Lim, A and Brady, OJ (2024). OpenDengue/master-repo. [Data Collection]. GitHub. https://github.com/OpenDengue/master-repo

Natukunda, A, Nkurunungi, G, Zirimenya, L, Nassuuna, J, Elliott, AM and Webb, E (2024). Data supporting "Does schistosome or malaria exposure contribute to urban-rural differences in vaccine responses in Uganda? A causal mediation analysis using data from three linked randomised controlled trials.". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003761.

Nkurunungi, G, Nassuuna, J, Natukunda, A, Zirimenya, L, Webb, E and Elliott, A (2024). Data supporting "The effect of intensive praziquantel treatment on vaccine-specific responses among schoolchildren in Ugandan schistosomiasis-endemic islands: results of the POPVAC A randomised, controlled trial". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003758.

Zirimenya, L, Natukunda, N, Nassuuna, N, Nkurunungi, G, Elliott, AM and Webb, E (2024). Data supporting "The effect of intermittent preventive treatment for malaria with dihydroartemisinin-piperaquine on vaccine-specific responses among schoolchildren in rural Uganda: results of the POPVAC B randomised, controlled trial". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003759.

Nassuuna, J, Zirimenya, L, Nkurunungi, G, Natukunda, A, Webb, E and Elliott, AM (2024). Data supporting: "The effect of BCG revaccination on the response to unrelated vaccines in urban Ugandan adolescents: results of the POPVAC C randomised, controlled trial". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003760.

Koech, A, Omuse, G, Mugo, A, Mwaniki, I, Mutunga, J, Mukhanya, M, Wanje, O, Mwashigadi, G, Katana, G, Craik, R, Von Dadelszen, P, Le Doare, K, Temmermen, M and The PRECISE Network (2024). SARS-CoV-2 Seroprevalence in Kenya dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003755.

Roca, A, Janha, R, Bah, A, Jah, H, Tourey, F, Idris, Y, Keita, S, Gaye, Y, Jallow, S, Faye-joof, T, Njie, B, Craik, R, Mohammed, N, von Dadelszen, P and D’alessandro, U (2024). SARS-CoV-2 Seroprevalence in The Gambia dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003754.

Hensen, B, Phiri, MM, Sigande, L, Schaap, A, Simuyaba, M, Zulu-Phiri, R, Mwape, L, Floyd, S, Fidler, S, Hayes, R, Simwinga, M and Ayles, H (2024). Cross sectional survey data for self-reported ever and recent (last 12 months) STI testing. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003742.

Emery, JC, Dodd, PJ, Banu, S, Frascella, B, Garden, FL, Horton, KC, Hossain, S, Law, I, van Leth, F, Marks, GB, Nguyen, HB, Nguyen, HV, Onozaki, I, Quelapio, MID, Richards, AS, Shaikh, N, Tiemersma, EW, White, RG, Zaman, K, Cobelens, F and Houben, RM (2023). epidemery/subclinical_transmission. [Data Collection]. GitHub. https://github.com/epidemery/subclinical_transmission

Gibb, R (2023). rorygibb/dengue_vietnam_ms: v1.0.0: Code base for Nature Communications MS. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10159288

Phelan, J and Thorpe, J (2023). jodyphelan/malaria-profiler. [Data Collection]. GitHub. https://github.com/jodyphelan/Malaria-Profiler

Schaap, A and Phiri, M (2023). Dataset for: "Factors associated with use of community-based, peer-led sexual and reproductive health services by adolescent boys and young men aged 18-24 in Lusaka, Zambia: A case control study nested in the Yathu Yathu Trial.". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003663.

Teoh, M (2023). Codelists for: "Can observational data be used to determine drug effectiveness?". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003590.

Carter, N, Webb, E, Lebina, L, Motsomi, K, Bosch, Z, Martinson, N and MacPherson, P (2023). Data supporting "Prevalence of subclinical pulmonary tuberculosis and its association with HIV in household contacts of tuberculosis in two South African provinces: analysis of a cluster-randomised trial". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003373.

Khan, B, Hameed, W and Iqbal Avan, B (2023). Training of maternity service providers on supportive and dignified maternity care: pre-post training assessment. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.h44j0zpq5

Keddie, SH (2023). shk313/Evaluating-sensitivity-and-specificity-from-LCM-a-simulation-study. [Data Collection]. Github. https://github.com/shk313/Evaluating-sensitivity-and-specificity-from-LCM-a-simulation-study

Floyd, S and Schaap, A (2023). Dataset for: "The impact of community-based, peer-led sexual and reproductive health services on knowledge of HIV-status among adolescents and young people aged 15-24 in Lusaka, Zambia: the Yathu Yathu cluster randomized trial". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003310.

Phelan, J and Manko, E (2023). jodyphelan/malaria-db. [Data Collection]. GitHub. https://github.com/jodyphelan/malaria-db

Parker, E and Horne, E (2022). opensafely/ckd-coverage-ve. [Data Collection]. Github. https://github.com/opensafely/ckd-coverage-ve

Klim, H and Fornace, KM (2022). hklim06/Quantifying-human-animal-contact-rates-in-Malaysian-Borneo. [Data Collection]. GitHub. https://github.com/hklim06/Quantifying-human-animal-contact-rates-in-Malaysian-Borneo

van zandvoort, K, Bobe, MO, Hassan, AI, Abdi, MI, Ahmed, MS, Soleman, SM, Warsame, MY, Wais, MA, Diggle, E, McGowan, CR, Satzke, C, Mulholland, K, Egeh, MM, Hassan, MM, Hergeeye, MA, Eggo, RM, Checchi, F and Flasche, S (2022). kevinvzandvoort/espicc-somaliland-digaale-survey-2019. [Data Collection]. GitHub. https://github.com/kevinvzandvoort/espicc_somaliland_digaale_contact_survey_2019

Hawkey, J, Wyres, KL, Judd, LM, Harshegyi, T, Blakeway, L, Wick, RR, Jenney, AWJ and Holt, KE (2022). Additional file 1 of ESBL plasmids in Klebsiella pneumoniae: diversity, transmission and contribution to infection burden in the hospital setting. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.20579653.v1

Hawkey, J, Wyres, KL, Judd, LM, Harshegyi, T, Blakeway, L, Wick, RR, Jenney, AWJ and Holt, KE (2022). Additional file 3 of ESBL plasmids in Klebsiella pneumoniae: diversity, transmission and contribution to infection burden in the hospital setting. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.20579659.v1

Hawkey, J, Wyres, KL, Judd, LM, Harshegyi, T, Blakeway, L, Wick, RR, Jenney, AWJ and Holt, KE (2022). Additional file 4 of ESBL plasmids in Klebsiella pneumoniae: diversity, transmission and contribution to infection burden in the hospital setting. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.20579662.v1

MRC/UVRI and White, R (2022). Respondent-Driven Sampling and Total Population Data from a Rural Ugandan Cohort, 2010: Special Licence Access. [Data Collection]. UK Data Service, Essex, United Kingdom. https://doi.org/10.5255/UKDA-SN-7462-1

Powell-Jackson, T, Fardousi, N, da Silva, E, Kovacs, R, Borghi, J, Barreto, J, Søren, K, Sampaio, J, Shimizu, HE, Gomes, L, Letícia, X and Garibaldi, G (2022). Supporting files for: Performance bonuses and the quality of primary health care delivered by family health teams in Brazil: A difference-in differences analysis. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002886.

Morris, TP, Walker, AS, Williamson, EJ and White, IR (2022). Additional file 1 of Planning a method for covariate adjustment in individually randomised trials: a practical guide. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.19613608.v1

Morris, TP, Walker, AS, Williamson, EJ and White, IR (2022). Additional file 2 of Planning a method for covariate adjustment in individually randomised trials: a practical guide. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.19613611.v1

Shah, V, Torondel, B and Nabwera, H (2022). Supplementary material for paper. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.6338746

Kerac, M, Anujuo, K, Thompson, D, McKenzie, K, Badaloo, A, Boyne, M, Forrester, T, Gluckman, P, Hanson, M, Byrne, C, Cutfield, W, Kanjala, C and Opondo, C (2022). CHANGE Cohort 1: Long-term Implications Of Nutrition (LION) dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002656.

Kerac, M, Anujuo, K, Lelijveld, N, Kanjala, C, Chimwezi, E and Nyirenda, M (2022). CHANGE Cohort 2: Chronic disease outcomes after Severe Acute Malnutrition (ChroSAM). Malawi. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002657.

Mengistie, M, Arefayne, M, Nigatu, T, Abdissa, A, Anujuo, K and Kerac, M (2022). CHANGE Cohort 3: Assessment of Long-Term Health Consequences of Acute Malnutrition (ACAM). Ethiopia. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002658.

Carvalho-Pereira, T, Eyre, MT, Zeppelini, CG, Espirito Santo, VF, Santiago, DC, Santana, R, Palma, F, Reis, M, Lustosa, R, Khalil, H, Diggle, PJ, Giorgi, E, Costa, F and Begon, M (2022). Dataset used in the assessment of the article "Basic urban services fail to neutralise environmental determinants of 'rattiness', a composite metric of rat abundance". [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5920038

Dziva Chikwari, C (2022). Community based interventions to improve HIV outcomes in youth: a cluster randomised trial in Zimbabwe (CHIEDZA). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002718.

Spadar, A (2022). AntonS-bio/entropy. [Data Collection]. GitHub. https://github.com/AntonS-bio/entropy

Trienekens, SCM, Faust, CL, Besigye, F, Pickering, L, Tukahebwa, EM, Seeley, J and Lamberton, PHL (2022). Variation in water contact behaviour and risk of Schistosoma mansoni (re)infection among Ugandan school-aged children in an area with persistent high endemicity. [Data Collection]. University of Glasgow. https://doi.org/10.5525/gla.researchdata.1233

Chapman, LAC, Barnard, RC, Russell, TW, Abbott, S, Van Zandvoort, K, Davies, NG and Kucharski, AJ (2021). Unexposed populations and potential COVID-19 burden in European countries as of 21st November 2021. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5772162

Page, AE, Dyble, M, Migliano, AB, Viguier, S, Hassan, A and Major-Smith, D (2021). Sedentarisation and maternal childcare networks: role of risk, gender and demography. [Data Collection]. OSF. https://osf.io/5cghy

Langdon, RJ, Yousefi, P, Relton, CL and Suderman, MJ (2021). Additional file 1 of Epigenetic modelling of former, current and never smokers. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.17037798.v1

Langdon, RJ, Yousefi, P, Relton, CL and Suderman, MJ (2021). Additional file 4 of Epigenetic modelling of former, current and never smokers. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.17037810.v1

Cleary, F, Nitsch, D and Prieto, D (2021). Raw data for a systematic review of statistical methodologies to evaluate progression of chronic kidney disease using electronic healthcare records. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002628.

Barasa, E, Musiega, A, Hanson, K, Nyawira, L, Mulwa, A, Molyneux, S, Maina, I, Tsofa, B, Normand, C and Jemutai, J (2021). Additional file 1 of Level and determinants of county health system technical efficiency in Kenya: two stage data envelopment analysis. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.17132986.v1

Witkowska McConnell, W, Davis, C, Sabir, SR, Garrett, A, Bradley-Stewart, A, Jajesniak, P, Reboud, J, Xu, G, Yang, Z, Gunson, R, Thomson, EC and Cooper, J (2021). Loop mediated isothermal amplification as a powerful tool for early diagnosis of hepatitis C virus. [Data Collection]. University of Glasgow. https://doi.org/10.5525/gla.researchdata.1127

Richmond, RC, Sillero-Rejon, C, Khouja, JN, Prince, C, Board, A, Sharp, G, Suderman, M, Relton, CL, Munafò, M and Gage, SH (2021). Additional file 2 of Investigating the DNA methylation profile of e-cigarette use. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.16696498.v1

Sera, F, Abbott, S and Roye, D (2021). fsera/COVIDWeather. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.5281/zenodo.5215841

Shaikh, N, McCreesh, N and Deol, A (2021). Data for: "Importance of ventilation and occupancy to Mycobacterium tuberculosis transmission rates in congregate settings". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002427.

Nampijja, M, Sembajjwe, W, Mpango, RS, Mpairwe, H, Kinyanda, E, Edward, J and Ayikoru, T (2021). CHAKA-SONA Normative dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002434.

Greener, R, Lewis, D, Reades, J, Miles, S and Cummins, S (2021). Software and results for: An agent-based model for simulating the impact of social norms on active commuting interventions. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4916753

Tanner, KT, Sharples, LD, Daniel, RM and Keogh, RH (2021). KamTan/MediationSimulation. [Data Collection]. GitHub. https://github.com/KamTan/MediationSimulation

Kansiime, S (2021). Blood pressure levels among children in rural Uganda: results from 1,913 children in a general population survey. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002387.

Cresswell, F and Quinn, C (2021). Neurocognitive outcomes of HIV-associated tuberculous meningitis dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002372.

Gimma, A, Wong, KL, Van Xandvoort, K, Jarvis, CI and Edmunds, WJ (2021). CoMix social contact data (UK). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4905745

Tackney, MS, Cook, DG, Stahl, D, Ismail, K, Williamson, E and Carpenter, J (2021). Additional file 1 of A framework for handling missing accelerometer outcome data in trials. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14738652.v1

Anywaine, Z, Lule, SA, Hansen, C, Warimwe, G and Elliott, A (2021). Study investigating the clinical manifestations of Rift Valley fever in humans: Systematic review and meta-analysis. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002178.

O’Hara, G, Mokaya, J, Hau, J, Downs, L, Karabarinde, A, Asiki, G, McNaughton, A, Seeley, J, Matthews, P and Newton, R (2021). Liver function tests and fibrosis scores in a rural population in Africa. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.8292194.v3

Powell-Jackson, T, Kovacs, R and Borghi, J (2021). Code for: "Socioeconomic inequalities in the quality of primary care under Brazil’s national pay-for-performance programme: a longitudinal study of family health teams". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002016.

Leon, N, Namadingo, H, Bobrow, K, Cooper, S, Crampin, AC, Pauly, B, Levitt, N and Farmer, A (2021). StAR2D Patient Interview and Focus Group Guide: Formative Intervention development study. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002280.

Schmidt, W (2021). Data for: "High initial IgG antibody levels against Orientia tsutsugamushi are associated with an increased risk of severe scrub typhus infection". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001998.

NatCen Social Research, London School of Hygiene & Tropical Medicine, Russell, M and Senior, M (2021). National Survey of Sexual Attitudes and Lifestyles, 2010-2012: Biological Data: Secure Access. [Data Collection]. UK Data Service. http://doi.org/10.5255/UKDA-SN-8179-1

Russell, M, NatCen Social Research, London School of Hygiene & Tropical Medicine and Senior, M (2021). National Survey of Sexual Attitudes and Lifestyles, 2010-2012: Secure Access. [Data Collection]. UK Data Service, Colchester, Essex, United Kingdom. http://doi.org/10.5255/UKDA-SN-8178-1

Ellis, J (2020). WOR CM co-infections data file.xlsx. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.13295858.v1

Wu, L, Mwesigwa, J, Affara, M, Bah, M, Correa, S, Hall, T, Singh, SK, Beeson, JG, Tetteh, K, Kleinschmidt, I, D'Alessandro, U and Drakeley, C (2020). Additional file 2 of Sero-epidemiological evaluation of malaria transmission in The Gambia before and after mass drug administration. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.13233151.v1

Gon, G (2020). Data for "HANDS project - Hand-hygiene of Attendants for Newborn Deliveries and Survival". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001945.

Page, AE, Emmott, EH and Myers, S (2020). Testing the buffering hypothesis: breastfeeding problems, cessation and social support. [Data Collection]. OSF. https://doi.org/10.17605/OSF.IO/74ERF

Chandramohan, D, Dicko, A, Zongo, I, Sagara, I, Cairns, M, Kuepfer, I, Diarra, M, Barry, A, Tapily, A, Nikiema, F, Yerbanga, S, Coumare, S, Thera, I, Traore, A, Milligan, P, Tinto, H, Doumbo, O, Ouedraogo, J and Greenwood, B (2020). Data repository for AZ-SMC - a trial of seasonal malaria chemoprevention combined with azithromycin in African children. [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/data.00001752.

Chandramohan, D, Dicko, A, Zongo, I, Sagara, I, Cairns, M, Kuepfer, I, Diarra, M, Barry, A, Tapily, A, Nikiema, F, Yerbanga, S, Coumare, S, Thera, I, Traore, A, Milligan, P, Tinto, H, Doumbo, O, Ouedraogo, J and Greenwood, B (2020). AZ-SMC Trial - Cross-sectional dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001932.

Chandramohan, D, Dicko, A, Zongo, I, Sagara, I, Cairns, M, Kuepfer, I, Diarra, M, Barry, A, Tapily, A, Nikiema, F, Yerbanga, S, Coumare, S, Thera, I, Traore, A, Milligan, P, Tinto, H, Doumbo, O, Ouedraogo, J and Greenwood, B (2020). AZ-SMC Trial - Drug administration dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001931.

Chandramohan, D, Dicko, A, Zongo, I, Sagara, I, Cairns, M, Kuepfer, I, Diarra, M, Barry, A, Tapily, A, Nikiema, F, Yerbanga, S, Coumare, S, Thera, I, Traore, A, Milligan, P, Tinto, H, Doumbo, O and Ouedraogo, J (2020). AZ-SMC Trial - In vivo treatment efficacy dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001935.

Chandramohan, D, Dicko, A, Zongo, I, Sagara, I, Cairns, M, Kuepfer, I, Diarra, M, Barry, A, Tapily, A, Nikiema, F, Yerbanga, S, Coumare, S, Thera, I, Traore, A, Milligan, P, Tinto, H, Doumbo, O, Ouedraogo, J and Greenwood, B (2020). AZ-SMC Trial - Person-Time dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001928.

Chandramohan, D, Dicko, A, Zongo, I, Sagara, I, Cairns, M, Kuepfer, I, Diarra, M, Barry, A, Tapily, A, Nikiema, F, Yerbanga, S, Coumare, S, Thera, I, Traore, A, Milligan, P, Tinto, H, Doumbo, O, Ogobara, J and Greenwood, B (2020). AZ-SMC Trial - School child parasitaemia dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001934.

Chandramohan, D, Dicko, A, Zongo, I, Sagara, I, Cairns, M, Kuepfer, I, Diarra, M, Barry, A, Tapily, A, Nikiema, F, Yerbanga, S, Coumare, S, Thera, I, Traore, A, Milligan, P, Tinto, H, Doumbo, O, Ouedraogo, J and Greenwood, B (2020). AZ-SMC Trial - Weekly survey dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001933.

Thompson, J (2020). Comparison of small-sample standard-error corrections for generalised estimating equations in stepped wedge cluster randomised trials with a binary outcome: A simulation study. [Data Collection]. Zenodo. https://zenodo.org/10.5281/zenodo.4049828

Xu, Y, Stockdale, JE, Naidu, V, Hatherell, H, Stimson, J, Stagg, HR, Abubakar, I and Colijn, C (2020). Transmission analysis of a large TB outbreak in London: a mathematical modelling study using genomic data. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.12413012.v1

Lopez-Bernal, J, Cummins, S and Gasparrini, A (2020). gasparrini/2017_lopezbernal_IJE_codedata. [Data Collection]. GitHub. http://www.ag-myresearch.com/2017_lopezbernal_ije.html

Hutchins, H, Power, G, Ant, T, Teixeira da Silva, E, Goncalves, A, Rodrigues, A, Logan, J, Mabey, D and Last, AR (2020). Survey data on knowledge, attitudes and practices regarding Malaria and bed net usage on Bubaque Island, Guinea-Bissau. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001849.

Walker, J, Grint, D, Strongman, H, Eggo, RM, Peppa, M, Minassian, C, Mansfield, KE, Rentsch, C, Douglas, IJ, Mathur, R, Wong, A, Quint, JK, Andrews, N, Lopez-bernal, J, Scott, A, Ramsay, M, Smeeth, L and McDonald, H (2020). UK prevalence of risk factors for severe COVID-19 disease, by age and region: point prevalence estimates in 2019 and 2014, using electronic health records. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001833.

Mayhew, S and Richards, P (2020). Ebola Gbalo: Building Resilient Health Systems in post-Ebola Sierra Leone. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001830.

Gupta-Wright, A (2020). Virological failure, HIV-1 drug resistance, and early mortality in adults admitted to hospital in Malawi: an observational cohort study data set. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001824.

Candido, DS, Claro, IM, de Jesus, JG, Souza, WM, Moreira, FRR, Dellicour, S, Mellan, TA, du Plessis, L, Pereira, RHM, Sales, FCS, Manuli, ER, Thézé, J, Almeida, L, Menezes, MT, Voloch, CM, Fumagalli, MJ, Coletti, TM, da Silva, CAM, Ramundo, MS, Amorim, MR, Hoeltgebaum, HH, Mishra, S, Gill, MS, Carvalho, LM, Buss, LF, Prete, CA, Ashworth, J, Nakaya, HI, Peixoto, PS, Brady, OJ, Nicholls, SM, Tanuri, A, Rossi, Átila D., Braga, CK, Gerber, AL, de C. Guimarães, AP, Gaburo, N, Alencar, CS, Ferreira, AC, Lima, CX, Levi, JE, Granato, C, Ferreira, GM, Francisco, RS, Granja, F, Garcia, MT, Moretti, ML, Perroud, MW, Castiñeiras, Terezinha M. P. P., Lazari, CS, Hill, SC, de Souza Santos, AA, Simeoni, CL, Forato, J, Sposito, AC, Schreiber, AZ, Santos, MNN, de Sá, CZ, Souza, RP, Resende-Moreira, LC, Teixeira, MM, Hubner, J, Leme, PAF, Moreira, RG, Nogueira, ML, Ferguson, NM, Costa, SF, Proenca-Modena, JL, Vasconcelos, ATR, Bhatt, S, Lemey, P, Wu, C, Rambaut, A, Loman, NJ, Aguiar, RS, Pybus, OG, Sabino, EC and Faria, NR (2020). Data from: Evolution and epidemic spread of SARS-CoV-2 in Brazil. [Data Collection]. Dryad. http://doi.org/10.5061/dryad.rxwdbrv5z

Scortichini, M, Schneider dos santos, R, De' Donato, De Sario, M, Michelozzi, P, Davoli, M, Masselot, P, Sera, F and Gasparrini, A (2020). gasparrini/ItalyCOVIDdeath. [Data Collection]. Github. https://github.com/gasparrini/ItalyCOVIDdeath

Dziva Chikwari, C (2020). Bridging the Gap in HIV testing and care for children in Zimbabwe (B-GAP). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001798.

Russell, TW, Wu, JT, Clifford, S, CMMID COVID-19 working group, Edmunds, WJ, Kucharski, AJ and Jit, M (2020). thimotei/covid_travel_restrictions. [Data Collection]. Github. https://github.com/thimotei/covid_travel_restrictions

McCartney, D, Min, J, Richmond, R, Lu, A, Sobczyk, M, Davies, G, Broer, L, Guo, X, Jeong, A, Jung, J, Kasela, S, Katrinli, S, Kuo, P, Matias-Garcia, P, Mishra, P, Nygaard, M, Palviainen, T, Patki, A, Raffield, L, Ratliff, S, Richardson, T, Robinson, O, Sorensen, M, Sun, D, Tsai, P, van der Zee, M, Wang, X, Wang, Y, Xia, R, Xu, Z, Yao, J, Zhao, W, Deary, I, Relton, CL, Horvath, S and Marioni, R (2020). Genome-wide association studies identify 137 loci for DNA methylation biomarkers of aging. [Data Collection]. University of Edinburgh, Edinburgh, Scotland.

Tola, M, Ajibola, O, Idowu, ET, Omidiji, O, Awolola, ST and Amambua-Ngwa, A (2020). Additional file 2 of Molecular detection of drug resistant polymorphisms in Plasmodium falciparum isolates from Southwest, Nigeria. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.13152246.v1

Beale, S, Lewer, D, Aldridge, RW, Johnson, AM, Zambon, M, Hayward, A and Fragaszy, E (2020). Household Transmission of Seasonal Coronavirus Infections: Results from the Flu Watch cohort study. [Data Collection]. University College London. https://doi.org/10.5522/04/12383873.v1

Robert, A (2020). geosocial-outbreaker: Integrating geographical and social contact data to reconstruct transmission chains. [Data Collection]. Github. https://github.com/alxsrobert/o2geosocial

Keogh, R, Seaman, SR, Gran, JM and Vansteelandt, S (2020). Causal Sim code. [Data Collection]. Github. https://github.com/ruthkeogh/causal_sim

Fielding, K (2019). TB Fast Track dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001531.

Carreira, H and Funston, G (2019). Code lists for: "Risk of adverse mental health outcomes in women with history of breast cancer: a matched population-based cohort study in the United Kingdom (1988-2018)". [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom, London, United Kingdom. https://doi.org/10.17037/DATA.00001429

Carreira, H and Funston, G (2019). Clinical Codelist - Anxiety Symptoms and Diagnoses. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001397.

Carreira, H and Funston, G (2019). Clinical Codelist - Breast Cancer Diagnoses. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001396.

Carreira, H and Funston, G (2019). Clinical Codelist - Cognitive Dysfunction (symptoms and diagnoses). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001417.

Carreira, H and Funston, G (2019). Clinical Codelist - Depression (symptoms and diagnoses). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001400.

Carreira, H and Funston, G (2019). Clinical Codelist - Fatigue (symptoms and diagnoses). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001419.

Carreira, H and Funston, G (2019). Clinical Codelist - Fatigue Syndrome. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001420.

Carreira, H and Funston, G (2019). Clinical Codelist - Female Sexual Dysfunction (symptoms and diagnoses). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001426.

Carreira, H and Funston, G (2019). Clinical Codelist - Pain (broad definition). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001423.

Carreira, H and Funston, G (2019). Clinical Codelist - Selected Anxiety Disorders. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001398.

Carreira, H and Funston, G (2019). Clinical Codelist - Selected Depressive Disorders. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001401.

Carreira, H and Funston, G (2019). Clinical Codelist - Selected Sexual Disorders. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001427.

Carreira, H and Funston, G (2019). Clinical Codelist - Self-harm. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001428.

Carreira, H and Funston, G (2019). Clinical Codelist - Sleep Disorder (symptoms and diagnoses). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001421.

Carreira, H and Funston, G (2019). Therapy Codelist - Antidepressants. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001402.

Carreira, H and Funston, G (2019). Therapy Codelist - Anxiety Drugs. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001399.

Carreira, H and Funston, G (2019). Therapy Codelist - Dementia. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001418.

Carreira, H and Funston, G (2019). Therapy Codelist - Hypnotics. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001422.

Carreira, H and Funston, G (2019). Therapy Codelist - Opioids. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001424.

Carreira, H and Funston, G (2019). Therapy Codelist - Opioids excluding Codeine. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001425.

Kumar, N, Browne, HP, Viciani, E, Forster, SC, Clare, S, Harcourt, K, Stares, MD, Dougan, G, Fairley, DJ, Roberts, P, Pirmohamed, M, Clokie, MRJ, Jensen, MBF, Hargreaves, KR, Ip, M, Wieler, LH, Seyboldt, C, Norén, T, Riley, TV, Kuijper, EJ, Wren, BW and Lawley, TD (2019). Adaptation of host transmission cycle during Clostridium difficile speciation. [Data Collection]. Nature Genetics. https://doi.org/10.1038/s41588-019-0478-8

Phelan, J, O’Sullivan, DM, Machado, D, Ramos, J, Oppong, YE, Campino, S, O’Grady, J, McNerney, R, Hibberd, ML, Viveiros, M, Huggett, JF and Clark, TG (2019). Additional file 1: of Integrating informatics tools and portable sequencing technology for rapid detection of resistance to anti-tuberculous drugs. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.8318861.v1

Georgiadou, A, Lee, HJ, Walther, M, van Beek, AE, Fitriani, F, Wouters, D, Kuijpers, TW, Nwakanma, D, D'Alessandro, U, Riley, E, Otto, TD, Ghani, A, Levin, M, Coin, LJ, Conway, DJ, Bretscher, MT and Cunnington, AJ (2019). Modelling pathogen load dynamics to elucidate mechanistic determinants of host–Plasmodium falciparum interactions. [Data Collection]. Nature Microbiology. https://doi.org/10.1038/s41564-019-0474-x

Knuepfer, E, Wright, KE, Kumar Prajapati, S, Rawlinson, TA, Mohring, F, Koch, M, Lyth, OR, Howell, SA, Villasis, E, Snijders, AP, Moon, RW, Draper, SJ, Rosanas-urgell, A, Higgins, MK, Baum, J and Holder, AA (2019). Divergent roles for the RH5 complex components, CyRPA and RIPR in human-infective malaria parasites. [Data Collection]. PLOS Pathogens. https://doi.org/10.1371/journal.ppat.1007809

Ashton, P, Thanh, L, Trieu, P, Van Anh, D, Trinh, N, Beardsley, J, Kibengo, F, Chierakul, W, Dance, D, Rattanavong, S, Davong, V, Hung, L, Chau, N, Tung, N, Chan, A, Thwaites, G, Lalloo, D, Anscombe, C, Nhat, L, Perfect, J, Dougan, G, Baker, S, Harris, S and Day, J (2019). Three phylogenetic groups have driven the recent population expansion of Cryptococcus neoformans. [Data Collection]. Nature Communications. https://doi.org/10.1038/s41467-019-10092-5

Keogh, R (2019). An online survey of adults with cystic fibrosis: accessing and using life expectancy information. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001077.

Nsamba, J, Lule, SA, Namara, B, Zziwa, C, Akurut, H, Lubyayi, L, Akello, F, Tumusiime, J, Elliott, AM and Webb, EL (2019). BP_Body_Comp. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.7775669.v1

Gupta-Wright, A (2019). Mortality predictor score in hospitalised patients HIV-associated TB in Africa dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001026.

Boinett, CJ, Cain, AK, Hawkey, J, Do Hoang, NT, Khanh, NNT, Thanh, DP, Dordel, J, Campbell, JI, Lan, NPH, Mayho, M, Langridge, GC, Hadfield, J, Chau, NVV, Thwaites, GE, Parkhill, J, Thomson, NR, Holt, KE and Baker, S (2019). Clinical and laboratory-induced colistin-resistance mechanisms in Acinetobacter baumannii. [Data Collection]. Microbial genomics. https://doi.org/10.1099/mgen.0.000246

Jombart, T, Campbell, F and Fitzjohn, R (2018). outbreaker2: Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data. [Data Collection]. The Comprehensive R Archive Network. https://CRAN.R-project.org/package=outbreaker2

Anywaine, Z, Levin, J, Abaasa, A, Nunn, A, Grosskurth, H and Munderi, P (2018). Safety of discontinuing cotrimoxazole prophylaxis among HIV infected adults stabilized on ART in Uganda: randomised controlled trial. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000917.

Bandason, T, Dauya, E, Dakshina, S, McHugh, G, Chonzi, P, Munyati, S, Weiss, HA, Simms, V, Kranzer, K and Ferrand, RA (2018). Screening tool to identify adolescents living with HIV in a community setting in Zimbabwe: A validation study. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0204891.s001.

Schmidt, W (2018). Hospitalisations and outpatient visits for undifferentiated fever attributable to scrub typhus in rural south india: retrospective cohort and nested case-control study. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001025.

Sobkowiak, B, Glynn, JR, Houben, Rein M. G. J., Mallard, K, Phelan, JE, Guerra-Assunção, JA, Banda, L, Mzembe, T, Viveiros, M, McNerney, R, Parkhill, J, Crampin, AC and Clark, TG (2018). Additional file 1: of Identifying mixed Mycobacterium tuberculosis infections from whole genome sequence data. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.6968636.v1

Kucharski, AJ, Wenham, C, Brownlee, P, Racon, L, Widmer, N, Eames, KTD and Conlan, AJK (2018). Reported contacts dataset for "Structure and consistency of self-reported social contact networks in British secondary schools". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.1371/journal.pone.0200090.s002

Cox, S, Makani, J, Lee, N and Sangeda, R (2018). Dataset for: Hepcidin in Tanzanian children with sickle cell disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000781.

Kuteesa, MO, Weiss, H, Abaasa, A, Nsubuga, RN, Newton, R, Seeley, J and Kamali, A (2018). HIV Combination Prevention study - Data at months 0, 9 and 15. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000722.

Keogh, R (2018). MI-TVE. [Data Collection]. Github. https://github.com/ruthkeogh/MI-TVE

Farmer, R and Douglas, IJ (2018). Clinical code list - Alcohol. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000717.

Bhaskaran, K and Farmer, R (2018). Clinical code list - Cancer. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000716.

Farmer, R (2018). Clinical code list - Cardiovascular disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000719.

Farmer, R (2018). Clinical code list - Chronic kidney disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000718.

Eastwood, SV, Mathur, R and Farmer, R (2018). Clinical code list - Diabetes care related codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000721.

Eastwood, SV, Mathur, R and Farmer, R (2018). Clinical code list - Diabetes diagnoses. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000720.

Farmer, R, Bhaskaran, K, Eastwood, SV and Mathur, R (2018). Clinical code lists for: "Metformin use and risk of cancer in patients with type 2 diabetes: A cohort study of primary care records using inverse probability weighting of marginal structural models". [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000667.

Keogh, R (2018). MI-CC. [Data Collection]. Github. https://github.com/ruthkeogh/MI-CC

Herman, LS, Fornace, K, Phelan, J, Grigg, MJ, Anstey, NM, William, T, Moon, RW, Blackman, MJ, Drakeley, CJ and Tetteh, KKA (2018). Identification and validation of a novel panel of Plasmodium knowlesi biomarkers of serological exposure. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0006457

Jombart, T, Kendall, M, Almagro-Garcia, J and Colijn, C (2018). treespace: exploration of landscapes of phylogenetic trees. [Data Collection]. Github. https://thibautjombart.github.io/treespace/

Sepúlveda, N, Phelan, J, Diez-Benavente, E, Campino, S, Clark, TG, Hopkins, H, Sutherland, C, Drakeley, CJ and Beshir, KB (2018). Global analysis of Plasmodium falciparum histidine-rich protein-2 ( pfhrp2 ) and pfhrp3 gene deletions using whole-genome sequencing data and meta-analysis. [Data Collection]. Infection, Genetics and Evolution. https://doi.org/10.1016/j.meegid.2018.04.039

Kelly, C, Dube, A and Mortimer, K (2018). Data for: "From kitchen to classroom: Assessing the impact of cleaner burning biomass-fuelled cookstoves on primary school attendance in Karonga district, northern Malawi". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.282.

Svefors, P, Selling, KE, Shaheen, R, Khan, AI, Persson, LA and Lindholm, L (2018). Anonymised study dataset for: "Cost-effectiveness of prenatal food and micronutrient interventions on under-five mortality and stunting: Analysis of data from the MINIMat randomized trial, Bangladesh". [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0191260.s002

Currier, RB, Cooper, A, Burrell-saward, H, MacLeod, A and Alsford, S (2018). Decoding the network of Trypanosoma brucei proteins that determines sensitivity to apolipoprotein-L1. [Data Collection]. Figshare. https://doi.org/10.1371/journal.ppat.1006855

Weiss, H, Nakinyingi-Miiro, J and Sembajjwe, W (2018). Data for: "Menstrual health and school absenteeism among adolescent girls in Uganda (MENISCUS): feasibility study". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.275.

Weiss, H (2018). Menstrual Hygiene and Safe Male Circumcision Promotion in Ugandan Schools (MENISCUS). [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom, London, United Kingdom. https://doi.org/10.17037/DATA.274.

Burr, SE, Camara, B, Oluwalana, C, Bojang, E, Bottomley, C, Bojang, A, Bailey, RL, D'Alessandro, U and Roca, A (2017). Data for: "Does azithromycin given to women in labour decrease ocular bacterial infection in neonates? A double-blind, randomized trial". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000626.

Watson, CH, Coriakula, J, Ngoc, DTT, Flasche, S, Kucharski, AJ, Lau, CL, Thieu, NTV, le Polain de Waroux, O, Rawalai, K, Van, TT, Taufa, M, Baker, S, Nilles, EJ, Kama, M and Edmunds, WJ (2017). Social mixing in Fiji: Who-eats-with-whom contact patterns and the implications of age and ethnic heterogeneity for disease dynamics in the Pacific Islands. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0186911

Lopez-Bernal, J, Lu, CY, Gasparrini, A, Cummins, S, Wharham, JF and Soumerai, SB (2017). Association between the 2012 Health and Social Care Act and specialist visits and hospitalisations in England: A controlled interrupted time series analysis. [Data Collection]. PLOS Medicine. https://doi.org/10.1371/journal.pmed.1002427

Mccreesh, N (2017). Model code for "An explanation for the low proportion of tuberculosis that results from transmission between household and known social contacts". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.283.

Falconer, J (2017). Search strategies for "Evidence for the use of administrative controls to reduce the transmission of Mycobacterium tuberculosis in healthcare settings: a systematic review". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001020.

Sanya, RE, Tumwesige, E, Elliott, AM and Seeley, J (2017). Perceptions about interventions to control schistosomiasis among the Lake Victoria island communities of Koome, Uganda. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0005982

van Kleef, E, Luangasanatip, N, Bonten, MJ and Cooper, BS (2017). R code: why sensitive bacteria are resistant to hospital infection control. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.1045530

Diez Benavente, E, Florez de Sessions, P, Moon, RW, Holder, AA, Blackman, MJ, Roper, C, Drakeley, CJ, Pain, A, Sutherland, CJ, Hibberd, ML, Campino, S and Clark, TG (2017). Analysis of nuclear and organellar genomes of Plasmodium knowlesi in humans reveals ancient population structure and recent recombination among host-specific subpopulations. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pgen.1007008

Weiss, H, Nakinyingi-Miiro, J, Sembajjwe, W and Gibson, L (2017). MENISCUS SMC dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.208.

Ruis, C, Roy, S, Brown, JR, Allen, DJ, Goldstein, RA and Breuer, J (2017). The emerging GII.P16-GII.4 Sydney 2012 norovirus lineage is circulating worldwide, arose by late-2014 and contains polymerase changes that may increase virus transmission. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0179572

Greenwood, B, Greenwood, A and Bradley, A (2017). Data from a study of Guinea worm infection in northern Nigeria, 1971-1974. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.134.

Elmes, J, Skovdal, M, Nhongo, K, Ward, H, Campbell, C, Hallett, TB, Nyamukapa, C, White, PJ and Gregson, S (2017). Selected interview transcript quotes from: "A reconfiguration of the sex trade: How social and structural changes in eastern Zimbabwe left women involved in sex work and transactional sex more vulnerable". [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0171916.s001

Andreu, N, Phelan, J, de Sessions, PF, Cliff, JM, Clark, T and Hibberd, M (2017). Primary macrophages and J774 cells respond differently to infection with Mycobacterium tuberculosis. [Data Collection]. Gene Expression Omnibus. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE88801

Gasparrini, A and Leone, M (2017). gasparrini/2014_gasparrini_BMCmrm_Rcodedata. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://github.com/gasparrini/2014_gasparrini_BMCmrm_Rcodedata

Gasparrini, A, Scheipl, F, Armstrong, B and Kenward, M (2017). R code and data for: "A penalized framework for distributed lag non-linear models". [Data Collection]. Github. https://github.com/gasparrini/2017_gasparrini_Biomet_Rcodedata

Angkurawaranon, C, Nitsch, D, Larke, N, Rehman, AM, Smeeth, L and Addo, J (2016). Ecological Study of HIV Infection and Hypertension in Sub-Saharan Africa: Is There a Double Burden of Disease? [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0166375.

Pradeilles, R, Rousham, EK, Norris, SA, Kesten, JM and Griffiths, PL (2016). Collection tools for: "Community readiness for adolescents’ overweight and obesity prevention is low in urban South Africa: a case study". [Data Collection].

Ansari, HR, Templeton, TJ, Subudhi, AK, Ramaprasad, A, Tang, J, Lu, F, Naeem, R, Hashish, Y, Oguike, MC, Benavente, ED, Clark, TG, Sutherland, CJ, Barnwell, JW, Culleton, R, Cao, J and Pain, A (2016). Genome-scale comparison of expanded gene families in Plasmodium ovale wallikeri and Plasmodium ovale curtisi with Plasmodium malariae and with other Plasmodium species. [Data Collection]. International Journal for Parasitology. https://doi.org/10.1016/j.ijpara.2016.05.009.

Mason, DS, Marks, M, Sokana, O, Solomon, AW, Mabey, DC, Romani, L, Kaldor, J, Steer, AC and Engelman, D (2016). The Prevalence of Scabies and Impetigo in the Solomon Islands: A Population-Based Survey. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0004803.s002

Tientcheu, L, Haks, MC, Agbla, S, Sutherland, J, Adetifa, I, Donkor, S, Quinten, E, Daramy, M, Antonio, M, Kampmann, B, Ottenhoff, THM, Dockrell, H and Ota, MO (2016). Host Immune Responses Differ between M. africanum- and M. tuberculosis-Infected Patients following Standard Anti-tuberculosis Treatment. [Data Collection]. PLoS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0004701

Kucharski, AJ, Funk, S, Eggo, RM, Mallet, H, Edmunds, WJ and Nilles, EJ (2016). S1 Dataset for "Transmission Dynamics of Zika Virus in Island Populations: A Modelling Analysis of the 2013–14 French Polynesia Outbreak". [Data Collection]. PLoS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0004726.s016

Mansour, NR, Paveley, R, Gardner, JMF, Bell, AS, Parkinson, T and Bickle, Q (2016). High Throughput Screening Identifies Novel Lead Compounds with Activity against Larval, Juvenile and Adult Schistosoma mansoni. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pntd.0004659.

Diaz-ordaz, K, Kenward, M, Gomes, M and Grieve, R (2016). Multiple imputation methods for bivariate outcomes in cluster randomised trials: Supporting Information. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.99.

Chotirmall, SH, Rothnie, K, Müllerová, H, Hurst, JR, Smeeth, L, Davis, K, Thomas, SL and Quint, J (2016). Validation of the Recording of Acute Exacerbations of COPD in UK Primary Care Electronic Healthcare Records. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0151357

Carpenter, DO, Svefors, P, Rahman, A, Ekström, E, Khan, AI, Lindström, E, Persson, LA and Ekholm Selling, K (2016). MINIMat data. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0149700.s004

Tsuboi, T, Grigg, M, Barber, BE, Marfurt, J, Imwong, M, William, T, Bird, E, Piera, KA, Aziz, A, Boonyuen, U, Drakeley, C, Cox, J, White, NJ, Cheng, Q, Yeo, TW, Auburn, S and Anstey, NM (2016). P. knowlesi DHFR sequence data. [Data Collection]. PLoS One. https://doi.org/10.1371/journal.pone.0149519.s001

Wang, X, Zheng, D, Arima, H, Sato, S, Gasparrini, A, Heeley, E, Delcourt, C, Lo, S, Huang, Y, Wang, J, Stapf, C, Robinson, T, Lavados, P, Chalmers, J and Anderson, CS (2016). Low Ambient Temperature and Intracerebral Hemorrhage: The INTERACT2 Study. S1 Table. [Data Collection]. PLoS One. https://doi.org/10.1371/journal.pone.0149040.s004

Phelan, JE, Coll, F, Bergval, I, Anthony, RM, Warren, R, Sampson, SL, Gey van Pittius, NC, Glynn, JR, Crampin, AC, Alves, A, Bessa, TB, Campino, S, Dheda, K, Grandjean, L, Hasan, R, Hasan, Z, Miranda, A, Moore, D, Panaiotov, S, Perdigao, J, Portugal, I, Sheen, P, de Oliveira Sousa, E, Streicher, EM, van Helden, PD, Viveiros, M, Hibberd, ML, Pain, A, Mcnerney, R and Clark, TG (2016). Data for: "Recombination in pe/ppe genes contributes to genetic variation in Mycobacterium tuberculosis lineages". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Kretzschmar, MEE, Tosas Auguet, O, Betley, JR, Stabler, R, Patel, A, Ioannou, A, Marbach, H, Hearn, P, Aryee, A, Goldenberg, SD, Otter, JA, Desai, N, Karadag, T, Grundy, C, Gaunt, M, Cooper, BS, Edgeworth, JD and Kypraios, T (2016). Evidence for Community Transmission of Community-Associated but Not Health-Care-Associated Methicillin-Resistant Staphylococcus Aureus Strains Linked to Social and Material Deprivation: Spatial Analysis of Cross-sectional Data. [Data Collection]. PLOS Medicine. https://doi.org/10.1371/journal.pmed.1001944.s005

Karkey, A, Jombart, T, Walker, AW, Thompson, CN, Torres, A, Dongol, S, Tran Vu Thieu, N, Pham Thanh, D, Tran Thi Ngoc, D, Voong Vinh, P, Singer, AC, Parkhill, J, Thwaites, G, Basnyat, B, Ferguson, N and Baker, S (2016). The Ecological Dynamics of Fecal Contamination and Salmonella Typhi and Salmonella Paratyphi A in Municipal Kathmandu Drinking Water. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0004346

Houlihan, C, Baisley, K, Bravo, IG, Kapiga, S, de Sanjosé, S, Changalucha, J, Ross, D, Hayes, R and Watson-jones, D (2015). The Incidence of Human Papillomavirus in Tanzanian Adolescent Girls Before Reported Sexual Debut. [Data Collection]. The Journal of adolescent health. https://doi.org/10.1016/j.jadohealth.2015.10.248.

Francis, SC, Hou, Y, Baisley, K, Van de wijgert, J, Watson-Jones, D, Ao, TT, Herrera, C, Maganja, K, Andreasen, A, Coulton, GR, Hayes, RJ and Shattock, RJ (2015). Data for: "Immune activation in the female genital tract: Expression profiles of soluble proteins in women at high risk for HIV infection". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.104.

Kerkhoff, AD, Lawn, S, Schutz, C, Burton, R, Boulle, A, Cobelens, FJ and Meintjes, G (2015). Data for: "Anemia, Blood Transfusion Requirements and Mortality Risk in Human Immunodeficiency Virus-Infected Adults Requiring Acute Medical Admission to Hospital in South Africa". [Data Collection]. Oxford University Press. https://doi.org/10.1093/ofid/ofv173

Nnko, S, Bukenya, D, Kavishe, BB, Biraro, S, Peck, R, Kapiga, S, Grosskurth, H and Seeley, J (2015). Chronic Diseases in North-West Tanzania and Southern Uganda. Public Perceptions of Terminologies, Aetiologies, Symptoms and Preferred Management. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0142194

Phelan, J, Coll, F, Mcnerney, R, Ascher, DB, Pires, DEV, Furnham, N, Coeck, N, Hill-Cawthorne, GA, Nair, MB, Mallard, K, Ramsay, A, Campino, S, Hibberd, M, Pain, A, Rigouts, L and Clark, T (2015). Whole genome sequences for M.tuberculosis isolates from the TDR strain bank. [Data Collection]. European Nucleotide Archive. http://www.ebi.ac.uk/ena/data/view/PRJEB11653

Zoltner, M, Leung, KF, Alsford, S, Horn, D and Field, MC (2015). Modulation of the Surface Proteome through Multiple Ubiquitylation Pathways in African Trypanosomes: Supporting Information. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.16.

Johnson, A (2015). National Survey of Sexual Attitudes and Lifestyles, 2010-2012. [Data Collection]. UK Data Service, Essex, United Kingdom. http://doi.org/10.5255/UKDA-SN-7799-2

Silver, M, Corbin, KD, Hellenthal, G, da Costa, K, Dominguez-salas, P, Moore, S, Owen, J, Prentice, A, Hennig, B and Zeisel, SH (2015). Evidence for negative selection of gene variants that increase dependence on dietary choline in a Gambian cohort: Supplemental Data. [Data Collection]. The FASEB Journal. https://doi.org/10.1096/fj.15-271056.

Goodman, A, van Sluijs, EM and Ogilvie, D (2015). Cycle training for children: Which schools offer it and who takes part? [Data Collection]. Journal of Transport & Health. https://doi.org/10.1016/j.jth.2015.07.002.

Brauer, R, Bhaskaran, K, Chaturvedi, N, Dexter, DT, Smeeth, L and Douglas, I (2015). Glitazone Treatment and Incidence of Parkinson’s Disease among People with Diabetes: A Retrospective Cohort Study. [Data Collection]. PLOS Medicine. https://doi.org/10.1371/journal.pmed.1001854

Kucharski, A, Conlan, AJK and Eames, K (2015). School's Out: Seasonal Variation in the Movement Patterns of School Children. S1 Dataset. Reported individual travel patterns. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0128070.s004

Cairns, M, Woukeu, A and Tagbor, H (2015). Screening and treatment of malaria in pregnancy in West Africa. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.2.

Benavente, E, Coll, F, Furnham, N, Mcnerney, R, Glynn, J, Campino, S, Pain, A, Mohareb, FR and Clark, T (2015). PhyloTrack. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.82.

Mobegi, V, Duffy, C, Amambua-Ngwa, A, Loua, KM, Laman, E, Nwakanma, DC, MacInnis, B, Aspeling-jones, H, Murray, L, Clark, T, Kwiatkowski, DP and Conway, D (2015). Genome-wide analysis of selection on the malaria parasite Plasmodium falciparum in West African populations of differing infection endemicity: Supplementary data. [Data Collection]. Molecular Biology and Evolution, Oxford Journals. https://doi.org/10.1093/molbev/msu106

Kucharski, A, Mills, H, Pinsent, A, Fraser, C, Kerkhove, MV and Riley, S (2015). Data from: Distinguishing between reservoir exposure and human-to-human transmission for emerging pathogens using case onset data. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.2g43n

Ghinai, R, El-Duah, P, Chi, K, Pillay, A, Solomon, AW, Bailey, R, Agana, N, Mabey, D, Chen, C, Adu-Sarkodie, Y and Marks, M (2015). A Cross-Sectional Study of ‘Yaws’ in Districts of Ghana Which Have Previously Undertaken Azithromycin Mass Drug Administration for Trachoma Control. Study dataset. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pntd.0003496.s002

Reuter, S, Török, ME, Holden, MT, Reynolds, R, Raven, KE, Blane, B, Donker, T, Bentley, SD, Aanensen, DM, Grundmann, H, Feil, EJ, Spratt, BG, Parkhill, J and Peacock, S (2015). Staphylococcus Aureus BSAC study data. [Data Collection]. European Nucleotide Archive. http://www.ebi.ac.uk/ena/data/view/ERP001012

Claessens, A, Hamilton, WL, Kekre, M, Otto, TD, Faizullabhoy, A, Rayner, JC and Kwiatkowski, D (2014). Generation of Antigenic Diversity in Plasmodium falciparum by Structured Rearrangement of Var Genes During Mitosis. [Data Collection]. PLOS Genetics. https://doi.org/10.1371/journal.pmed.1001893p://dx.doi.org/10.1371/journal.pmed.1001893

Camacho, A, Kucharski, A, Funk, S, Breman, J, Piot, P and Edmunds, J (2014). Potential for large outbreaks of Ebola virus disease: Supplementary Data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.27.

Gómez-Olivé, FX, Thorogood, M, Bocquier, P, Mee, P, Kahn, K, Berkman, L and Tollman, S (2014). Social conditions and disability related to the mortality of older people in rural South Africa: Supplementary Data. [Data Collection]. Oxford University Press. https://doi.org/10.1093/ije/dyu093

Jombart, T, Cori, A, Didelot, X, Cauchemez, S, Fraser, C and Ferguson, N (2014). Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data. [Data Collection]. PLOS Computational Biology. https://doi.org/10.1371/journal.pcbi.1003457

Bronowski, C, Fookes, MC, Gilderthorp, R, Ashelford, KE, Harris, SR, Phiri, A, Hall, N, Gordon, MA, Wain, J, Hart, CA, Wigley, P, Thomson, NR and Winstanley, C (2013). Genomic Characterisation of Invasive Non-Typhoidal Salmonella enterica Subspecies enterica Serovar Bovismorbificans Isolates from Malawi. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0002557

Sheehy, SH, Duncan, CJA, Elias, SC, Biswas, S, Collins, KA, O'hara, G, Halstead, FD, Ewer, KJ, Mahungu, T, Spencer, AJ, Miura, K, Poulton, ID, Dicks, MDJ, Edwards, NJ, Berrie, E, Moyle, S, Colloca, S, Cortese, R, Gantlett, K, Long, CA, Lawrie, AM, Gilbert, SC, Doherty, T, Nicosia, A, Hill, AVS and Draper, SJ (2012). Phase Ia clinical evaluation of the safety and immunogenicity of the Plasmodium falciparum blood-stage antigen AMA1 in ChAd63 and MVA vaccine vectors. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.24.

Breeze, E, Wilkinson, P, Fletcher, A, Bulpitt, C, Jones, D and Tulloch, A (2006). Quality of Life among People Aged 75 and over in Great Britain, 1994-1998. [Data Collection]. UK Data Service, Essex, United Kingdom. https://doi.org/10.5255/UKDA-SN-4449-1

CRASH Trial Collaborators (2005). CRASH - Corticosteroid Randomisation after Significant Head Injury. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.11.