B, Ferguson, N and Baker, S (2016). The Ecological Dynamics of Fecal Contamination and Salmonella Typhi and Salmonella Paratyphi A in Municipal Kathmandu Drinking Water. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0004346

Houlihan, C, Baisley, K, Bravo, IG, Kapiga, S, de Sanjosé, S, Changalucha, J, Ross, D, Hayes, R and Watson-jones, D (2015). The Incidence of Human Papillomavirus in Tanzanian Adolescent Girls Before Reported Sexual Debut. [Data Collection]. The Journal of adolescent health. https://doi.org/10.1016/j.jadohealth.2015.10.248.

Francis, SC, Hou, Y, Baisley, K, Van de wijgert, J, Watson-Jones, D, Ao, TT, Herrera, C, Maganja, K, Andreasen, A, Coulton, GR, Hayes, RJ and Shattock, RJ (2015). Data for: "Immune activation in the female genital tract: Expression profiles of soluble proteins in women at high risk for HIV infection". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.104.

Kerkhoff, AD, Lawn, S, Schutz, C, Burton, R, Boulle, A, Cobelens, FJ and Meintjes, G (2015). Data for: "Anemia, Blood Transfusion Requirements and Mortality Risk in Human Immunodeficiency Virus-Infected Adults Requiring Acute Medical Admission to Hospital in South Africa". [Data Collection]. Oxford University Press. http://ofid.oxfordjournals.org/content/2/4/ofv173/suppl/DC1

Nnko, S, Bukenya, D, Kavishe, BB, Biraro, S, Peck, R, Kapiga, S, Grosskurth, H and Seeley, J (2015). Chronic Diseases in North-West Tanzania and Southern Uganda. Public Perceptions of Terminologies, Aetiologies, Symptoms and Preferred Management. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0142194.

Phelan, J, Coll, F, Mcnerney, R, Ascher, DB, Pires, DEV, Furnham, N, Coeck, N, Hill-Cawthorne, GA, Nair, MB, Mallard, K, Ramsay, A, Campino, S, Hibberd, M, Pain, A, Rigouts, L and Clark, T (2015). Whole genome sequences for M.tuberculosis isolates from the TDR strain bank. [Data Collection]. European Nucleotide Archive. http://www.ebi.ac.uk/ena/data/view/PRJEB11653

Zoltner, M, Leung, KF, Alsford, S, Horn, D and Field, MC (2015). Modulation of the Surface Proteome through Multiple Ubiquitylation Pathways in African Trypanosomes: Supporting Information. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.16.

Johnson, A (2015). National Survey of Sexual Attitudes and Lifestyles, 2010-2012. [Data Collection]. UK Data Service, Essex, United Kingdom. http://dx.doi.org/10.5255/UKDA-SN-7799-1

Silver, M, Corbin, KD, Hellenthal, G, da Costa, K, Dominguez-salas, P, Moore, S, Owen, J, Prentice, A, Hennig, B and Zeisel, SH (2015). Evidence for negative selection of gene variants that increase dependence on dietary choline in a Gambian cohort: Supplemental Data. [Data Collection]. The FASEB Journal. https://doi.org/10.1096/fj.15-271056.

Goodman, A, van Sluijs, EM and Ogilvie, D (2015). Cycle training for children: Which schools offer it and who takes part? [Data Collection]. Journal of Transport & Health. https://doi.org/10.1016/j.jth.2015.07.002.

Brauer, R, Bhaskaran, K, Chaturvedi, N, Dexter, DT, Smeeth, L and Douglas, I (2015). Glitazone Treatment and Incidence of Parkinson’s Disease among People with Diabetes: A Retrospective Cohort Study. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pmed.1001854.

Kucharski, A, Conlan, AJK and Eames, K (2015). School's Out: Seasonal Variation in the Movement Patterns of School Children. [Data Collection]. Figshare Digital Repository. https://doi.org/10.1371/journal.pone.0128070.

Cairns, M, Woukeu, A and Tagbor, H (2015). Screening and treatment of malaria in pregnancy in West Africa. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.2.

Benavente, E, Coll, F, Furnham, N, Mcnerney, R, Glynn, J, Campino, S, Pain, A, Mohareb, FR and Clark, T (2015). PhyloTrack. [Data Collection]. SourceForge. https://doi.org/10.17037/DATA.82.

Mobegi, V, Duffy, C, Amambua-Ngwa, A, Loua, KM, Laman, E, Nwakanma, DC, MacInnis, B, Aspeling-jones, H, Murray, L, Clark, T, Kwiatkowski, DP and Conway, D (2015). Genome-wide analysis of selection on the malaria parasite Plasmodium falciparum in West African populations of differing infection endemicity: Supplementary data. [Data Collection]. Molecular Biology and Evolution, Oxford Journals. http://mbe.oxfordjournals.org/content/31/6/1490/suppl/DC1

Kucharski, A, Mills, H, Pinsent, A, Fraser, C, Kerkhove, MV and Riley, S (2015). Data from: Distinguishing between reservoir exposure and human-to-human transmission for emerging pathogens using case onset data. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.2g43n

Ghinai, R, El-Duah, P, Chi, K, Pillay, A, Solomon, AW, Bailey, R, Agana, N, Mabey, D, Chen, C, Adu-Sarkodie, Y and Marks, M (2015). A Cross-Sectional Study of ‘Yaws’ in Districts of Ghana Which Have Previously Undertaken Azithromycin Mass Drug Administration for Trachoma Control. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pntd.0003496.

Phelan, J, Maitra, A, Mcnerney, R, Nair, M, Gupta, A, Coll, F, Pain, A, Bhakta, S and Clark, TG (2015). Data for: "The draft genome of Mycobacterium aurum, a potential model organism for investigating drugs against Mycobacterium tuberculosis and Mycobacterium leprae". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. http://pathogenseq.lshtm.ac.uk/m_aurum/

Reuter, S, Török, ME, Holden, MT, Reynolds, R, Raven, KE, Blane, B, Donker, T, Bentley, SD, Aanensen, DM, Grundmann, H, Feil, EJ, Spratt, BG, Parkhill, J and Peacock, S (2015). Staphylococcus Aureus BSAC study data. [Data Collection]. European Nucleotide Archive. http://www.ebi.ac.uk/ena/data/view/ERP001012

Claessens, A, Hamilton, WL, Kekre, M, Otto, TD, Faizullabhoy, A, Rayner, JC and Kwiatkowski, D (2014). Generation of Antigenic Diversity in Plasmodium falciparum by Structured Rearrangement of Var Genes During Mitosis. [Data Collection]. PLOS Genetics. https://doi.org/10.1371/journal.pgen.1004812.

Gómez-Olivé, FX, Thorogood, M, Bocquier, P, Mee, P, Kahn, K, Berkman, L and Tollman, S (2014). Social conditions and disability related to the mortality of older people in rural South Africa: Supplementary Data. [Data Collection]. Oxford University Press. http://ije.oxfordjournals.org/content/43/5/1531/suppl/DC1

White, R (2014). Respondent-Driven Sampling and Total Population Data from a Rural Ugandan Cohort, 2010: Special Licence Access. [Data Collection]. UK Data Service, Essex, United Kingdom. http://dx.doi.org/10.5255/UKDA-SN-7462-1

Jombart, T, Cori, A, Didelot, X, Cauchemez, S, Fraser, C and Ferguson, N (2014). Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data. [Data Collection]. PLOS Computational Biology. https://doi.org/10.1371/journal.pcbi.1003457

Bronowski, C, Fookes, MC, Gilderthorp, R, Ashelford, KE, Harris, SR, Phiri, A, Hall, N, Gordon, MA, Wain, J, Hart, CA, Wigley, P, Thomson, NR and Winstanley, C (2013). Genomic Characterisation of Invasive Non-Typhoidal Salmonella enterica Subspecies enterica Serovar Bovismorbificans Isolates from Malawi. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0002557

Sheehy, SH, Duncan, CJA, Elias, SC, Biswas, S, Collins, KA, O'hara, G, Halstead, FD, Ewer, KJ, Mahungu, T, Spencer, AJ, Miura, K, Poulton, ID, Dicks, MDJ, Edwards, NJ, Berrie, E, Moyle, S, Colloca, S, Cortese, R, Gantlett, K, Long, CA, Lawrie, AM, Gilbert, SC, Doherty, T, Nicosia, A, Hill, AVS and Draper, SJ (2012). Phase Ia clinical evaluation of the safety and immunogenicity of the Plasmodium falciparum blood-stage antigen AMA1 in ChAd63 and MVA vaccine vectors. [Data Collection]. Figshare Digital Repository. https://doi.org/10.17037/DATA.24.

Lubell, Y, Mills, A, Whitty, C and Staedke, S (2010). An Economic Evaluation of Home Management of Malaria in Uganda: An Interactive Markov Model. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0012439.s001.

Breeze, E, Wilkinson, P, Fletcher, A, Bulpitt, C, Jones, D and Tulloch, A (2006). Quality of Life among People Aged 75 and over in Great Britain, 1994-1998. [Data Collection]. UK Data Service, Essex, United Kingdom. http://dx.doi.org/10.5255/UKDA-SN-4449-1

Farmer, R, Bhaskaran, K, Eastwood, SV and Mathur, R Clinical code lists for: "Metformin use and risk of cancer in patients with type 2 diabetes: A cohort study of primary care records using inverse probability weighting of marginal structural models". [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000667.

Carreira, H and Funston, G Code lists for: "Risk of adverse mental health outcomes in women with history of breast cancer: a matched population-based cohort study in the United Kingdom (1988-2018)". [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom, London, United Kingdom. https://doi.org/10.17037/DATA.00001429

Weiss, H Menstrual Hygiene and Safe Male Circumcision Promotion in Ugandan Schools (MENISCUS). [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom, London, United Kingdom. https://doi.org/10.17037/DATA.274.