A

Abbott, S (2023). seabbs/badtobetter: Initial release. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7799448

Abbott, S, Hellewell, J, Lucas, T, Funk, S and Gimma, A (2023). epiforecasts/ringbp. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.3749529

Abbott, S, Russell, TW, Hellewell, J and Kucharski, AJ (2023). thimotei/legacy_ct_modelling: Final version. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10223417

Abdurahman, O, Last, A, Macleod, D, Habtamu, E, Versteeg, B, Greenland, K, Burton, MJ, Dumessa, G, Guye, M, Nure, R, Adugna, D and Miecha, H (2023). Data for risk factor survey of active trachoma in the Oromia region of Ethiopia. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003653.

Abouyannis, M, Boga, M, Amadi, D, Ouma, N, Nyaguara, A, Mturi, N, Berkley, JA, Adetifa, IMO, Casewell, NR, Lalloo, DG and Hamaluba, M (2023). The de-identified final dataset for the study population. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0010987.s002

Abramsky, T, Harvey, S, Lees, S, Kapiga, S, Mtolela, G, Madaha, F, Hanson, C, Hashim, R and Kapinga, I (2023). MAISHA Study CRT01: Baseline and follow-up data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003591.

Abramsky, T, Harvey, S, Lees, S, Kapiga, S, Mtolela, G, Madaha, F, Hanson, C, Hashim, R and Kapinga, I (2023). MAISHA Study CRT02: Baseline and follow-up data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003592.

Adamson, AJ, Kallis, C, Douglas, IJ and Quint, JK (2023). Additional file 1 of Accuracy of the recording of pneumonia events in English electronic healthcare record data in patients with chronic obstructive pulmonary disease. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.26697608.v1

Adeyemi, OO, Ndodo, ND, Sulaiman, MK, Ayansola, OT, Buhari, OIN, Akanbi, OA, Bolarinwa, OA, Chukwu, C, Joel, IY, Omoare, AA, Wahab, KW, Obiekea, C, Buhari, MO, Ahumibe, A, Kolawole, CF, Okoi, C, Omotesho, OB, Mba, N, Adeniyi, O, Babatunde, O, Akintunde, N, Ayinla, G, Akande, OW, Odunola, RA, Saka, MJ, Musa, OI, Durotoye, IA, Ihekweazu, C, Adetifa, IM and Fadeyi, A (2023). SARS-CoV-2 variants-associated outbreaks of COVID-19 in a tertiary institution, North-Central Nigeria: Implications for epidemic control. S1 Data. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0280756.s003

Aiken, A and Rehman, AM (2023). MBIRA - Mortality from Bacterial Infections Resistant to Antibiotics study - underlying data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003168.

Al Ashwal, S (2023). Rapid Assessment of Avoidable Blindness Dataset: Qatar (2023). [Data Collection]. London School of Hygiene & Tropical Medicine RAAB Repository. https://doi.org/10.17037/RAABDATASET.e710bcd2-a7dd-45e0-a993-ff2cf39c2f04.

Al-haboubi, M, Exley, J, Allel, K, Erens, B and Mays, N (2023). One year of digital contact tracing: Who was more likely to install the NHS COVID-19 app? Results from a tracker survey in England and Wales. [Data Collection]. SAGE Journals. https://doi.org/10.25384/SAGE.c.6449597.v1

Ambia, J, Slaymaker, E, Khagayi, S, Kwaro, D and Reniers, G (2023). Data for: Antenatal versus general population HIV prevalence in Siaya, Western Kenya. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003316.

Amofa-Sekyi, M and Schaap, A (2023). Dataset for: "Prevalence and risk factors of M. Tuberculosis Infection in young people across 14 communities in Zambia and South Africa". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003627.

Andrade, LR, Santana, Mônica Leila Portela de, Costa, PRF, Assis, AMO and Kinra, S (2023). Body image is associated with anthropometric status in adolescents, but not with lifestyle. [Data Collection]. SciELO journals. https://doi.org/10.6084/m9.figshare.21835206.v1

Andresen, K, Carreira, H, Strongman, H, Mcdonald, HI, Benitez-Majano, S, Mansfield, KE, Nitsch, D, Tomlinson, LA and Bhaskaran, K (2023). Additional file 1 of The risk of acute kidney injury in colorectal cancer survivors: an english population-based matched cohort study. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.24104323.v1

Ashall, J, Shah, S, Biggs, JR, Chang, JR, Jafari, Y, Brady, OJ, Mai, HK, Lien, LT, Do Thai, H, Nguyen, HAT, Anh, DD, Iwasaki, C, Kitamura, N, Van Loock, M, Herrera-Taracena, G, Rasschaert, F, Van Wesenbeeck, L, Yoshida, L, Hafalla, JCR, Hue, S and Hibberd, ML (2023). Dengue virus type 4 isolate DET-P-0428-1 polyprotein (POLY) gene, complete cds; and sfRNA2 lncRNA gene, partial sequence. [Data Collection]. National Center for Biotechnology Information. https://www.ncbi.nlm.nih.gov/nuccore/OQ427062

Ashall, J, Shah, S, Biggs, JR, Chang, JR, Jafari, Y, Brady, OJ, Mai, HK, Lien, LT, Do Thai, H, Nguyen, HAT, Anh, DD, Iwasaki, C, Kitamura, N, Van Loock, M, Herrera-Taracena, G, Rasschaert, F, Van Wesenbeeck, L, Yoshida, L, Hafalla, JCR, Hue, S and Hibberd, ML (2023). Dengue virus type I isolate DEN-P-1098-1 polyprotein (POLY) gene, partial cds. [Data Collection]. National Center for Biotechnology Information. https://www.ncbi.nlm.nih.gov/nuccore/OQ426566.1/

B

Banda, GT, Bosire, E, Chandler, CI, Dixon, J, Ferrand, RA, Limbani, F, Mendenhall, E, Morton, B, Salimu, S, Simiyu, IG, Spencer, SA and Yongolo, NM (2023). Multimorbidity Research in Sub-Saharan Africa: An Interdisciplinary Workshop: Source Materials and Supporting Documents. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/YVO7SW

Banke-Thomas, A, Olubodun, T, Macharia, PM, Wong, KL, Gwacham-Anisiobi, U, Ogunyemi, O, Benova, L, Omolade Abejirinde, I, Makanga, PT, Wang, J, Stanton, C, Sundararajan, N, Shah, Y, Prasad, G, Kansal, M, Vispute, S, Shekel, T and Afolabi, BB (2023). A geospatial database of close to reality travel times to obstetric emergency care in 15 Nigerian conurbations. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.22699759.v1

Berridge, V, Babor, TF, Hall, W, Macgregor, S and McCarty, D (2023). Addiction Lives - interview transcripts and summaries. [Data Collection]. Wiley.

Bhaskaran, K (2023). Clinical codelist - Smoking - Aurum. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003472.

Bhaskaran, K (2023). Clinical codelist - Smoking - gold. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003473.

Bhaskaran, K and Carreira, H (2023). Clinical codelist - cancer - gold. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003427.

Blom, I (2023). Annexes to: A Systematic Review to Identify the Effectiveness of Greenhouse Gas Mitigation Interventions for Healthcare Systems in Low- and Middle-Income Countries. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003678.

Bolt, H (2023). ehr-lshtm/acute_kidney_injury_seasonality_ML. [Data Collection]. GitHub. https://github.com/ehr-lshtm/acute_kidney_injury_seasonality_ML

Bonell, A, Badjie, J, Sonko, B, Prentice, AM, Haines, A, Maxwell, N, Hirst, J and Vicedo-cabrera, AM (2023). Dataset from an observational cohort study of heat stress in pregnant farmers in The Gambia. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003390.

Bosse, NI, Abbott, S, Bracher, J, Van leeuwen, E, Cori, A and Funk, S (2023). Data for "Human judgement forecasting of COVID-19 in the UK" by Bosse et. al (2023). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7897288

Bosse, N, Bracher, J, Abbott, S and Funk, S (2023). epiforecasts/transformation-forecast-evaluation. [Data Collection]. Github. https://github.com/epiforecasts/transformation-forecast-evaluation

Bradley, E (2023). VN Types Bayesian Modelling. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001611.

Bradley, E and Lopez, G (2023). WorldHealthOrganization/mca-pretermbirths-analysis. [Data Collection]. Github. https://github.com/WorldHealthOrganization/mca-pretermbirths-analysis

Bresser, M, Erhardt, R, Shanaube, K, Simwinga, M, Mahlatsi, P, Belus, J, Schaap, A, Amstutz, A, Gachie, T, Glass, T, Kangolo, B, Mota, M, Floyd, S, Katende, B, Klinkenberg, E, Ayles, H, Reither, K and Ruperez, M (2023). Evaluation of COVID-19 antigen rapid diagnostic tests for self-testing in Lesotho and Zambia - Lesotho data. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.8429840

Bresser, M, Erhardt,, R, Shanaube, K, Simwinga, M, Mahlatsi, P, Belus, J, Schaap, A, Amstutz, A, Gachie, T, Glass, T, Kangolo, B, Mota, M, Floyd, S, Katende, B, Klinkenberg, E, Ayles, H, Reither, K and Ruperez, M (2023). Evaluation of COVID-19 antigen rapid diagnostic tests for self-testing in Lesotho and Zambia - Zambia data. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.8426699

Brown, J, Wing, K and Douglas, IJ (2023). Clinical covariate codelist - Aurum. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003265.

Brown, J, Wing, K and Douglas, IJ (2023). Clinical covariate codelist - GOLD. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003266.

Brown, J, Wing, K and Douglas, IJ (2023). Codelists for: "Association between fluoroquinolones and hospitalization with aortic aneurysm or aortic dissection". [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003243.

Brown, J, Wing, K and Douglas, IJ (2023). ICD codelist for aortic aneurysm or aortic dissection. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003267.

Brown, J, Wing, K and Douglas, IJ (2023). Therapy codelists for antibiotics and corticosteroids - Aurum. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003263.

Brown, J, Wing, K and Douglas, IJ (2023). Therapy codelists for antibiotics and corticosteroids - GOLD. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003264.

Burkhart Colorado, AS, Lazzaro, A, Preston, C, Nusbacher, N, Boyd, K, Fiorillo, S, Martin, C, Siebert, J and Campbell, T (2023). Differential effects of antiretroviral treatment on immunity and gut microbiome composition in people living with HIV in rural versus urban Zimbabwe. [Data Collection]. Zenodo. https://zenodo.org/records/8346401

Buzasi, E and Carreira, H (2023). Clinical codelist - Osteoporosis - Aurum. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003465.

Buzasi, E and Carreira, H (2023). Clinical codelist - Osteoporosis - Gold. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003464.

Buzasi, E and Carreira, H (2023). Clinical codelist - any fracture - HES. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003447.

Buzasi, E and Carreira, H (2023). Clinical codelist - any fracture - aurum. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003445.

Buzasi, E and Carreira, H (2023). Clinical codelist - any fracture - gold. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003446.

Buzasi, E and Carreira, H (2023). Clinical codelist - hip fractures - Aurum. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003440.

Buzasi, E and Carreira, H (2023). Clinical codelist - hip fractures - gold. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003448.

Buzasi, E and Carreira, H (2023). Clinical codelist - pelvic fracture - Gold. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003466.

Buzasi, E and Carreira, H (2023). Clinical codelist - pelvic fractures - aurum. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003441.

Buzasi, E and Carreira, H (2023). Clinical codelist - proximal humeral fractures - aurum. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003442.

Buzasi, E and Carreira, H (2023). Clinical codelist - proximal humerus fracture - Gold. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003468.

Buzasi, E and Carreira, H (2023). Clinical codelist - spinal fractures - aurum. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003443.

Buzasi, E and Carreira, H (2023). Clinical codelist - spine fracture - gold. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003474.

Buzasi, E and Carreira, H (2023). Clinical codelist - wrist fracture - gold. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003475.

Buzasi, E and Carreira, H (2023). Clinical codelist - wrist fractures - Aurum. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003444.

Buzasi, E and Carreira, H (2023). Therapy codelist - Bisphosphanates - Aurum. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003423.

Buzasi, E and Carreira, H (2023). Therapy codelist - Bisphosphanates - Gold. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003424.

Buzasi, E and Carreira, H (2023). Therapy codelist - hormone replacement therapy - Aurum. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003449.

Buzasi, E and Carreira, H (2023). Therapy codelist - hormone replacement therapy - gold. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003450.

Buzasi, E, Carreira, H, Funston, G, Mansfield, KE, Forbes, H, Strongman, H and Bhaskaran, K (2023). Codelists for: "Risk of fractures in half a million survivors of 20 cancers: a population-based matched cohort study using linked UK electronic health records". [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003415.

C

Cadogan, S and Warren-Gash, C (2023). Clinical codelists for: "A comparison of the prevalence of electronic health record diagnoses of herpes zoster and simplex with self-reported prevalence from national population surveys and cohorts in England". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002001.

Campbell, J (2023). Codelists for: "Covid-19 during pregnancy and risk of miscarriage or stillbirth: A matched cohort study using English electronic health data". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003323.

Carrasco-Tenezaca, M, Jawara, M, Lee, DS, Holmes, MS, Ceesay, S, McCall, P, Pinder, M, D'Alessandro, U, Knudsen, JB, Lindsay, SW and Wilson, AL (2023). Entomological dataset from Effect of passive and active ventilation on malaria mosquito-house entry and human comfort: an experimental study in rural Gambia. [Data Collection]. The Royal Society. https://doi.org/10.6084/m9.figshare.22284747.v1

Carrasco-Tenezaca, M, Jawara, M, Lee, DS, Holmes, MS, Ceesay, S, McCall, P, Pinder, M, D'Alessandro, U, Knudsen, JB, Lindsay, SW and Wilson, AL (2023). Environmental dataset from Effect of passive and active ventilation on malaria mosquito-house entry and human comfort: an experimental study in rural Gambia. [Data Collection]. The Royal Society. https://doi.org/10.6084/m9.figshare.22284744.v1

Carreira, H (2023). Clinical codelist - Alcohol - gold. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003422.

Carreira, H and Strongman, H (2023). Clinical codelist - Alcohol - aurum. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003421.

Carter, N, Webb, E, Lebina, L, Motsomi, K, Bosch, Z, Martinson, N and MacPherson, P (2023). Data supporting "Prevalence of subclinical pulmonary tuberculosis and its association with HIV in household contacts of tuberculosis in two South African provinces: analysis of a cluster-randomised trial". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003373.

Cerdeira, L, Dyson, ZA and Holt, KE (2023). typhoidgenomics/TyphiNET. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.5281/zenodo.5338903

Chapman, LA, Aubry, M, Maset, N, Russell, T, Knock, ES, Lees, JA, Mallet, H, Cao-Lormeau, V and Kucharski, AJ (2023). Impact of vaccinations, boosters and lockdowns on COVID-19 waves in French Polynesia. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7790839

Chatterjee, S, Das, P, Shikhule, A, Munje, R and Vassall, A (2023). Journey of the tuberculosis patients in India from onset of symptom till one-year post-treatment. Complete dataset. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001564.s009

Checchi, F (2023). francescochecchi/yem_diaspora_mortality. [Data Collection]. Github. https://github.com/francescochecchi/yem_diaspora_mortality

Choko, A and Corbett, EL (2023). Baseline data for the fishermen’s schistosomiasis and HIV services (FISH) cluster randomized trial in Mangochi, Malawi. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003363.

Churcher, T, Stopard, I, Hamlet, A, Dee, D, Sanou, A, Rowland, M, Guelbeogo, M, Emidi, B, Mosha, J, Challenger, J, Denz, A, Charles, G, Russell, E, Fitzjohn, R, Winskill, P, Fornadel, C, Mclean, T, Digre, P, Wagman, J, Mosha, F, Cook, J, Akogbéto, M, Djogbenou, L, Ranson, H, Manjurano, A, N'fale, S, Protopopoff, N, Accrombessi, M, Ngufor, C, Foster, G and Sherrard-Smith, E (2023). MINT-data-v20230208. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.8344311

Cleghorn, LAT, Wall, RJ, Albrecht, S, MacGowan, SA, Norval, S, De Rycker, M, Woodland, A, Spinks, D, Thompson, S, Patterson, S, Corpas Lopez, V, Dey, G, Collie, IT, Hallyburton, I, Kime, R, Simeons, FRC, Stojanovski, L, Frearson, JA, Wyatt, PG, Read, KD, Gilbert, IH and Wyllie, S (2023). Development of a 2,4-Diaminothiazole Series for the Treatment of Human African Trypanosomiasis Highlights the Importance of Static–Cidal Screening of Analogues. [Data Collection]. ACS Publications. https://doi.org/10.1021/acs.jmedchem.3c00509.s002

Clifford, S and Hackman, J (2023). Effectiveness of BNT162b2 and ChAdOx1 against SARS-CoV-2 household transmission. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7618847

Cunningham-Oakes, E, Bronowski, C, Chinyama, E, Jere, KC, Sindhu, KNC, Kang, G, Iturriza-Gómara, M, Darby, AC and Parker, EPK (2023). Increased bacterial taxonomic and functional diversity is associated with impaired rotavirus vaccine immunogenicity in infants from India and Malawi. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.6937780.v1

D

Davidson, J (2023). Clinical codelist - Lupus - Aurum. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003459.

Davidson, J (2023). Clinical codelist - Lupus - Gold. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003460.

Davidson, J (2023). Clinical codelist - Lupus - HES. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003461.

Davidson, J (2023). Clinical codelist - chronic kidney disease - HES. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003455.

Davidson, J (2023). Clinical codelist - coeliac - HES. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003432.

Davidson, J (2023). Clinical codelist - coeliac - aurum. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Davidson, J (2023). Clinical codelist - coeliac - gold. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003431.

Davidson, J (2023). Clinical codelist - eating disorders - HES. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003434.

Davidson, J (2023). Clinical codelist - eating disorders - aurum. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003436.

Davidson, J (2023). Clinical codelist - eating disorders - gold. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003435.

Davidson, J (2023). Clinical codelist - epilepsy - HES. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003437.

Davidson, J (2023). Clinical codelist - epilepsy - aurum. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003439.

Davidson, J (2023). Clinical codelist - epilepsy - gold. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003438.

Davidson, J (2023). Clinical codelist - inflammatory bowel disease - Aurum. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003451.

Davidson, J (2023). Clinical codelist - inflammatory bowel disease - HES. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003454.

Davidson, J (2023). Clinical codelist - inflammatory bowel disease - gold. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003452.

Davidson, J (2023). Clinical codelist - liver disease - HES. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003458.

Davidson, J (2023). Clinical codelist - liver disease - aurum. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003456.

Davidson, J (2023). Clinical codelist - liver disease - gold. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003457.

Davidson, J (2023). Clinical codelist - rheumatoid arthritis - HES. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003471.

Davidson, J (2023). Clinical codelist - rheumatoid arthritis - aurum. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003469.

Davidson, J (2023). Clinical codelist - rheumatoid arthritis - gold. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003470.

Davidson, J (2023). Therapy codelist - oral corticosteroids - aurum. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003462.

Davidson, J (2023). Therapy codelist - oral corticosteroids - gold. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003463.

Daynes, E, Baldwin, M, Greening, NJ, Yates, T, Bishop, NC, Mills, G, Roberts, M, Hamrouni, M, Plekhanova, T, Vogiatzis, I, Echevarria, C, Nathu, R, McAuley, HJC, Latimer, L, Glennie, J, Chambers, F, Penfold, R, Hume, E, Megaritis, D, Alexiou, C, Potthoff, S, Hogg, MJ, Haighton, C, Nichol, B, Leavy, OC, Richardson, M, Elneima, O, Singapuri, A, Sereno, M, Saunders, RM, Harris, VC, Nolan, CM, Bolton, C, Houchen-Wolloff, L, Harrison, EM, Lone, N, Quint, J, Chalmers, JD, Ho, L, Horsley, A, Marks, M, Poinasamy, K, Ramen, B, Wain, LV, Brightling, C, Man, WD, Evans, R and Singh, SJ (2023). Supplementary information files for The effect of COVID rehabilitation for ongoing symptoms post hospitalisation with COVID-19 (PHOSP-R): protocol for a randomised parallel group controlled trial on behalf of the PHOSP consortium. [Data Collection]. Loughborough University. https://doi.org/10.17028/rd.lboro.22189279.v1

De Barros, B, Pierce, R, Sprenger, C, Ong, ELH and Walker, SL (2023). COVID-19 vaccination and leprosy–A UK hospital-based retrospective cohort study. Database. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0011493.s001

Deadman, D, Carreira, H and Strongman, H (2023). Clinical codelist - cancer - aurum. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003426.

Dorsey, G, Kamya, M, Greenhouse, B, Arinaitwe, E, Kilama, M, Nankabirwa, J, Rek, J, Nsobya, S, Mawejje, H, Nzarubara, B, Lavoy, G, Kizza, T, Musiime, A, Kigozi, S, Ssewanyana, I, Rosenthal, P, Rodriguez-Barraquer, I, Clark, T, Conrad, M, Staedke, SG, Drakeley, C, Donnelly, M, Lindsay, S, Smith, D, Bousema, T and Andolina, C (2023). Dataset: PRISM2 ICEMR Cohort. [Data Collection]. ClinEpiDB. https://clinepidb.org/ce/app/workspace/analyses/DS_51b40fe2e2/new

Downs, LO, Campbell, C, Abouyannis,, M, Otiende, M, Kapulu, M, Obiero, CW, Hamaluba, M, Ngetsa, C, Andersson, M, Githinji, G, Warimwe, G, Baisley, K, Scott, JAG, Matthews, PC and Etyang, A (2023). Replication Data for: Where Do Those Data Go? Reuse of screening results from clinical trials to estimate population prevalence of HBV infection in adults in Kilifi, Kenya. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/FPUH4R

Durán, CE, Messina, D, Gini, R, Riefolo, F, Aragón, M, Belitser, S, Bissacco, CA, Bots, SH, de Burgos, A, Carreras-Martínez, JJ, Correcher-Martínez, E, Douglas, IJ, Garcia-Poza, P, Girardi, A, Herings, R, Hoxhaj, V, Huerta, C, Hyeraci, G, Ientile, V, Ingrasciotta, Y, Limoncella, G, Lupattelli, A, Maglanoc, L, Martin, I, Martin, M, Mira-Iglesias, A, Mohammadi, S, Molero, E, Nordeng, H, Oberski, D, Overbeek, J, Pallejà, M, Riera-Arnau, J, Santacà, K, Siiskonen, S, Souverein, P, Schultze, A, Swart, K, Trifirò, G, Urchueguía, A, Villalobos, F, Weibel, D, Zhao, J, Klungel, O and Sturkenboom, M (2023). Rapid Safety Assessment of SARS-CoV-2 Vaccines in EU Member States using Electronic Health Care Data Sources (COVID Vaccine Monitor-CVM study): Final Study Report for WP3 (electronic health record data). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10093613

E

Eckold, C, van Doorn, CL, Dockrell, H, Ottenhoff, TH, Vianello, E and Cliff, JM (2023). Impaired resolution of blood transcriptomes through tuberculosis treatment with diabetes comorbidity. [Data Collection]. NCBI Gene Expression Omnibus. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE193978

Ekoriko, P (2023). lshtm-public/rds-ui. [Data Collection]. Bitbucket. https://bitbucket.org/lshtm-public/rds-ui

Emery, JC, Dodd, PJ, Banu, S, Frascella, B, Garden, FL, Horton, KC, Hossain, S, Law, I, van Leth, F, Marks, GB, Nguyen, HB, Nguyen, HV, Onozaki, I, Quelapio, MID, Richards, AS, Shaikh, N, Tiemersma, EW, White, RG, Zaman, K, Cobelens, F and Houben, RM (2023). epidemery/subclinical_transmission. [Data Collection]. GitHub. https://github.com/epidemery/subclinical_transmission

Emes, ET and Naylor, N (2023). Trescovia/AHHME. [Data Collection]. Github. https://github.com/Trescovia/AHHME

Etienne, RS, Valente, L, Phillimore, AB, Haegeman, B, Lambert, JW, Santos Neves, P, Xie, S, Bilderbeek, RJ, Hildenbrandt, H, Hauffe, T, Laudanno, G, Kristensen, N and Scherrer, R (2023). DAISIE: Dynamical Assembly of Islands by Speciation, Immigration and Extinction. [Data Collection]. Comprehensive R Archive Network. https://cran.r-project.org/package=DAISIE

Etyang, AO, Kapesa, S, Odipo, E, Bauni, E, Kyobutungi, C, Abdalla, M, Mutner, P, Musani, SK, Macharia, A, Williams, TN, Cruickshank, JK, Smeeth, L and Scott, JAG (2023). Replication Data for: Effect of Previous Exposure to Malaria on Blood Pressure in Kilifi, Kenya: A Mendelian Randomization Study. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/NCFR6X

F

Federspiel, F (2023). Interview materials for PhD Project: "Development Assistance, External Public Debt and Equity of Domestic Health Financing Contributions in Low- and Middle-Income Countries: Panel Data Analysis and Case Study in Senegal". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003698.

Fivian, E, Kadiyala, S, Harris-fry, H, Allen, E, Parida, M, Satyanarayan, M, Satyaranjan, B, Shibanath, P and Ronali, P (2023). Data for: Mobile Interventions for Upscaling Participatory Action and Videos for Agriculture and Nutrition (m-UPAVAN). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003635.

Floyd, S and Schaap, A (2023). Dataset for: "The impact of community-based, peer-led sexual and reproductive health services on knowledge of HIV-status among adolescents and young people aged 15-24 in Lusaka, Zambia: the Yathu Yathu cluster randomized trial". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003310.

Fombah, AE, Chen, H, Owusu-Kyei, K, Quinto, L, Gonzalez, R, Williams, J, Berne, ML, Wassenaar, M, Jalloh, A, Sunders, J, Ramirez, M, Bertran-Cobo, C, Saute, F, Ekouevi, DK, Briand, V, Kamara, AR, Sesay, T, Samai, M and Menéndez, C (2023). MULTIPLY - Baseline household survey, Sierra Leone. [Data Collection]. CORA.Repositori de Dades de Recerca. https://doi.org/10.34810/data603

Forbes, H and Carreira, H (2023). Clinical codelist - Body Mass Index - Aurum. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003425.

Foster-Nyarko, E, Holt, KE, Cottingham, H, Wick, R, Judd, LM, Lam, M, Wyres, KL, Stanton, T, Tsang, KK, David, S, Bridel, S, Palma, F, Aanensen, DM and Brisse, S (2023). Nanopore-only assemblies for genomic surveillance of the global priority drug-resistant pathogen, Klebsiella pneumoniae. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.19745608.v2

Fu, H (2023). hfu915/dynamice_mrmaps. [Data Collection]. Github. https://github.com/hfu915/dynamice_mrmaps

G

Garcia, KKS, Soremekun, S, Bottomley, C, Abrahão, AA, de Miranda, CB, Drakeley, C, Ramalho, WM and Siqueira, AM (2023). Additional file 2 of Assessing the impact of the “malaria supporters project” intervention to malaria control in the Brazilian Amazon: an interrupted time-series analysis. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.24151173.v1

Garcia, KKS, Soremekun, S, Bottomley, C, Abrahão, AA, de Miranda, CB, Drakeley, C, Ramalho, WM and Siqueira, AM (2023). Additional file 3 of Assessing the impact of the “malaria supporters project” intervention to malaria control in the Brazilian Amazon: an interrupted time-series analysis. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.24151176.v1

García, GA, Janko, M, Hergott, DEB, Donfack, OT, Smith, JM, Mba Eyono, JN, DeBoer, KR, Nguema Avue, RM, Phiri, WP, Aldrich, EM, Schwabe, C, Stabler, TC, Rivas, MR, Cameron, E, Guerra, CA, Cook, J, Kleinschmidt, I and Bradley, J (2023). Additional file 1 of Identifying individual, household and environmental risk factors for malaria infection on Bioko Island to inform interventions. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.22610438.v1

Gaskell, KM, El kheir, N, Mirfendesky, M, Rampling, T, Marks, M, Houlihan, CF, Lemonge, N, Bristowe, H, Aslam, S, Kyprianou, D, Nastouli, E, Goldblatt, D, Fielding, K and Moore, DAJ (2023). S1 Data for: "Comparison of new and emerging SARS-CoV-2 variant transmissibility through active contact testing. A comparative cross-sectional household seroprevalence study". [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0284372.s003

Gasparrini, A (2023). gasparrini/MCC-SO2. [Data Collection]. Github. https://github.com/gasparrini/MCC-SO2

Gates Enterics Project, Kotloff, K, Hossain, MJ and Sow, S (2023). VIDA HUCS Gambia Mali Survey. [Data Collection]. ClinEpiDB. https://clinepidb.org/ce/app/workspace/analyses/DS_6741e4cc0a

Gates Enterics Project, Kotloff, K, Hossain, MJ, Sow, S and Omore, R (2023). VIDA Case Control. [Data Collection]. ClinEpiDB. https://clinepidb.org/ce/app/workspace/analyses/DS_0605f599e5

Giannini, F and Abbas, K (2023). fionagi/GASImpactModel. [Data Collection]. GitHub. https://github.com/fionagi/GASImpactModel

Gibb, R (2023). rorygibb/dengue_vietnam_ms: v1.0.0: Code base for Nature Communications MS. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10159288

Gibbs, H (2023). hamishgibbs/ghana_cdr_aggregation. [Data Collection]. Github. https://github.com/hamishgibbs/ghana_cdr_aggregation

Glynn, JR (2023). Dataset codebook for a 30-year population-based study examining the contribution of remote M.tuberculosis infection to tuberculosis. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002829.

Gomes, MC, Brokatzky, D, Bielecka, MK, Wardle, FC and Mostowy, S (2023). Shigella induces epigenetic reprogramming of zebrafish neutrophils. [Data Collection]. NCBI Gene Expression Omnibus. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE217063

Gonçalves, BP (2023). BronnerG/Hosp_Vacc_analysis: v1. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.8252908

Graham, S (2023). grahams99/Enhanced_surveillance_questionnaire. [Data Collection]. Github. https://github.com/grahams99/Enhanced_surveillance_questionnaire

Graham, S (2023). grahams99/Health-seeking-behaviour. [Data Collection]. Github. https://github.com/grahams99/Health-seeking-behaviour

Graham, S, McDonald, H and Parker, E (2023). Codelists for: “Identifying and quantifying confounding from health-seeking behaviour and healthcare access in observational research using UK electronic healthcare records”. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003684.

Greener, R (2023). 0xr0bert/ubereats-scraper. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.6962078

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Henderson, AD, Butler-Cole, BF, Wiedemann, M, Evans, D and Smith, R (2023). opensafely/openprompt-vaccine-long-covid. [Data Collection]. GitHub. https://github.com/opensafely/openprompt-vaccine-long-covid

Herrett, E and Piehlmaier, DM (2023). opensafely/lone_households. [Data Collection]. Github. https://github.com/opensafely/lone_households/

Hollingworth, SA, Leaupepe, G, Nonvignon, J, Fenny, AP, Odame, EA and Ruiz, F (2023). Additional file 1 of Economic evaluations of non-communicable diseases conducted in Sub-Saharan Africa: a critical review of data sources. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.24046073.v1

Holt, KE (2023). Global Typhoid Genomics Consortium 2022 - Genome Assemblies. [Data Collection]. Monash University. https://doi.org/10.26180/21431883.v1

Hou, Z, Lai, X, Liu, Y, Jit, M, Larson, H and Hai, F (2023). Assessing the impact of the 2018 Changchun Changsheng vaccine incident on childhood vaccination in China. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.8158678

Hyslop, C, Lutz, N, Tam, C, Thu, N, Main, L, Abdelaziz, S, Acikalin, D, Adams, B, Ahn, DE, Apenuwa, O, Barnes, A, Beever, A, Bill, C, Booth, A, Borthakur, B, Boyer, S, Boyes, K, Brown, S, Cairns, G, Candler, A, Collett, M, Collin, A, Coulthard, C, Dantas, L, Dariye, E, Dunn, A, Efthimiou, A, El Kilany, M, Fan, N, Fowks, L, Galang, JB, Glanz, B, Gonzales, J, Hard Af Segerstad-Smith, M, Harris, A, Hooseria, S, Hu, A, Hylton, A, James, M, Janiurek, A, Jones, O, Kamenkovich,, N, Katalan Nasi, A, Kennelly, R, Kline, K, Konle, J, Kunde, H, Laughton, I, Layton, E, Le, A, Lee, S, Linehan-Hill, H, Maddinson, C, Monikowska, L, Murrell, C, Muza, M, Needham-Hewavisenti, E, Newton, A, O'Keeffe, F, Palacio Sasse, L, Pang, SA, Parker, R, Perry, J, Prince, N, Ray, S, Reid, P, Robertson, M, Sakari, RR, Sarro, C, Seo, H, Shen, R, Shen, Q, Sherif, S, Shrestha, K, Spacey Martin, R, Speake, E, Sun, A, Taylor, H, Teginbayev, D, Troiano, M, Trung, I, Usman, I, Von Alten-Reuss, G, Wallock, W, Wang, H, Ward, J, Xia, M, Zionts, J and Zhukova, A (2023). Net Zero Stocktake 2023. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.8021260

I

International Centre for Eye Health (2023). Rapid Assessment of Avoidable Blindness Study Protocol Template. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/PUBS.00003744.

J

Joy, E, Sturgess, J and Allen, E (2023). AHHA Malawi Trial Dataset - Version 3. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003400.

Jucker, T, Hardwick, SR, Both, S, Elias, DM, Ewers, RM, Milodowski, DT, Saager, E, Iwamura, T, Murray, K, Swinfield, T and Coomes, DA (2023). Microclimate dataset of the SAFE project landscape. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.6477750

Juel, R (2023). Let’s just ask them. Perspectives on urban dwelling and air quality: a cross-sectional survey of 3,222 children, young people and parents. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.21947432.v1

Jung, S, Miura, F, Endo, A and Murayama, H (2023). SungmokJung/mpox_global: Initial release. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10056592

K

Kakande, A, Makanga, R, Kasamba, I, Kimono, B, Mugisha, J, Ruzagira, E, Kaleebu, P, Seeley, J and Newton, R (2023). Medical survey data to monitor trends in HIV epidemiology and assess the prevalence of Non-Communicable Diseases (NCDs) and associated factors in Central Uganda. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003702.

Kakande, A, Slivesteri, S, Ssali, A, Bahemuka, UM, Nsubuga, D, Muwanga, M, Nsereko, C, Ssemwanga, E, Robert, A, Seeley, J, Elliott, AM and Ruzagira, E (2023). Qualitative interview data on the factors that influence COVID-19 vaccine uptake among healthcare workers and older persons in three Ugandan hospitals and areas of Wakiso district. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003700.

Kakande, A, Ssemata, AS, Muhumuza, R, Atujuna, M, Abaasa, A, Fox, J, Ndekezi, D, Tshabalala, G, Nematadzira, T, Hornschuh, S, Nomvuyo, M, Ahmed, N, Maluadzi, M, Weiss, H, Seeley, J, Dietrich, JJ, Stranix-Chibanda, L, Webb, E, PrEPVacc Study Group and ITAPS team (2023). Data for: PrEP preference among adolescent boys and young men in three sub-Saharan African countries. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003232.

Kansiime, S, Hansen, C, Hayes, R, Ruzagira, E and PrEPVacc study team (2023). Dataset for: Developing HIV risk prediction tools in four African settings. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003540.

Kapulu, MC, Muthumbi, E, Otieno, E, Rossi, O, Ferruzzi, P, Necchi, F, Acquaviva, A, Martin, LB, Orindi, B, Mwai, K, Mwanzu, A, Bigogo, GM, Verani, JR, Mbae, C, Nyundo, C, Agoti, CN, Nakakana, UN, Conti, V, Bejon, P, Kariuki, S, Scott, JAG, Micoli, F and Podda, A (2023). Replication Data for: Age-dependent acquisition of IgG antibodies to Shigella serotypes – a retrospective analysis of sero-prevalence in Kenyan children. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/F5AV5G

Karumbi, J, Gorst, S, Gathara, D, Young, B and Williamson, P (2023). Survey Questions for LMIC stakeholders. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0002574.s001

Katumba, K, Tann, CJ, Webb, EL, Tenywa, P, Nampijja, M, Seeley, J and Greco, G (2023). The economic burden incurred by families caring for a young child with developmental disability in Uganda: User costing questionnaire. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0000953.s002

Katumba, K, Tann, C, Webb, E, Tenywa, P, Nampijja, M, Seeley, J and Greco, G (2023). Data supporting "The economic burden incurred by families caring for a young child with developmental disability in Uganda". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003311.

Keddie, SH (2023). shk313/Evaluating-sensitivity-and-specificity-from-LCM-a-simulation-study. [Data Collection]. Github. https://github.com/shk313/Evaluating-sensitivity-and-specificity-from-LCM-a-simulation-study

Kerac, M, Monga, M, Sikorski, C, Mcgrath, M and de silva, H (2023). Identifying underweight in infants and children: the novel “MAMI” slide chart (evaluating performance against traditional diagnostic methods, lookup tables and growth charts). [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003535.

Kerac, M, Monga, M, Sikorski, C, de silva, H and Mcgrath, M (2023). Study data for “Identifying underweight in infants and children using growth charts, lookup tables and a novel “MAMI” slide chart: a cross-over diagnostic and acceptability study”. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003513.

Khan, B, Hameed, W and Iqbal Avan, B (2023). Training of maternity service providers on supportive and dignified maternity care: pre-post training assessment. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.h44j0zpq5

Khan, D (2023). Kit comparison data. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.23269328.v3

Khongo, BD, Schmiedeknecht, K, Aron, MB, Nyangulu, PN, Mazengera, W, Ndarama, E, Tenner, AG, Baltzell, K and Connolly, E (2023). BEC Scores data. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5956963

Kim, C, Abbas, KM and vaccine-impact (2023). vaccine-impact/vaccine_amr. [Data Collection]. Github. https://github.com/vaccine-impact/vaccine_amr

Kim, ES, Adriko, M, Aidah, W, Oseku, KC, Lokure, D, Sabapathy, K and Webb, EL (2023). The impact of dual- versus single-dosing and fatty food co-administration on albendazole efficacy against hookworm among children in Mayuge district, Uganda: Results from a 2x2 factorial randomised controlled trial. S1 Data. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0011439.s006

Kinyanda, E, Birungi, C, Mpango, RS, Ssebunya, J, Nyiiro, F, Mbabazi, J, Nakaweesa, J, Ayikoru, T, Edwards, J, Turinayo, S and Namugumya, D (2023). Sexual and Physical Abuse among Patients with Severe Mental Illness in Kampala and Masaka – Coding Framework Data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002840.

Kirkwood, B, Roy, R, Bhopal, S and Soremekun, S (2023). Datasets for the study “Sustainable Programme Incorporating Nutrition & Games (SPRING): a multi-country-randomised controlled trial”. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003124.

Kitonsa, J, Kansiime, S, Kusemererwa, S, Onyango, M, Nayiga, B, Kabarambi, A, Mugisha, J, Kaleebu, P, Ruzagira, E and PrEPVacc Study Group (2023). Data for: Changes in self-reported risky sexual behaviour indicators among adults receiving regular risk reduction counselling and optional initiation of pre-exposure prophylaxis in an HIV vaccine preparedness study in Masaka, Uganda. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003403.

Knight, G (2023). Data Management for interview and focus group resources in health. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/PUBS.04646631

Knight, G and LSHTM Library, Archive & Open Research Services (2023). Data Management for MSc Summer Projects. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001857.

Knight, G and LSHTM Open Science Working Group (2023). LSHTM Open Research Survey 2022 Dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003322.

Knight, G and LSHTM Open Science Working Group (2023). LSHTM Open Research Survey Report 2022. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/PUBS.00003094.

Knight, GM, Waterlow, N, Wildfire, J and Clements, AJ (2023). aj-clements/Vivli-AMR-KG. [Data Collection]. Github. https://github.com/aj-clements/Vivli-AMR-KG/

Koltai, M (2023). mbkoltai/RSV-CEA-Kenya-South-Africa. [Data Collection]. Github. https://github.com/mbkoltai/RSV-CEA-Kenya-South-Africa

Kranzer, K (2023). Data for: "Comprehensive occupational health services for healthcare workers in Zimbabwe during the SARS-CoV-2 pandemic". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003679.

Krug, C, Neuman, M, Rosen, JE, Weinberger, M, Wallach, S, Lagaay, M, Punton, M, Prakash, A, Nsanya, MK, Ayieko, P, Kapiga, S, Ajayi, YP, Crawford, EE, Tenaw, E, Mussa, M, Shrestha, SK, Bottomley, C, Hargreaves, J and Doyle, AM (2023). Evaluating the adolescents 360 approach in Ogun (Nigeria), Nasarawa (Nigeria), Oromia (Ethiopia) and Mwanza (Tanzania) – Study data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003599.

Kutima, B, Kagucia, W, Mwai, K, Kimani, M, Sigilai, A, Mugo, D, Karani, K, Akech, D, Toroitich, M, Karia, B, Tuju, J, Ziraba, AK, Bigogo, G, Ochieng, C, Onyango, C, Lidechi, S, Munywoki, PK, Uyoga, S, Adetifa, IMO, Ochola-Oyier, LI, Bejon, P, Scott, JAG, Agweyu, A, Warimwe, GM and Nyagwange, J (2023). Replication Data for: Comparative performance of the InBios SCoV-2 DetectTM IgG ELISA and the in-house KWTRP ELISA in detecting SARS-CoV-2 spike IgG antibodies in Kenyan populations. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/FOYVMT

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LSHTM Electronic Health Records Group (2023). Incident dementia risk among patients with type 2 diabetes receiving metformin versus alternative oral glucose-lowering therapy: an observational cohort study using UK primary healthcare records. [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003402.

LSHTM Library & Archives Service (2023). LSHTM Data Compass Deposit Guides. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Lambert, J, Gruson, H, Kucharski, AJ, Gupte, P, Salmon, M, Campos, AV and Monticone, P (2023). epiverse-trace/epiparameter. [Data Collection]. Github. https://github.com/epiverse-trace/epiparameter/

Lambert, S (2023). Prospective observational cohort study of cutaneous leishmaniasis in Ethiopia - Informed consent form. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003618.

Leclerc, QJ (2023). qleclerc/phage_antibiotic_dynamics. [Data Collection]. Github.

Legge, H, Pullan, RL and Sartorius, B (2023). S1 Data for "Improved household flooring is associated with lower odds of enteric and parasitic infections in low- and middle-income countries: A systematic review and meta-analysis". [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0002631.s013

Leung, WTM (2023). wtm-leung/Network-modelling-review: Network modelling review v1.0.0. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7883258

Leung, WTM, Meeyai, A, Holt, HR, Khieu, B, Chhay, T, Seng, S, Pok, S, Chiv, P, Drake, T and Rudge, J (2023). Social contact patterns relevant for infectious disease transmission in Cambodia. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7642647

Leung, WTM, Rudge, JW and Fournié, G (2023). Supplementary material from "Simulating contact networks for livestock disease epidemiology: a systematic review". [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.6631153.v1

Leurent, B (2023). SADD synthetic cost-effectiveness dataset. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.19802632.v4

Ling, DB, Nguyen, W, Looker, O, Razook, Z, McCann, K, Barry, AE, Scheurer, C, Wittlin, S, Famodimu, MT, Delves, MJ, Bullen, HE, Crabb, BS, Sleebs, BE and Gilson, PR (2023). A Pyridyl-Furan Series Developed from the Open Global Health Library Block Red Blood Cell Invasion and Protein Trafficking in Plasmodium falciparum through Potential Inhibition of the Parasite’s PI4KIIIB Enzyme. [Data Collection]. ACS Publications. https://doi.org/10.1021/acsinfecdis.3c00138.s001

Ling, S (2023). supingling/SA_CKD. [Data Collection]. Github. https://github.com/supingling/SA_CKD

Liu, Y, Procter, SR, Pearson, CAB, Madriz Montero, A, Torres-Rueda, S, Asfaw, E, Uzochukwu, B, Drake, T, Bergren, E, Eggo, RM, Ruiz, F, Ndembi, N, Nonvignon, J, Jit, M and Vassall, A (2023). yangclaraliu/covid_vac_africa: BMCMed_R3. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7618748

London School of Hygiene & Tropical Medicine (2023). Data for: "Genomic diversity and antimicrobial resistance in clinical Klebsiella pneumoniae isolates from tertiary hospitals in Southern Ghana". [Data Collection]. NCBI Sequence Read Archive. https://trace.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA1052100

London School of Hygiene & Tropical Medicine (2023). Evaluation of MALDI-TOF MS for molecular typing of Acinetobacter baumannii in comparison with orthogonal methods. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/browser/view/PRJEB59585

London School of Hygiene & Tropical Medicine (2023). Phylogenetic inference of pneumococcal transmission from cross-sectional data, a pilot study. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/browser/view/PRJEB60532

London School of Hygiene & Tropical Medicine (2023). Plasmodium falciparum isolates from Mali collected in 2019-2020. [Data Collection]. NCBI Bioproject. https://www.ncbi.xyz/bioproject/944050

London School of Hygiene & Tropical Medicine (2023). Whole-Genome Sequencing of Chlamydia trachomatis Strains B/HAR36 and B/Tunis864. [Data Collection]. NCBI Bioproject. https://www.ncbi.nlm.nih.gov/bioproject/1051460

London School of Hygiene and Tropical Medicine (2023). Targeted Amplicon Sequencing of Brazilian Anopheles darlingi. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/browser/view/PRJEB61194

Lotto Batista, M, Rees, EM, Gómez, A, López, S, Castell, S, Kucharski, AJ, Ghozzi, S, Müller, GV and Lowe, R (2023). Data and R-code to accompany 'Towards an Early Warning System for Leptospirosis in North-Eastern Argentina'. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7865638

M

Mansfield, K (2023). Clinical codelist - Chronic kidney disease - gold. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003429.

Mansfield, K (2023). Clinical codelist - serum creatinine - gold. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003433.

Mansfield, KE, Wong, A and Tomlinson, LA (2023). Sex and the risk of acute reductions in kidney function after renin-angiotensin blockade: parallel analyses of a primary care cohort and two randomised trials. [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003242.

Mansfield, KE, Wong, A and Tomlinson, LA (2023). Diagnosis codelist - end stage kidney disease codes (icd-10). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003244.

Mansfield, KE, Wong, A and Tomlinson, LA (2023). Diagnosis codelist - end stage kidney disease codes (medcodes). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003241.

Mansfield, KE, Wong, A and Tomlinson, LA (2023). Procedure codelist - end stage kidney disease codes (opcs). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003245.

Marlais, T, Bickford-Smith, J, Talavera-López, C, Le, H, Chowdhury, F and Miles, MA (2023). BLAST results: S. stercoralis orthologues of the S. ratti E/S proteome. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0010777.s003

Marlais, T, Bickford-Smith, J, Talavera-López, C, Le, H, Chowdhury, F and Miles, MA (2023). Candidate coproantigen sequences in fasta format. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0010777.s006

Marlais, T, Bickford-Smith, J, Talavera-López, C, Le, H, Chowdhury, F and Miles, MA (2023). Predicted epitopes in S. stercoralis proteins using BepiPred and bcepred. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0010777.s005

Marlais, T, Bickford-Smith, J, Talavera-López, C, Le, H, Chowdhury, F and Miles, MA (2023). Protein identity, features and gene expression levels of S. stercoralis orthologues of S. ratti E/S proteomic data. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0010777.s004

Marlais, T, Bickford-Smith, J, Talavera-López, C, Le, H, Chowdhury, F and Miles, MA (2023). S. stercoralis genes (n = 328) differentially expressed in gut-dwelling (dark blue) versus non-gut-dwelling (light blue) life stages of the nematode with those containing predicted epitopes indicated. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0010777.s002

Masselot, P and Gasparrini, A (2023). Temperature-related mortality exposure-response functions for 854 cities in Europe. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7672107

Materu, J, Konje, ET, Urassa, M, Marston, M, Boerma, T and Todd, J (2023). Comparison of survival analysis approaches to modelling age at first sex among youth in Kisesa Tanzania. S1 Questionnaire. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0289942.s001

Materu, J, Konje, ET, Urassa, M, Marston, M, Boerma, T and Todd, J (2023). Eight survey rounds and adolescent survey used for this study. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0289942.s002

Mathur, R (2023). Clinical codelist - CPRD Gold - Chronic kidney disease read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003492.

Mathur, R (2023). Clinical codelist - CPRD Gold - Coronary heart disease read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003493.

Mathur, R (2023). Clinical codelist - CPRD Gold - Diabetes read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003495.

Mathur, R (2023). Clinical codelist - CPRD Gold - Diabetic retinopathy read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003496.

Mathur, R (2023). Clinical codelist - CPRD Gold - Heart failure read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003497.

Mathur, R (2023). Clinical codelist - CPRD Gold - Hypertension. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003498.

Mathur, R (2023). Clinical codelist - CPRD Gold - Ischemic stroke. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003499.

Mathur, R (2023). Clinical codelist - CPRD Gold - Neuropathy. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003501.

Mathur, R (2023). Clinical codelist - CPRD Gold - Peripheral vascular disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003502.

Mathur, R (2023). Clinical codelist - CPRD Gold - Smoking. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003503.

Mathur, R (2023). Therapy codelist - CPRD Gold - Antihypertensive medications read codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003491.

Mathur, R (2023). Therapy codelist - CPRD Gold - Diabetes medications. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003494.

Mathur, R (2023). Therapy codelist - CPRD Gold - Statins. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003504.

Mathur, R, Wong, A and Tomlinson, LA (2023). Diagnosis codelist - retinopathy codes (icd-10). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003261.

Mathur, R, Wong, A and Tomlinson, LA (2023). Diagnosis codelist - retinopathy codes (medcodes). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003260.

Mathur, R, Wong, A and Tomlinson, LA (2023). Diagnosis codelist - retinopathy codes (opcs). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003262.

Matthewman, J (2023). Analysis code and codelists for the UK part of the study "Association of different prescribing patterns for oral corticosteroids with fracture preventive care among older adults: Population-based cohort studies in the UK and Canada". [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7950693

Mbau, R, Vassall, A, Gilson, L and Barasa, E (2023). Additional file 1 of Factors influencing institutionalization of health technology assessment in Kenya. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.23564916.v1

Mclean, E (2023). Family network and household composition: a longitudinal dataset derived from the Karonga HDSS, in rural Malawi (author-written code). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10037084

Mclean, E (2023). Local and long-distance migration among young people in rural Malawi: importance of age, sex and family (author-writter code). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7797356

Minassian, C, Allen, LA, Okosieme, O, Vaidya, B and Taylor, P (2023). Supplementary material for: "Preconception management of hyperthyroidism and thyroid status in subsequent pregnancy: a population-based cohort study". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003365.

Monod, M, Brizzi, A, Galiwango, R, Ssekubugu, R, Chen, Y, Xi, X, Kankaka, EN, Ssempijja, V, Abeler-Dörner, L, Akullian, A, Pereira Blenkinsop, A, Bonsall, D, Chang, L, Dan, S, Fraser, C, Golubchik, T, Gray, R, Jackson, J, Kigozi, G, Laeyendecker, O, Mills, L, Quinn, T, Reynolds, SJ, Santelli, J, Sewankambo, N, Spencer, S, Ssekasanvu, J, Waver, M, Serwadda, D, Godfrey-Faussett, P, Kagaayi, J, Grabowski, MK, Ratmann, O, Rakai Health Sciences Program and PANGEA-HIV consortium (2023). Phylogenetic and epidemiologic data relating to age-specific HIV incidence and transmission in Rakai, Uganda, 2003-2018. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7741616

Monod, M, Brizzi, A, Ratmann, O, Dan, S, Xi, X, Galiwango, R, Ssekubugu, R, Chen, Y, Kankaka, EN, Ssempijja, V, Abeler-Dörner, L, Akullian, A, Blenkinsop, AP, Bonsall, D, Chang, L, Fraser, C, Golubchik, T, Gray, R, Jackson, J, Laeyendecker, O, Mills, L, Quinn, T, Santelli, J, Sewankambo, N, Spencer, S, Ssekasanvu, J, Waver, M, Serwadda, D, Godfrey-Faussett, P, Kagaayi, J and Grabowski, MK (2023). Phylogenetic and epidemiologic data relating to age-specific HIV incidence and transmission in Rakai, Uganda, 2003-2018. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7741616

Mujumbusi, L, Nalwadda, E, Ssali, A, Pickering, L, Seeley, J, Meginnis, K and Lamberton, PHL (2023). Raw data extracted and anonymised data after coding. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0010687.s001

Mulla, S, Ludlam, AR, Elragig, A, Slack, C, Balklava, Z, Stich, M and Cheong, A (2023). Supplementary material from "A biphasic model of lifespan in nematode Caenorhabditis elegans worm". [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.6403443.v2

Murphy, A, Palafox, B, Chifamba, J, Kruger, IM, Ncube, BJ, Ncube, TL, Rangarajan, S, Swart, EC, Tsolkile, L, Walli-Attaei, M, West, NJ, Yeates, KE, Yusuf, S, Mckee, M and Hanson, K (2023). Comparing estimates of household expenditures between pictorial diaries and surveys in three low- and middle-income countries. Example pictorial diary tool used in Tanzania. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001739.s004

Murphy, A, Palafox, B, Chifamba, J, Kruger, IM, Ncube, BJ, Ncube, TL, Rangarajan, S, Swart, EC, Tsolkile, L, Walli-Attaei, M, West, NJ, Yeates, KE, Yusuf, S, Mckee, M and Hanson, K (2023). Comparing estimates of household expenditures between pictorial diaries and surveys in three low- and middle-income countries: PURE health expenditure questionnaire. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001739.s003

Mweemba, A, Kelly, P, Heimburger, DC, Mutale, W, Nzala, S, Wester, WC, Banda, J, Mulenga, LB, Siwingwa, M and Todd, J (2023). Effect of anti-retroviral regimen on proximal tubular function in Zambian adolescents and young adults living with HIV. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.22044047.v1

N

Nab, L, Davy, S, Parker, E and Hulme, W (2023). opensafely/covid_mortality_over_time. [Data Collection]. Github. https://github.com/opensafely/covid_mortality_over_time

Nadkarni, A (2023). Interventions to increase help-seeking for mental health care in low-and-middle-income countries: a systematic review. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003564.

Namulondo, J, Nyangiri, OA, Kimuda, MP, Nambala, P, Nassuuna, J, Egesa, M, Nerima, B, Biryomumaisho, S, Mugasa, CM, Nabukenya, I, Kato, D, Elliott, A, Noyes, H, Tweyongyere, R, Matovu, E and Mulindwa, J (2023). RNA Sequence data analysis using DESeq2 pipeline. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0011455.s009

Napier, G (2023). GaryNapier/spolpred. [Data Collection]. Github. https://github.com/GaryNapier/spolpred

Ndzomo, P, Tchatchouang, S, Tabah, EN, Njamnshi, T, Tsanga, MVN, Bondi, JA, Handley, R, Beiras, CG, Tchatchueng, J, Müller, C, Lüert, S, Knauf, S, Boyomo, O, Harding-Esch, E, Mitja, O, Crucitti, T, Marks, M and Eyangoh, S (2023). Distribution of H. ducreyi and T. pallidum positive participants per site. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0011553.s001

Ndzomo, P, Tchatchouang, S, Tabah, EN, Njamnshi, T, Tsanga, MVN, Bondi, JA, Handley, R, Beiras, CG, Tchatchueng, J, Müller, C, Lüert, S, Knauf, S, Boyomo, O, Harding-Esch, E, Mitja, O, Crucitti, T, Marks, M and Eyangoh, S (2023). Socio-demographic characteristics of participants. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0011553.s002

Neves, PS, Lambert, JW, Etienne, RS, Bilderbeek, R, Xie, S, Valente, L, Hildenbrandt, H, Scherrer, R and Yangshen0325 (2023). rsetienne/DAISIE. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4054058

Nightingale, E (2023). esnightingale/vl-collection-methods-xm. [Data Collection]. GitHub. https://github.com/esnightingale/vl-collection-methods-xm

O

Ogbulafor, N, Uhomoibhi, P, Shekarau, E, Nikau, J, Okoronkwo, C, Fanou, NML, Mbaye, IM, Ndiaye, J, Tchouatieu, A, Poku-Awuku, A, Merle, C, Scott, S, Milligan, P, Ali, A, Yusuf, HE, Oguche, S and Dahiru, T (2023). Additional file 1 of Facilitators and barriers to seasonal malaria chemoprevention (SMC) uptake in Nigeria: a qualitative approach. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.22617988.v1

Olubodun, T, Macharia, PM, Wong, KL, Gwacham-Anisiobi, U, Ogunyemi, O, Beňová, L, Omolade Abejirinde, I, Makanga, PT, Wang, J, Afolabi, BB and Banke-Thomas, A (2023). Geocoded database of health facilities with verified capacity for caesarean section in urban Nigeria. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.22689667.v2

Osayande, I, Ogunyemi, O, Gwacham-Anisiobi, U, Olaniran, A, Yaya, S and Banke-Thomas, A (2023). Additional file 2 of Prevalence, indications, and complications of caesarean section in health facilities across Nigeria: a systematic review and meta-analysis. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.23290502.v1

Otiende, M, Nyaguara, A, Bottomley, C, Walumbe, D, Mochamah, G, Amadi, D, Nyundo, C, Kagucia, E, Etyang, A, Adetifa, I, Brand, S, Maitha, E, Chondo, E, Nzomo, E, Aman, R, Mwangangi, M, Amoth, P, Kasera, K, Ng'ang'a, W, Barasa, E, Tsofa, B, Mwangangi, J, Bejon, P, Agweyu, A, Williams, TN and Scott, JAG (2023). Replication Data for: Impact of COVID-19 on mortality in coastal Kenya: a longitudinal open cohort study. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/HAGRAK

P

PANGEA-HIV Consortium (2023). PANGEA-HIV/PANGEA-Sequences: v1.0.0. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10075814

Pavlich-Mariscal, J, Eggo, RM, Kucharski, AJ, Gruson, H, Russell, TW, Valle Campos, A, Cucunubá, ZM, Santos-Vega, M, Gupte, P, Azam, J, Torres Domínguez, N, Lambert, J, Gomez, G, Umaña, JD, Quevedo-Vega, DS, Gámez López, ME and Carnegie, A (2023). epiverse-trace. [Project]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://github.com/epiverse-trace

Pearson, CAB and Hladish, T (2023). tjhladish/AbcSmc. [Data Collection]. Github. https://github.com/tjhladish/AbcSmc

Pearson, CAB, Hladish, T, Pillai, AN and Chao, D (2023). tjhladish/dengue-abm. [Data Collection]. Github. https://github.com/tjhladish/dengue-abm

Pearson, CAB, Thompson, S, Van Zandvoort, K, Eggo, RM and Jarvis, CI (2023). cmmid/covidm_reports: HEA Snapshot. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7741616

Perera, V, Allen, LN, Farrand, C, Kwong, EJL, Liyanage, I and Wickramasinghe, K (2023). Evaluating the role of salt intake in achieving WHO NCD targets in the Eurasian Economic Union: A PRIME modeling study. S1 File. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0289112.s012

Perski, O and Simons, D (2023). Dataset and code underpinning "Classification of lapses in smokers attempting to stop: A supervised machine learning approach using data from a popular smartphone application.". [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.8423920

Phelan, J (2023). jodyphelan/host-pathogen. [Data Collection]. Github. https://github.com/jodyphelan/host-pathogen

Phelan, JE and Menzel, P (2023). jodyphelan/tbdb. [Data Collection]. Github. https://github.com/jodyphelan/tbdb

Phelan, J and Manko, E (2023). jodyphelan/malaria-db. [Data Collection]. GitHub. https://github.com/jodyphelan/malaria-db

Phelan, J and Thorpe, J (2023). jodyphelan/malaria-profiler. [Data Collection]. GitHub. https://github.com/jodyphelan/Malaria-Profiler

Picbougoum, TB, Somda, MS, Zango, SH, Lohmann, J, De Allegri, M, Saidou, H, Hien, H, Meda, N and Robert, A (2023). Study database from the baseline survey of the impact evaluation of the PBF program in Burkina Faso. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001248.s001

Pietersen, E, Anderson, K, Cox, H, Dheda, K, Bian, A, Shepherd, BE, Sterling, TR, Warren, RM and van der Heijden, YF (2023). Data for: "Variation in missed doses and reasons for discontinuation of anti-tuberculosis drugs during hospital treatment for drug-resistant tuberculosis in South Africa". [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0281097.s001

Pillai, AN, Hladish, T, Pearson, CAB, Toh, B, Noah4944 and Stoltzfus, A (2023). tjhladish/covid-abm: Active Vaccination Experiment 2023-02-02. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7601663

Piper, J, Ntozini, R and Prendergast, A (2023). SHINE 7-year Follow-up. [Data Collection]. Open Science Framework. https://doi.org/10.17605/OSF.IO/PHV83

Portnoy, A, Yamanaka, T, Nguhiu, P, Nishikiori, N, Garcia Baena, I, Floyd, K and Menzies, NA (2023). Costs incurred by people receiving TB treatment in low- and middle-income countries: a meta-regression analysis. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.8165289

Powell-Jackson, T, Goodman, C and King, J (2023). Replication package for: "Management practices and quality of care: Evidence from the private health care sector in Tanzania". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003622.

Powell-jackson, T, King, JJC, Makungu, C, Quaife, M and Goodman, C (2023). Management practices and quality of care: Evidence from the private health care sector in Tanzania. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.8305424

Prem, K (2023). kieshaprem/hpv-1-dose: First release of the HPV 1-dose global repository. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.8133734

Procter, SR (2023). mert0248/GBS-vax-econ-model. [Data Collection]. Github. https://github.com/mert0248/GBS-vax-econ-model

Pry, J, Simbeza, S, Geng, E, Mutale, J, Sikombe, K, Jere, L, Bukankala, C and Beres, L (2023). Depression among healthcare workers in Lusaka, Zambia during the COVID-19 pandemic. [Data Collection]. Dryad. https://doi.org/10.25338/B8S646

Pung, R (2023). rachaelpung/covid_missed_infections. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7538046

Pung, R, Clapham, HE, Russell, TW, Lee, VJ and Kucharski, AJ (2023). Relative role of border restrictions, case finding and contact tracing in controlling SARS-CoV-2 in the presence of undetected transmission: a mathematical modelling study. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7538040

Q

Qian, GY (2023). GeorgeYQian/Marburg_Branching_Process_Model. [Data Collection]. GitHub. https://github.com/GeorgeYQian/Marburg_Branching_Process_Model

Quevedo, DS, Gupte, P, Gomez, G, Gruson, H, Hartgerink, C, tracelac and Cucunubá, ZM (2023). epiverse-trace/vaccineff: vaccineff 0.0.1. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.11449783

R

Racané, L, Ptiček, L, Kostrun, S, Raić-Malić, S, Taylor, MC, Delves, M, Alsford, S, Olmo, F, Francisco, AF and Kelly, JM (2023). Bis-6-amidino-benzothiazole Derivative that Cures Experimental Stage 1 African Trypanosomiasis with a Single Dose. [Data Collection]. ACS Publications. https://doi.org/10.1021/acs.jmedchem.3c01051.s002

Raghavan, M, Kalantar, K, Duarte, E, Teyssier, N, Takahashi, S, Kung, A, Rajan, JU, Rek, J, Tetteh, KKA, Drakeley, C, Ssewanyana, I, Rodriguez-Barraquer, I, Greenhouse, B and DeRisi, J (2023). Proteome-wide antigenic profiling in Ugandan cohorts identifies associations between age, exposure intensity, and responses to repeat-containing antigens in Plasmodium falciparum. [Data Collection]. Dryad. https://doi.org/10.7272/Q69S1P9G

Ramaprasad, A, Burda, P, Koussis, K, Thomas, JA, Pietsch, E, Calvani, E, Howell, SA, MacRae, JI, Snijders, AP, Gilberger, T and Blackman, MJ (2023). Label-free quantitation of proteins detected in SUB1-null schizonts in the presence or absence of C2. [Data Collection]. PLOS Pathogens. https://doi.org/10.1371/journal.ppat.1011449.s007

Ramaprasad, A, Burda, P, Koussis, K, Thomas, JA, Pietsch, E, Calvani, E, Howell, SA, MacRae, JI, Snijders, AP, Gilberger, T and Blackman, MJ (2023). Raw peak intensities of various lipid species measured before and after egress in RAP-treated (+RAP) and mock-treated (-RAP) LCAT:2loxPint parasites. [Data Collection]. PLOS Pathogens. https://doi.org/10.1371/journal.ppat.1011449.s009

Ramaprasad, A, Burda, P, Koussis, K, Thomas, JA, Pietsch, E, Calvani, E, Howell, SA, MacRae, JI, Snijders, AP, Gilberger, T and Blackman, MJ (2023). Raw peak intensities of various lipid species measured in LCAT:2loxPint egress-stalled schizonts following mock-or RAP-treatment at ring stages. [Data Collection]. PLOS Pathogens. https://doi.org/10.1371/journal.ppat.1011449.s008

Ramaprasad, A, Burda, P, Koussis, K, Thomas, J, Pietsch, E, Calvani, E, Howell, SA, MacRae, JI, Snijders, AP, Gilberger, T and Blackman, MJ (2023). Sequences of oligonucleotides and other synthetic DNA used in this study. [Data Collection]. PLOS Pathogens. https://doi.org/10.1371/journal.ppat.1011449.s006

Ramke, J, Silva, JC, Gichangi, M, Ravilla, T, Burn, H, Buchan, JC, Welch, V, Gilbert, CE and Burton, MJ (2023). Round 2 responses from panellists. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0000631.s005

Richards, AS (2023). alexandrasrichards/natural_history_tb_disease. [Data Collection]. GitHub. https://github.com/alexandrasrichards/natural_history_tb_disease

Riffe, T and Aburto, JM (2023). A global assessment of the impact of violence on lifetime uncertainty. [Data Collection]. OSF. https://osf.io/degjy

Riffe, T, Acosta, E, Kamal, M, Donzowa, J, mskniffka, Dudel, C, Cimentada, J, Alburez, D, aishwaryamuralikrishnan, Aburto, JM, Pascariu, MD, Del Fava, E and Ribeiro, F (2023). timriffe/covid_age. [Data Collection]. Github. https://github.com/timriffe/covid_age

Roschnik, N and Clarke, S (2023). Project Jigifa Endline Survey 2016. [Data Collection]. The World Bank Microdata Library. https://doi.org/10.48529/vk9e-9085

Roy, R, Sikander, S and Soremekun, S (2023). Surveys of the Sustainable Programme Incorporating Nutrition & Games 2012-2017. [Data Collection]. The World Bank Microdata Library. https://microdata.worldbank.org/index.php/catalog/5684

Russell, TW (2023). Fits and plot data for the paper: "Combined analyses of within-host SARS-CoV-2 viral kinetics and information on past exposures to the virus in a human cohort identifies intrinsic differences of Omicron and Delta variants". [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.10223385

S

Sahani, MK, Mayhew, S and Hamuli, RP (2023). Data for: "Humanitarian sector (international non-governmental organisations) support to the community in Goma city/DRC during the COVID-19 pandemic period: expectations and reality". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003630.

Saleh, M and Howard, N (2023). Interview transcripts for: "Socio-political and organizational influences on national infectious disease surveillance for refugees: A qualitative case study in Lebanon". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003321.

Salowi, MA (2023). Rapid Assessment of Avoidable Blindness Dataset: Malaysia, Eastern Zone (2023). [Data Collection]. London School of Hygiene & Tropical Medicine RAAB Repository. https://doi.org/10.17037/RAABDATASET.e33de761-adce-4809-acb1-4bebe18ec108.

Salowi, MA (2023). Rapid Assessment of Avoidable Blindness Dataset: Malaysia, Sarawak (2023). [Data Collection]. London School of Hygiene & Tropical Medicine RAAB Repository. https://doi.org/10.17037/RAABDATASET.3478c85a-5395-4d51-8982-ffefee85bfb9.

Sanderson, T (2023). Processed INSDC dataset for MOV analysis. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.8252387

Sanderson, T, Bileschi, M and Belanger, D (2023). google-research/proteinfer. [Data Collection]. Github. https://github.com/google-research/proteinfer

Sanderson, T and Ruis, C (2023). theosanderson/molnupiravir. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.8101002

Santana-Penin, U, Lopez-Cedrun, J, Santana-Mora, U, Mora, MJ, Lorenzo-Franco, F, Varela-Centelles, P, López-Solache, A, Collier, T and Pocock, SJ (2023). Remodeling dental anatomy vs sham therapy for chronic temporomandibular disorders: A placebo-controlled randomized clinical trial. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.zkh189370

Sbarra, AN (2023). Evaluating scope and bias of population-level measles serosurveys: a systematic review and bias assessment. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.8393567

Schaap, A and Floyd, S (2023). Dataset for: "Tuberculosis prevalence after four years of population-wide systematic TB symptom screening and universal testing and treatment for HIV in the HPTN 071 (PopART) community-randomised trial in Zambia and South Africa: findings from the TREATS study". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003517.

Schaap, A and Phiri, M (2023). Dataset for: "Factors associated with use of community-based, peer-led sexual and reproductive health services by adolescent boys and young men aged 18-24 in Lusaka, Zambia: A case control study nested in the Yathu Yathu Trial.". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003663.

Schwalb, A (2023). Data for: "Impact of micro- and macronutrient status on the incidence of tuberculosis: an examination of an African cohort initiating antiretroviral therapy". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003506.

Schwalb, A (2023). Data for: "Travel and tuberculosis in migrants". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003534.

Sharma waddington, H, Masset, E, Bick, S and Cairncross, S (2023). Data for: "Impact on childhood mortality of interventions to improve drinking water, sanitation, and hygiene (WASH) to households: Systematic review and meta-analysis". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003398.

Sharma, E (2023). Online questionnaire results for Serbian perspectives on Afghan refugee women’s maternity experiences in Serbia. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003389.

Sherratt, K, Abbott, S, Carnegie, A and Liu, Y (2023). Improving modelling for epidemic responses: reflections. [Data Collection]. Open Science Framework. https://doi.org/10.17605/OSF.IO/4JNCB

Simms, V, Chibanda, D, Abas, M and Munetsi, E (2023). A non-randomised cohort study of mental health and HIV virological suppression in people living with HIV receiving Friendship Bench lay counselling in Harare, Zimbabwe - Virological Suppression Questionnaire. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003219.

Simons, D (2023). DidDrog11/Lassa_phylogeography. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.6340162

Simons, D (2023). DidDrog11/arenavirus_hantavirus_app. [Data Collection]. Github. https://github.com/DidDrog11/arenavirus_hantavirus_app

Simons, D (2023). DidDrog11/data_for_gbif: Final version for Gigabyte. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7703228

Simons, D, Attfield, LA, Jones, KE, Watson-Jones, D and Kock, R (2023). Data from: Rodent trapping studies as an overlooked information source for understanding endemic and novel zoonotic spillover. [Data Collection]. GigaScience Journal. https://doi.org/10.15468/zr6frj

Sinnott, SJ, Wong, A and Tomlinson, LA (2023). Diagnosis codelist - arrhythmia codes (icd-10). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003251.

Sinnott, SJ, Wong, A and Tomlinson, LA (2023). Diagnosis codelist - arrhythmia codes (medcodes). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003250.

Sinnott, SJ, Wong, A and Tomlinson, LA (2023). Diagnosis codelist - diabetes codes (icd-10). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003253.

Sinnott, SJ, Wong, A and Tomlinson, LA (2023). Diagnosis codelist - diabetes codes (opcs). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003252.

Soremekun, C, Machipisa, T, Soremekun, O, Pirie, F, Oyekanmi, N, Motala, AA, Chikowore, T and Fatumo, S (2023). Multivariate GWAS analysis reveals loci associated with liver functions in continental African populations. S1 File. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0280344.s001

Soremekun, S, Källander, K, Lingam, R, Branco, AC, Batura, N, Strachan, DL, Muiambo, A, Salomao, N, Condoane, J, Benhane, F, Kasteng, F, Vassall, A, Hill, Z, ten Asbroek, G, Meek, S, Tibenderana, J and Kirkwood, B (2023). Restricted Randomisation Procedure and codes–inSCALE Mozambique. [Data Collection]. PLOS Digital Health. https://doi.org/10.1371/journal.pdig.0000235.s003

Soremekun, S, Källander, K, Lingam, R, Branco, AC, Batura, N, Strachan, DL, Muiambo, A, Salomao, N, Condoane, J, Benhane, F, Kasteng, F, Vassall, A, Hill, Z, ten Asbroek, G, Meek, S, Tibenderana, J and Kirkwood, B (2023). inSCALE data collection forms. [Data Collection]. PLOS Digital Health. https://doi.org/10.1371/journal.pdig.0000235.s002

Spadar, A, Perdigão, J, Campino, S and Clark, TG (2023). Additional file 2 of Large-scale genomic analysis of global Klebsiella pneumoniae plasmids reveals multiple simultaneous clusters of carbapenem-resistant hypervirulent strains. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.22611932.v1

Springmann, M, Kennard, H, Dalin, C and Freund, F (2023). Supplementary data file to "International food trade contributes to dietary risks and mortality at global, regional, and national levels". [Data Collection]. University of Oxford. https://doi.org/10.25446/oxford.24085362.v1

Ssemata, AS, Ndekezi, D, Kansiime, C, Bakanoma, R, Tanton, C, Nelson, KA, Hytti, L, Neema, S, Torondel, B, Seeley, J and Weiss, HA (2023). Data collection tools for: "Understanding the social and physical menstrual health environment of secondary schools in Uganda: A qualitative methods study". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003719.

Strongman, H and Carreira, H (2023). Clinical codelist - Chronic kidney disease - aurum. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003428.

Suffel, AM (2023). Eyedeet/vaccine_methods_ehr_public/. [Data Collection]. Github. https://github.com/Eyedeet/vaccine_methods_ehr_public/

Suárez-Idueta, L, Blencowe, H, Okwaraji, YB, Yargawa, J, Bradley, E, Gordon, A, Flenady, V, Paixao Cruz, ES, Barreto, ML, Lisonkova, S, Wen, Q, Velebil, P, Jírová, J, Horváth-Puhó, E, Sørensen, HT, Sakkeus, L, Abuladze, L, Yunis, KA, Bizri, AA, Barranco, A, Broeders, L, van Dijk, AE, Alyafei, F, Olukade, TO, Razaz, N, Söderling, J, Smith, LK, Draper, ES, Lowry, E, Rowland, N, Wood, R, Monteath, K, Pereyra, I, Pravia, G, Ohuma, EO and Lawn, JE (2023). Data for: "Neonatal mortality risk for vulnerable newborn types in 15 countries using 125.5 million nationwide birth outcome records, 2000–2020". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003690.

Suárez-Idueta, L, Ohuma, EO, Chang, C, Hazel, EA, Yargawa, J, Okwaraji, YB, Bradley, E, Gordon, A, Sexton, J, Lawford, H, Paixao cruz, ES, Falcão, IR, Lisonkova, S, Wen, Q, Velebil, P, Jírová, J, Horváth-Puhó, E, Sørensen, HT, Sakkeus, L, Abuladze, L, Yunis, KA, Bizri, AA, Alvarez Lopez, S, Broeders, L, van Dijk, AE, Alyafei, F, AlQubaisi, M, Razaz, N, Söderling, J, Smith, LK, Matthews, R, Lowry, E, Rowland, N, Wood, R, Monteath, K, Pereyra, I, Pravia, G, Lawn, JE and Blencowe, H (2023). Data for: "Neonatal mortality risk of large for gestational age and macrosomic live births in 15 countries including 115.6 million nationwide linked records, 2000–2020". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003666.

T

Tang, FF, Kosana, P, Jit, M, Terris-Prestholt, F, Wu, D, Ong, JJ and Tucker, JD (2023). PIF influenza costing analysis and probabilistic sensitivity analysis. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001590.s004

Tang, FF, Kosana, P, Jit, M, Terris-Prestholt, F, Wu, D, Ong, JJ and Tucker, JD (2023). PIF influenza participant questionnaire responses and donation amounts dataset. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001590.s003

Tarus, A, Msemo, G, Kamuyu, R, Shamba, D, Kirby, RP, Palamountain, KM, Gicheha, E, Kumar, MB, Powell-Jackson, T, Bohne, C, Murless-Collins, S, Liaghati-Mobarhan, S, Morgan, A, Oden, ZM, Richards-Kortum, R and Lawn, JE (2023). Devices and furniture for small and sick newborn care: systematic development of a planning and costing tool. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.6932820.v1

Tashiro, M, Sato, S and Endo, A (2023). Decreased community-acquired pneumonia coincided with rising awareness of precautions before governmental containment policy in Japan. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7891634

Tawaraishi, T, Ochida, A, Akao, Y, Itono, S, Kamaura, M, Akther, T, Shimada, M, Canan, S, Chowdhury, S, Cao, Y, Condroski, K, Engkvist, O, Francisco, A, Ghosh, S, Kaki, R, Kelly, JM, Kimura, C, Kogej, T, Nagaoka, K, Naito, A, Pairaudeau, G, Radu, C, Roberts, I, Shum, D, Watanabe, N, Xie, H, Yonezawa, S, Yoshida, O, Yoshida, R, Mowbray, C and Perry, B (2023). Collaborative Virtual Screening Identifies a 2‑Aryl-4-aminoquinazoline Series with Efficacy in an In Vivo Model of Trypanosoma cruzi Infection. [Data Collection]. ACS Publications. https://doi.org/10.1021/acs.jmedchem.2c00775.s002

Teoh, M (2023). Codelists for: "Can observational data be used to determine drug effectiveness?". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003590.

Thindwa, D and Clifford, S (2023). deusthindwa/ optimal.age.targeting.pneumo.vaccines: OptionaAgeTargetingPneumococcalVaccines. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7592904

Timire, C (2023). Data for: Coverage and effectiveness of conditional cash transfer for people with drug resistant tuberculosis in Zimbabwe. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003188.

Tomlinson, LA and Wong, A (2023). Diagnosis codelist - heart failure codes (medcodes). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003248.

Turner, RM, Band, T, Morris, TP, Fisher, DJ, Higgins, JPT, Carpenter, JR and White, IR (2023). Network meta-analysis comparing antihypertensive drugs for prevention of diabetes. [Data Collection]. University College London, London, United Kingdom. https://doi.org/10.5522/04/24084006.v1

Turner, RM, Band, T, Morris, TP, Fisher, DJ, Higgins, JPT, Carpenter, JR and White, IR (2023). Network meta-analysis comparing efficacy of 12 anti-depressants. [Data Collection]. University College London, London, United Kingdom. https://doi.org/10.5522/04/24084456.v1

Turner, RM, Band, T, Morris, TP, Fisher, DJ, Higgins, JPT, Carpenter, JR and White, IR (2023). Network meta-analysis comparing interventions for promoting smoking cessation. [Data Collection]. University College London, London, United Kingdom. https://doi.org/10.5522/04/24084318.v1

U

University of Glasgow, MRC/CSO Social and Public Health Sciences, University College London and London School of Hygiene and Tropical Medicine (2023). National Survey of Sexual Attitudes and Lifestyles COVID-19 Study, 2020-2021. [Data Collection]. UK Data Service. http://doi.org/10.5255/UKDA-SN-8865-2

Unwin, J, Challenger, J, Watson, OJ, Hellewell, J, FitzJohn, R and Sherrard-Smith, E (2023). mrc-ide/deterministic-malaria-model: nets_paper. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.7559615

V

Van Immerzeel, T, Day, LT, Kerac, M, Grijalva-Eternod, C, Diagne, M, Murungi, A, Deme/Ly, I and Diouf, S (2023). Data for: "Implementing a care pathway for small and nutritionally at-risk infants under six months of age: a multi-country stakeholder consultation". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003192.

Van Zandvoort, K and Checchi, F (2023). Shielding individuals at high risk of COVID-19: a micro-simulation study. Model and analyses. [Data Collection]. Github. https://doi.org/10.5281/zenodo.7740538

W

WOMAN-PharmacoTXA trial (2023). PharmacoTXA: Pharmacokinetics of Tranexamic Acid after oral, intramuscular or intravenous administration: a prospective, randomised, cross-over trial in healthy volunteers. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003555.

Wainaina, J, Ogero, M, Mumelo, L, Wairoto, K, Mbevi, G, Tuti, T, Mwaniki, P, Irimu, G, English, M, Aluvaala, J and The Clinical Information Network Author Group (2023). Replication Data for: Hypothermia amongst neonatal admissions in Kenya: A Retrospective Cohort Study Assessing Prevalence, Trends, Risk Factors, and its Relationship with All-Cause Neonatal Mortality. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/VDSUDE

Walton, Z (2023). Data for: "Shifting a food system conference online mitigates structural barriers to equitable participation, but hinders meaningful interpersonal connections". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003485.

Wambiya, EOA, Gourlay, AJ, Mulwa, S, Magut, F, Mthiyane, N, Orindi, B, Chimbindi, N, Kwaro, D, Shahmanesh, M, Floyd, S, Birdthistle, I and Ziraba, A (2023). Association between DREAMS and experiences of violence among AGYW followed up in 2019 by site and age group using conventional logistic regression. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001818.s005

Wambiya, EOA, Gourlay, AJ, Mulwa, S, Magut, F, Mthiyane, N, Orindi, B, Chimbindi, N, Kwaro, D, Shahmanesh, M, Floyd, S, Birdthistle, I and Ziraba, A (2023). Association between invitation to DREAMS and any experience of violence among AGYW in Gem using conventional logistic regression. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001818.s007

Wambiya, EOA, Gourlay, AJ, Mulwa, S, Magut, F, Mthiyane, N, Orindi, B, Chimbindi, N, Kwaro, D, Shahmanesh, M, Floyd, S, Birdthistle, I and Ziraba, A (2023). Association between invitation to DREAMS and any experience of violence among AGYW in Nairobi using conventional logistic regression. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001818.s006

Wambiya, EOA, Gourlay, AJ, Mulwa, S, Magut, F, Mthiyane, N, Orindi, B, Chimbindi, N, Kwaro, D, Shahmanesh, M, Floyd, S, Birdthistle, I and Ziraba, A (2023). Association between invitation to DREAMS and any experience of violence among AGYW in uMkhanyakude using conventional logistic regression. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001818.s008

Wambiya, EOA, Gourlay, AJ, Mulwa, S, Magut, F, Mthiyane, N, Orindi, B, Chimbindi, N, Kwaro, D, Shahmanesh, M, Floyd, S, Birdthistle, I and Ziraba, A (2023). Association between invitation to DREAMS and emotional violence among AGYW in Gem using conventional logistic regression, 13–22 year-olds. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001818.s013

Wambiya, EOA, Gourlay, AJ, Mulwa, S, Magut, F, Mthiyane, N, Orindi, B, Chimbindi, N, Kwaro, D, Shahmanesh, M, Floyd, S, Birdthistle, I and Ziraba, A (2023). Association between invitation to DREAMS and emotional violence among AGYW in Nairobi using conventional logistic regression, 13–22 year-olds. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001818.s012

Wambiya, EOA, Gourlay, AJ, Mulwa, S, Magut, F, Mthiyane, N, Orindi, B, Chimbindi, N, Kwaro, D, Shahmanesh, M, Floyd, S, Birdthistle, I and Ziraba, A (2023). Association between invitation to DREAMS and emotional violence among AGYW in uMkhanyakude using conventional logistic regression, 13–22 year-olds. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001818.s014

Wambiya, EOA, Gourlay, AJ, Mulwa, S, Magut, F, Mthiyane, N, Orindi, B, Chimbindi, N, Kwaro, D, Shahmanesh, M, Floyd, S, Birdthistle, I and Ziraba, A (2023). Association between invitation to DREAMS and physical violence among AGYW in Gem using conventional logistic regression, 13–22 year-olds. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001818.s010

Wambiya, EOA, Gourlay, AJ, Mulwa, S, Magut, F, Mthiyane, N, Orindi, B, Chimbindi, N, Kwaro, D, Shahmanesh, M, Floyd, S, Birdthistle, I and Ziraba, A (2023). Association between invitation to DREAMS and physical violence among AGYW in Nairobi using conventional logistic regression, 13–22 year-olds. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001818.s009

Wambiya, EOA, Gourlay, AJ, Mulwa, S, Magut, F, Mthiyane, N, Orindi, B, Chimbindi, N, Kwaro, D, Shahmanesh, M, Floyd, S, Birdthistle, I and Ziraba, A (2023). Association between invitation to DREAMS and sexual violence among AGYW in Gem using conventional logistic regression, 13–22 year-olds. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001818.s016

Wambiya, EOA, Gourlay, AJ, Mulwa, S, Magut, F, Mthiyane, N, Orindi, B, Chimbindi, N, Kwaro, D, Shahmanesh, M, Floyd, S, Birdthistle, I and Ziraba, A (2023). Association between invitation to DREAMS and sexual violence among AGYW in Nairobi using conventional logistic regression, 13–22 year-olds. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001818.s015

Wambiya, EOA, Gourlay, AJ, Mulwa, S, Magut, F, Mthiyane, N, Orindi, B, Chimbindi, N, Kwaro, D, Shahmanesh, M, Floyd, S, Birdthistle, I and Ziraba, A (2023). Association between invitation to DREAMS and sexual violence among AGYW in uMkhanyakude using conventional logistic regression, 13–22 year-olds. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001818.s017

Wambiya, EOA, Gourlay, AJ, Mulwa, S, Magut, F, Mthiyane, N, Orindi, B, Chimbindi, N, Kwaro, D, Shahmanesh, M, Floyd, S, Birdthistle, I and Ziraba, A (2023). Characteristics of DREAMS beneficiaries and non-beneficiaries at time of cohort enrolment by invitation to DREAMS in Nairobi, Gem and uMkhanyakude. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001818.s004

Wambiya, EOA, Gourlay, AJ, Mulwa, S, Magut, F, Mthiyane, N, Orindi, B, Chimbindi, N, Kwaro, D, Shahmanesh, M, Floyd, S, Birdthistle, I and Ziraba, A (2023). Proportions of AGYW retained in the study vs lost to follow up by 2019, by AGYW characteristics in Gem. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001818.s002

Wambiya, EOA, Gourlay, AJ, Mulwa, S, Magut, F, Mthiyane, N, Orindi, B, Chimbindi, N, Kwaro, D, Shahmanesh, M, Floyd, S, Birdthistle, I and Ziraba, A (2023). Proportions of AGYW retained in the study vs lost to follow up by 2019, by AGYW characteristics in Nairobi. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001818.s001

Wambiya, EOA, Gourlay, AJ, Mulwa, S, Magut, F, Mthiyane, N, Orindi, B, Chimbindi, N, Kwaro, D, Shahmanesh, M, Floyd, S, Birdthistle, I and Ziraba, A (2023). Sensitivity analyses on the effect of DREAMS on experiences of violence among AGYW. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001818.s018

Wambiya, EOA, Gourlay, A, Mulwa, S, Magut, F, Mthiyane, N, Orindi, B, Chimbindi, N, Kwaro, D, Shahmanesh, M, Floyd, S, Birdthistle, I and Ziraba, A (2023). Association between invitation to DREAMS and physical violence among AGYW in uMkhanyakude using conventional logistic regression, 13–22 year-olds. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001818.s011

Wambiya, EOA, Gourlay, A, Mulwa, S, Magut, F, Mthiyane, N, Orindi, B, Chimbindi, N, Kwaro, D, Shahmanesh, M, Floyd, S, Birdthistle, I and Ziraba, A (2023). Proportions of AGYW retained in the study vs lost to follow up by 2019, by AGYW characteristics in uMkhanyakude. [Data Collection]. PLOS Global Public Health. https://doi.org/10.1371/journal.pgph.0001818.s003

Wang, L (2023). linfeng-wang/GMM4TB. [Data Collection]. Github. https://github.com/linfeng-wang/GMM4TB

Wang, Z, Wong, A, Matthewman, J, Warren-Gash, C and Herrett, E (2023). Code lists for "Association between mortality and warfarin comparing with direct oral anticoagulants: a population-based cohort study". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003652.

Wariri, O (2023). drwariri/Mapping-the-timeliness-of-routine-childhood-vaccination-in-The-Gambia-a-spatial-modelling-study. [Data Collection]. Github. https://github.com/drwariri/Mapping-the-timeliness-of-routine-childhood-vaccination-in-The-Gambia-a-spatial-modelling-study

Warren-Gash, C, Cadogan, S and Muzambi, R (2023). Clinical codelist - CPRD Gold - Mild cognitive impairment. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003500.

Waterlow, N (2023). NaomiWaterlow/markov_model: V1.0.0. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.8382636

Watson, J (2023). Data set from a proof-of-concept trial of an intervention designed to improve food hygiene behaviours among caregivers of young children living in low-income areas of Nairobi, Kenya. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003671.

Watson, J (2023). Dataset for: Results of a cluster-randomised controlled equivalence trial of the Surprise Soap hand washing intervention among older children living in a refugee settlement in Sudan. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003563.

White, J, Hawkins, J, Murphy, S, Towson, J, Cannings-John, R, Madden, K, Rona, C, Hickman, M, Moore, L, Bonell, C, Parrott, S, Zammit, S and Hines, L (2023). The FRANK friends study: Data. [Data Collection]. Cardiff University, Cardiff, Wales. https://doi.org/10.17035/d.2023.0244798057

Wong, A and Tomlinson, LA (2023). Diagnosis codelist - heart failure codes (icd-10). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003249.

Wong, A and Tomlinson, LA (2023). Diagnosis codelist - ischaemic heart disease codes (icd-10). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003257.

Wong, A and Tomlinson, LA (2023). Diagnosis codelist - ischaemic heart disease codes (medcodes). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003256.

Wong, A and Tomlinson, LA (2023). Diagnosis codelist - myocardial infarction codes (icd-10). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003247.

Wong, A and Tomlinson, LA (2023). Diagnosis codelist - myocardial infarction codes (medcodes). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003246.

Wong, A and Tomlinson, LA (2023). Diagnosis codelist - peripheral arterial disease codes (icd-10). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003259.

Wong, A and Tomlinson, LA (2023). Diagnosis codelist - peripheral arterial disease codes (medcodes). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003258.

Wong, A and Tomlinson, LA (2023). Diagnosis codelist - stroke/transient ischaemic attack codes (icd-10). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003255.

Wong, A and Tomlinson, LA (2023). Diagnosis codelist - stroke/transient ischaemic attack codes (medcodes). [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003254.

Wutor, BM, Osei, I, Galega, LB, Ezeani, E, Adefila, W, Hossain, I, Sarwar, G and Mackenzie, GA (2023). Verbal autopsy analysis of childhood deaths in rural Gambia: Minimal data set V 1.0. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0277377.s003

Y

Yang, M, Daftary, A, Mendelsohn, JB, Ryan, M, Bullock, S, Bisaillon, L, Bourne, A, Lebouché, B, Thompson, T and Calzavara, L (2023). Appendix: Positive plus one study interview guides. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0281301.

Z

Zheng, B (2023). Anaphylaxis events following COVID-19 antiviral and neutralising monoclonal antibody treatment for non-hospitalised patients. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.8144334

Zheng, B and lshbz1 (2023). opensafely/Paxlovid-and-sotrovimab. [Data Collection]. Github. https://github.com/opensafely/Paxlovid-and-sotrovimab

Zishiri, V, Conserve, DF, Haile, ZT, Corbett, EL, Hatzold, K, Meyer-Rath, G, Matsimela, K, Sande, L, D'elbee, M, Terris-Prestholt, F, Johnson, CC, Chidarikire, T, Venter, F and Majam, M (2023). Additional file 1 of Secondary distribution of HIV self-test kits by HIV index and antenatal care clients: implementation and costing results from the STAR Initiative in South Africa. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.23281113.v1

Zishiri, V, Conserve, DF, Haile, ZT, Corbett, EL, Hatzold, K, Meyer-Rath, G, Matsimela, K, Sande, L, d'Elbee, M, Terris-Prestholt, F, Johnson, CC, Chidarikire, T, Venter, F and Majam, M (2023). Additional file 2 of Secondary distribution of HIV self-test kits by HIV index and antenatal care clients: implementation and costing results from the STAR Initiative in South Africa. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.23281116.v1

Záhonová, K, Low, RS, Warren, CJ, Cantoni, D, Herman, EK, Yiangou, L, Ribeiro, CA, Phanprasert, Y, Brown, IR, Rueckert, S, Baker, NL, Tachezy, J, Betts, EL, Gentekaki, E, van der Giezen, M, Clark, CG, Jackson, AP, Dacks, JB and Tsaousis, AD (2023). Evolutionary analysis of cellular reduction and anaerobicity in the hyper-prevalent gut microbe Blastocystis. [Data Collection]. Current Biology. https://doi.org/10.1016/j.cub.2023.05.025