A

Agoti, CN, Plan, MVT, Munywoki, PK, Githinji, G, Medley, GF, Cane, PA, Kellam, P, Cotten, M and Nokes, DJ (2019). Replication Data for: Genomic analysis of respiratory syncytial virus infections in households and utility in inferring who infects the infant. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/DUCQWE

Aibana, O, Huang, C, Aboud, S, Arnedo-Pena, A, Becerra, MC, Bellido-Blasco, JB, Bhosale, R, Calderon, R, Chiang, S, Contreras, C, Davaasambuu, G, Fawzi, WW, Franke, MF, Galea, JT, Garcia-Ferrer, D, Gil-Fortuño, M, Gomila-Sard, B, Gupta, A, Gupte, N, Hussain, R, Iborra-Millet, J, Iqbal, NT, Juan-Cerdán, JV, Kinikar, A, Lecca, L, Mave, V, Meseguer-Ferrer, N, Montepiedra, G, Mugusi, FM, Owolabi, O, Parsonnet, J, Roach-Poblete, F, Romeu-García, MA, Spector, SA, Sudfeld, CR, Tenforde, MW, Togun, T, Yataco, R, Zhang, Z and Murray, MB (2019). Vitamin D status and risk of incident tuberculosis disease: A nested case-control study, systematic review, and individual-participant data meta-analysis. [Data Collection]. PLOS Medicine. https://doi.org/10.1371/journal.pmed.1002907

Armitage, EP, Senghore, E, Darboe,, S, Momodou, B, Camara, J, Bah, S, Marks, M, Cerami, C, Roca, A, Antonio, M, Turner, CE and De silva, T (2019). High burden and seasonal variation of paediatric scabies and pyoderma prevalence in The Gambia: A cross-sectional study. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0007801

Arunga, S (2019). Traditional Eye Medicine use in Microbial Keratitis in Uganda. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/5GOPKZ

Arunga, S (2019). The management of microbial keratitis within Uganda’s primary health system: a situational analysis. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/MSLAOS

Arzika, AM, Maliki, R, Boubacar, N, Kane, S, Cotter, SY, Lebas, E, Cook, C, Bailey, R, West, SK, Rosenthal, PJ, Porco, TC, Lietman,, TM and Keenan, JD (2019). Biannual mass azithromycin distributions and malaria parasitemia in pre-school children in Niger: A cluster-randomized, placebo-controlled trial. [Data Collection]. PLOS Medicine. https://doi.org/10.1371/journal.pmed.1002835

Ashton, P, Thanh, L, Trieu, P, Van Anh, D, Trinh, N, Beardsley, J, Kibengo, F, Chierakul, W, Dance, D, Rattanavong, S, Davong, V, Hung, L, Chau, N, Tung, N, Chan, A, Thwaites, G, Lalloo, D, Anscombe, C, Nhat, L, Perfect, J, Dougan, G, Baker, S, Harris, S and Day, J (2019). Three phylogenetic groups have driven the recent population expansion of Cryptococcus neoformans. [Data Collection]. Nature Communications. https://doi.org/10.1038/s41467-019-10092-5

B

Bailey, J, Opondo, C, Lelijveld, N, Marron, B, Onyoo, P, Musyoki, E, Adongo, S, Briend, A, Manary, M and Kerac, M (2019). Combined Protocol for Acute Malnutrition Study (ComPAS) dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001151.

Band, G, Si Le, Q, Clarke, GM, Kivinen, K, Hubbart, C, Jeffreys, AE, Rowlands, K, Leffler, EM, Jallow, M, Conway, D, Sisay-Joof, F, Sirugo, G, d’Alessandro, U, Toure, OB, Thera, MA, Konate, S, Sissoko, S, Mangano, VD, Bougouma, EC, Sirima, SB, Amenga-Etego, LN, Ghansah, AK, Hodgson, AVO, Wilson, MD, Enimil, A, Ansong, D, Evans, J, Ademola, SA, Apinjoh, TO, Ndila, CM, Manjurano, A, Drakeley, C, Reyburn, H, Hoan Phu, N, Quyen, NTN, Quang Thai, C, Tinh Hien, T, Teo, YY, Manning, L, Laman, M, Michon, P, Karunajeewa, H, Siba, P, Allen, S, Allen, A, Bahlo, M, Davis, TME, Simpson, V, Shelton, J, Spencer, CCA, Busby, GBJ, Kerasidou, A, Drury, E, Stalker, J, Dilthey, A, Mentzer, AJ, McVean, G, Bojang, KA, Doumbo, O, Modiano, D, Koram, KA, Agbenyega, T, Amodu, OK, Achidi, E, Williams, T, Marsh, K, Riley, E, Molyneux, M, Taylor, T, Dunstan, SJ, Farrar, J, Mueller, I, Rockett, KA and Kwiatkowski, DP (2019). Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania. [Data Collection]. Nature Communications. https://doi.org/10.1038/s41467-019-13480-z

Barreaux, AMG, Oumbouke, W, Zran Tia, I, Brou, N, Koffi, AA, N'guessan, R and Thomas, MB (2019). Semi-field evaluation of the cumulative effects of a “Lethal House Lure” on malaria mosquito mortality. [Data Collection]. Malaria Journal. https://doi.org/10.1186/s12936-019-2936-2

Barsosio, HC, Gitonga, JN, Karanja, HK, Nyamwaya, DK, Omuoyo, DO, Kamau, E, Hamaluba, MM, Nyiro, JU, Kitsao, BS, Nyaguara, A, Mwakio, S, Newton, CR, Sang, R, Wright, D, Sanders, EJ, Seale, AC, Agoti, CN, Berkley, JA, Bejon, P and Warimwe, GM (2019). Replication Data for: Congenital Microcephaly Unrelated to Flavivirus Exposure in Coastal Kenya. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/4EB9PG

Beale, MA, Marks, M, Sahi, SK, Tantalo, LC, Nori, AV, French, P, Lukehart, SA, Marra, CM and Thomson, N (2019). Genomic epidemiology of syphilis reveals independent emergence of macrolide resistance across multiple circulating lineages. [Data Collection]. Nature Communications. https://doi.org/10.1038/s41467-019-11216-7

Benova, L, Moller, A and Moran, AC (2019). Qualitative data for: "The landscape of validation of global maternal and newborn health indicators through key informant interviews". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001403.

Bhaskaran, K (2019). Covariate Code List - Alcohol status. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001121.

Bhaskaran, K (2019). Covariate Code List - Diabetes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001122.

Bhaskaran, K (2019). Covariate Code List - Smoking status. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001120.

Bhaskaran, K (2019). Read / ICD-10 Code List - Cancer. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001114.

Bhaskaran, K, Matthews, A, Smeeth, L and Strongman, H (2019). Exposure Code List - Cardiovascular disease (ICD-10). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001117.

Bhaskaran, K, Matthews, A, Smeeth, L and Strongman, H (2019). Exposure Code List - Cardiovascular disease (Read codes). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001116.

Bhaskaran, K, Matthews, A, Smeeth, L and Strongman, H (2019). Exposure Code List - Revascularisation (OPCS). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001119.

Bhaskaran, K and Strongman, H (2019). Covariate Code List - Diabetes drugs. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001123.

Bidulka, P and Tomlinson, LA (2019). Clinical Codelist - AKI ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Bidulka, P and Tomlinson, LA (2019). Clinical Codelist - Arrhythmia ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Bidulka, P and Tomlinson, LA (2019). Clinical Codelist - Arrhythmia Read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Bidulka, P and Tomlinson, LA (2019). Clinical Codelist - Diabetes ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Bidulka, P and Tomlinson, LA (2019). Clinical Codelist - Diabetes Mellitus Read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Bidulka, P and Tomlinson, LA (2019). Clinical Codelist - End-Stage Renal Disease (ESRD) Read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Bidulka, P and Tomlinson, LA (2019). Clinical Codelist - Heart Failure ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Bidulka, P and Tomlinson, LA (2019). Clinical Codelist - Heart Failure Read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Bidulka, P and Tomlinson, LA (2019). Clinical Codelist - Hypertension ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Bidulka, P and Tomlinson, LA (2019). Clinical Codelist - Hypertension Read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Bidulka, P and Tomlinson, LA (2019). Clinical Codelist - Ischaemic Heart Disease ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Bidulka, P and Tomlinson, LA (2019). Clinical Codelist - Ischaemic Heart Disease Read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Bidulka, P and Tomlinson, LA (2019). Clinical Codelist - Serum Creatinine Measure Read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Bidulka, P and Tomlinson, LA (2019). Clinical Codelist - Stroke ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Bidulka, P and Tomlinson, LA (2019). Procedure Codelist - End-Stage Renal Disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Blencowe, H, Krasevec, J, de Onis, M, Black, RE, An, X, Stevens, GA, Borghi, E, Hayashi, C, Estevez, D, Cegolon, L, Shiekh, S, Ponce Hardy, V, Lawn, JE and Cousens, S (2019). Supporting information for National, regional, and worldwide estimates of low birthweight rates in 2015, with trends from 2000: a systematic analysis. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001090.

Boelsen, LK, Dunne, EM, Mika, M, Eggers, S, Nguyen, CD, Ratu, FT, Russell, FM, Mulholland, K, Hilty, M and Satzke, C (2019). The association between pneumococcal vaccination, ethnicity, and the nasopharyngeal microbiota of children in Fiji. [Data Collection]. Microbiome. https://doi.org/10.1186/s40168-019-0716-4

Boinett, CJ, Cain, AK, Hawkey, J, Do Hoang, NT, Khanh, NNT, Thanh, DP, Dordel, J, Campbell, JI, Lan, NPH, Mayho, M, Langridge, GC, Hadfield, J, Chau, NVV, Thwaites, GE, Parkhill, J, Thomson, NR, Holt, KE and Baker, S (2019). Clinical and laboratory-induced colistin-resistance mechanisms in Acinetobacter baumannii. [Data Collection]. Microbial genomics. https://doi.org/10.1099/mgen.0.000246

Borghini, L, Png, E, Binder, A, Wright, VJ, Pinnock, E, de Groot, R, Hazelzet, J, Emonts, M, Van der Flier, M, Schlapbach, LJ, Anderson, S, Secka, F, Salas, A, Fink, C, Carrol, ED, Pollard, AJ, Coin, LJ, Kuijpers, TW, Martinon-Torres, F, Zenz, W, Levin, M, Hibberd, M and Davila, S (2019). Identification of regulatory variants associated with genetic susceptibility to meningococcal disease. [Data Collection]. Scientific Reports. https://doi.org/10.1038/s41598-019-43292-6

Bourdon, C, Lelijveld, N, Thompson, D, Dalvi, PS, Gonzales, GB, Wang, D, Misagh, A, Wine, E, Chimwezi, E, Wells, JC, Kerac, M, Bandsma, R and Nyirenda, M (2019). Metabolomics in plasma of Malawian children 7 years after surviving severe acute malnutrition: “ChroSAM” a cohort study. [Data Collection]. EBio Medicine.

Brady, OJ and Bastos, L (2019). Code for simulating release of Wolbachia mosquitoes in Indonesia and assessing their cost effectiveness in different places over time. [Data Collection]. Github. https://github.com/obrady/Wolbachia_CE/

Bretscher, MT, Dahal, P, Griffin, JT, Stepniewska, K, Bassat, Q, Baudin, E, D'Alessandro, U, Djimde, AA, Dorsey, G, Espie, E, Fofana, B, Gonzalez, R, Juma, E, Karema, C, Lasry, E, Lell, B, Lima, N, Menendez, C, Mombo-Ngoma, G, Moreira, C, Nikiema, F, Ouedraogo, JB, Staedke, SG, Tinto, H, Valea, I, Yeka, A, Ghani, AC, Guerin, PJ and Okell, LC (2019). A pooled analysis of the duration of chemoprophylaxis against malaria after treatment with artesunate-amodiaquine and artemether-lumefantrine: data & analysis output. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3339214

Bright, T (2019). Data for: Rapid Assessment of Hearing Loss survey in Malawi. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001510.

Burr, SE, Hart, J, Samikwa, L, Chaima, D, Cooley, G, Martin, D, Masika, M, Solomon, AW, Bailey, RL and Kalua, K (2019). Pgp3 seroprevalence and associations with active trachoma and ocular Chlamydia trachomatis infection in Malawi: cross-sectional surveys in six evaluation units. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0007749

C

Camarda, G, Jirawatcharadech, P, Priestley, RS, Saif, A, March, S, Wong, MHL, Leung, S, Miller, AB, Baker, DA, Alano, P, Paine, MJI, Bhatia, SN, O’Neill, PM, Ward, SA and Biagini, GA (2019). Antimalarial activity of primaquine operates via a two-step biochemical relay. [Data Collection]. Nature Communications. https://doi.org/10.1038/s41467-019-11239-0

Carrasco-Escobar, G, Manrique, E, Ruiz-Cabrejos, J, Saaveddra, M, Alava, F, Bickersmith, S, Prussing, C, Vinetz, JM, Conn, JE, Moreno, M and Gamboa, D (2019). High-accuracy detection of malaria vector larval habitats using drone-based multispectral imagery. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0007105

Carreira, H and Funston, G (2019). Clinical Codelist - Anxiety Symptoms and Diagnoses. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001397.

Carreira, H and Funston, G (2019). Clinical Codelist - Breast Cancer Diagnoses. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001396.

Carreira, H and Funston, G (2019). Clinical Codelist - Cognitive Dysfunction (symptoms and diagnoses). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001417.

Carreira, H and Funston, G (2019). Clinical Codelist - Depression (symptoms and diagnoses). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001400.

Carreira, H and Funston, G (2019). Clinical Codelist - Fatigue (symptoms and diagnoses). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001419.

Carreira, H and Funston, G (2019). Clinical Codelist - Fatigue Syndrome. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001420.

Carreira, H and Funston, G (2019). Clinical Codelist - Female Sexual Dysfunction (symptoms and diagnoses). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001426.

Carreira, H and Funston, G (2019). Clinical Codelist - Pain (broad definition). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001423.

Carreira, H and Funston, G (2019). Clinical Codelist - Selected Anxiety Disorders. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001398.

Carreira, H and Funston, G (2019). Clinical Codelist - Selected Depressive Disorders. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001401.

Carreira, H and Funston, G (2019). Clinical Codelist - Selected Sexual Disorders. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001427.

Carreira, H and Funston, G (2019). Clinical Codelist - Self-harm. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001428.

Carreira, H and Funston, G (2019). Clinical Codelist - Sleep Disorder (symptoms and diagnoses). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001421.

Carreira, H and Funston, G (2019). Therapy Codelist - Antidepressants. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001402.

Carreira, H and Funston, G (2019). Therapy Codelist - Anxiety Drugs. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001399.

Carreira, H and Funston, G (2019). Therapy Codelist - Dementia. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001418.

Carreira, H and Funston, G (2019). Therapy Codelist - Hypnotics. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001422.

Carreira, H and Funston, G (2019). Therapy Codelist - Opioids. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001424.

Carreira, H and Funston, G (2019). Therapy Codelist - Opioids excluding Codeine. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001425.

Caruso, BA, Sclar, GD, Routray, P, Nagel, C, Majorin, F, Sola, S, Koehne, W, DeShay, R, Udaipuria, S, Williams, R and Clasen, T (2019). Impact of a multi-level intervention, Sundara Grama, on latrine use and safe disposal of child faeces in rural Odisha, India. [Data Collection]. Harvard Dataverse. https://doi.org/10.23846/TW14IE119.

Cerna-turoff, I, Fischer, H, Mayhew, S and Devries, K (2019). Violence against children and natural disasters: A systematic review and meta-analysis of quantitative evidence. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0217719

Chanvatik, S, Donnua, S, Lekagul, A, Kaewkhankhaeng, W, Vongmongkol, V, Athipunyakom, P, Khamlar, S, Prommintara, M and Tancharoensathien, V (2019). Antibiotic use in mandarin production (Citrus reticulata Blanco) in major mandarin-producing areas in Thailand: A survey assessment. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0225172

Chauhan, K, Schmidt, WP, Aunger, R, Gopalan, B, Saxena, D, Yashobant, S, Patwardhan, V and Curtis, V (2019). The 5 Star Toilet Campaign: Improving toilet use in rural Gujarat. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/Q3P4WX

Chemaitelly, H, Nagelkerke, N, Omori, R and Abu-Raddad, LJ (2019). Characterizing herpes simplex virus type 1 and type 2 seroprevalence declines and epidemiological association in the United States. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0214151

Chikandiwa, A, Pisa, P, Tamalet, C, Muller, E, Michelow, P, Chersich, MF, Mayaud, P and Delany-moretlwe, S (2019). Prevalent, persistent anal HPV infection and squamous intraepithelial lesions: Findings from a cohort of men living with HIV in South Africa. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0225571

Chiner-Oms, Álvaro, Berney, M, Boinett, C, González-Candelas, F, Young, DB, Gagneux, S, Jacobs Jr, WR, Parkhill, J, Cortes, T and Comas, I (2019). Genome-wide mutational biases fuel transcriptional diversity in the Mycobacterium tuberculosis complex. [Data Collection]. Nature Communications. https://doi.org/10.1038/s41467-019-11948-6

Chung The, H, Boinett, C, Pham Thanh, D, Jenkins, C, Weill, F, Howden, BP, Valcanis, M, De Lappe, N, Cormican, M, Wangchuk, S, Bodhidatta, L, Mason, CJ, Nguyen, TNT, Ha Thanh, T, Voong, VP, Duong, VT, Nguyen, PHL, Turner, P, Wick, R, Ceyssens, P, Thwaites, G, Holt, KE, Thomson, NR, Rabaa, MA and Baker, S (2019). Dissecting the molecular evolution of fluoroquinolone-resistant Shigella sonnei. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.8856641.v1

Chung The, H, Boinett, C, Thanh, DP, Jenkins, C, Weill, F, Howden, BP, Valcanis, M, De Lappe, N, Cormican, M, Wangchuk, S, Bodhidatta, L, Mason, CJ, Thi Nguyen, TN, Ha Thanh, T, Voong, VP, Duong, VT, Lan Nguyen, PH, Turner, P, Wick, R, Ceyssens, P, Thwaites, G, Holt, KE, Thomson, N, Rabaa, MA and Baker, S (2019). Dissecting the molecular evolution of fluoroquinolone-resistant Shigella sonnei. [Data Collection]. Nature Communications. https://doi.org/10.1038/s41467-019-12823-0

Clery, A, Minassian, C, Smeeth, L and Mathur, R (2019). Ethnicity code list For: "The effects of antenatal care, ethnicity and social deprivation on the risk of stillbirth in the UK: A cohort study using routinely collected data". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001494.

Clery, A, Minassian, C, Smeeth, L and Mathur, R (2019). Morbidity code lists for: "The effects of antenatal care, ethnicity and social deprivation on the risk of stillbirth in the UK: A cohort study using routinely collected data". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001495.

Clery, A, Minnasian, C, Smeeth, L and Mathur, R (2019). Antenatal code list for: "The effects of antenatal care, ethnicity and social deprivation on the risk of stillbirth in the UK: A cohort study using routinely collected data". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001493.

Collett, CF, Kitson, C, Baker, N, Steele-stallard, HB, Santrot, MV, Hutchinson, S, Horn, D and Alsford, S (2019). Chemogenomic profiling of anti-leishmanial efficacy and resistance in the related kinetoplastid parasite Trypanosoma brucei. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/data/view/PRJEB31973

Cooper, L, Yun Kang, S, Bisanzio, D, Maxwell, K, Rodriguez-Barraquer, I, Greenhouse, B, Drakeley, C, Arinaitwe, E, Staedke, S, Gething, PW, Eckhoff, P, Reiner Jr., RC, Hay, SI, Dorsey, G, Kamya, MR, Lindsay, SW, Grenfell, BT and Smith, DL (2019). Heterogeneous Exposure and Hotspots for Malaria Vectors at Three Study Sites in Uganda. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.6797408.v3

Cori, A, Kamvar, ZN, Stockwin, J, Jombart, T, Thompson, R and Dahlqwist, E (2019). mrc-ide/EpiEstim: 2.2-3. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3333653

Coutinho, C, Bastos, L, Corrêa da Mota, J, Toledo, L, Costa, K, Bertoni, N and Bastos, FI (2019). The risks of HCV infection among Brazilian crack cocaine users: incorporating diagnostic test uncertainty. [Data Collection]. Scientific Reports. https://doi.org/10.1038/s41598-018-35657-0

Cox, SE (2019). Dataset and dictionary for inpatient mortality in a TB ward in the Philippines. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.8217443.v1

Crampin, M (2019). Dataset for: Prevalence of impaired renal function in Malawi. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001150.

Czerniewska, A (2019). Dataset for behaviour-microbiology studies of face washing techniques for trachoma control: a pilot study within the Stronger SAFE project. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001341.

Czerniewska, A, Aunger, R, Muangi, WC, Massa, K and Curtis, V (2019). Theory-driven formative research to inform the design of a national sanitation campaign in Tanzania - Household Interview Guide. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001155.

D

Dallaku, K, Mansmann, U, Shakur-Still, H, Roberts, I, Delius, MV, Siegmund, B, Gliozheni, O, Tasha, I and Cenameri, S (2019). ETAPLAT dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000970.

Dance, D, Somsavanh, S, Rith, K, Sengdouangphachanh, A, Luangraj, M, Vongsouvath, M, Newton, P, Lubell, Y and Turner, P (2019). The cost-effectiveness of the use of selective media for the diagnosis of melioidosis in different settings. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0007598

Daniele, M, Ouedraogo, D, Some, H, Ganaba, R, Sarrassat, S, Cousens, S, Rossier, C and Filippi, V (2019). Dataset for "Involving male partners in maternity care in Burkina Faso: a randomized controlled trial". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001021.

Davies, MR, McIntyre, L, Mutreja, A, Lacey, JA, Lees, JA, Towers, RJ, Duchêne, S, Smeesters, PR, Frost, HR, Price, DJ, Holden, MT, Sophia, D, Giffard, PM, Worthing, KA, Seale, AC, Berkley, JA, Harris, SR, Rivera-Hernandez, T, Berking, O, Cork, AJ, Torres, RS, Lithgow, T, Strugnell, RA, Bergmann, R, Nitsche-Schmitz, P, Chhatwal, GS, Bentley, SD, Fraser, JD, Moreland, NJ, Carapetis, JR, Steer, AC, Parkhill, J, Saul, A, Williamson, DA, Currie, BJ, Tong, SY, Dougan, G and Walker, MJ (2019). Atlas of group A streptococcal vaccine candidates compiled using large-scale comparative genomics. [Data Collection]. Nature Genetics. https://doi.org/10.1038/s41588-019-0417-8

DeCelles, J, Kaufman, Z, Bhauti, K, Hershow, R, Weiss, H, Chaibva, C, Moyo, N, Braunschweig, E, Mantula, F, Hatzold, K and Ross, D (2019). Voluntary medical male circumcision uptake through soccer in Zimbabwe. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/FI4R2V

Dean, W (2019). Survey of Ophthalmologists-in-Training in Eastern, Central and Southern Africa - Survey data and questionnaire. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001464.

Delves, M, Lafuente-Monasterio, MJ, Upton, L, Ruecker, A, Leroy, D, Gamo, F and Sinden, R (2019). Table 1 - Fueling Open Innovation for Malaria Transmission-Blocking Drugs: Hundreds of Molecules Targeting Early Parasite Mosquito Stages. [Data Collection]. Frontiers in Microbiology. https://doi.org/10.3389/fmicb.2019.02134

Demissie, SD, Larson, H, Chantler, T, Kozuki, N, Karafillakis, E, Landegger, J, Kiapi, L, Gebrekirstos, P, Mohammad, S, Wodajo, S and Langston, A (2019). Closing the immunisation gap in Ethiopia: a formative evaluation of 'The Fifth Child Project'. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/Z75DUF

Der, J, Grint, D, Narh, CT, Bonsu, F and Grant, AD (2019). Data for "Where are patients missed in the tuberculosis diagnostic cascade? A prospective cohort study in Ghana". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001529.

Derrick, T (2019). Longitudinal gene expression dataset [The immuno-pathogenesis of progressive scarring trachoma: results of a four-year longitudinal study in Tanzanian children]. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.11401158.v1

Dianati, K, Zimmermann, N, Milner, J, Muindi, K, Ezeh, A, Chege, M, Mberu, B, Kyobutungi, C, Fletcher, H, Wilkinson, P and Davies, M (2019). Household air pollution in Nairobi's slums: A long-term policy evaluation using participatory system dynamics. [Data Collection]. BMC Medicine. https://doi.org/10.1186/s12916-019-1260-6

Dodd, PJ, Looker, C, Plumb, ID, Bond, V, Schaap, A, Shanaube, K, Muyoyeta, M, Vynnycky, E, Godfrey-faussett, P, Corbett, EL, Beyers, N, Ayles, H and White, RG (2019). Social contact data for Zambia and South Africa (CODA dataset). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.2548692

Dorman, MJ, Domman, D, Uddin, MI, Sharmin, S, Hassan Afrad, M, Begum, YA, Qadri, F and Thomson, NR (2019). Supporting data for 'High quality reference genomes for toxigenic and non-toxigenic Vibrio cholerae serogroup O139'. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.6480266.v1

Dorman, MJ, Goulding, DA, Domman, D, Turnbull, JD, Cormie, C, Fazal, M, Goulding, DA, Russell, JE, Alexander, S and Thomson, NR (2019). The history, genome and biology of NCTC 30: a non-pandemic Vibrio cholerae isolate from World War One. [Data Collection]. Proceedings of the Royal Society B. https://doi.org/10.1098/rspb.2018.2025

Doyle, RM, Rubio, M, Dixon, G, Hartley, J, Klein, N, Coll, P and Harris, KA (2019). Cross-transmission is not the source of new Mycobacterium abscessus infections in a multi-centre cohort of cystic fibrosis patients. [Data Collection]. Clinical Infectious Diseases. https://doi.org/10.1101/582684 https://doi.org/10.1093/cid/ciz526

Dube, A and Crampin, AC (2019). Malawi - Karonga HDSS INDEPTH Core Dataset 2003-2017 (Release 2019). [Data Collection]. INDEPTH Network Data Repository. https://doi.org/10.7796/INDEPTH.MW011.CMD2017.v1

Dyble, M, Thorley, J, Page, AE, Smith, D and Migliano, AB (2019). Engagement in agricultural work is associated with reduced leisure time among Agta hunter-gatherers. [Data Collection]. Nature Human Behaviour. https://doi.org/10.1038/s41562-019-0614-6

E

Evangelopoulos, D, Prosser, GA, Rodgers, A, Dagg, BM, Khatri, B, Ho, MM, Gutierrez, MG and Cortes, T (2019). Comparative fitness analysis of D-cycloserine resistant mutants reveals both fitness-neutral and high-fitness cost genotypes. [Data Collection]. Nature Communications. https://doi.org/10.1038/s41467-019-12074-z

F

Falconer, J (2019). Search strategies for: "Interventions to improve drinking water supply and quality, sanitation and handwashing facilities in health care facilities, and their effect on health care-associated infections in low and middle-income countries: A systematic review and supplementary scoping review". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001074.

Fielding, K (2019). TB Fast Track dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001531.

Filippi, V, Cresswell, J, Yaogo, M, Ganaba, R, Powell-jackson, T, Soubeiga, A, Drabo, S, Storeng, K, Ilboudo, P, Ouedraogo, D and Some, H (2019). Productivity, family planning and reproductive health in Burkina Faso 2013-2014. [Data Collection]. UK Data Service. http://doi.org/10.5255/UKDA-SN-852089

Finger, F, Funk, S, White, K, Siddiqui, MR, Edmunds, WJ and Kucharski, AJ (2019). Real-time analysis of the diphtheria outbreak in forcibly displaced Myanmar nationals in Bangladesh. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.7829816.v1.

Fink, DL, Collins, S, Barret, R, Pollara, G, Marks, M and Logan, S (2019). Shortening duration of ertapenem in outpatient parenteral antimicrobial therapy for complicated urinary tract infections: A retrospective study. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0223130

Flasche, S (2019). Denvaxia-in-Phillippines. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3496819

Flueck, C, Drought, LG, Jones, A, Patel, A, Perrin, AJ, Walker, EM, Nofal, SD, Snijders, AP, Blackman, MJ and Baker, DA (2019). Phosphodiesterase beta is the master regulator of cAMP signalling during malaria parasite invasion. [Data Collection]. PLOS Biology. https://doi.org/10.1371/journal.pbio.3000154

Flueck, C, Drought, LG, Jones, A, Patel, A, Perrin, AJ, Walker, EM, Nofal, SD, Snijders, AP, Blackman, M and Baker, D (2019). Phosphodiesterase beta is the master regulator of cAMP signalling during malaria parasite invasion. [Data Collection]. PLoS Biology. https://doi.org/10.1371/journal.pbio.3000154

Forbes, H (2019). Clinical Code List - Acute Gastroenteritis - ICD-10 Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001194.

Forbes, H (2019). Clinical Code List - Acute Gastroenteritis - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001193.

Forbes, H (2019). Clinical Code List - Hip Fracture - ICD-10 Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001197.

Forbes, H (2019). Clinical Code List - Hip Fracture - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001196.

Forbes, H (2019). Clinical Code List - PHN - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001195.

Forbes, H (2019). Clinical Code List - Severe Immunesuppression CPRD - ICD-10 Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001192.

Forbes, H (2019). Clinical Code List - Severe Immunesuppression CPRD - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001191.

Forbes, H (2019). Clinical Code List - Varicella - ICD-10. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001186.

Forbes, H (2019). Clinical Code List - Varicella - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001185.

Forbes, H (2019). Clinical Code List - Zoster - ICD-10 Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001188.

Forbes, H (2019). Clinical Code List - Zoster - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001187.

Forbes, H (2019). Clinical Code List - Zoster Vaccine - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001190.

Forbes, H (2019). Therapy Code List - Zoster Vaccine - BNF Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001189.

Forbes, H and Strongman, H (2019). Covariate Code List - COPD. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001134.

Forbes, H and Strongman, H (2019). Covariate Code List - Immunosuppressive disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001138.

Forbes, H and Strongman, H (2019). Covariate Code List - Lupus. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001132.

Funk, S, Camacho, A, Kucharski, AJ, Lowe, R, Eggo, RM and Edmunds, WJ (2019). R Code accompanying the manuscript "Assessing the performance of real-time epidemic forecasts: A case study of Ebola in the Western Area region of Sierra Leone, 2014-15". [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.2547701

G

Georgiadou, A, Lee, HJ, Walther, M, van Beek, AE, Fitriani, F, Wouters, D, Kuijpers, TW, Nwakanma, D, Dalessandro, U, Riley, E, Otto, TD, Ghani, A, Levin, M, Coin, LJ, Conway, DJ, Bretscher, MT and Cunnington, AJ (2019). Modelling pathogen load dynamics to elucidate mechanistic determinants of host–Plasmodium falciparum interactions. [Data Collection]. Nature Microbiology. https://doi.org/10.1038/s41564-019-0474-x

Gibani, MM, Jones, E, Barton, A, Jin, C, Meek, J, Camara, S, Galal, U, Heinz, E, Rosenberg-Hasson, Y, Obermoser, G, Jones, C, Campbell, D, Black, C, Thomaides-Brears, H, Darlow, C, Dold, C, Silva-Reyes, L, Blackwell, L, Lara-Tejero, M, Jiao, X, Stack, G, Blohmke, CJ, Hill, J, Angus, B, Dougan, G, Galán, J and Pollard, AJ (2019). Investigation of the role of typhoid toxin in acute typhoid fever in a human challenge model. [Data Collection]. Nature Medicine. https://doi.org/10.1038/s41591-019-0505-4

Gladstone, RA, Lo, SW, Lees, JA, Croucher, NJ, van Tonder, AJ, Corander, J, Page, AJ, Marttinen, P, Bentley, LJ, Ochoa, TJ, Leung Ho, P, du Plessis, M, Cornick, JE, Kwambana-Adams, B, Benisty, R, Nzenze, SA, Madhi, SA, Hawkins, PA, Everett, DB, Antonio, M, Dagan, R, Klugman, KP, von Gottberg, A, McGee, L, Breiman, RF and Bentley, SD (2019). International genomic definition of pneumococcal lineages, to contextualise disease, antibiotic resistance and vaccine impact. [Data Collection]. EBio Medicine. https://doi.org/10.1016/j.ebiom.2019.04.021

Goldacre, B, Drysdale, H, Dale, A, Milosevic, I, Slade, E, Hartley, P, Marston, C, Powell-Smith, A, Heneghan, C and Mahtani, KR (2019). Additional file 2: of COMPare: a prospective cohort study correcting and monitoring 58 misreported trials in real time. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.7717361.v1

Gourlay, A, Birdthistle, I, Mthiyane, NT, Orindi, BO, Muuo, S, Kwaro, D, Shahmanesh, M, Baisley, K, Ziraba, A and Floyd, S (2019). Awareness and uptake of layered HIV prevention programming for young women: analysis of population-based surveys in three DREAMS settings in Kenya and South Africa. [Data Collection]. BMC Public Health. https://doi.org/10.1186/s12889-019-7766-1

Greenhall, G, Mansfield, KE, Nitsch, D, Iwagami, M, Leyrat, C, Johnston, R, Smeeth, L and Tomlinson, LA (2019). Clinical Codelist - Cardiac Failure. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Greenhall, G, Mansfield, KE, Nitsch, D, Iwagami, M, Leyrat, C, Johnston, R, Smeeth, L and Tomlinson, LA (2019). Clinical codelist - Alcohol status. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Greenhall, G, Mansfield, KE, Nitsch, D, Iwagami, M, Leyrat, C, Johnston, R, Smeeth, L and Tomlinson, LA (2019). Clinical codelist - Bone marrow suppression. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Greenhall, G, Mansfield, KE, Nitsch, D, Iwagami, M, Leyrat, C, Johnston, R, Smeeth, L and Tomlinson, LA (2019). Clinical codelist - Chronic hypoxic conditions. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Greenhall, G, Mansfield, KE, Nitsch, D, Iwagami, M, Leyrat, C, Johnston, R, Smeeth, L and Tomlinson, LA (2019). Clinical codelist - Diabetes codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Greenhall, G, Mansfield, KE, Nitsch, D, Iwagami, M, Leyrat, C, Johnston, R, Smeeth, L and Tomlinson, LA (2019). Clinical codelist - Hypertension. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001031.

Greenhall, G, Mansfield, KE, Nitsch, D, Iwagami, M, Leyrat, C, Johnston, R, Smeeth, L and Tomlinson, LA (2019). Clinical codelist - Ischaemic heart disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Greenhall, G, Mansfield, KE, Nitsch, D, Iwagami, M, Leyrat, C, Johnston, R, Smeeth, L and Tomlinson, LA (2019). Clinical codelist - Smoking status. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Greenland, K and White, S (2019). Observation notes for: "Selecting behaviour change priorities for trachoma ‘F’ and ‘E’ interventions: a formative research study in Oromia, Ethiopia". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001356.

Grint, D, McDonald, H, Walker, J, Amirthalingam, G, Andrews, N and Thomas, SL (2019). Post-Vaccine Zoster Disease - ICD-10 Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001339.

Grint, D, McDonald, H, Walker, J, Amirthalingam, G, Andrews, N and Thomas, SL (2019). Post-Vaccine Zoster Disease - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001338.

Gunasekara, CJ, Scott, CA, Laritsky, E, Baker, MS, MacKay, H, Duryea, JD, Kessler, NJ, Hellenthal, H, Wood, AC, Hodges, KR, Gandhi, M, Hair, AB, Silver, M, Moore, SE, Prentice, AM, Li, Y, Chen, R, Coarfa, C and Waterland, RA (2019). A genomic atlas of systemic interindividual epigenetic variation in humans. [Data Collection]. Genome Biology. https://doi.org/10.1186/s13059-019-1708-1

Gupta-Wright, A (2019). Mortality predictor score in hospitalised patients HIV-associated TB in Africa dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001026.

Gurdasani, D, Carstensen, T, Fatumo, S, Chen, G, Franklin, CS, Prado-Martinez, J, Bouman, H, Abascal, F, Haber, M, Tachmazidou, I, Mathieson, I, Ekoru, K, DeGorter, MK, Nsubuga, RN, Finan, C, Wheeler, E, Chen, L, Cooper, DN, Schiffels, S, Chen, Y, Ritchie, GR, Pollard, MO, Fortune, MD, Mentzer, AJ, Garrison, E, Bergström, A, Hatzikotoulas, K, Adeyemo, A, Doumatey, A, Elding, H, Wain, LV, Ehret, G, Auer, PL, Kooperberg, CL, Reiner, AP, Franceschini, N, Maher, DP, Montgomery, SB, Kadie, C, Widmer, C, Xue, Y, Seeley, J, Asiki, G, Kamali, A, Young, EH, Pomilla, C, Soranzo, N, Zeggini, E, Pirie, F, Morris, AP, Heckerman, D, Tyler-Smith, C, Motala, A, Rotimi, C, Kaleebu, P, Barroso, I and Sandhu, MS (2019). Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa. [Data Collection]. Cell. https://doi.org/10.1016/j.cell.2019.10.004

H

Halliday, K, Oswald, W, Mcharo, C, Beaumont, E, Gichuki, P, Kepha, S, Witek-mcmanus, S, Matendechero, S, El-Busaidy, H, Muendo, R, Chiguzo, A, Cano, J, Karanja, M, Musyoka, L, Safari, T, Mutisya, L, Muye, I, Sidigu, M, Anderson, R, Allen, E, Brooker, S, Mwandawiro, C, Njenga, S and Pullan, RL (2019). Household and Parasitology Survey, Kwale County, Kenya, 2015. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001170.

Handireketi, N, Timire, C, Shewade, HD, Munemo, E, Nyagupe, C, Chipuka, S, Sisya, L, Dhitima, E and Harries, AD (2019). Can visual interpretation of NucliSens graphs reduce the need for repeat viral load testing? [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0223597

Hawkey, J, Le Hello, S, Doublet, B, Granier, SA, Hendriksen, RS, Fricke, WF, Ceyssens, P, Gomart, C, Billman-Jacobe, H, Holt, KE and Weill, F (2019). Global phylogenomics of multidrug-resistant Salmonella enterica serotype Kentucky ST198. [Data Collection]. Microbial Genomics. https://doi.org/10.1099/mgen.0.000269

Heinz, E, Brindle, R, Morgan-McCalla, A, Peters, K and Thomson, N (2019). Supporting data for: "Caribbean multi-centre study of Klebsiella pneumoniae: whole-genome sequencing, antimicrobial resistance and virulence factors". [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.7867760.v1

Hensen, B, Ayles, H, Mulubwa, C, Floyd, S, Schaap, A, Chiti, B, Phiri, M, Mwenge, L, Simwinga, M, Fidler, S, Hayes, R, Bond, V and Mwinga, A (2019). Community-based distribution of oral HIV self-testing kits: experimental evidence from Zambia. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/NGY29G

Herrett, E, Cook, S, Mansfield, KE, Crellin, E, Smeeth, L, Quint, JK and Denholm, R (2019). CPRD medcodes for liver disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001083.

Herrett, E, Cook, S, Mansfield, KE, Crellin, E, Smeeth, L, Quint, JK and Denholm, R (2019). Clinical Codelist - Read codes for Anxiety. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001080.

Herrett, E, Cook, S, Mansfield, KE, Crellin, E, Smeeth, L, Quint, JK and Denholm, R (2019). Clinical Codelist - Read codes for Depression. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001081.

Herrett, E, Cook, S, Mansfield, KE, Crellin, E, Smeeth, L, Quint, JK and Denholm, R (2019). Clinical Codelist - Read codes for Diabetes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001079.

Herrett, E, Cook, S, Mansfield, KE, Crellin, E, Smeeth, L, Quint, JK and Denholm, R (2019). Clinical Codelist - Read codes for Hypertension. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001082.

Herrett, E, Cook, S, Mansfield, KE, Crellin, E, Smeeth, L, Quint, JK and Denholm, R (2019). Clinical code list - Read codes for any alcohol related code. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001084.

Herrett, E, Cook, S, Mansfield, KE, Crellin, E, Smeeth, L, Quint, JK and Denholm, R (2019). Clinical code list - Read codes indicating AUDIT or FAST screening. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001086.

Herrett, E, Cook, S, Mansfield, KE, Crellin, E, Smeeth, L, Quint, JK and Denholm, R (2019). Clinical code list - Read codes relating to alcohol drinking status or level of use. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001085.

Hidano, A and Gates, MC (2019). Molecular Simulation. [Data Collection]. Github repository. https://github.com/arata-hidano/Molecular_simulation

Homolka, S, Zallet, J, Albert, H, Witt, A and Kranzer, K (2019). Acceptability and sensory qualities of fortified rice in Nepal. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.9888155.v2

Homolka, S, Zallet, J, Albert, H, Witt, A and Kranzer, K (2019). Microscopy and contamination rates. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.9882935.v1

Hoshi, T, Brugman, V, Sato, S, Ant, T, Tojo, B, Masuda, G, Kaneko, S, Moji, K, Medlock, JM and Logan, J (2019). Field testing of a lightweight, inexpensive, and customisable 3D-printed mosquito light trap in the UK. [Data Collection]. Scientific Reports. https://doi.org/10.1038/s41598-019-47511-y

Hossain, M (2019). Evaluation of gender-based violence (GBV) case management services in the Dadaab refugee camps. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001511.

I

Ingle, DJ, Nair, S, Hartman, H, Ashton, PM, Dyson, ZA, Day, M, Freedman, J, Chattaway, MA, Holt, KE and Dallman, TJ (2019). Informal genomic surveillance of regional distribution of Salmonella Typhi genotypes and antimicrobial resistance via returning travellers. [Data Collection]. PLoS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0007620

J

James, P, Jawla, O, Mohammed, N, Ceesay, K, Akemokwe, F, Sonko, B, Sise, E, Prentice, A and Silver, M (2019). A novel nutritional supplement to reduce plasma homocysteine in nonpregnant women: A randomised controlled trial in The Gambia. [Data Collection]. PLOS Medicine.

K

Karuga, RN, Mireku, M, Muturi, N, McCollum, R, Vallieres, F, Kumar, M, Taegtmeyer, M and Otiso, L (2019). Supportive supervision of close-to-community providers of health care: Findings from action research conducted in two counties in Kenya. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0216444

Kavishe, B, Vanobberghen, F, Katende, D, Kapiga, S, Munderi, P, Baisley, K, Biraro, S, Mosha, N, Mutungi, G, Mghamba, J, Hughes, P, Smeeth, L, Grosskurth, H and Peck, R (2019). Dyslipidemias and cardiovascular risk scores in urban and rural populations in north-western Tanzania and southern Uganda. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0223189

Keogh, R (2019). An online survey of adults with cystic fibrosis: accessing and using life expectancy information. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001077.

Keogh, R and Bartlett, J (2019). Measurement error correction methods applied to NHANES data. [Data Collection]. Github. https://github.com/ruthkeogh/meas_error_handbook

Khatab, K, Raheem, MA, Sartorius, B and Ismail, M (2019). Prevalence and risk factors for child labour and violence against children in Egypt using Bayesian geospatial modelling with multiple imputation. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0212715

Kitonsa, J, Mayanja, Y, Aling, E, Kiwanuka, J, Namutundu, J, Anywaine, Z, Ggayi, A, Kibengo, F, Kiwanuka, N and Kaleebu, P (2019). Factors affecting mortality among HIV positive patients two years after completing recommended therapy for Cryptococcal meningitis in Uganda. S1 Dataset. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0210287.s001

Knight, G (2019). gwenknight/empiricprescribing. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3418998

Knuepfer, E, Wright, KE, Kumar Prajapati, S, Rawlinson, TA, Mohring, F, Koch, M, Lyth, OR, Howell, SA, Villasis, E, Snijders, AP, Moon, RW, Draper, SJ, Rosanas-urgell, A, Higgins, MK, Baum, J and Holder, AA (2019). Divergent roles for the RH5 complex components, CyRPA and RIPR in human-infective malaria parasites. [Data Collection]. PLOS Pathogens. https://doi.org/10.1371/journal.ppat.1007809

Kumar, N, Browne, HP, Viciani, E, Forster, SC, Clare, S, Harcourt, K, Stares, MD, Dougan, G, Fairley, DJ, Roberts, P, Pirmohamed, M, Clokie, MRJ, Jensen, MBF, Hargreaves, KR, Ip, M, Wieler, LH, Seyboldt, C, Norén, T, Riley, TV, Kuijper, EJ, Wren, BW and Lawley, TD (2019). Adaptation of host transmission cycle during Clostridium difficile speciation. [Data Collection]. Nature Genetics. https://doi.org/10.1038/s41588-019-0478-8

Kwena, ZA, Njuguna, SW, Ssetala, A, Seeley, J, Nielsen, L, De Bont, J and Bukusi, EA (2019). HIV prevalence, spatial distribution and risk factors for HIV infection in the Kenyan fishing communities of Lake Victoria. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0214360

Kwizera, R, Cresswell, FV, Mugumya, G, Okirwoth, M, Kagimu, E, Bangdiwala, AS, Williams, DA, Rhein, J, Boulware, DR and Meya, DB (2019). CSFLAM_data set revised. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.9415853.v1

Küpers, LK, Monnereau, C, Sharp, GC, Yousefi, P, Salas, LA, Ghantous, AG, Page, CM, Reese, SE, Wilcox, AJ, Czamara, D, Starling, AP, Novoloaca, A, Lent, S, Roy, R, Hoyo, C, Breton, CV, Allard, C, Just, AC, Bakulski, KM, Holloway, JW, Everson, TM, Xu, C, Huang, R, van der Plaat, DA, Wielscher, M, Kebede Merid, S, Ullemar, V, Rezwan, FI, Lahti, J, van Dongen, J, Langie, SA, Richardson, TG, Magnus, MC, Nohr, EA, Xu, Z, Duijts, L, Zhao, S, Zhang, W, Plusquin, M, DeMeo, DL, Solomon, O, Heimovaara, JH, Jima, DD, Gao, L, Bustamante, M, Perron, P, Wright, RO, Hertz-Picciotto, I, Zhang, H, Karagas, MR, Gehring, U, Marsit, CJ, Beilin, LJ, Vonk, JM, Jarvelin, M, Bergström, A, Örtqvist, AK, Ewart, S, Villa, PM, Moore, S, Willemsen, G, Standaert, AR, Håberg, SE, Sørensen, TI, Taylor, JA, Räikkönen, K, Yang, IV, Kechris, K, Nawrot, TS, Silver, MJ, Gong, YY, Richiardi, L, Kogevinas, M, Litonjua, AA, Eskenazi, B, Huen, K, Mbarek, H, Maguire, RL, Dwyer, T, Vrijheid, M, Bouchard, L, Baccarelli, AA, Croen, LA, Karmaus, W, Anderson, D, de Vries, M, Sebert, S, Kere, J, Karlsson, R, Hasan Arshad, S, Hämäläinen, E, Routledge, MN, Boomsma, DI, Feinberg, AP, Newschaffer, CJ, Govarts, E, Moisse, M, Fallin, MD, Melén, E, Prentice, AM, Kajantie, E, Almqvist, C, Oken, E, Dabelea, D, Boezen, HM, Melton, PE, Wright, RJ, Koppelman, GH, Trevisi, L, Hivert, M, Sunyer, J, Munthe-Kaas, MC, Murphy, SK, Corpeleijn, E, Wiemels, J, Holland, N, Herceg, Z, Binder, EB, Smith, GD, Jaddoe, VW, Lie, RT, Nystad, W, London, SJ, Lawlor, DA, Relton, CL, Snieder, H and Felix, JF (2019). Meta-analysis of epigenome-wide association studies in neonates reveals widespread differential DNA methylation associated with birthweight. [Data Collection]. Nature Communications. https://doi.org/10.1038/s41467-019-09671-3

L

Lam, MMC, Wyres, KL, Wick, RR, Judd, LM, Fostervold, A, Holt, KE and Löhr, IH (2019). Convergence of virulence and MDR in a single plasmid vector in MDR Klebsiella pneumoniae ST15. [Data Collection]. Journal of Antimicrobial Chemotherapy. https://doi.org/10.1093/jac/dkz028

Law, PJ, Timofeeva, M, Fernandez-Rozadilla, C, Broderick, P, Studd, J, Fernandez-Tajes, J, Farrington, S, Svinti, V, Palles, C, Orlando, G, Sud, A, Holroyd, A, Penegar, S, Theodoratou, E, Vaughan-Shaw, P, Campbell, H, Zgaga, L, Hayward, C, Campbell, A, Harris, S, Deary, IJ, Starr, J, Gatcombe, L, Pinna, M, Briggs, S, Martin, L, Jaeger, E, Sharma-Oates, A, East, J, Leedham, S, Arnold, R, Johnstone, E, Wang, H, Kerr, D, Kerr, R, Maughan, T, Kaplan, R, Al-Tassan, N, Palin, K, Hänninen, UA, Cajuso, T, Tanskanen, T, Kondelin, J, Kaasinen, E, Sarin, A, Eriksson, JG, Rissanen, H, Knekt, P, Pukkala, E, Jousilahti, P, Salomaa, V, Ripatti, S, Palotie, A, Renkonen-Sinisalo, L, Lepistö, A, Böhm, J, Mecklin, J, Buchanan, DD, Win, A, Hopper, J, Jenkins, ME, Lindor, NM, Newcomb, PA, Gallinger, S, Duggan, D, Casey, G, Hoffmann, P, Nöthen, MM, Jöckel, K, Easton, DF, Pharoah, PD, Peto, J, Canzian, F, Swerdlow, A, Eeles, RA, Kote-Jarai, Z, Muir, K, Pashayan, N, Harkin, A, Allan, K, McQueen, J, Paul, J, Iveson, T, Saunders, M, Butterbach, K, Chang-Claude, J, Hoffmeister, M, Brenner, H, Kirac, I, Matošević, P, Hofer, P, Brezina, S, Gsur, A, Cheadle, JP, Aaltonen, LA, Tomlinson, I, Houlston, RS and Dunlop, MG (2019). Association analyses identify 31 new risk loci for colorectal cancer susceptibility. [Data Collection]. Nature Communications. https://doi.org/10.1038/s41467-019-09775-w

Lee, AH, Shannon, CP, Amenyogbe, N, Bennike, TB, Diray-Arce, J, Idoko, OT, Gill, EE, Ben-Othman, R, Pomat, WS, van Haren, SD, Cao, KL, Cox, M, Darboe, A, Falsafi, R, Ferrari, D, Harbeson, DJ, He, D, Bing, C, Hinshaw, SJ, Ndure, J, Njie-jobe, J, Pettengill, MA, Richmond, PC, Ford, R, Saleu, G, Masiria, G, Matlam, JP, Kirarock, W, Roberts, EHW, Malek, M, Sanchez-Schmitz, G, Singh, A, Angelidou, A, Smolen, KK, Brinkman, RR, Ozonoff, A, Hancock, REW, van den Biggelaar, AHJ, Steen, H, Tebbutt, SJ, Kampmann, B, Levy, O and Kollmann, TR (2019). Dynamic molecular changes during the first week of human life follow a robust developmental trajectory. [Data Collection]. Nature Communications. https://doi.org/10.1038/s41467-019-08794-x

Leurent, B, Gomes, M, Cro, S, Wiles, N and Carpenter, JR (2019). CEmimix Stata do-file - First version. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.8168021.v1

Library & Archives Service, L (2019). LSHTM Data Compass Procedures. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000002.

London School of Hygiene & Tropical Medicine (2019). Comparing antimicrobial resistance prediction pipelines from bacterial whole genome sequencing data: An inter-laboratory study. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/data/view/PRJEB34513

London School of Hygiene & Tropical Medicine (2019). Genome-wide analysis of population structure and adaptation of Plasmodium knowlesi in peninsular Malaysia. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/data/view/PRJEB33025

London School of Hygiene & Tropical Medicine (2019). Selective Whole Genome Amplification of Plasmodium malariae DNA from clinical samples reveals high genetic diversity and population structure of this neglected malaria parasite. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/data/view/PRJEB33837

London School of Hygiene & Tropical Medicine (2019). Transgenic P. knowlesi orthologue replacement lines provide surrogates for P. vivax vaccine development and Duffy Binding Protein tropism studies. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/data/view/PRJEB30925

London School of Hygiene & Tropical Medicine (2019). An inter-laboratory study to investigate the impact of the bioinformatics component on microbiome analysis. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/data/view/PRJEB34919

Lowe, K, Mansfield, KE, Antonella, D, Smeeth, L, Roberts, A, Abuabara, K, Prieto-Alhambra, D and Langan, S (2019). Clinical Code List - Proximal Humerus Fractures - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001172.

Lowe, K, Mansfield, KE, Delmestri, A, Smeeth, L, Roberts, A, Abuabara, K, Prieto-Alhambra, D and Langan, S (2019). Clinical Code List - Asthma - ICD-10. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001184.

Lowe, K, Mansfield, KE, Delmestri, A, Smeeth, L, Roberts, A, Abuabara, K, Prieto-Alhambra, D and Langan, S (2019). Clinical Code List - Asthma - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001176.

Lowe, K, Mansfield, KE, Delmestri, A, Smeeth, L, Roberts, A, Abuabara, K, Prieto-Alhambra, D and Langan, S (2019). Clinical Code List - Diabetes - ICD-10. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001174.

Lowe, K, Mansfield, KE, Delmestri, A, Smeeth, L, Roberts, A, Abuabara, K, Prieto-Alhambra, D and Langan, S (2019). Clinical Code List - Diabetes - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001177.

Lowe, K, Mansfield, KE, Delmestri, A, Smeeth, L, Roberts, A, Abuabara, K, Prieto-Alhambra, D and Langan, S (2019). Clinical Code List - Eczema - ICD-10. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001175.

Lowe, K, Mansfield, KE, Delmestri, A, Smeeth, L, Roberts, A, Abuabara, K, Prieto-Alhambra, D and Langan, S (2019). Clinical Code List - Eczema Diagnosis - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001180.

Lowe, K, Mansfield, KE, Delmestri, A, Smeeth, L, Roberts, A, Abuabara, K, Prieto-Alhambra, D and Langan, S (2019). Clinical Code List - Eczema Therapy - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001179.

Lowe, K, Mansfield, KE, Delmestri, A, Smeeth, L, Roberts, A, Abuabara, K, Prieto-Alhambra, D and Langan, S (2019). Clinical Code List - Fractures - ICD-10. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001159.

Lowe, K, Mansfield, KE, Delmestri, A, Smeeth, L, Roberts, A, Abuabara, K, Prieto-Alhambra, D and Langan, S (2019). Clinical Code List - Fractures - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001166.

Lowe, K, Mansfield, KE, Delmestri, A, Smeeth, L, Roberts, A, Abuabara, K, Prieto-Alhambra, D and Langan, S (2019). Clinical Code List - Harmful Alcohol Use - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001182.

Lowe, K, Mansfield, KE, Delmestri, A, Smeeth, L, Roberts, A, Abuabara, K, Prieto-Alhambra, D and Langan, S (2019). Clinical Code List - Hip Fractures - ICD-10. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001160.

Lowe, K, Mansfield, KE, Delmestri, A, Smeeth, L, Roberts, A, Abuabara, K, Prieto-Alhambra, D and Langan, S (2019). Clinical Code List - Hip Fractures - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001167.

Lowe, K, Mansfield, KE, Delmestri, A, Smeeth, L, Roberts, A, Abuabara, K, Prieto-Alhambra, D and Langan, S (2019). Clinical Code List - Pelvic Fractures - ICD-10. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001161.

Lowe, K, Mansfield, KE, Delmestri, A, Smeeth, L, Roberts, A, Abuabara, K, Prieto-Alhambra, D and Langan, S (2019). Clinical Code List - Pelvis Fractures - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001168.

Lowe, K, Mansfield, KE, Delmestri, A, Smeeth, L, Roberts, A, Abuabara, K, Prieto-Alhambra, D and Langan, S (2019). Clinical Code List - Phototherapy - OPCS. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001183.

Lowe, K, Mansfield, KE, Delmestri, A, Smeeth, L, Roberts, A, Abuabara, K, Prieto-Alhambra, D and Langan, S (2019). Clinical Code List - Proximal Humerus Fractures - ICD-10. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001164.

Lowe, K, Mansfield, KE, Delmestri, A, Smeeth, L, Roberts, A, Abuabara, K, Prieto-Alhambra, D and Langan, S (2019). Clinical Code List - Proximal Humerus Fractures Sensitivity Analysis - ICD-10. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001165.

Lowe, K, Mansfield, KE, Delmestri, A, Smeeth, L, Roberts, A, Abuabara, K, Prieto-Alhambra, D and Langan, S (2019). Clinical Code List - Proximal Humerus Fractures Sensitivity Analysis - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001173.

Lowe, K, Mansfield, KE, Delmestri, A, Smeeth, L, Roberts, A, Abuabara, K, Prieto-Alhambra, D and Langan, S (2019). Clinical Code List - Smoking - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001178.

Lowe, K, Mansfield, KE, Delmestri, A, Smeeth, L, Roberts, A, Abuabara, K, Prieto-Alhambra, D and Langan, S (2019). Clinical Code List - Spine Fractures - ICD-10. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001162.

Lowe, K, Mansfield, KE, Delmestri, A, Smeeth, L, Roberts, A, Abuabara, K, Prieto-Alhambra, D and Langan, S (2019). Clinical Code List - Spine Fractures - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001169.

Lowe, K, Mansfield, KE, Delmestri, A, Smeeth, L, Roberts, A, Abuabara, K, Prieto-Alhambra, D and Langan, S (2019). Clinical Code List - Wrist Fractures - ICD-10. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001163.

Lowe, K, Mansfield, KE, Delmestri, A, Smeeth, L, Roberts, A, Abuabara, K, Prieto-Alhambra, D and Langan, S (2019). Clinical Code List - Wrist Fractures - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001171.

Luque-fernandez, MA (2019). migariane/EASP_NET_SURV: Tutorial Net Survival. [Data Collection]. Github. https://github.com/migariane/EASP_NET_SURV/tree/v.1

Luque-fernandez, MA and Redondo, D (2019). migariane/hetmor: Effect modification and collapsibility when estimating the effect of public health interventions: A Monte-Carlo Simulation comparing classical multivariable regression adjustment versus the G-Formula based on a cancer epidemiology illustration. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.2560819

Luque-fernandez, MA, Thomas, A, Gelaye, B, Racape, J, Sanchez-Perez, MJ and Williams, MA (2019). Secular Trends in Stillbirth by Maternal Socioeconomic Status in Spain 2007-2015: A Population-Based Study of 4 million births. [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.2562363

M

Mandeng, SE, Awono-Ambene, HP, Bigoga, JD, Ekoko, WE, Binyang, J, Piameu, M, Mbakop, LR, Fesuh, BN, Mvondo, N, Tabue, R, Nwane, P, Mimpfoundi, R, Toto, JC, Kleinschmidt, I, Knox, TB, Mnzava, AP, Donnelly, MJ, Fondjo, E and Etang, J (2019). Spatial and temporal development of deltamethrin resistance in malaria vectors of the Anopheles gambiae complex from North Cameroon. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0212024

Mansfield, K (2019). Covariate Code List - Serum creatinine. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001136.

Mansfield, KE and Langan, S (2019). Clinical Code List - Atopic Eczema - ICD-10 Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001253.

Mansfield, KE and Langan, S (2019). Procedure Code List - Phototherapy for Atopic Eczema. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001257.

Mansfield, KE, Schmidt, SAJ, Darvalics, B, Mulick, A, Abuabara, K, Wong, A, Sørensen, HT, Smeeth, L, Bhaskaran, K, Silva, I, Silverwood, R and Langan, S (2019). Clinical Codelist - Smoking - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001285.

Mansfield, KE, Schmidt, SAJ, Darvalics, B, Mulick, A, Abuabara, K, Wong, A, Sørensen, HT, Smeeth, L, Bhaskaran, K, Silva, I, Silverwood, R and Langan, S (2019). Clinical Codelist - Asthma Dagnostic - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001279.

Mansfield, KE, Schmidt, SAJ, Darvalics, B, Mulick, A, Abuabara, K, Wong, A, Sørensen, HT, Smeeth, L, Bhaskaran, K, Silva, I, Silverwood, R and Langan, S (2019). Clinical Codelist - Asthma Diagnostic - ICD-10 Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001270.

Mansfield, KE, Schmidt, SAJ, Darvalics, B, Mulick, A, Abuabara, K, Wong, A, Sørensen, HT, Smeeth, L, Bhaskaran, K, Silva, I, Silverwood, R and Langan, S (2019). Clinical Codelist - Atopic Eczema Diagnostic - ICD-10 Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001275.

Mansfield, KE, Schmidt, SAJ, Darvalics, B, Mulick, A, Abuabara, K, Wong, A, Sørensen, HT, Smeeth, L, Bhaskaran, K, Silva, I, Silverwood, R and Langan, S (2019). Clinical Codelist - Atopic Eczema Diagnostic - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001281.

Mansfield, KE, Schmidt, SAJ, Darvalics, B, Mulick, A, Abuabara, K, Wong, A, Sørensen, HT, Smeeth, L, Bhaskaran, K, Silva, I, Silverwood, R and Langan, S (2019). Clinical Codelist - Atopic Eczema Therapy (Phototherapy) - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001282.

Mansfield, KE, Schmidt, SAJ, Darvalics, B, Mulick, A, Abuabara, K, Wong, A, Sørensen, HT, Smeeth, L, Bhaskaran, K, Silva, I, Silverwood, R and Langan, S (2019). Clinical Codelist - Cancer Diagnostic - ICD-10 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001272.

Mansfield, KE, Schmidt, SAJ, Darvalics, B, Mulick, A, Abuabara, K, Wong, A, Sørensen, HT, Smeeth, L, Bhaskaran, K, Silva, I, Silverwood, R and Langan, S (2019). Clinical Codelist - Cancer Diagnostic - ICD-9 codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001267.

Mansfield, KE, Schmidt, SAJ, Darvalics, B, Mulick, A, Abuabara, K, Wong, A, Sørensen, HT, Smeeth, L, Bhaskaran, K, Silva, I, Silverwood, R and Langan, S (2019). Clinical Codelist - Cancer Diagnostic - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Mansfield, KE, Schmidt, SAJ, Darvalics, B, Mulick, A, Abuabara, K, Wong, A, Sørensen, HT, Smeeth, L, Bhaskaran, K, Silva, I, Silverwood, R and Langan, S (2019). Clinical Codelist - Diabetes Mellitus Diagnostic - ICD-10 Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001273.

Mansfield, KE, Schmidt, SAJ, Darvalics, B, Mulick, A, Abuabara, K, Wong, A, Sørensen, HT, Smeeth, L, Bhaskaran, K, Silva, I, Silverwood, R and Langan, S (2019). Clinical Codelist - Diabetes Mellitus Diagnostic - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001280.

Mansfield, KE, Schmidt, SAJ, Darvalics, B, Mulick, A, Abuabara, K, Wong, A, Sørensen, HT, Smeeth, L, Bhaskaran, K, Silva, I, Silverwood, R and Langan, S (2019). Clinical Codelist - Harmful Alcohol Drinking - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001283.

Mansfield, KE, Schmidt, SAJ, Darvalics, B, Mulick, A, Abuabara, K, Wong, A, Sørensen, HT, Smeeth, L, Bhaskaran, K, Silva, I, Silverwood, R and Langan, S (2019). Clinical Codelist - Immunosuppression - ICD-10 Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001276.

Mansfield, KE, Schmidt, SAJ, Darvalics, B, Mulick, A, Abuabara, K, Wong, A, Sørensen, HT, Smeeth, L, Bhaskaran, K, Silva, I, Silverwood, R and Langan, S (2019). Clinical Codelist - Immunosuppression - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001284.

Mansfield, KE, Schmidt, SAJ, Darvalics, B, Mulick, A, Abuabara, K, Wong, A, Sørensen, HT, Smeeth, L, Bhaskaran, K, Silva, I, Silverwood, R and Langan, S (2019). Clinical Codelist - OPCS Codes - Procedures Associated with Immunosuppression. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001277.

Mansfield, KE, Schmidt, SAJ, Darvalics, B, Mulick, A, Abuabara, K, Wong, A, Sørensen, HT, Smeeth, L, Bhaskaran, K, Silva, I, Silverwood, R and Langan, S (2019). Clinical Codelist - Phototherapy - OPCS Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001278.

Marks, M, Sammut, T, Cabral, MG, da Silva, ET, Goncalves, A, Rodrigues, A, Manjuba, C, Nakutum, J, Ca, J, D'alessandro, U, Achan, J, Logan, J, Bailey, RL, Mabey, D, Last, AR and Walker, S (2019). The prevalence of scabies, pyoderma and other communicable dermatoses in the Bijagos Archipelago, Guinea-Bissau: S1 Data. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0007820.s002

Marlais, T (2019). Diagnostics development for the neglected parasitic diseases strongyloidiasis and visceral leishmaniasis. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/PUBS.04654991

Martinez-Vega, R, Jauneikaite, E, Koh, CT, Hui, YC, Huishi Chua, A, Khong, WX, Ban Hock, T, Guek Hong, JL, Venkatachalam, I, Anantharajah Tambyah, P, Hibberd, ML, Clarke, SC and Oon Tek, N (2019). Risk factor profiles and clinical outcomes for children and adults with pneumococcal infections in Singapore: A need to expand vaccination policy? [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0220951

Martinez-Vega, R, Jauneikaite, E, Thoon, KC, Chua, HY, Huishi Chua, A, Khong, WX, Tan, BH, Low Guek Hong, J, Venkatachalam, I, Anantharajah Tambyah, P, Hibberd, ML, Clarke, SC and Ng, OT (2019). Risk factor profiles and clinical outcomes for children and adults with pneumococcal infections in Singapore: A need to expand vaccination policy? [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0220951

Marukutira, T, Block, L, Alwano, MG, Behel, S, Jarvis, J, Chakalisa, U, Powis, K, Novitsky, V, Bapati, W, Wang, H, Ussery, F, Lebelonyane, R, Mills, LA, Moore, J and Bachanas, P (2019). Comparison of knowledge of HIV status and treatment coverage between non-citizens and citizens: Botswana Combination Prevention Project (BCPP). [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0221629

Matthews, A and Strongman, H (2019). Covariate Code List - Rheumatoid arthritis. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001131.

Mavaddat, N, Michailidou, K, Dennis, J, Lush, M, Fachal, L, Lee, A, Tyrer, JP, Chen, T, Wang, Q, Bolla, MK, Yang, X, Adank, MA, Ahearn, T, Aittomäki, K, Allen, J, Andrulis, IL, Anton-Culver, H, Antonenkova, NN, Arndt, V, Aronson, KJ, Auer, PL, Auvinen, P, Barrdahl, M, Beane Freeman, LE, Beckmann, MW, Behrens, S, Benitez, J, Bermisheva, M, Bernstein, L, Blomqvist, C, Bogdanova, NV, Bojesen, SE, Bonanni, B, Børresen-Dale, A, Brauch, H, Bremer, M, Brenner, H, Brentnall, A, Brock, IW, Brooks-Wilson, A, Brucker, SY, Brüning, T, Burwinkel, B, Campa, D, Carter, BD, Castelao, JE, Chanock, SJ, Chlebowski, R, Christiansen, H, Clarke, CL, Collée, JM, Cordina-Duverger, E, Cornelissen, S, Couch, FJ, Cox, A, Cross, SS, Czene, K, Daly, MB, Devilee, P, Dörk, T, Dos santos silva, I, Dumont, M, Durcan, L, Dwek, M, Eccles, DM, Ekici, AB, Eliassen, AH, Ellberg, C, Engel, C, Eriksson, M, Evans, DG, Fasching, PA, Figueroa, J, Fletcher, O, Flyger, H, Försti, A, Fritschi, L, Gabrielson, M, Gago-Dominguez, M, Gapstur, SM, García-Sáenz, JA, Gaudet, MM, Georgoulias, V, Giles, GG, Gilyazova, IR, Glendon, G, Goldberg, MS, Goldgar, DE, González-Neira, A, Grenaker Alnæs, GI, Grip, M, Gronwald, J, Grundy, A, Guénel, P, Haeberle, L, Hahnen, E, Haiman, CA, Håkansson, N, Ute Hamann, UH, Hankinson, SE, Harkness, EF, Hart, SN, He, W, Hein, A, Heyworth, J, Hillemanns, P, Hollestelle, A, Hooning, MJ, Hoover, RN, Hopper, JL, Howell, A, Huang, G, Humphreys, K, Hunter, DJ, Jakimovska, M, Jakubowska, A, Janni, W, John, EM, Johnson, N, Jones, ME, Jukkola-Vuorinen, A, Jung, A, Kaaks, R, Kaczmarek, K, Kataja, V, Keeman, R, Kerin, MJ, Khusnutdinova, E, Kiiski, JI, Knight, JA, Ko, Y, Kosma, V, Koutros, S, Kristensen, VN, Krüger, U, Kühl, T, Lambrechts, D, Le Marchand, L, Lee, E, Lejbkowicz, F, Lilyquist, J, Lindblom, A, Lindström, S, Lissowska, J, Lo, W, Loibl, S, Long, J, Lubiński, J, Lux, MP, MacInnis, RJ, Maishman, T, Makalic, E, Kostovska, IM, Mannermaa, A, Manoukian, S, Margolin, S, Martens, JW, Martinez, ME, Mavroudis, D, McLean, C, Meindl, A, Menon, U, Middha, P, Miller, N, Moreno, F, Mulligan, AM, Mulot, C, Muñoz-Garzon, VM, Neuhausen, SL, Nevanlinna, H, Neven, P, Newman, WG, Nielsen, SF, Nordestgaard, BG, Norman, A, Offit, K, Olson, JE, Olsson, H, Orr, N, Pankratz, VS, Park-Simon, T, Perez, JI, Pérez-Barrios, C, Peterlongo, P, Peto, J, Pinchev, M, Plaseska-Karanfilska, D, Polley, EC, Prentice, R, Presneau, N, Prokofyeva, D, Purrington, K, Pylkäs, K, Rack, B, Radice, P, Rau-Murthy, R, Rennert, G, Rennert, HS, Rhenius, V, Robson, M, Romero, A, Ruddy, KJ, Ruebner, M, Saloustros, E, Sandler, DP, Sawyer, EJ, Schmidt, DF, Schmutzler, RK, Schneeweiss, A, Schoemaker, MJ, Schumacher, F, Schürmann, P, Schwentner, L, Scott, C, Scott, RJ, Seynaeve, C, Shah, M, Sherman, ME, Shrubsole, MJ, Shu, X, Slager, S, Smeets, A, Sohn, C, Soucy, P, Southey, MC, Spinelli, JJ, Stegmaier, C, Stone, J, Swerdlow, AJ, Tamimi, RM, Tapper, WJ, Taylor, JA, Terry, MB, Thöne, K, Tollenaar, RA, Tomlinson, I, Truong, T, Tzardi, M, Ulmer, H, Untch, M, Vachon, CM, van Veen, EM, Vijai, J, Weinberg, CR, Wendt, C, Whittemore, AS, Wildiers, H, Willett, W, Winqvist, R, Wolk, A, Yang, XR, Yannoukakos, D, Zhang, Y, Zheng, W, Ziogas, A, Dunning, AM, Thompson, DJ, Chenevix-Trench, G, Chang-Claude, J, Schmidt, MK, Hall, P, Milne, RL, Pharoah, PD, Antoniou, AC, Chatterjee, N, Kraft, P, García-Closas, M, Simard, J and Easton, DF (2019). Polygenic Risk Scores for Prediction of Breast Cancer and Breast Cancer Subtypes. [Data Collection]. AJHG. https://doi.org/10.1016/j.ajhg.2018.11.002

Mendes Jorge, M, Ouermi, L, Meissner, P, Compaoré, G, Coulibaly, B, Nebie, E, Krisam, J, Klose, C, Kieser, M, Jahn, A, Lu, G, D'Alessandro, U, Sié, A, Mockenhaupt, FP and Müller, O (2019). Safety and efficacy of artesunate-amodiaquine combined with either methylene blue or primaquine in children with falciparum malaria in Burkina Faso: A randomized controlled trial. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0222993.s003

Messina, JP, Brady, OJ, Golding, N, Kraemer, MU, Wint, GRW, Ray, SE, Pigott, DM, Shearer, FM, Johnson, K, Earl, L, Marczak, LB, Shirude, S, Davis Weaver, N, Gilbert, M, Velayudhan, R, Jones, P, Jaenisch, T, Scott, TW, Reiner Jr, RC and Hay, SI (2019). The current and future global distribution and population at risk of dengue. [Data Collection]. Nature Microbiology. https://doi.org/10.1038/s41564-019-0476-8

Miller, L, Chaudhri, S, Beaumont, D, Kayani, A, Javaid, K, Chaudhri, R, Edwards, P, Brenner, A, Roberts, I and Shakur-still, H (2019). WOMAN-2 Pilot Study Data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001109.

Minassian, C, Williams, R, Meeraus, WH, Smeeth, L, Campbell, OM and Thomas, S (2019). Methods to generate and validate a Pregnancy Register in the UK Clinical Practice Research Datalink primary care database. [Data Collection]. Pharmacoepidemiology & Drug Safety. https://doi.org/10.1002/pds.4811

Mota, JF, Lee, N, White, LV, Marin, FP, Saludar, NR, Solante, MB, Tactacan-Abrenica, RJC, Calapis, RW, Suzuki, M, Saito, N, Ariyoshi, K, Parry, CM, Edwards, T and Cox, SE (2019). Mid-upper arm circumference predicts death in adult patients admitted to a TB ward in the Philippines: A prospective cohort study. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.8003318.v1

Moyes, CL, Wiebe, A, Gleave, K, Trett, A, Hancock, PA, Padonou, GG, Chouaïbou, MS, Sovi, A, Abuelmaali, SA, Ochomo, E, Antonio-Nkondjio, C, Dengela, D, Kawada, H, Dabire, RK, Donnelly, MJ, Mbogo, C, Fornadel, C and Coleman, M (2019). Data from: Analysis-ready datasets for insecticide resistance phenotype and genotype frequency in African malaria vectors. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.dn4676s

Mugisha, J (2019). Data for: Feasibility of village health teams (VHTs) in using a smart phone guided intervention to link older Ugandans with chronic conditions to care. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001699.

Mugisha, J, Mokaya, J, Bukenya, D, Ssembajja, F, Mayambala, D, Newton, R, Matthews, PC and Seeley, J (2019). A Study of Knowledge, Experience, and Beliefs About Hepatitis B Virus (HBV) Infection in South Western Uganda. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.8340860.v1

Musicha, P, Msefula, CL, Mather, AE, Chaguza, C, Cain, AK, Peno, C, Kallonen, T, Khonga, M, Denis, B, Gray, KJ, Heyderman, RS, Thomson, NR, Everett, DB and Feasey, NA (2019). Genomic analysis of Klebsiella pneumoniae isolates from Malawi reveals acquisition of multiple ESBL determinants across diverse lineages. [Data Collection]. Journal of Antimicrobial Chemotherapy. https://doi.org/10.1093/jac/dkz032

N

NDiaye, JL and Milligan, P (2019). Data for: "Seasonal Malaria Chemoprevention combined with Community Case Management of malaria in children under 10 years of age, over 5 months, in southern Senegal: a cluster-randomized trial". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001017.

Nyirenda, M, Crampin, AC, Mclean, E, Price, A, Branson, K and Kanjala, C (2019). Malawi Epidemiology and Intervention Research Unit Non-Communicable Disease Survey data, 2013-2017. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000961.

O

O'reilly, K, Hendrickx, E, Kharisma, DD, Wilastonegoro, NN, Carrington, LB, Elyazar, IRF, Kucharsk, AJ, Lowe, R, Flasche, S, Pigott, DM, Reiner Jr, RC, Edmunds, J, Hay, SI, Yakob, L, Shepard, DS and Brady, O (2019). Data and code from: Estimating the burden of dengue and the impact of release of wMel Wolbachia infected mosquitoes in Indonesia: a modelling study. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.8243168.v1

Obolski, U, Perez, PN, Villabona Arenas, J, Thézé, J, Faria, NR and Lourenço, J (2019). MVSE: An R‐package that estimates a climate‐driven mosquito‐borne viral suitability index. [Data Collection]. Methods in Ecology and Evolution. https://doi.org/10.1111/2041-210X.13205

Oswald, W, Halliday, K, Mcharo, C, Witek-McManus, S, Kepha, S, Gichuki, PM, Cano, J, Diaz-Ordaz, K, Allen, E, Mwandawiro, CS, Anderson, RM, Brooker, S, Pullan, RL and Njenga, SM (2019). Sanitation conditions and STH infection among school-aged children in Kwale County, Kenya, 2015. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001306.

Otieno, GP, Bottomley, C, Khagayi, S, Ogwel, B and Nokes, DJ (2019). Replication Data for: Impact of the introduction of rotavirus vaccine on hospital admissions for diarrhoea among children in Kenya: A controlled interrupted time series analysis. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/PH4COG

O’Connor, D, Png, E, Khor, CC, Snape, MD, Hill, AV, van der Klis, F, Hoggart, C, Levin, M, Hibberd, ML and Pollard, AJ (2019). Common Genetic Variations Associated with the Persistence of Immunity following Childhood Immunization. [Data Collection]. Cell Reports. https://doi.org/10.1016/j.celrep.2019.05.053

P

Paixão, ES, Rodrigues, MS, Cardim, LL, Oliveira, JF, L. C., C, Costa, Maria da Conceição N., Barreto, ML, Rodrigues, LC, Smeeth, L, Andrade, RFS, Oliveira, WK and Teixeira, MG (2019). Impact evaluation of Zika epidemic on congenital anomalies registration in Brazil: An interrupted time series analysis. [Data Collection]. PLoS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0007721

Patel, A, Perrin, AJ, Flynn, HR, Bisson, C, Withers-Martinez, C, Treeck, M, Flueck, C, Nicastro, G, Martin, SR, Ramos, A, Gilberger, TW, Snijders, AP, Blackman, MJ and Baker, D (2019). Cyclic AMP signalling controls key components of malaria parasite host cell invasion machinery. [Data Collection]. PLoS Biology. https://doi.org/10.1371/journal.pbio.3000264

Pearson, C, Abbas, KM, Clifford, S, Flasche, S and Hladish, TJ (2019). denvax: Simple Dengue Test and Vaccinate Cost Thresholds. [Data Collection]. The Comprehensive R Archive Network. https://cran.r-project.org/web/packages/denvax/index.html

Penn-Nicholson, A, Hraha, T, Thompson, EG, Sterling, D, Kimbung Mbandi, S, Wall, K, Fisher, M, Suliman, S, Shankar, S, Hanekom, WA, Janjic, N, Hatherill, M, Kaufmann, SH, Sutherland, J, Walzl, G, De Groote, MA and Ochsner, U (2019). Discovery and validation of a prognostic proteomic signature for tuberculosis progression: A prospective cohort study. [Data Collection]. PLOS Medicine. https://doi.org/10.1371/journal.pmed.1002781

Pett, H, Bradley, J, Okebe, J, Dicko, A, Tiono, AB, Goncalves, B, Stone, WJR, Chen, I, Lanke, K, Neuvonen, M, Mustaniemi, A, Eziefula, AC, Gosling, R, Dalessandro, U, Drakeley, C, Niemi, M and Bousema, T (2019). CYP2D6 polymorphisms and the safety and gametocytocidal activity of single dose primaquine for P. falciparum. [Data Collection]. Antimicrobial Agents & Chemotherapy. https://doi.org/10.1128/aac.00538-19

Phelan, J, O’Sullivan, DM, Machado, D, Ramos, J, Oppong, YE, Campino, S, O’Grady, J, McNerney, R, Hibberd, ML, Viveiros, M, Huggett, JF and Clark, TG (2019). Additional file 1: of Integrating informatics tools and portable sequencing technology for rapid detection of resistance to anti-tuberculous drugs. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.8318861.v1

Pickering, H, Palmer, CD, Houghton, J, Makalo, P, Joof, H, Derrick, T, Goncalves, A, Mabey, D, Bailey, R, Burton, M, Roberts, C, Burr, SE and Holland, M (2019). Conjunctival Microbiome-Host Responses Are Associated With Impaired Epithelial Cell Health in Both Early and Late Stages of Trachoma. [Data Collection]. Frontiers in Cellular and Infection Microbiology. https://doi.org/10.3389/fcimb.2019.00297

Pisani, E, Nistor, A, Hasnida, A, Parmaksiz, K, Xu, J and Kok, MO (2019). Supporting data for: Identifying market risk for substandard and falsified medicines: an analytic framework based on qualitative research in China, Indonesia, Turkey and Romania. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/0GGI9D

Prussing, C, Saavedra, MP, Bickersmith, SA, Alava, F, Guzman, M, Manrique, E, Carrasco-Escobar, G and Moreno, M (2019). Malaria vector species in Amazonian Peru co-occur in larval habitats but have distinct larval microbial communities. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0007412

Prüss-Ustün, A, Wolf, J, Bartram, J, Clasen, T, Cumming, O, Freeman, MC, Gordon, B, Hunter, PR, Medlicott, K and Johnston, R (2019). Burden of disease from inadequate water, sanitation and hygiene for selected adverse health outcomes: An updated analysis with a focus on low- and middle-income countries. [Data Collection]. International Journal of Hygiene and Environmental Health. https://doi.org/10.1016/j.ijheh.2019.05.004

Pullan, RL, Halliday, K, Oswald, W, Mcharo, C, Beaumont, E, Kepha, S, Witek-McManus, S, Gichuki, PM, Allen, E, Drake, T, Pitt, C, Matendechero, S, Gwayi-Chore, MC, Anderson, RM, Njenga, SM, Brooker, S and Mwandawiro, CS (2019). Household and Parasitology Surveys, Kwale County, Kenya, 2015-2017. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001305.

R

Ramadhani, A, Derrick, T, Macleod, D, Massae, P, Malisa, A, Mbuya, K, Mtuy, T, Makupa, W, Roberts, CH, Bailey, RL, Mabey, D, Holland, MJ and Burton, MJ (2019). Ocular immune responses, Chlamydia trachomatis infection and clinical signs of trachoma before and after azithromycin mass drug administration in a treatment naïve trachoma-endemic Tanzanian community. [Data Collection]. PLoS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0007559

Root, A (2019). Clinical Codelist - ADHD Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001431.

Root, A (2019). Clinical Codelist - Appendicectomy Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001433.

Root, A (2019). Clinical Codelist - Depression codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001434.

Root, A (2019). Clinical Codelist - Glioma Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001435.

Root, A (2019). Clinical Codelist - Intellectual Disability Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001436.

Root, A (2019). Clinical Codelist - Osgood–Schlatter disease codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001437.

Root, A (2019). Therapy Codelist - ADHD Medication Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001432.

Rylance, S, Ferrand, R, Bandason, T and McHugh, G (2019). ZENITH spirometry of older children and adolescents living with HIV in Zimbabwe. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001045.

Rylance, S, Ferrand, R, McHugh, G and Bandason, T (2019). INHALE spirometry of older children and adolescents living with HIV and on ART in Zimbabwe. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001046.

S

Sallum, MAM, Conn, JE, Bergo, ES, Laporta, GZ, Chaves, LS, Bickersmith, SA, de Oliveira, TM, Figueira, EAG, Moresco, G, Lêuda, O, Struchiner, CJ, Yakob, L and Massad, E (2019). Vector competence, vectorial capacity of Nyssorhynchus darlingi and the basic reproduction number of Plasmodium vivax in agricultural settlements in the Amazonian Region of Brazil. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.7956500.v1

Sanya, R and Webb, E (2019). Contrasting impact of rural, versus urban, living on glucose metabolism and blood pressure in Uganda. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001528.

Saralamba, N, Nosten, F, Sutherland, CJ, Paula Arez, A, Snounou, G, White, NJ, Day, NP, Dondorp, AM and Imwong, M (2019). Genetic dissociation of three antigenic genes in Plasmodium ovale curtisi and Plasmodium ovale wallikeri. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0217795

Schmidt, SAJ and Langan, S (2019). Clinical Code List - Alcohol - ICD-10 Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001230.

Schmidt, SAJ and Langan, S (2019). Clinical Code List - Alcohol - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001229.

Schmidt, SAJ and Langan, S (2019). Clinical Code List - Alcohol Use - ICD-10 Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001319.

Schmidt, SAJ and Langan, S (2019). Clinical Code List - Alcohol Use - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001318.

Schmidt, SAJ and Langan, S (2019). Clinical Code List - Charlson Comorbidity - ICD-10 Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001233.

Schmidt, SAJ and Langan, S (2019). Clinical Code List - Charlson Comorbidity - ICD-10 Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001322.

Schmidt, SAJ and Langan, S (2019). Clinical Code List - Charlson Comorbidity - OPCS Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001234.

Schmidt, SAJ and Langan, S (2019). Clinical Code List - Charlson Comorbidity - OPCS Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001323.

Schmidt, SAJ and Langan, S (2019). Clinical Code List - Charlson Comorbidity - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001232.

Schmidt, SAJ and Langan, S (2019). Clinical Code List - Charlson Comorbidity - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001321.

Schmidt, SAJ and Langan, S (2019). Clinical Code List - Diabetes - ICD-10 Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001236.

Schmidt, SAJ and Langan, S (2019). Clinical Code List - Diabetes - ICD-10 Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001325.

Schmidt, SAJ and Langan, S (2019). Clinical Code List - Diabetes - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001235.

Schmidt, SAJ and Langan, S (2019). Clinical Code List - Diabetes - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001324.

Schmidt, SAJ and Langan, S (2019). Clinical Code List - Melanoma - ICD-10 Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001332.

Schmidt, SAJ and Langan, S (2019). Clinical Code List - Melanoma - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001331.

Schmidt, SAJ and Langan, S (2019). Clinical Code List - Smoking Use - ICD-10 Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001259.

Schmidt, SAJ and Langan, S (2019). Clinical Code List - Smoking Use - ICD-10 Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001328.

Schmidt, SAJ and Langan, S (2019). Clinical Code List - Smoking Use - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001258.

Schmidt, SAJ and Langan, S (2019). Clinical Code List - Smoking Use - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001327.

Schmidt, SAJ and Langan, S (2019). Clinical Code List - Terminal Disease - ICD-10 Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001260.

Schmidt, SAJ and Langan, S (2019). Clinical Code List - Terminal Disease - ICD-10 Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001330.

Schmidt, SAJ and Langan, S (2019). Clinical Code List - Terminal Disease - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001261.

Schmidt, SAJ and Langan, S (2019). Clinical Code List - Terminal Disease - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001329.

Schmidt, SAJ and Langan, S (2019). Therapy Code List - Anti-Diabetes Drugs - BNF Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001231.

Schmidt, SAJ and Langan, S (2019). Therapy Code List - Anti-Diabetes Drugs - BNF Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001320.

Schmidt, SAJ and Langan, S (2019). Therapy Code List - Nicotine Replacement Therapy - BNF Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001256.

Schmidt, SAJ and Langan, S (2019). Therapy Code List - Nicotine Replacement Therapy - BNF Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001326.

Schonmann, Y, Mansfield, KE, Smeeth, L, Langan, S and Nitsch, D (2019). Clinical Codelist - Atopic Eczema Diagnoses - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001211.

Schonmann, Y, Mansfield, KE, Smeeth, L, Langan, S and Nitsch, D (2019). Clinical Codelist - Atopic Eczema Therapies - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001212.

Schonmann, Y, Mansfield, KE, Smeeth, L, Langan, S and Nitsch, D (2019). Clinical Codelist - Chronic Heart Failure - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001209.

Schonmann, Y, Mansfield, KE, Smeeth, L, Langan, S and Nitsch, D (2019). Clinical Codelist - Creatinine - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001206.

Schonmann, Y, Mansfield, KE, Smeeth, L, Langan, S and Nitsch, D (2019). Clinical Codelist - Diabetes - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001210.

Schonmann, Y, Mansfield, KE, Smeeth, L, Langan, S and Nitsch, D (2019). Clinical Codelist - Harmful Alchohol - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001207.

Schonmann, Y, Mansfield, KE, Smeeth, L, Langan, S and Nitsch, D (2019). Clinical Codelist - Hidradenitis Suppurativa - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001213.

Schonmann, Y, Mansfield, KE, Smeeth, L, Langan, S and Nitsch, D (2019). Clinical Codelist - Hypertension - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001216.

Schonmann, Y, Mansfield, KE, Smeeth, L, Langan, S and Nitsch, D (2019). Clinical Codelist - Ischemic Heart Disease - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001217.

Schonmann, Y, Mansfield, KE, Smeeth, L, Langan, S and Nitsch, D (2019). Clinical Codelist - Peripheral Artery Disease - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001218.

Schonmann, Y, Mansfield, KE, Smeeth, L, Langan, S and Nitsch, D (2019). Clinical Codelist - Psoriasis - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001219.

Schonmann, Y, Mansfield, KE, Smeeth, L, Langan, S and Nitsch, D (2019). Clinical Codelist - Renal Replacement Therapy and Dialysis - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001223.

Schonmann, Y, Mansfield, KE, Smeeth, L, Langan, S and Nitsch, D (2019). Clinical Codelist - Rosacea - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001220.

Schonmann, Y, Mansfield, KE, Smeeth, L, Langan, S and Nitsch, D (2019). Clinical Codelist - Smoking - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001222.

Schwabl, P, Imamura, H, Van den Broeck, F, Costales, JA, Maiguashca-Sánchez, J, Miles, M, Andersson, B, Grijalva, MJ and Llewellyn, MS (2019). Meiotic sex in Chagas disease parasite Trypanosoma cruzi. [Data Collection]. Nature Communications. https://doi.org/10.1038/s41467-019-11771-z

Sear, R, Sheppard, P and Coall, DA (2019). Supplementary Table 1 from Cross-cultural evidence does not support universal acceleration of puberty in father-absent households. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.7756952.v1

Shaw, HA, Preston, MD, Vendrik, KE, Cairns, MD, Browne, HP, Stabler, R, Crobach, MJ, Corver, J, Pituch, H, Ingebretsen, A, Primohammed, M, Faulds-pain, A, Valiente, E, Lawley, TD, Fairweather, NF and Wren, B (2019). “The recent emergence of a highly related virulent Clostridium difficile clade with unique characteristics”. [Data Collection]. Clinical Microbiology and Infection. https://doi.org/10.1016/j.cmi.2019.09.004

Shi, Y, Thompson, J, Walker, AS, Paton, N and Cheung, YB (2019). Additional file 1: of Mapping the medical outcomes study HIV health survey (MOS-HIV) to the EuroQoL 5 Dimension (EQ-5D-3 L) utility index. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.8113466.v1

Sikazwe, I, Eshun-Wilson, I, Sikombe, K, Czaicki, N, Somwe, P, Mody,, A, Simbeza, S, Glidden, DV, Chizema, E, Mulenga, LB, Padian, N, Duncombe, CJ, Bolton-Moore, C, Beres, LK, Holmes, CB and Geng, E (2019). Retention and viral suppression in a cohort of HIV patients on antiretroviral therapy in Zambia: Regionally representative estimates using a multistage-sampling-based approach. [Data Collection]. PLOS Medicine. https://doi.org/10.1371/journal.pmed.1002811

Sim, AYL, Huber, RG, Lim, XN, Ng, WC, Chawla, T, Aw, J, Lim, SY, Shen, Y, Boon, K, Choy, MM, Wilm, A, de Sessions, PF, Hibberd, M, Nagarajan, N, Ooi, EE, Bond, PJ, Sessions, OM and Wan, Y (2019). Genome organization of dengue and Zika viruses. [Data Collection]. NCBI Gene Expression Omnibus. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE106483

Singhania, A, Graham, CM, Gabryšová, L, Moreira-Teixeira, L, Stavropoulos, E, Pitt, JM, Chakravarty, P, Warnatsch, A, Branchett, WJ, Conejero, L, Lin, J, Davidson, S, Wilson, MS, Bancroft, G, Langhorne, J, Frickel, E, Sesay, AK, Priestnall, SL, Herbert, E, Ioannou, M, Wang, Q, Humphreys, IR, Dodd, J, Openshaw, PJ, Mayer-Barber, KD, Jankovic, D, Sher, A, Lloyd, CM, Baldwin, N, Chaussabel, D, Papayannopoulos, V, Wack, A and Banchereau, JF (2019). Transcriptional profiling unveils type I and II interferon networks in blood and tissues across diseases. [Data Collection]. Nature Communications. https://doi.org/10.1038/s41467-019-10601-6

Smith, CM, Allen, DJ, Nawaz, S, Kozlakidis, Z, Nastouli, E, Hayward, A and Ward, KN (2019). Demonstration data for: "An interactive data visualisation application to investigate nosocomial transmission of infections". [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.8241530.v2

Sotillo, J, Pearson, MS, Becker, L, Mekonnen, GG, Amoah, AS, Dam, Gv, Corstjens, PL, Murray, J, Mduluza, T, Mutapi, F and Loukas, A (2019). In-depth proteomic characterization of Schistosoma haematobium: Towards the development of new tools for elimination. [Data Collection]. PLoS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0007362

Spicer, N and Wickremasinghe, D (2019). Protocol for the IDEAS qualitative study of scalability and sustainability of maternal and newborn health innovations in northeast Nigeria, Ethiopia and Uttar Pradesh, India. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001612.

Stockwin, J, Thompson, R, Cori, A, Jombart, T, Kamvar, ZN and FitzJohn, R (2019). jstockwin/EpiEstimApp: v1.0.0. [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.3275999

Strongman, H (2019). Covariate Code List - ACE inhibitors. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001126.

Strongman, H (2019). Covariate Code List - ARBs. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001127.

Strongman, H (2019). Covariate Code List - Beta blockers. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001125.

Strongman, H (2019). Covariate Code List - Coeliac disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001141.

Strongman, H (2019). Covariate Code List - Hormone Replacement Therapy. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001129.

Strongman, H (2019). Covariate Code List - Hysterectomy. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001130.

Strongman, H (2019). Covariate Code List - Immunosuppressive drugs. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001139.

Strongman, H (2019). Covariate Code List - Migraine. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001135.

Strongman, H (2019). Covariate Code List - NSAIDs. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001128.

Strongman, H (2019). Covariate Code List - Obstructive sleep apnoea. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001140.

Strongman, H (2019). Covariate Code List - Sclerosis. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001133.

Strongman, H (2019). Covariate Code List - Statins. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001124.

Strongman, H and Iwagami, M (2019). Covariate Code List - Severe mental illness. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001142.

T

Tait, DR, Hatherill, M, Van Der Meeren, O, Ginsberg, AM, Van Brakel, E, Salaun, B, Scriba, TJ, Akite, EJ, Ayles, HM, Bollaerts, A, Demoitié, M, Diacon, A, Evans, TG, Gillard, P, Hellström, E, Innes, JC, Lempicki, M, Malahleha, M, Martinson, N, Mesia Vela, D, Muyoyeta, M, Nduba, V, Pascal, TG, Tameris, M, Thienemann, F, Wilkinson, RJ and Roman, F (2019). Final Analysis of a Trial of M72/AS01E Vaccine to Prevent Tuberculosis. [Data Collection]. Clinical Study Data Request. https://www.clinicalstudydatarequest.com/

Tenforde, MW, Muthoga, C, Callaghan, A, Ponetshego, P, Ngidi, J, Mine, M, Jordan, A, Chiller, T, Larson, BA and Jarvis, JN (2019). Cost-effectiveness of reflex laboratory-based cryptococcal antigen screening for the prevention and treatment of cryptococcal meningitis in Botswana. [Data Collection]. Open Science Framework. https://doi.org/10.17605/OSF.IO/URXAG

Torres, AG, Vidal, RM, Muhsen, K, Tennant, SM, Svennerholm, A, Sow, SO, Sur, D, Zaidi, AKM, Faruque, ASG, Saha, D, Adegbola, R, Hossain, MJ, Alonso, PL, Breiman, RF, Bassat, Q, Tamboura, B, Sanogo, D, Onwuchekwa, U, Manna, B, Ramamurthy, T, Kanungo, S, Ahmed, S, Qureshi, S, Quadri, F, Hossain, A, Das, SK, Antonio, M, Mandomando, I, Nhampossa, T, Acácio, S, Omore, R, Ochieng, JB, Oundo, JO, Mintz, ED, O’Reilly, CE, Berkeley, LY, Livio, S, Panchalingam, S, Nasrin, D, Farag, TH, Wu, Y, Sommerfelt, H, Robins-Browne, RM, Del Canto, F, Hazen, TH, Rasko, DA, Kotloff, KL, Nataro, JP and Levine, MM (2019). Colonization factors among enterotoxigenic Escherichia coli isolates from children with moderate-to-severe diarrhea and from matched controls in the Global Enteric Multicenter Study (GEMS). [Data Collection]. PLoS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0007037

Turtle, L, Brindle, H, Schluter, WW, Faragher, B, Rayamajhi, A, Bohara, R, Gurung, S, Shakya, G, Yoksan, S, Dixit, S, Rajbhandari, R, Paudel, B, Adhikari, S, Solomon, T and Griffiths, MJ (2019). Low population Japanese encephalitis virus (JEV) seroprevalence in Udayapur district, Nepal, three years after a JE vaccination programme: A case for further catch up campaigns? [Data Collection]. PLoS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0007269

V

Vinh Pham, T, Van Nguyen, H, Rosas Aguirre, A, Van Nguyen, V, Cleves, MA, Nguyen, XX, Thanh Nguyen, T, Thanh Tran, D, Xuan Le, H, Hens, N, Rosanas-urgell, A, D’Alessandro, U, Speybroeck, N and Erhart, A (2019). Plasmodium vivax morbidity after radical cure: A cohort study in Central Vietnam. [Data Collection]. PLoS Medicine. https://doi.org/10.1371/journal.pmed.1002784

W

Wailan​, AM, Coll, F, Heinz, E, Tonkin-Hill, G, Corander, J, Feasey, NA and Thomson, NR (2019). rPinecone: Define sub-lineages of a clonal expansion via a phylogenetic tree. [Data Collection]. Microbial Genomics. https://doi.org/10.1099/mgen.0.000264

Walker, D (2019). Charity Open Access Fund (COAF) expenditure report 2018-19. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.10303616

Walker, D (2019). LSHTM RCUK Open Access Block Grant Compliance Report 2018-19. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.6084/m9.figshare.8089397

Walker, D (2019). Libraries and the REF. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001457.

Wang, X, Bourne, A, Liu, P, Sun, J, Cai, T, Mburu, G, Cassolato, M, Wang, B and Zhou, W (2019). Data from: Understanding willingness to use oral pre-exposure prophylaxis for HIV prevention among men who have sex with men in China. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.806382j

Ward, Z, Yeh, J, Bhakta, N, Frazier, AL, Girardi, F and Atun, R (2019). Simulation Results: Global Childhood Cancer Survival. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/PWPA9E

Watson, J (2019). Determinants of child handwashing in a IDP camp in Northern Iraq - Qualitative dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001490.

Watts, S and Holt, KE (2019). hicap validation assembly set. [Data Collection]. Figshare. https://doi.org/10.26180/5c352c5110712

Webb, E and Mpairwe, H (2019). SONA project - Asthma management data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001358.

Webb, E and Mpairwe, H (2019). SONA project - Asthma risk factors data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001369.

Webster, J, Landegger, J, Bruce, J, Malunda, D, Chantler, T, Kumakech, E, Schmucker, L, Kiapi, L, Kozuki, N, Olorunsaiye, C and Byrne, E (2019). Impacts of IRC’s Fifth Child community engagement strategy to increase immunisation in northern Uganda. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/6XGSOE

Weiss, H, Danquah, L, Hasham, N and MacFarlane, M (2019). Ebola Contact Tracing Study data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001069.

White, LV, Lee, N, Marin, FP, Saludar, NR, Edwards, T and Cox, S (2019). Performance of alternative measures to Body Mass Index in the assessment of moderate and severe under-nutrition among acutely unwell patients hospitalized in a TB ward in the Philippines: A cross-sectional study. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.8003120.v2

White, S and Zangana, A (2019). Barrier Analysis survey data on handwashing with soap among Internally Displaced People in two camps in Iraq. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.8152751.v1

Wick, RR, Judd, LM and Holt, KE (2019). Additional file 2 of: Performance of neural network basecalling tools for Oxford Nanopore sequencing. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.8319506.v1

Wing, K and Strongman, H (2019). Covariate Code List - Chronic liver disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001137.

Winter, SC, Dreibelbis, R, Ningoma Dzombo,, M and Barchi, F (2019). A mixed-methods study of women’s sanitation utilization in informal settlements in Kenya. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0214114

Wong, A, Mansfield, KE and Langan, S (2019). Clinical Code List - Atopic Eczema - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001250.

Wong, A, Mansfield, KE and Langan, S (2019). Clinical Code List - Phototherapy for Atopic Eczema - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001252.

Wong, A, Mansfield, KE and Langan, S (2019). Therapy Code List - Treatment for Atopic Eczema - BNF Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001254.

Wong, A, Schmidt, SAJ and Langan, S (2019). Clinical Code List - Psoriasis - Read Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001255.

Wyres, KL, Wick, RR, Judd, LM, Froumine, R, Tokolyi, A, Gorrie, CL, Lam, MM, Duchêne, S, Jenney, A and Holt, K (2019). Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae. [Data Collection]. PLoS Genetics. https://doi.org/10.1371/journal.pgen.1008114

Y

Yang, JC, Roman-Urrestarazu, A, Mckee, M and Brayne, C (2019). Demographic, socioeconomic, and health correlates of unmet need for mental health treatment in the United States, 2002–16: evidence from the national surveys on drug use and health. [Data Collection]. International Journal for Equity in Health. https://doi.org/10.1186/s12939-019-1026-y

Z

Zhang, J, Klepac, P, Read, J, Rosello, A, Wang, X, Lai, S, Li, M, Song, Y, Wei, Q, Jiang, H, Yang, J, Lynn, H, Flasche, S, Jit, M and Yu, H (2019). Social contact data for China mainland. [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.3516113