Project

Avan, B and Berhanu, D (2020). IDEAS Community Base Newborn Care Evaluation, Ethiopia 2013-2017. [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001979.

TUMIKA Project (2019). TUMIKIA Project Resources. [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Schellenberg, J (2016). IDEAS - Informed Decisions for Actions in Maternal and Newborn Health: Phase 1. [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.108.

Data Collection

Heinz, E, Pearse, O, Zuza, A, Bilima, S, Msefula, C, Musicha, P, Siyabu, P, Tewesa, E, Graf, FE, Lester, R, Lissauer, S, Cornick, J, Lewis, JM, Kawaza, K, Thomson, NR and Feasey, NA (2024). Additional file 2 of Longitudinal analysis within one hospital in sub-Saharan Africa over 20 years reveals repeated replacements of dominant clones of Klebsiella pneumoniae and stresses the importance to include temporal patterns for vaccine design considerations. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.26716636.v1

Abdelmagid, N and Light, P (2024). Survey data on decision-making for childhood vaccination in crisis settings. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00004292.

Mezmur, H, Tefera, M, Jemal, M, Kahsay, B and Assefa, N (2024). Household fuel use and adverse pregnancy outcomes. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.26406418.v1

Stevens, O and Anderson, R (2024). Population size, HIV prevalence, and antiretroviral therapy coverage among key populations in sub-Saharan Africa: collation and synthesis of survey data 2010-2023. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10838437

Bousema, T, Collins, K, Ouedraogo, A, Guelbeogo, WM, Soulama, I, Ouattara, M, Sobie, S, Ouedraogo, N, Coulibaly, A, Nombre, A, Lanke, K, Ramjith, J, Awandu, S, Serme, S, Henry, N, Stone, WJR, Ouedraogo, I, Holden, T, Sirima, S, Bradley, J, Soremekun, S, Selvaraj, P, Gerardin, J, Drakeley, C and Tiono, A (2024). The impact of weekly fever-screening and treatment and monthly RDT testing and treatment on the infectious reservoir of malaria in Burkina Faso: results from a cluster-randomised trial. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.fxpnvx117

Institute for Health Metrics and Evaluation (IHME) and London School of Hygiene and Tropical Medicine (2024). Measles Seroprevalence Systematic Review and Bias Assessment 1962-2019. [Data Collection]. Global Health Data Exchange (GHDx). https://ghdx.healthdata.org/record/ihme-data/measles-serosurvey-bias-systematic-review

Fivian, E, Parida, M, Mohanty, S, Harris-fry, H, Padhan, S and Kadiyala, S (2024). Mobile Interventions for Upscaling Participatory Action and Videos for Agriculture and Nutrition (m-UPAVAN): Qualitative Interview Data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003847.

Fivian, E, Harris-Fry, H, Pradhan, R, Mohanty, S, Padhan, S, Rath, S, James, P, Koniz-Booher, P, Nair, N, Haghparast-Bidgoli, H, Kishor Mishra, N, Rath, S, Beaumont, E, Danton, H, Krishnan, S, Parida, M, Kumar, A, Upadhyay, A, Tripathy, P, Skordis, J, Sturgess, J, Elbourne, D, Prost, A, Allen, E and Kadiyala, S (2024). Upscaling Participatory Action and Videos for Agriculture and Nutrition (UPAVAN) study data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003642.

Oswald, W and Okiya, S (2024). TUMIKIA Project Household Questionnaire & Stool Sample Collection Form. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003812.

Muriithi, FG, Banke-Thomas, A, Forbes, G, Gakuo, RW, Thomas, E, Gallos, ID, Devall, A, Coomarasamy, A and Lorencatto, F (2024). ROBVIS generic dataset. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pgph.0002950.s003

Muriithi, FG, Banke-Thomas, A, Forbes, G, Gakuo, RW, Thomas, E, Gallos, ID, Devall, A, Coomarasamy, A and Lorencatto, F (2024). A systematic review of behaviour change interventions to improve maternal health outcomes in sub-Saharan Africa: Framework analysis and coding. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pgph.0002950.s002

Muriithi, FG, Banke-Thomas, A, Forbes, G, Gakuo, RW, Thomas, E, Gallos, ID, Devall, A, Coomarasamy, A and Lorencatto, F (2024). A systematic review of behaviour change interventions to improve maternal health outcomes in sub-Saharan Africa: Included studies and extracted data. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pgph.0002950.s001

Muriithi, FG, Banke-Thomas, A, Forbes, G, Gakuo, RW, Thomas, E, Gallos, ID, Devall, A, Coomarasamy, A and Lorencatto, F (2024). A systematic review of behaviour change interventions to improve maternal health outcomes in sub-Saharan Africa: Quality assessment. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pgph.0002950.s005

Emery, JC, Dodd, PJ, Banu, S, Frascella, B, Garden, FL, Horton, KC, Hossain, S, Law, I, van Leth, F, Marks, GB, Nguyen, HB, Nguyen, HV, Onozaki, I, Quelapio, MID, Richards, AS, Shaikh, N, Tiemersma, EW, White, RG, Zaman, K, Cobelens, F and Houben, RM (2023). epidemery/subclinical_transmission. [Data Collection]. GitHub. https://github.com/epidemery/subclinical_transmission

Fivian, E, Kadiyala, S, Harris-fry, H, Allen, E, Parida, M, Satyanarayan, M, Satyaranjan, B, Shibanath, P and Ronali, P (2023). Data for: Mobile Interventions for Upscaling Participatory Action and Videos for Agriculture and Nutrition (m-UPAVAN). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003635.

Watson, J (2023). Data set from a proof-of-concept trial of an intervention designed to improve food hygiene behaviours among caregivers of young children living in low-income areas of Nairobi, Kenya. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003671.

Garcia, KKS, Soremekun, S, Bottomley, C, Abrahão, AA, de Miranda, CB, Drakeley, C, Ramalho, WM and Siqueira, AM (2023). Additional file 2 of Assessing the impact of the “malaria supporters project” intervention to malaria control in the Brazilian Amazon: an interrupted time-series analysis. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.24151173.v1

Garcia, KKS, Soremekun, S, Bottomley, C, Abrahão, AA, de Miranda, CB, Drakeley, C, Ramalho, WM and Siqueira, AM (2023). Additional file 3 of Assessing the impact of the “malaria supporters project” intervention to malaria control in the Brazilian Amazon: an interrupted time-series analysis. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.24151176.v1

Tang, FF, Kosana, P, Jit, M, Terris-Prestholt, F, Wu, D, Ong, JJ and Tucker, JD (2023). PIF influenza costing analysis and probabilistic sensitivity analysis. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001590.s004

Tang, FF, Kosana, P, Jit, M, Terris-Prestholt, F, Wu, D, Ong, JJ and Tucker, JD (2023). PIF influenza participant questionnaire responses and donation amounts dataset. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001590.s003

Hollingworth, SA, Leaupepe, G, Nonvignon, J, Fenny, AP, Odame, EA and Ruiz, F (2023). Additional file 1 of Economic evaluations of non-communicable diseases conducted in Sub-Saharan Africa: a critical review of data sources. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.24046073.v1

Krug, C, Neuman, M, Rosen, JE, Weinberger, M, Wallach, S, Lagaay, M, Punton, M, Prakash, A, Nsanya, MK, Ayieko, P, Kapiga, S, Ajayi, YP, Crawford, EE, Tenaw, E, Mussa, M, Shrestha, SK, Bottomley, C, Hargreaves, J and Doyle, AM (2023). Evaluating the adolescents 360 approach in Ogun (Nigeria), Nasarawa (Nigeria), Oromia (Ethiopia) and Mwanza (Tanzania) – Study data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003599.

Walton, Z (2023). Data for: "Shifting a food system conference online mitigates structural barriers to equitable participation, but hinders meaningful interpersonal connections". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003485.

WOMAN-PharmacoTXA trial (2023). PharmacoTXA: Pharmacokinetics of Tranexamic Acid after oral, intramuscular or intravenous administration: a prospective, randomised, cross-over trial in healthy volunteers. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003555.

Simons, D (2023). DidDrog11/arenavirus_hantavirus_app. [Data Collection]. Github. https://github.com/DidDrog11/arenavirus_hantavirus_app

Nightingale, E (2023). esnightingale/vl-collection-methods-xm. [Data Collection]. GitHub. https://github.com/esnightingale/vl-collection-methods-xm

Wambiya, EOA, Gourlay, AJ, Mulwa, S, Magut, F, Mthiyane, N, Orindi, B, Chimbindi, N, Kwaro, D, Shahmanesh, M, Floyd, S, Birdthistle, I and Ziraba, A (2023). Association between DREAMS and experiences of violence among AGYW followed up in 2019 by site and age group using conventional logistic regression. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001818.s005

Wambiya, EOA, Gourlay, AJ, Mulwa, S, Magut, F, Mthiyane, N, Orindi, B, Chimbindi, N, Kwaro, D, Shahmanesh, M, Floyd, S, Birdthistle, I and Ziraba, A (2023). Association between invitation to DREAMS and any experience of violence among AGYW in Gem using conventional logistic regression. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001818.s007

Wambiya, EOA, Gourlay, AJ, Mulwa, S, Magut, F, Mthiyane, N, Orindi, B, Chimbindi, N, Kwaro, D, Shahmanesh, M, Floyd, S, Birdthistle, I and Ziraba, A (2023). Association between invitation to DREAMS and any experience of violence among AGYW in Nairobi using conventional logistic regression. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001818.s006

Wambiya, EOA, Gourlay, AJ, Mulwa, S, Magut, F, Mthiyane, N, Orindi, B, Chimbindi, N, Kwaro, D, Shahmanesh, M, Floyd, S, Birdthistle, I and Ziraba, A (2023). Association between invitation to DREAMS and any experience of violence among AGYW in uMkhanyakude using conventional logistic regression. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001818.s008

Wambiya, EOA, Gourlay, AJ, Mulwa, S, Magut, F, Mthiyane, N, Orindi, B, Chimbindi, N, Kwaro, D, Shahmanesh, M, Floyd, S, Birdthistle, I and Ziraba, A (2023). Association between invitation to DREAMS and emotional violence among AGYW in Gem using conventional logistic regression, 13–22 year-olds. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001818.s013

Wambiya, EOA, Gourlay, AJ, Mulwa, S, Magut, F, Mthiyane, N, Orindi, B, Chimbindi, N, Kwaro, D, Shahmanesh, M, Floyd, S, Birdthistle, I and Ziraba, A (2023). Association between invitation to DREAMS and emotional violence among AGYW in Nairobi using conventional logistic regression, 13–22 year-olds. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001818.s012

Wambiya, EOA, Gourlay, AJ, Mulwa, S, Magut, F, Mthiyane, N, Orindi, B, Chimbindi, N, Kwaro, D, Shahmanesh, M, Floyd, S, Birdthistle, I and Ziraba, A (2023). Association between invitation to DREAMS and emotional violence among AGYW in uMkhanyakude using conventional logistic regression, 13–22 year-olds. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001818.s014

Wambiya, EOA, Gourlay, AJ, Mulwa, S, Magut, F, Mthiyane, N, Orindi, B, Chimbindi, N, Kwaro, D, Shahmanesh, M, Floyd, S, Birdthistle, I and Ziraba, A (2023). Association between invitation to DREAMS and physical violence among AGYW in Gem using conventional logistic regression, 13–22 year-olds. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001818.s010

Wambiya, EOA, Gourlay, AJ, Mulwa, S, Magut, F, Mthiyane, N, Orindi, B, Chimbindi, N, Kwaro, D, Shahmanesh, M, Floyd, S, Birdthistle, I and Ziraba, A (2023). Association between invitation to DREAMS and physical violence among AGYW in Nairobi using conventional logistic regression, 13–22 year-olds. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001818.s009

Wambiya, EOA, Gourlay, A, Mulwa, S, Magut, F, Mthiyane, N, Orindi, B, Chimbindi, N, Kwaro, D, Shahmanesh, M, Floyd, S, Birdthistle, I and Ziraba, A (2023). Association between invitation to DREAMS and physical violence among AGYW in uMkhanyakude using conventional logistic regression, 13–22 year-olds. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001818.s011

Wambiya, EOA, Gourlay, AJ, Mulwa, S, Magut, F, Mthiyane, N, Orindi, B, Chimbindi, N, Kwaro, D, Shahmanesh, M, Floyd, S, Birdthistle, I and Ziraba, A (2023). Association between invitation to DREAMS and sexual violence among AGYW in Gem using conventional logistic regression, 13–22 year-olds. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001818.s016

Wambiya, EOA, Gourlay, AJ, Mulwa, S, Magut, F, Mthiyane, N, Orindi, B, Chimbindi, N, Kwaro, D, Shahmanesh, M, Floyd, S, Birdthistle, I and Ziraba, A (2023). Association between invitation to DREAMS and sexual violence among AGYW in Nairobi using conventional logistic regression, 13–22 year-olds. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001818.s015

Wambiya, EOA, Gourlay, AJ, Mulwa, S, Magut, F, Mthiyane, N, Orindi, B, Chimbindi, N, Kwaro, D, Shahmanesh, M, Floyd, S, Birdthistle, I and Ziraba, A (2023). Association between invitation to DREAMS and sexual violence among AGYW in uMkhanyakude using conventional logistic regression, 13–22 year-olds. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001818.s017

Wambiya, EOA, Gourlay, AJ, Mulwa, S, Magut, F, Mthiyane, N, Orindi, B, Chimbindi, N, Kwaro, D, Shahmanesh, M, Floyd, S, Birdthistle, I and Ziraba, A (2023). Characteristics of DREAMS beneficiaries and non-beneficiaries at time of cohort enrolment by invitation to DREAMS in Nairobi, Gem and uMkhanyakude. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001818.s004

Wambiya, EOA, Gourlay, AJ, Mulwa, S, Magut, F, Mthiyane, N, Orindi, B, Chimbindi, N, Kwaro, D, Shahmanesh, M, Floyd, S, Birdthistle, I and Ziraba, A (2023). Proportions of AGYW retained in the study vs lost to follow up by 2019, by AGYW characteristics in Gem. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001818.s002

Wambiya, EOA, Gourlay, AJ, Mulwa, S, Magut, F, Mthiyane, N, Orindi, B, Chimbindi, N, Kwaro, D, Shahmanesh, M, Floyd, S, Birdthistle, I and Ziraba, A (2023). Proportions of AGYW retained in the study vs lost to follow up by 2019, by AGYW characteristics in Nairobi. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001818.s001

Wambiya, EOA, Gourlay, A, Mulwa, S, Magut, F, Mthiyane, N, Orindi, B, Chimbindi, N, Kwaro, D, Shahmanesh, M, Floyd, S, Birdthistle, I and Ziraba, A (2023). Proportions of AGYW retained in the study vs lost to follow up by 2019, by AGYW characteristics in uMkhanyakude. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001818.s003

Wambiya, EOA, Gourlay, AJ, Mulwa, S, Magut, F, Mthiyane, N, Orindi, B, Chimbindi, N, Kwaro, D, Shahmanesh, M, Floyd, S, Birdthistle, I and Ziraba, A (2023). Sensitivity analyses on the effect of DREAMS on experiences of violence among AGYW. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001818.s018

Joy, E, Sturgess, J and Allen, E (2023). AHHA Malawi Trial Dataset - Version 3. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003400.

Pry, J, Simbeza, S, Geng, E, Mutale, J, Sikombe, K, Jere, L, Bukankala, C and Beres, L (2023). Depression among healthcare workers in Lusaka, Zambia during the COVID-19 pandemic. [Data Collection]. Dryad. https://doi.org/10.25338/B8S646

Foster-Nyarko, E, Holt, KE, Cottingham, H, Wick, R, Judd, LM, Lam, M, Wyres, KL, Stanton, T, Tsang, KK, David, S, Bridel, S, Palma, F, Aanensen, DM and Brisse, S (2023). Nanopore-only assemblies for genomic surveillance of the global priority drug-resistant pathogen, Klebsiella pneumoniae. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.19745608.v2

Mweemba, A, Kelly, P, Heimburger, DC, Mutale, W, Nzala, S, Wester, WC, Banda, J, Mulenga, LB, Siwingwa, M and Todd, J (2023). Effect of anti-retroviral regimen on proximal tubular function in Zambian adolescents and young adults living with HIV. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.22044047.v1

Aiken, A and Rehman, AM (2023). MBIRA - Mortality from Bacterial Infections Resistant to Antibiotics study - underlying data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003168.

Soremekun, S (2022). inSCALE Uganda Impact Evaluation Dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002559.

Jarju, S, Senghore, E, Brotherton, H, Saidykhan, A, Jallow, S, Krubally, E, Sinjanka, E, Ndene, MN, Bajo, F, Sanyang, MM, Saidy, B, Bah, A, Mohammed, NI, Forrest, K, Clarke, E, Dalessandro, U, Sesay, AK, Usuf, E, Cerami, C, Roca, A, Kampmann, B and De silva, T (2022). Circulation of respiratory viruses during the COVID-19 pandemic in the Gambia. [Data Collection]. Open Science Framework. https://doi.org/10.17605/OSF.IO/TSF78

Hawkey, J, Wyres, KL, Judd, LM, Harshegyi, T, Blakeway, L, Wick, RR, Jenney, AWJ and Holt, KE (2022). Additional file 1 of ESBL plasmids in Klebsiella pneumoniae: diversity, transmission and contribution to infection burden in the hospital setting. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.20579653.v1

Hawkey, J, Wyres, KL, Judd, LM, Harshegyi, T, Blakeway, L, Wick, RR, Jenney, AWJ and Holt, KE (2022). Additional file 3 of ESBL plasmids in Klebsiella pneumoniae: diversity, transmission and contribution to infection burden in the hospital setting. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.20579659.v1

Hawkey, J, Wyres, KL, Judd, LM, Harshegyi, T, Blakeway, L, Wick, RR, Jenney, AWJ and Holt, KE (2022). Additional file 4 of ESBL plasmids in Klebsiella pneumoniae: diversity, transmission and contribution to infection burden in the hospital setting. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.20579662.v1

Mulwa, S, Chimoyi, L, Agbla, S, Osindo, J, Wambiya, EO, Gourlay, A, Birdthistle, I, Ziraba, A and Floyd, S (2022). Summary characteristics of AGYW by schooling status at baseline and by invitation to DREAMS. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0255165.s010

Quaife, M (2022). Cross-sectional survey of health worker motivation in Ethiopia – Collection tools for qualitative and quantitative research. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001565.

Kumssa, DB, Mossa, A, Amede, T, Ander, E, Bailey, E, Botoman, L, Chagumaira, C, Chimungu, J, Davis, K, Gameda, S, Haefele, S, Hailu, K, Joy, EJM, Lark, R, Ligowe, I, Muleya, P, McGrath, S, Milne, A, Munthali, M, Towett, E, Walsh, M, Wilson, L, Young, S, Nalivata, P, Gashu, D, Broadley, M and Haji, IR (2022). Cereal grain mineral micronutrient and soil chemistry data from GeoNutrition surveys in Ethiopia and Malawi. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.15911973.v1

Barreaux, P, Koella, JC, N'guessan, R and Thomas, MB (2022). Use of novel lab assays to examine the effect of pyrethroid-treated bed nets on blood-feeding success and longevity of highly insecticide-resistant Anopheles gambiae s.l. mosquitoes. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.5919335.v1

Dyson, ZA, Malau, E, Horwood, PF, Ford, R, Siba, V, Yoannes, M, Pomat, W, Passey, M, Judd, LM, Ingle, DJ, Williamson, DA, Dougan, G, Greenhill, AR and Holt, KE (2022). Accession numbers and data for S. Typhi sequences used in this study. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0010306.s005

Dyson, ZA, Malau, E, Horwood, PF, Ford, R, Siba, V, Yoannes, M, Pomat, W, Passey, M, Judd, LM, Ingle, DJ, Williamson, DA, Dougan, G, Greenhill, AR and Holt, KE (2022). Excluded repeat and phage regions in PNG MDUST348 2.1.7.2 completed reference sequence. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0010306.s006

Dyson, ZA, Malau, E, Horwood, PF, Ford, R, Siba, V, Yoannes, M, Pomat, W, Passey, M, Judd, LM, Ingle, DJ, Williamson, DA, Dougan, G, Greenhill, AR and Holt, KE (2022). Outgroups used for phylogenetic tree rooting. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0010306.s007

Martin, JL, Messenger, LA, Mosha, FW, Lukole, E, Mosha, JF, Kulkarni, M, Churcher, TS, Sherrard-Smith, E, Manjurano, A, Protopopoff, N and Rowland, M (2022). Supporting files for: "Durability of three types of dual active ingredient long-lasting insecticidal net compared to a pyrethroid-only LLIN in Tanzania: methodology for a prospective cohort study nested in a cluster randomized controlled trial". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002833.

Smith, A, Wall, RJ, Patterson, S, Rowan, T, Rico Vidal, E, Stojanovski, L, Huggett, M, Hampton, SE, Thomas, MG, Corpas Lopez, V, Gillingwater, K, Duke, J, Napier, G, Peter, R, Vitouley, HS, Harrison, JR, Milne, R, Jeacock, L, Baker, N, Davis, SH, Simeons, F, Riley, J, Horn, D, Brun, R, Zuccotto, F, Witty, MJ, Wyllie, S, Read, KD and Gilbert, IH (2022). Repositioning of a Diaminothiazole Series Confirmed to Target the Cyclin-Dependent Kinase CRK12 for Use in the Treatment of African Animal Trypanosomiasis. [Data Collection]. ACS Publications. https://doi.org/10.1021/acs.jmedchem.1c02104.s003

Wick, RR and Holt, KE (2022). Assembly and polishing details for the real-read tests. [Data Collection]. PLOS Computational Biology. https://doi.org/10.1371/journal.pcbi.1009802.s020

Wick, RR and Holt, KE (2022). Confusion matrices for the simulated-read tests. [Data Collection]. PLOS Computational Biology. https://doi.org/10.1371/journal.pcbi.1009802.s017

Wick, RR and Holt, KE (2022). Genome details for the simulated-read tests. [Data Collection]. PLOS Computational Biology. https://doi.org/10.1371/journal.pcbi.1009802.s015

Wick, RR and Holt, KE (2022). Predictors of assembly quality. [Data Collection]. PLOS Computational Biology. https://doi.org/10.1371/journal.pcbi.1009802.s018

Wick, RR and Holt, KE (2022). Raw results for the real-read tests. [Data Collection]. PLOS Computational Biology. https://doi.org/10.1371/journal.pcbi.1009802.s019

Wick, RR and Holt, KE (2022). Raw results for the simulated-read tests. [Data Collection]. PLOS Computational Biology. https://doi.org/10.1371/journal.pcbi.1009802.s016

Muleya, M and Salter, A (2021). Ileal amino acid digestibility and DIAAS values of world foods. [Data Collection]. Mendeley Data. https://doi.org/10.17632/gz3cx7d5f4.1

Caruso, B, Sclar, GD, Routray, P, Nagel, CL, Majorin, F, Sola, S, Koehne, W and Clasen, TF (2021). Low-Cost Behaviour Change Interventions to Improve Latrine Use and Safe Child Faeces Disposal in Rural Odisha, India. [Data Collection]. OSF. https://osf.io/bewpz/

Mowbray, CE, Braillard, S, Glossop, PA, Whitlock, GA, Jacobs, RT, Speake, J, Pandi, B, Nare, B, Maes, L, Yardley, V, Freund, Y, Wall, RJ, Carvalho, S, Bello, D, Van den Kerkhof, M, Caljon, G, Gilbert, IH, Corpas-Lopez, V, Lukac, I, Patterson, S, Zuccotto, F and Wyllie, S (2021). DNDI-6148: A Novel Benzoxaborole Preclinical Candidate for the Treatment of Visceral Leishmaniasis. [Data Collection]. ACS Publications, Washington, DC, USA. https://doi.org/10.1021/acs.jmedchem.1c01437.s004

Fielding, K (2021). Data set for describing resistance and identifying risk factors for resistance to Mycobacterium tuberculosis, among highly TB exposed gold miners in South Africa. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002424.

Fielding, K (2021). Adjunctive host-directed therapies for pulmonary tuberculosis: data from a prospective, open-label, phase 2, randomised controlled trial. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002277.

Ross, I (2021). Data for: "Sanitation-related Quality of Life (SanQoL) in Maputo, Mozambique". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002442.

Glynn, JR, Fielding, K, Mzembe, T, Sichali, L, Banda, L, Mclean, E, Kanjala, C, Crampin, AC, Ponnighaus, J, Warndorff, D and Fine, P (2021). Data for: “BCG revaccination in Malawi: 30-year follow-up of a large, randomised, double-blind placebo-controlled trial”. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002443.

Mulwa, S, Chimoyi, L, Agbla, S, Osindo, J, Wambiya, EO, Gourlay, A, Birdthistle, I, Ziraba, A and Floyd, S (2021). Impact of the DREAMS interventions on educational attainment among adolescent girls and young women: Causal analysis of a prospective cohort in urban Kenya. Analytical datasets. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0255165.s012

Mulwa, S, Chimoyi, L, Agbla, S, Osindo, J, Wambiya, EO, Gourlay, A, Birdthistle, I, Ziraba, A and Floyd, S (2021). Number and proportions of AGYW aged 15–22 years retained in the study vs those lost to follow up at endline (2019), by AGYW characteristics. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0255165.s008

Mulwa, S, Chimoyi, L, Agbla, S, Osindo, J, Wambiya, EO, Gourlay, A, Birdthistle, I, Ziraba, A and Floyd, S (2021). Number of interventions accessed by age group, schooling status at baseline, and invitation to DREAMS. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0255165.s009

Mulwa, S, Chimoyi, L, Agbla, S, Osindo, J, Wambiya, EO, Gourlay, A, Birdthistle, I, Ziraba, A and Floyd, S (2021). Results from sensitivity analysis for associations between DREAMS and educational attainment. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0255165.s011

Marchant, T (2021). Maternal and newborn health project in Gombe state, northeast Nigeria. Data from clinical observations, exit interviews, follow up surveys between 2016 and 2019. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001709.

Marchant, T (2021). Maternal and newborn health project in Gombe state, northeast Nigeria. Data from household, health facility and birth attendant surveys between 2015 and 2019. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001712.

Mutua, MK, Wado, YD, Malata, M, Kabiru, CW, Akwara, E, Melesse, DY, Fall, NA, Coll, CVN, Faye, C and Barros, AJD (2021). Additional file 1 of Wealth-related inequalities in demand for family planning satisfied among married and unmarried adolescent girls and young women in sub-Saharan Africa. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14795557.v1

Olaniran, A (2021). Data for: "Informed Decisions for Actions to Improve Maternal and Newborn Health: The role of context in the implementation of Nigeria Healthcare Quality Initiative in Lagos State, Nigeria". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001954.

Countdown to 2030 Health Financing Data Analysis Centre (2021). Aid for reproductive, maternal, newborn and child health: data generated using the Muskoka2 method, 2002-2019. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002272.

Shakur-Still, H, Arribas, M, Roberts, I, Chaudhri, R, Geer, A, Prowse, D, Lubeya, MK, Kayani, A, Javaid, K and Grassin Delyle, S (2021). WOMAN-PharmacoTXA Trial: Pharmacokinetics and pharmacodynamics of tranexamic acid in women having caesarean section birth - Extended data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002164.

Goncalves, B (2021). Data for: "Estimation of country-level incidence of early-onset invasive Group B Streptococcus disease in infants using Bayesian methods". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002118.

Mendelsohn, SC, Fiore-Gartland, A, Penn-Nicholson, A, Mulenga, H, Kimbung, S, Borate, B, Hadley, K, Hikuam, C, Musvosvi, M, Bilek, N, Erasmus, M, Jaxa, L, Raphela, R, Nombida, O, Kaskar, M, Sumner, T, White, RG, Innes, C, Brumskine, W, Hiemstra, A, Malherbe, ST, Hassan-Moosa, R, Tameris, M, Walzl, G, Naidoo, K, Churchyard, G, Scriba, TJ and Hatherill, M (2021). Validation of Correlates of Risk of TB Disease in High Risk Populations (CORTIS-HR) Study: Public, subject-level RISK11 signature scores and metadata. [Data Collection]. University of Cape Town. https://doi.org/10.25375/uct.14176484.v1

Tadesse, FG, Ashine, T, Teka, H, Esayas, E, Messenger, LA, Chali, W, Meerstein-Kessel, L, Walker, T, Wolde Behaksra, S, Lanke, K, Heutink, R, Jeffries, CL, Mekonnen, DA, Hailemeskel, E, Tebeje, SK, Tafesse, T, Gashaw, A, Tsegaye, T, Emiru, T, Kigozi, S, Bogale, EA, Yohannes, G, Kedir, S, Shumie, G, Sabir, SA, Mumba, P, Dengela, D, Kolaczinski, JH, Wilson, A, Churcher, TS, Chibsa, S, Murphy, M, Balkew, M, Irish, S, Drakeley, C, Gadisa, E and Bousema, T (2021). Anopheles stephensi mosquitoes as vectors of Plasmodium vivax and falciparum, Horn of Africa, 2019. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.gf1vhhmnt

Bousema, T (2021). Data from: Higher gametocyte production and mosquito infectivity in chronic compared to incident Plasmodium falciparum infections. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.pc866t1n3

Snetselaar, J, Rowland, M, Manunda, B, Kisengwa, E, Small, G, Malone, D, Mosha, F and Kirby, M (2021). Experimental data of two IRS hut trials with broflanilide 50WP conducted in Moshi, Tanzania. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001948.

Bousema, T, Meibalan, E, Barry, A, Gibbins, M, Awandu, S, Meerstein-Kessel, L, Achar, F, Bopp, S, Moxon, C, Diarra, A, Debe, S, Ouedraogo, N, Barry-Some, I, Badoum, E, Fagnima, T, Lanke, K, Goncalves, B, Bradley, J, Wirth, D, Drakeley, C, Guelbeogo, W, Tiono, A, Marti, M, Gibbins, MP, Achcar, F, Ouédraogo, N, Badoum, ES, Fagnima, T, Gonçalves, BP, Guelbeogo, WM and Tiono, AB (2021). Plasmodium falciparum gametocyte density and infectivity in peripheral blood and skin tissue of naturally infected parasite carriers in Burkina Faso. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.g1jwstqmk

Scriba, TJ, Fiore-Gartland, A, Penn-Nicholson, A, Mulenga, H, Kimbung Mbandi, S, Borate, B, Mendelsohn, SC, Hadley, K, Hikuam, C, Kaskar, M, Musvosvi, M, Bilek, N, Self, S, Sumner, T, White, RG, Erasmus, M, Jaxa, L, Raphela, R, Innes, C, Brumskine, W, Hiemstra, A, Malherbe, ST, Hassan-Moosa, R, Tameris, M, Walzl, G, Naidoo, K, Churchyard, G and Hatherill, M (2021). RISK11 signature scores for the biomarker-guided tuberculosis preventive therapy (CORTIS) randomised controlled trial. [Data Collection]. University of Cape Town. https://doi.org/10.25375/uct.13573337.v1

Sweeney, S, Cunnama, L, Laurence, Y, Garcia Baena, I, Kairu, A, Minyewelet, M, Eyob, H, Chatterjee, S, Toshniwal, M, Chikovani, I, Shingelia, N, Capeding, TJ and Vassall, A (2021). Value TB Dataset: costs per direct & ancillary service. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/UGYNGT

Fielding, K (2020). Data set for the comparison of the performance of QuantiFERON-TB Gold Plus with QuantiFERON-T Gold in-tube among highly TB exposed gold miners in South Africa. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001891.

Russell, TW, Golding, N, Hellewell, J, Abbott, S, Pearson, CAB, Van zandvoort, K, Jarvis, CI, Gibbs, H, Liu, Y, Eggo, RM, Edmunds, WJ, Kucharski, AJ and CMMID COVID-19 working group (2020). Reconstructing the global dynamics of unreported COVID-19 cases and infections. [Data Collection]. Github. https://github.com/thimotei/covid_underreporting

WOMAN trial collaborative group (2020). The WOMAN (World Maternal Antifibrinolytic) Trial Dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001811.

Russell, TW, Wu, JT, Clifford, S, CMMID COVID-19 working group, Edmunds, WJ, Kucharski, AJ and Jit, M (2020). thimotei/covid_travel_restrictions. [Data Collection]. Github. https://github.com/thimotei/covid_travel_restrictions

Abbas, KM (2020). vaccine-impact/epi_covid. [Data Collection]. Github. https://github.com/vaccine-impact/epi_covid

Geer, A and Prowse, D (2020). PharmacoTXA Trial: Pharmacokinetics of Tranexamic Acid after oral, intramuscular or intravenous administration: a prospective, randomised, cross-over trial in healthy volunteers. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://freebird.lshtm.ac.uk/home/available-trials/

Limbada, M, Shibwela, O, Macleod, D and Ayles, H (2020). Data for: Acceptability and Preferences of two different Community Models of ART delivery in a high prevalence Urban Setting in Zambia, nested within the HPTN 071 (PopART) trial. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001657.

Zameer, M, Phillips-White, N, Folorunso, O, Belt, R, Setayesh, H, Asghar, N and Chandio, A (2020). Immunization supply chain equity metrics for Pakistan. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.12032106.v1

Dingle, A, Schaeferhoff, M, Borghi, J, Lewis Sabin, M, Arregoces, L, Martinez-alvarez, M and Pitt, C (2020). Aid for reproductive, maternal, newborn and child health: data and analysis from application of the Muskoka2 method, 2002-2017. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001526.

Prem, K, Liu, Y, Russell, TW, Kucharski, AJ, Eggo, RM, Davies, NG, Jit, M, Klepac, P, Flasche, S, Clifford, S, Pearson, CAB, Munday, JD, Abbott, S, Gibbs, H, Rosello, A, Quilty, BJ, Jombart, T, Sun, F, Diamond, C, Gimma, A, Van zandvoort, K, Funk, S, Jarvis, CI, Edmunds, WJ, Bosse, NI and Hellewell, J (2020). Age-structured SEIR model for COVID-19 outbreak in Wuhan, China. [Data Collection]. Github. https://github.com/kieshaprem/covid19-agestructureSEIR-wuhan-social-distancing

Abbas, KM, Van Zandvoort, K, Brisson, M and Jit, M (2020). Effects of updated demography, disability weights, and cervical cancer burden on estimates of human papillomavirus vaccination impact at the global, regional, and national levels: a PRIME modelling study. [Data Collection]. The Lancet Global Health. https://doi.org/10.1016/S2214-109X(20)30022-X

Wyres, KL, Nguyen, TNT, Lam, MMC, Judd, LM, van Vinh Chau, N, Dance, DAB, Ip, M, Karkey, A, Ling, CL, Miliya, T, Newton, PN, Lan, NPH, Sengduangphachanh, A, Turner, P, Veeraraghavan, B, Vinh, PV, Vongsouvath, M, Thomson, NR, Baker, S and Holt, KE (2020). Data for, "Genomic surveillance for hypervirulence and multi-drug resistance in invasive Klebsiella pneumoniae from south and southeast Asia.". [Data Collection]. Monash University. https://doi.org/10.26180/5c67982956721

Gourlay, A, Birdthistle, I, Mthiyane, NT, Orindi, BO, Muuo, S, Kwaro, D, Shahmanesh, M, Baisley, K, Ziraba, A and Floyd, S (2019). Awareness and uptake of layered HIV prevention programming for young women: analysis of population-based surveys in three DREAMS settings in Kenya and South Africa. [Data Collection]. BMC Public Health. https://doi.org/10.1186/s12889-019-7766-1

Benova, L, Moller, A and Moran, AC (2019). Qualitative data for: "The landscape of validation of global maternal and newborn health indicators through key informant interviews". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001403.

O'reilly, K, Hendrickx, E, Kharisma, DD, Wilastonegoro, NN, Carrington, LB, Elyazar, IRF, Kucharsk, AJ, Lowe, R, Flasche, S, Pigott, DM, Reiner Jr, RC, Edmunds, J, Hay, SI, Yakob, L, Shepard, DS and Brady, O (2019). Data and code from: Estimating the burden of dengue and the impact of release of wMel Wolbachia infected mosquitoes in Indonesia: a modelling study. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.8243168.v1

Umar, N and Marchant, T (2019). Respectful Maternity Care – Facility Births Experience – Data collection tools. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001955.

Barreaux, AMG, Oumbouke, W, Zran Tia, I, Brou, N, Koffi, AA, N'guessan, R and Thomas, MB (2019). Semi-field evaluation of the cumulative effects of a “Lethal House Lure” on malaria mosquito mortality. [Data Collection]. Malaria Journal. https://doi.org/10.1186/s12936-019-2936-2

Halliday, K, Oswald, W, Mcharo, C, Beaumont, E, Gichuki, P, Kepha, S, Witek-mcmanus, S, Matendechero, S, El-Busaidy, H, Muendo, R, Chiguzo, A, Cano, J, Karanja, M, Musyoka, L, Safari, T, Mutisya, L, Muye, I, Sidigu, M, Anderson, R, Allen, E, Brooker, S, Mwandawiro, C, Njenga, S and Pullan, RL (2019). Household and Parasitology Survey, Kwale County, Kenya, 2015. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001170.

Oswald, W, Halliday, K, Mcharo, C, Witek-McManus, S, Kepha, S, Gichuki, PM, Cano, J, Diaz-Ordaz, K, Allen, E, Mwandawiro, CS, Anderson, RM, Brooker, S, Pullan, RL and Njenga, SM (2019). Sanitation conditions and STH infection among school-aged children in Kwale County, Kenya, 2015. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001306.

Spicer, N and Wickremasinghe, D (2019). Protocol for the IDEAS qualitative study of scalability and sustainability of maternal and newborn health innovations in northeast Nigeria, Ethiopia and Uttar Pradesh, India. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001612.

Wick, RR, Judd, LM and Holt, KE (2019). Additional file 2 of: Performance of neural network basecalling tools for Oxford Nanopore sequencing. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.8319506.v1

Gunasekara, CJ, Scott, CA, Laritsky, E, Baker, MS, MacKay, H, Duryea, JD, Kessler, NJ, Hellenthal, H, Wood, AC, Hodges, KR, Gandhi, M, Hair, AB, Silver, M, Moore, SE, Prentice, AM, Li, Y, Chen, R, Coarfa, C and Waterland, RA (2019). Additional file 1: of A genomic atlas of systemic interindividual epigenetic variation in humans. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.8217572.v1

Sikazwe, I, Eshun-Wilson, I, Sikombe, K, Czaicki, N, Somwe, P, Mody,, A, Simbeza, S, Glidden, DV, Chizema, E, Mulenga, LB, Padian, N, Duncombe, CJ, Bolton-Moore, C, Beres, LK, Holmes, CB and Geng, E (2019). Retention and viral suppression in a cohort of HIV patients on antiretroviral therapy in Zambia: Regionally representative estimates using a multistage-sampling-based approach. [Data Collection]. PLOS Medicine. https://doi.org/10.1371/journal.pmed.1002811

Hawkey, J, Le Hello, S, Doublet, B, Granier, SA, Hendriksen, RS, Fricke, WF, Ceyssens, P, Gomart, C, Billman-Jacobe, H, Holt, KE and Weill, F (2019). Global phylogenomics of multidrug-resistant Salmonella enterica serotype Kentucky ST198. [Data Collection]. Microbial Genomics. https://doi.org/10.1099/mgen.0.000269

Miller, L, Chaudhri, S, Beaumont, D, Kayani, A, Javaid, K, Chaudhri, R, Edwards, P, Brenner, A, Roberts, I and Shakur-still, H (2019). WOMAN-2 Pilot Study Data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001109.

Penn-Nicholson, A, Hraha, T, Thompson, EG, Sterling, D, Kimbung Mbandi, S, Wall, K, Fisher, M, Suliman, S, Shankar, S, Hanekom, WA, Janjic, N, Hatherill, M, Kaufmann, SH, Sutherland, J, Walzl, G, De Groote, MA and Ochsner, U (2019). Discovery and validation of a prognostic proteomic signature for tuberculosis progression: A prospective cohort study. [Data Collection]. PLOS Medicine. https://doi.org/10.1371/journal.pmed.1002781

Gladstone, RA, Lo, SW, Lees, JA, Croucher, NJ, van Tonder, AJ, Corander, J, Page, AJ, Marttinen, P, Bentley, LJ, Ochoa, TJ, Leung Ho, P, du Plessis, M, Cornick, JE, Kwambana-Adams, B, Benisty, R, Nzenze, SA, Madhi, SA, Hawkins, PA, Everett, DB, Antonio, M, Dagan, R, Klugman, KP, von Gottberg, A, McGee, L, Breiman, RF and Bentley, SD (2019). International genomic definition of pneumococcal lineages, to contextualise disease, antibiotic resistance and vaccine impact. [Data Collection]. EBio Medicine. https://doi.org/10.1016/j.ebiom.2019.04.021

Wyres, KL, Wick, RR, Judd, LM, Froumine, R, Tokolyi, A, Gorrie, CL, Lam, MM, Duchêne, S, Jenney, A and Holt, K (2019). Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae. [Data Collection]. PLoS Genetics. https://doi.org/10.1371/journal.pgen.1008114

Wailan​, AM, Coll, F, Heinz, E, Tonkin-Hill, G, Corander, J, Feasey, NA and Thomson, NR (2019). rPinecone: Define sub-lineages of a clonal expansion via a phylogenetic tree. [Data Collection]. Microbial Genomics. https://doi.org/10.1099/mgen.0.000264

Blencowe, H, Krasevec, J, de Onis, M, Black, RE, An, X, Stevens, GA, Borghi, E, Hayashi, C, Estevez, D, Cegolon, L, Shiekh, S, Ponce Hardy, V, Lawn, JE and Cousens, S (2019). Supporting information for National, regional, and worldwide estimates of low birthweight rates in 2015, with trends from 2000: a systematic analysis. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001090.

Moyes, CL, Wiebe, A, Gleave, K, Trett, A, Hancock, PA, Padonou, GG, Chouaïbou, MS, Sovi, A, Abuelmaali, SA, Ochomo, E, Antonio-Nkondjio, C, Dengela, D, Kawada, H, Dabire, RK, Donnelly, MJ, Mbogo, C, Fornadel, C and Coleman, M (2019). Data from: Analysis-ready datasets for insecticide resistance phenotype and genotype frequency in African malaria vectors. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.dn4676s

Mandeng, SE, Awono-Ambene, HP, Bigoga, JD, Ekoko, WE, Binyang, J, Piameu, M, Mbakop, LR, Fesuh, BN, Mvondo, N, Tabue, R, Nwane, P, Mimpfoundi, R, Toto, JC, Kleinschmidt, I, Knox, TB, Mnzava, AP, Donnelly, MJ, Fondjo, E and Etang, J (2019). Spatial and temporal development of deltamethrin resistance in malaria vectors of the Anopheles gambiae complex from North Cameroon. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0212024

Torres, AG, Vidal, RM, Muhsen, K, Tennant, SM, Svennerholm, A, Sow, SO, Sur, D, Zaidi, AKM, Faruque, ASG, Saha, D, Adegbola, R, Hossain, MJ, Alonso, PL, Breiman, RF, Bassat, Q, Tamboura, B, Sanogo, D, Onwuchekwa, U, Manna, B, Ramamurthy, T, Kanungo, S, Ahmed, S, Qureshi, S, Quadri, F, Hossain, A, Das, SK, Antonio, M, Mandomando, I, Nhampossa, T, Acácio, S, Omore, R, Ochieng, JB, Oundo, JO, Mintz, ED, O’Reilly, CE, Berkeley, LY, Livio, S, Panchalingam, S, Nasrin, D, Farag, TH, Wu, Y, Sommerfelt, H, Robins-Browne, RM, Del Canto, F, Hazen, TH, Rasko, DA, Kotloff, KL, Nataro, JP and Levine, MM (2019). Colonization factors among enterotoxigenic Escherichia coli isolates from children with moderate-to-severe diarrhea and from matched controls in the Global Enteric Multicenter Study (GEMS). [Data Collection]. PLoS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0007037

Bastiaens, GJH, Tiono, AB, Okebe, J, Pett, HE, Coulibaly, SA, Gonçalves, BP, Affara, M, Ouédraogo, A, Bougouma, EC, Sanou, GS, Nébié, I, Bradley, J, Lanke, KHW, Niemi, M, Sirima, SB, d’Alessandro, U, Bousema, T and Drakeley, C (2018). Data from: Safety of single low-dose primaquine in glucose-6-phosphate dehydrogenase deficient falciparum-infected African males: two open-label, randomized, safety trials. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.230ps

Chimbindi, N, Birdthistle, I, Shahmanesh, M, Osindo, J, Mushati, P, Ondeng’e, K, Zuma, T, Chiyaka, T, Kyegombe, N, Hargreaves, J, Busza, J, Floyd, S and Seeley, J (2018). Translating DREAMS into practice: Early lessons from implementation in six settings. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0208243

Wickremasinghe, D (2018). IDEAS Phase 2 project – Village Health Worker Scheme sustainability study in Gombe State, Nigeria: Protocol and topic guides. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001503.

de Lencastre, H, Manna, S, Dunne, EM, Ortika, BD, Pell, CL, Kama, M, Russell, FM, Mungun, T, Mulholland, KE, Hinds, J and Satzke, C (2018). Discovery of a Streptococcus pneumoniae serotype 33F capsular polysaccharide locus that lacks wcjE and contains a wcyO pseudogene. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0206622

Herbst, K, Pillay, D, Baisley, K, Barnighausen, T and Koole, O (2018). DREAMS baseline study in young men aged 20-29 years in rural KwaZulu Natal, South Africa, 2006-2015. [Data Collection]. INDEPTH Network. https://doi.org/10.7796/AHRI.DREAMS.DREAMS.Male.Baseline.2018.v1

Candfield, S, Mukora, R, Monkwe, S, Charalambous, S, Sweeney, S, Grant, AD, Fielding, K and Vassall, A (2018). TB Fast Track patient cost data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000815.

Shakur-Still, H, Roberts, I, Fawole, B, Kuti, M, Olayemi, OO, Bello, A, Huque, S, Ogunbode, O, Kotila, T, Aimakhu, CO, Okunade, OA, Olutogun, T, Adetayo, CO, Dallaku, K, Mansmann, U, Hunt, BJ, Pepple, T and Balogun, E (2018). WOMAN-ETAC Dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000788.

Knight, GM, Zimic, M, Funk, S, Gilman, RH, Friedland, JS and Grandjean, L (2018). Follow up time from The relative fitness of drug-resistant Mycobacterium tuberculosis: a modelling study of household transmission in Peru. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.6480617.v1

Mwakalinga, VM, Sartorius, BKD, Limwagu, AJ, Mlacha, YP, Msellemu, DF, Chaki, PP, Govella, NJ, Coetzee, M, Dongus, S and Killeen, GF (2018). Data from: Topographic mapping of the interfaces between human and aquatic mosquito habitats to enable barrier-targeting of interventions against malaria vectors. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.77vq6gs

Soremekun, S (2018). inSCALE Baseline Cross-Sectional Survey Uganda. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000796.

Trotter, C, Cooper, L, Greenwood, B and Boukary, R (2018). MenAfriCar_Household_Serology. [Data Collection]. University of Cambridge, Cambridge, United Kingdom. https://doi.org/10.17863/CAM.11437

Avan, B and Berhanu, D (2017). Community Base Newborn Care Evaluation, Ethiopia 2013-2017 - Contextual. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Avan, B and Berhanu, D (2017). Community Base Newborn Care Evaluation, Ethiopia 2013-2017 - Health Centre Survey Data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001445.

Avan, B and Berhanu, D (2017). Community Base Newborn Care Evaluation, Ethiopia 2013-2017 - Health Post and Health Extension Work Survey Data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Avan, B and Berhanu, D (2017). Community Base Newborn Care Evaluation, Ethiopia 2013-2017 - Household Survey Data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001112.

Avan, B (2017). Community Base Newborn Care Evaluation, Ethiopia 2013-2017 - Woman's Development Army Survey Data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Omendo, I, Mogeni, P, Bousema, T, Rockett, KA, Amambua-Ngwa, A, Oyier, I, Stevenson, JC, Baidjoe, A, de Villiers, EP, Fegan, G, Ross, A, Hubbart, C, Jeffreys, A, Williams, TN, Kwiatkowski, D and Bejon, P (2017). Micro-epidemiological structuring of Plasmodium falciparum parasite populations in regions with varying transmission intensities in Africa. [Data Collection]. Wellcome Open Research. http://doi.org/10.12688/wellcomeopenres.10784.2

Goodman, C, Bruxvoort, K and Challenger, E (2017). IMPACT2 patient adherence to Artemether-Lumefantrine: Smart blister pack time stamp data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.261.

Kabudula, C and Rentsch, C (2017). Point-of-contact Interactive Record Linkage (PIRL). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.998867

Diallo, K, Gamougam, K, Daugla, DM, Harrison, OB, Bray, JE, Caugant, DA, Lucidarme, J, Trotter, CL, Hassan-King, M, Stuart, JM, Manigart, O, Greenwood, BM and Maiden, MCJ (2017). Hierarchical genomic analysis of carried and invasive serogroup A Neisseria meningitidis during the 2011 epidemic in Chad. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.3785438

Hanron, AE, Billman, ZP, Seilie, AM, Olsen, TM, Fishbaugher, M, Chang, M, Rueckle, T, Andenmatten, N, Greenhouse, B, Arinaitwe, E, Rek, J, Das, S, Domingo, GJ, Shipman, K, Kappe, SH, Kublin, JG and Murphy, SC (2017). Multiplex, DNase-free one-step reverse transcription PCR for Plasmodium 18S rRNA and spliced gametocyte-specific mRNAs. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.3784184

Hayes, R, Floyd, S, Schaap, A, Shanaube, K, Bock, P, Sabapathy, K, Griffith, S, Donnell, D, Piwowar-Manning, E, El-Sadr, W, Beyers, N, Ayles, H and Fidler, S (2017). A universal testing and treatment intervention to improve HIV control: One-year results from intervention communities in Zambia in the HPTN 071 (PopART) cluster-randomised trial. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pmed.1002292.

WOMAN Trial Collaborators (2017). WOMAN Trial - Clinical and contextual factors surrounding the deaths of 483 women following post-partum haemorrhage in developing countries. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://freebird.lshtm.ac.uk/home/available-trials/

Bousema, T, Stresman, G, Baidjoe, AY, Bradley, J, Knight, P, Stone, W, Osoti, V, Makori, E, Owaga, C, Odongo, W, China, P, Shagari, S, Doumbo, OK, Sauerwein, RW, Kariuki, S, Drakeley, C, Stevenson, J and Cox, J (2017). Data from: The impact of hotspot-targeted interventions on malaria transmission in Rachuonyo south district in the western Kenyan highlands: a cluster-randomized controlled trial. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.nr8d8

Oswald, W and Witek-McManus, S (2017). TUMIKIA Project Laboratory Kato-Katz Forms. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001312.

Elmes, J, Skovdal, M, Nhongo, K, Ward, H, Campbell, C, Hallett, TB, Nyamukapa, C, White, PJ and Gregson, S (2017). Selected interview transcript quotes from: "A reconfiguration of the sex trade: How social and structural changes in eastern Zimbabwe left women involved in sex work and transactional sex more vulnerable". [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0171916.s001

Grollman, C, Arregoces, L, Pitt, C, Borghi, J, Martinez-Alvarez, M, Powell-Jackson, T, Hsu, J and Greco, G (2017). Countdown ODA+ Dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.127.

N'guessan, R, Odjo, A, Ngufor, C, Malone, D and Rowland, M (2016). Experimental hut data. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0165925.s001

Kambiré, D, Soeters, HM, Ouédraogo-Traoré, R, Medah, I, Sangare, L, Yaméogo, I, Sawadogo, G, Ouédraogo, A, Hema-Ouangraoua, S, McGee, L, Srinivasan, V, Aké, F, Congo-Ouédraogo, M, Sanou, S, Ky Ba, A, Novak, RT and Van Beneden, C (2016). Nationwide Trends in Bacterial Meningitis before the Introduction of 13-Valent Pneumococcal Conjugate Vaccine—Burkina Faso, 2011–2013. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0166384.s001

Webb, E (2016). Data from a cluster randomized trial in Uganda concerning the management of fever cases in public health facilities. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.121.

Hanifa, Y, Fielding, K, Grant, AD and Churchyard, GJ (2016). Data for: "The utility of repeat Xpert MTB/RIF testing to diagnose tuberculosis in HIV-positive adults with initial negative result". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.284.

Hanifa, Y (2016). Diagnostic accuracy of lateral flow urine LAM assay for TB screening of adults with advanced immunosuppression attending routine HIV care in South Africa. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.2182729.v1

Van Voorhis, WC, Adams, JH, Adelfio, R, Ahyong, V, Akabas, MH, Alano, P, Alday, A, Alemán Resto, Y, Alsibaee, A, Alzualde, A, Andrews, KT, Avery, SV, Avery, VM, Ayong, L, Baker, M, Baker, S, Ben Mamoun, C, Bhatia, S, Bickle, Q, Bounaadja, L, Bowling, T, Bosch, J, Boucher, LE, Boyom, FF, Brea, J, Brennan, M, Burton, A, Caffrey, CR, Camarda, G, Carrasquilla, M, Carter, D, Belen Cassera, M, Chih-Chien Cheng, K, Chindaudomsate, W, Chubb, A, Colon, BL, Colón-López, DD, Corbett, Y, Crowther, GJ, Cowan, N, D’Alessandro, S, Le Dang, N, Delves, M, DeRisi, JL, Du, AY, Duffy, S, Abd El-Salam El-Sayed, S, Ferdig, MT, Fernández Robledo, JA, Fidock, DA, Florent, I, Fokou, PVT, Galstian, A, Gamo, FJ, Gokool, S, Gold, B, Golub, T, Goldgof, GM, Guha, R, Guiguemde, WA, Gural, N, Guy, RK, Hansen, MAE, Hanson, KK, Hemphill, A, Hooft van Huijsduijnen, R, Horii, T, Horrocks, P, Hughes, TB, Huston, C, Igarashi, I, Ingram-Sieber, K, Itoe, MA, Jadhav, A, Naranuntarat Jensen, A, Jensen, LT, Jiang, RHY, Kaiser, A, Keiser, J, Ketas, T, Kicka, S, Kim, S, Kirk, K, Kumar, VP, Kyle, DE, Lafuente, MJ, Landfear, S, Lee, N, Lee, S, Lehane, AM, Li, F, Little, D, Liu, L, Llinás, M, Loza, MI, Lubar, A, Lucantoni, L, Lucet, I, Maes, L, Mancama, D, Mansour, NR, March, S, McGowan, S, Medina Vera, I, Meister, S, Mercer, L, Mestres, J, Mfopa, AN, Misra, RN, Moon, S, Moore, JP, Morais Rodrigues da Costa, F, Müller, J, Muriana, A, Nakazawa Hewitt, S, Nare, B, Nathan, C, Narraidoo, N, Nawaratna, S, Ojo, KK, Ortiz, D, Panic, G, Papadatos, G, Parapini, S, Patra, K, Pham, N, Prats, S, Plouffe, DM, Poulsen, S, Pradhan, A, Quevedo, C, Quinn, RJ, Rice, CA, Abdo Rizk, M, Ruecker, A, St. Onge, R, Salgado Ferreira, R, Samra, J, Robinett, NG, Schlecht, U, Schmitt, M, Silva Villela, F, Silvestrini, F, Sinden, R, Smith, DA, Soldati, T, Spitzmüller, A, Stamm, SM, Sullivan, DJ, Sullivan, W, Suresh, S, Suzuki, BM, Suzuki, Y, Swamidass, SJ, Taramelli, D, Tchokouaha, LRY, Theron, A, Thomas, D, Tonissen, KF, Townson, S, Tripathi, AK, Trofimov, V, Udenze, KO, Ullah, I, Vallieres, C, Vigil, E, Vinetz, JM, Voong Vinh, P, Vu, H, Watanabe, N, Weatherby, K, White, PM, Wilks, AF, Winzeler, EA, Wojcik, E, Wree, M, Wu, W, Yokoyama, N, Zollo, PHA, Abla, N, Blasco, B, Burrows, J, Laleu, B, Leroy, D, Spangenberg, T, Wells, T and Willis, PA (2016). Open Source Drug Discovery with the Malaria Box Compound Collection for Neglected Diseases and Beyond. [Data Collection]. PLOS Pathogens. https://doi.org/10.1371/journal.ppat.1005763.s002

Karat, AS, Omar, T, von Gottberg, A, Tlali, M, Chihota, VN, Churchyard, GJ, Fielding, KL, Johnson, S, Martinson, NA, McCarthy, K, Wolter, N, Wong, EB, Charalambous, S and Grant, AD (2016). Autopsy Prevalence of Tuberculosis and Other Potentially Treatable Infections among Adults with Advanced HIV Enrolled in Out-Patient Care in South Africa: Lesedi Kamoso study data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.122.

Karat, A, Tlali, M, Fielding, K, Charalambous, S, Chihota, VN, Churchyard, GJ, Hanifa, Y, Johnson, S, McCarthy, K, Martinson, NA, Omar, T, Kahn, K, Chandramohan, D and Grant, AD (2016). Measuring mortality due to HIV-associated tuberculosis among adults in South Africa: comparing verbal autopsy, minimally-invasive autopsy, and research data. Data from the Lesedi Kamoso study. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.169.

Lammie, PJ, Kamgno, J, Nguipdop-Djomo, P, Gounoue, R, Téjiokem, M and Kuesel, AC (2016). Loa loa Alben Trial data. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0004492.s002.

Vermund, SH, Mayhew, S, Ploubidis, G, Sloggett, A, Church, K, Obure, CD, Birdthistle, I, Sweeney, S, Warren, CE, Watts, C, Vassall, A and Integra Initiative (2016). Innovation in Evaluating the Impact of Integrated Service-Delivery: The Integra Indexes of HIV and Reproductive Health Integration. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0146694

Lal, S (2015). Acute Uncomplicated Febrile Illness in Children Aged 2-59 months in Zanzibar - Aetiologies, Antibiotic Treatment and Outcome. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.26.

Weobong, B, Ten asbroek, G, Soremekun, S, Gram, L, Amenga-etego, S, Danso, S, Owusu-agyei, S, Prince, M and Kirkwood, B (2015). Data from: "Association between probable postnatal depression and increased infant mortality and morbidity: findings from the DON population-based cohort study in rural Ghana". [Data Collection]. Dryad. https://doi.org/10.5061/dryad.4tj59

Clasen, T (2015). Evaluation of WaterAid sanitation in Odisha, India (Household Baseline) (June 2015). [Data Collection]. Research Gate. https://doi.org/10.13140/RG.2.1.1043.4726

Lal, S (2015). Appropriate Treatment in Ugandan Drug Shops. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.1.

Cairns, M, Woukeu, A and Tagbor, H (2015). Screening and treatment of malaria in pregnancy in West Africa. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.2.

Hill, Z (2015). IDEAS project - Study of behaviour change in maternal and newborn care in Ethiopia. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.126.

Marchant, T and Schellenberg, J (2014). Coverage and Content of Health Contacts for Mothers and Newborns in Uttar Pradesh, Ethiopia and Nigeria, 2012. [Data Collection]. UK Data Service, Colchester, Essex, United Kingdom. https://doi.org/10.5255/UKDA-SN-7585-1

Phillips, A, Cambiano, V, Nakagawa, F, Magubu, T, Miners, A, Ford, D, Pillay, D, De Luca, A, Lundgren, J and Revill, P (2014). Cost-Effectiveness of HIV Drug Resistance Testing to Inform Switching to Second Line Antiretroviral Therapy in Low Income Settings: Supporting material. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.1155223

Jombart, T, Cori, A, Didelot, X, Cauchemez, S, Fraser, C and Ferguson, N (2014). Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data. [Data Collection]. PLOS Computational Biology. https://doi.org/10.1371/journal.pcbi.1003457

Fielding, K, Lewis, J and Jiang, S (2013). Effectiveness of electronic reminders to improve medication adherence in tuberculosis patients: a cluster-randomised trial. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.4.

Lubell, Y, Mills, A, Whitty, CJ and Staedke, SG (2010). Model S1 - An Economic Evaluation of Home Management of Malaria in Uganda: An Interactive Markov Model. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0012439.s001