Suárez-Idueta, L, Blencowe, H, Okwaraji, YB, Yargawa, J, Bradley, E, Gordon, A, Flenady, V, Paixao Cruz, ES, Barreto, ML, Lisonkova, S, Wen, Q, Velebil, P, Jírová, J, Horváth-Puhó, E, Sørensen, HT, Sakkeus, L, Abuladze, L, Yunis, KA, Bizri, AA, Barranco, A, Broeders, L, van Dijk, AE, Alyafei, F, Olukade, TO, Razaz, N, Söderling, J, Smith, LK, Draper, ES, Lowry, E, Rowland, N, Wood, R, Monteath, K, Pereyra, I, Pravia, G, Ohuma, EO and Lawn, JE (2023). Data for: "Neonatal mortality risk for vulnerable newborn types in 15 countries using 125.5 million nationwide birth outcome records, 2000–2020". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003690.

Suárez-Idueta, L, Ohuma, EO, Chang, C, Hazel, EA, Yargawa, J, Okwaraji, YB, Bradley, E, Gordon, A, Sexton, J, Lawford, H, Paixao cruz, ES, Falcão, IR, Lisonkova, S, Wen, Q, Velebil, P, Jírová, J, Horváth-Puhó, E, Sørensen, HT, Sakkeus, L, Abuladze, L, Yunis, KA, Bizri, AA, Alvarez Lopez, S, Broeders, L, van Dijk, AE, Alyafei, F, AlQubaisi, M, Razaz, N, Söderling, J, Smith, LK, Matthews, R, Lowry, E, Rowland, N, Wood, R, Monteath, K, Pereyra, I, Pravia, G, Lawn, JE and Blencowe, H (2023). Data for: "Neonatal mortality risk of large for gestational age and macrosomic live births in 15 countries including 115.6 million nationwide linked records, 2000–2020". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00003666.

Racané, L, Ptiček, L, Kostrun, S, Raić-Malić, S, Taylor, MC, Delves, M, Alsford, S, Olmo, F, Francisco, AF and Kelly, JM (2023). Bis-6-amidino-benzothiazole Derivative that Cures Experimental Stage 1 African Trypanosomiasis with a Single Dose. [Data Collection]. ACS Publications. https://doi.org/10.1021/acs.jmedchem.3c01051.s002

Ramaprasad, A, Burda, P, Koussis, K, Thomas, JA, Pietsch, E, Calvani, E, Howell, SA, MacRae, JI, Snijders, AP, Gilberger, T and Blackman, MJ (2023). Raw peak intensities of various lipid species measured before and after egress in RAP-treated (+RAP) and mock-treated (-RAP) LCAT:2loxPint parasites. [Data Collection]. PLOS Pathogens. https://doi.org/10.1371/journal.ppat.1011449.s009

Cleghorn, LAT, Wall, RJ, Albrecht, S, MacGowan, SA, Norval, S, De Rycker, M, Woodland, A, Spinks, D, Thompson, S, Patterson, S, Corpas Lopez, V, Dey, G, Collie, IT, Hallyburton, I, Kime, R, Simeons, FRC, Stojanovski, L, Frearson, JA, Wyatt, PG, Read, KD, Gilbert, IH and Wyllie, S (2023). Development of a 2,4-Diaminothiazole Series for the Treatment of Human African Trypanosomiasis Highlights the Importance of Static–Cidal Screening of Analogues. [Data Collection]. ACS Publications. https://doi.org/10.1021/acs.jmedchem.3c00509.s002

Marlais, T, Bickford-Smith, J, Talavera-López, C, Le, H, Chowdhury, F and Miles, MA (2023). Candidate coproantigen sequences in fasta format. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0010777.s006

Marlais, T, Bickford-Smith, J, Talavera-López, C, Le, H, Chowdhury, F and Miles, MA (2023). Predicted epitopes in S. stercoralis proteins using BepiPred and bcepred. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0010777.s005

Marlais, T, Bickford-Smith, J, Talavera-López, C, Le, H, Chowdhury, F and Miles, MA (2023). Protein identity, features and gene expression levels of S. stercoralis orthologues of S. ratti E/S proteomic data. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0010777.s004

Marlais, T, Bickford-Smith, J, Talavera-López, C, Le, H, Chowdhury, F and Miles, MA (2023). S. stercoralis genes (n = 328) differentially expressed in gut-dwelling (dark blue) versus non-gut-dwelling (light blue) life stages of the nematode with those containing predicted epitopes indicated. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0010777.s002

Foster-Nyarko, E, Holt, KE, Cottingham, H, Wick, R, Judd, LM, Lam, M, Wyres, KL, Stanton, T, Tsang, KK, David, S, Bridel, S, Palma, F, Aanensen, DM and Brisse, S (2023). Nanopore-only assemblies for genomic surveillance of the global priority drug-resistant pathogen, Klebsiella pneumoniae. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.19745608.v2

Soremekun, C, Machipisa, T, Soremekun, O, Pirie, F, Oyekanmi, N, Motala, AA, Chikowore, T and Fatumo, S (2023). Multivariate GWAS analysis reveals loci associated with liver functions in continental African populations. S1 File. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0280344.s001

Ashall, J, Shah, S, Biggs, JR, Chang, JR, Jafari, Y, Brady, OJ, Mai, HK, Lien, LT, Do Thai, H, Nguyen, HAT, Anh, DD, Iwasaki, C, Kitamura, N, Van Loock, M, Herrera-Taracena, G, Rasschaert, F, Van Wesenbeeck, L, Yoshida, L, Hafalla, JCR, Hue, S and Hibberd, ML (2023). Dengue virus type 4 isolate DET-P-0428-1 polyprotein (POLY) gene, complete cds; and sfRNA2 lncRNA gene, partial sequence. [Data Collection]. National Center for Biotechnology Information. https://www.ncbi.nlm.nih.gov/nuccore/OQ427062

Ashall, J, Shah, S, Biggs, JR, Chang, JR, Jafari, Y, Brady, OJ, Mai, HK, Lien, LT, Do Thai, H, Nguyen, HAT, Anh, DD, Iwasaki, C, Kitamura, N, Van Loock, M, Herrera-Taracena, G, Rasschaert, F, Van Wesenbeeck, L, Yoshida, L, Hafalla, JCR, Hue, S and Hibberd, ML (2023). Dengue virus type I isolate DEN-P-1098-1 polyprotein (POLY) gene, partial cds. [Data Collection]. National Center for Biotechnology Information. https://www.ncbi.nlm.nih.gov/nuccore/OQ426566.1/

Tawaraishi, T, Ochida, A, Akao, Y, Itono, S, Kamaura, M, Akther, T, Shimada, M, Canan, S, Chowdhury, S, Cao, Y, Condroski, K, Engkvist, O, Francisco, A, Ghosh, S, Kaki, R, Kelly, JM, Kimura, C, Kogej, T, Nagaoka, K, Naito, A, Pairaudeau, G, Radu, C, Roberts, I, Shum, D, Watanabe, N, Xie, H, Yonezawa, S, Yoshida, O, Yoshida, R, Mowbray, C and Perry, B (2023). Collaborative Virtual Screening Identifies a 2‑Aryl-4-aminoquinazoline Series with Efficacy in an In Vivo Model of Trypanosoma cruzi Infection. [Data Collection]. ACS Publications. https://doi.org/10.1021/acs.jmedchem.2c00775.s002

Verboven, L, Phelan, J, Heupink, TH and Van Rie, A (2022). TBProfiler for automated calling of the association with drug resistance of variants in Mycobacterium tuberculosis. S1 File. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0279644.s002

Verboven, L, Phelan, J, Heupink, TH and Van Rie, A (2022). TBProfiler for automated calling of the association with drug resistance of variants in Mycobacterium tuberculosis. S2 File. [Data Collection]. Github. https://doi.org/10.1371/journal.pone.0279644.s003

London School of Hygiene & Tropical Medicine (2022). PRJEB57331. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/browser/view/PRJEB57331

Meier, S, Seddon, JA, Maasdorp, E, Kleynhans, L, du Plessis, N, Loxton, AG, Malherbe, ST, Zak, DE, Thompson, E, Duffy, FJ, Kaufmann, SHE, Ottenhoff, THM, Scriba, TJ, Suliman, S, Sutherland, JS, Winter, J, Kuivaniemi, H, Walzl, G and Tromp, G (2022). PET scores for the catalysis study specimens. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0278295.s001

London School of Hygiene & Tropical Medicine (2022). Plasmodium falciparum sequencing Bijagos Archipelago 2018. [Data Collection]. NIH National Library of Medicine. https://www.ncbi.nlm.nih.gov/bioproject/905557

Elliott, HR, Burrows, K, Min, JL, Tillin, T, Mason, D, Wright, J, Santorelli, G, Davey Smith, G, Lawlor, DA, Hughes, AD, Chaturvedi, N and Relton, CL (2022). Additional file 4 of Characterisation of ethnic differences in DNA methylation between UK-resident South Asians and Europeans. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.21343091.v1

London School of Hygiene & Tropical Medicine (2022). Environmental detection of vector larvae. [Data Collection]. National Center for Biotechnology Information. https://www.ncbi.nlm.nih.gov/bioproject/PRJEB56414

Gilchrist, JJ, Auckland, K, Parks, T, Mentzer, AJ, Goldblatt, L, Naranbhai, V, Band, G, Rockett, KA, Toure, OB, Konate, S, Sissoko, S, Djimdé, AA, Thera, MA, Doumbo, OK, Sow, S, Floyd, S, Pönnighaus, JM, Warndorff, DK, Crampin, AC, Fine, PEM, Fairfax, BP and Hill, AVS (2022). 99% credible set SNPs for leprosy association at chromosome 10q24. [Data Collection]. PLOS Pathogens. https://doi.org/10.1371/journal.ppat.1010312.s016

Gilchrist, JJ, Auckland, K, Parks, T, Mentzer, AJ, Goldblatt, L, Naranbhai, V, Band, G, Rockett, KA, Toure, OB, Konate, S, Sissoko, S, Djimdé, AA, Thera, MA, Doumbo, OK, Sow, S, Floyd, S, Pönnighaus, JM, Warndorff, DK, Crampin, AC, Fine, PEM, Fairfax, BP and Hill, AVS (2022). Analysis of pleiotropy at the leprosy association at chromosome 10q24. [Data Collection]. PLOS Pathogens. https://doi.org/10.1371/journal.ppat.1010312.s018

Gilchrist, JJ, Auckland, K, Parks, T, Mentzer, AJ, Goldblatt, L, Naranbhai, V, Band, G, Rockett, KA, Toure, OB, Konate, S, Sissoko, S, Djimdé, AA, Thera, MA, Doumbo, OK, Sow, S, Floyd, S, Pönnighaus, JM, Warndorff, DK, Crampin, AC, Fine, PEM, Fairfax, BP and Hill, AVS (2022). Association statistics for imputed classical HLA alleles and leprosy risk in Malawi and Mali. [Data Collection]. PLOS Pathogens. https://doi.org/10.1371/journal.ppat.1010312.s022

Gilchrist, JJ, Auckland, K, Parks, T, Mentzer, AJ, Goldblatt, L, Naranbhai, V, Band, G, Rockett, KA, Toure, OB, Konate, S, Sissoko, S, Djimdé, AA, Thera, MA, Doumbo, OK, Sow, S, Floyd, S, Pönnighaus, JM, Warndorff, DK, Crampin, AC, Fine, PEM, Fairfax, BP and Hill, AVS (2022). Chromatin state at chromosome 10q24. [Data Collection]. PLOS Pathogens. https://doi.org/10.1371/journal.ppat.1010312.s020

Gilchrist, JJ, Auckland, K, Parks, T, Mentzer, AJ, Goldblatt, L, Naranbhai, V, Band, G, Rockett, KA, Toure, OB, Konate, S, Sissoko, S, Djimdé, AA, Thera, MA, Doumbo, OK, Sow, S, Floyd, S, Pönnighaus, JM, Warndorff, DK, Crampin, AC, Fine, PEM, Fairfax, BP and Hill, AVS (2022). Genome-wide association study of leprosy in Malawi and Mali. S2 Table. [Data Collection]. PLOS Pathogens. https://doi.org/10.1371/journal.ppat.1010312.s015

Gilchrist, JJ, Auckland, K, Parks, T, Mentzer, AJ, Goldblatt, L, Naranbhai, V, Band, G, Rockett, KA, Toure, OB, Konate, S, Sissoko, S, Djimdé, AA, Thera, MA, Doumbo, OK, Sow, S, Floyd, S, Pönnighaus, JM, Warndorff, DK, Crampin, AC, Fine, PEM, Fairfax, BP and Hill, AVS (2022). Regulatory function at the chromosome 10q24 leprosy association. [Data Collection]. PLOS Pathogens. https://doi.org/10.1371/journal.ppat.1010312.s021

Gilchrist, JJ, Auckland, K, Parks, T, Mentzer, AJ, Goldblatt, L, Naranbhai, V, Band, G, Rockett, KA, Toure, OB, Konate, S, Sissoko, S, Djimdé, AA, Thera, MA, Doumbo, OK, Sow, S, Floyd, S, Pönnighaus, JM, Warndorff, DK, Crampin, AC, Fine, PEM, Fairfax, BP and Hill, AVS (2022). Replication of previously-published leprosy associated non-HLA SNPs in Malawi and Mali. [Data Collection]. PLOS Pathogens. https://doi.org/10.1371/journal.ppat.1010312.s023

Gilchrist, JJ, Auckland, K, Parks, T, Mentzer, AJ, Goldblatt, L, Naranbhai, V, Band, G, Rockett, KA, Toure, OB, Konate, S, Sissoko, S, Djimdé, AA, Thera, MA, Doumbo, OK, Sow, S, Floyd, S, Pönnighaus, JM, Warndorff, DK, Crampin, AC, Fine, PEM, Fairfax, BP and Hill, AVS (2022). Replication of previously-published leprosy associated non-HLA SNPs in Malawi and Mali stratified by multibacillary and paucibacillary disease. [Data Collection]. PLOS Pathogens. https://doi.org/10.1371/journal.ppat.1010312.s024

Gilchrist, JJ, Auckland, K, Parks, T, Mentzer, AJ, Goldblatt, L, Naranbhai, V, Band, G, Rockett, KA, Toure, OB, Konate, S, Sissoko, S, Djimdé, AA, Thera, MA, Doumbo, OK, Sow, S, Floyd, S, Pönnighaus, JM, Warndorff, DK, Crampin, AC, Fine, PEM, Fairfax, BP and Hill, AVS (2022). SNP quality control summary in Malawi and Mali. [Data Collection]. PLOS Pathogens. https://doi.org/10.1371/journal.ppat.1010312.s026

Gilchrist, JJ, Auckland, K, Parks, T, Mentzer, AJ, Goldblatt, L, Naranbhai, V, Band, G, Rockett, KA, Toure, OB, Konate, S, Sissoko, S, Djimdé, AA, Thera, MA, Doumbo, OK, Sow, S, Floyd, S, Pönnighaus, JM, Warndorff, DK, Crampin, AC, Fine, PEM, Fairfax, BP and Hill, AVS (2022). Sample quality control summary in Malawi and Mali. [Data Collection]. PLOS Pathogens. https://doi.org/10.1371/journal.ppat.1010312.s025

Gilchrist, JJ, Auckland, K, Parks, T, Mentzer, AJ, Goldblatt, L, Naranbhai, V, Band, G, Rockett, KA, Toure, OB, Konate, S, Sissoko, S, Djimdé, AA, Thera, MA, Doumbo, OK, Sow, S, Floyd, S, Pönnighaus, JM, Warndorff, DK, Crampin, AC, Fine, PEM, Fairfax, BP and Hill, AVS (2022). Selection signatures at chromosome 10q24. [Data Collection]. PLOS Pathogens. https://doi.org/10.1371/journal.ppat.1010312.s019

Gilchrist, JJ, Auckland, K, Parks, T, Mentzer, AJ, Goldblatt, L, Naranbhai, V, Band, G, Rockett, KA, Toure, OB, Konate, S, Sissoko, S, Djimdé, AA, Thera, MA, Doumbo, OK, Sow, S, Floyd, S, Pönnighaus, JM, Warndorff, DK, Crampin, AC, Fine, PEM, Fairfax, BP and Hill, AVS (2022). Study populations and leprosy association statistics at rs2015583 in the Chinese replication analysis. [Data Collection]. PLOS Pathogens. https://doi.org/10.1371/journal.ppat.1010312.s017

Ardissino, M, Slob, EAW, Rajasundaram, S, Reddy, RK, Woolf, B, Girling, J, Johnson, MR, Ng, FS and Gill, D (2022). Additional file 1 of Safety of beta-blocker and calcium channel blocker antihypertensive drugs in pregnancy: a Mendelian randomization study. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.20962281.v1

Cotten, M (2022). mlcotten13/Measles_primers. [Data Collection]. Github. https://github.com/mlcotten13/Measles_primers

Uganda Medical Informatics Centre (2022). APCDR Uganda GWAS: Genome-wide sequence variation and susceptibility loci for cardiometabolic traits in a sub-Saharan African population (UGWAS component). [Data Collection]. European Genome-phenome Archive. https://ega-archive.org/studies/EGAS00001001558

Patel, A, Nofal, SD, Blackman, MJ and Baker, DA (2022). Supplementary information, CDC50 orthologues in Plasmodium falciparum have distinct roles in merozoite egress and trophozoite maturation. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.6619340

Quek, S, Cerdeira, L, Jeffries, CL, Tomlinson, S, Walker, T, Hughes, GL and Heinz, E (2022). Wolbachia endosymbionts in two Anopheles species indicates independent acquisitions and lack of prophage elements. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.19576432.v1

Shen, X, Caramaschi, D, Adams, MJ, Walker, RM, Min, JL, Kwong, A, Hemani, G, Barbu, MC, Whalley, HC, Harris, SE, Deary, IJ, Morris, SW, Cox, SR, Relton, CL, Marioni, RE, Evans, KL and McIntosh, AM (2022). Additional file 3 of DNA methylome-wide association study of genetic risk for depression implicates antigen processing and immune responses. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.19470515.v1

Gilchrist, JJ, Auckland, K, Parks, T, Mentzer, AJ, Goldblatt, L, Naranbhai, V, Band, G, Rockett, KA, Toure, OB, Konate, S, Sissoko, S, Djimdé, AA, Thera, MA, Doumbo, OK, Sow, S, Floyd, S, Pönnighaus, JM, Warndorff, DK, Crampin, AC, Fine, PEM, Fairfax, BP and Hill, AVS (2022). Leprosy association statistics for suggestive associations in Malawi. S1 Table. [Data Collection]. PLOS Pathogens. https://doi.org/10.1371/journal.ppat.1010312.s014

Langdon, RJ, Yousefi, P, Relton, CL and Suderman, MJ (2021). Additional file 4 of Epigenetic modelling of former, current and never smokers. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.17037810.v1

Prior, KF, Middleton, B, Owolabi, AT, Westwood, ML, Holland, J, O'Donnell, AJ, Blackman, MJ, Skene, DJ and Reece, SE (2021). Blood glucose concentration time series in mice infected with malaria parasites. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14912709.v2

Gröschel, MI, Owens, M, Freschi, L, Vargas, R, Marin, MG, Phelan, J, Iqbal, Z, Dixit, A and Farhat, MR (2021). Additional file 1 of GenTB: A user-friendly genome-based predictor for tuberculosis resistance powered by machine learning. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.16544185.v1

Matos, GM, Lewis, MD, Talavera-López, C, Yeo, M, Grisard, EC, Messenger, LA, Miles, MA and Andersson, B (2021). Comparative genomic analyses of Trypanosoma cruzi experimental hybrids. [Data Collection]. NCBI BioProject. https://www.ncbi.nlm.nih.gov/bioproject/PRJNA748998

Wyres, KL, Hawkey, J, Mirčeta, M, Judd, LM, Wick, RR, Gorrie, CL, Pratt, NF, Garlick, JS, Watson, KM, Pilcher, DV, McGloughlin, SA, Abbott, IJ, Macesic, N, Spelman, DW, Jenney, AWJ and Holt, KE (2021). Additional file 2 of Genomic surveillance of antimicrobial resistant bacterial colonisation and infection in intensive care patients. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14984870.v1

Torraca, V, Sommer, F, In 't Veld, AE, Willemse, J and Meijer, AH (2021). RNAseq expression analysis of FACS-sorted macrophages from cxcr3.2 mutant and wt zebrafish larvae. [Data Collection]. NCBI Gene Expression Omnibus. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE149942

Prior, KF, Middleton, B, Owolabi, AT, Westwood, ML, Holland, J, O'Donnell, AJ, Blackman, MJ, Skene, DJ and Reece, SE (2021). Plasmodium chabaudi genotype DK parasite stages during time series. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14842695.v1

Prior, KF, Middleton, B, Owolabi, AT, Westwood, ML, Holland, J, O'Donnell, AJ, Blackman, MJ, Skene, DJ and Reece, SE (2021). Plasmodium schizont densities in culture grown with and without isoleucine, as well as isoleucine starvation for different durations of time. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14842716.v1

Prior, KF, Middleton, B, Owolabi, AT, Westwood, ML, Holland, J, O'Donnell, AJ, Blackman, MJ, Skene, DJ and Reece, SE (2021). Plasmodium schizont proportion in culture grown with and without isoleucine. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14842713.v1

Prior, KF, Middleton, B, Owolabi, AT, Westwood, ML, Holland, J, O'Donnell, AJ, Blackman, MJ, Skene, DJ and Reece, SE (2021). Targeted metabolomics on malaria-infected mouse blood. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14842638.v1

Hamid-Adiamoh, M, Nwakanma, D, Assogba, SB, Ndiath, MO, D'Alessandro, U, Afrane, YA and Amambua-Ngwa, A (2021). Overall data including separate worksheets for genotypic resistance and species genotypes; host blood meal and sporozoite positivity data. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0241023.s001

Fennell, TG, Blackwell, GA, Thomson, NR and Dorman, MJ (2021). gbpA and chiA genes are not uniformly distributed amongst diverse Vibrio cholerae. [Data Collection]. Microbiology Society. https://doi.org/10.6084/m9.figshare.14398688.v1

London School of Hygiene & Tropical Medicine (2021). Atypical Salmonella: Invasive atypical non-typhoidal Salmonella serovars in The Gambia. [Data Collection]. National Center for Biotechnology Information. https://www.ncbi.nlm.nih.gov/bioproject/715881

Gliddon, HD, Kaforou, M, Alikian, M, Habgood-Coote, D, Zhou, C, Oni, T, Anderson, ST, Brent, AJ, Crampin, AC, Eley, B, Heyderman, R, Kern, F, Langford, PR, Ottenhoff, THM, Hibberd, ML, French, N, Wright, VJ, Dockrell, HM, Coin, LJ, Wilkinson, RJ and Levin, M (2021). Identification of Reduced Host Transcriptomic Signatures for Tuberculosis Disease and Digital PCR-Based Validation and Quantification. [Data Collection]. Frontiers in Immunology. https://doi.org/10.3389/fimmu.2021.637164.s001

Tadesse, FG, Ashine, T, Teka, H, Esayas, E, Messenger, LA, Chali, W, Meerstein-Kessel, L, Walker, T, Wolde Behaksra, S, Lanke, K, Heutink, R, Jeffries, CL, Mekonnen, DA, Hailemeskel, E, Tebeje, SK, Tafesse, T, Gashaw, A, Tsegaye, T, Emiru, T, Kigozi, S, Bogale, EA, Yohannes, G, Kedir, S, Shumie, G, Sabir, SA, Mumba, P, Dengela, D, Kolaczinski, JH, Wilson, A, Churcher, TS, Chibsa, S, Murphy, M, Balkew, M, Irish, S, Drakeley, C, Gadisa, E and Bousema, T (2021). Anopheles stephensi mosquitoes as vectors of Plasmodium vivax and falciparum, Horn of Africa, 2019. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.gf1vhhmnt

Snetselaar, J, Rowland, M, Manunda, B, Kisengwa, E, Small, G, Malone, D, Mosha, F and Kirby, M (2021). Experimental data of two IRS hut trials with broflanilide 50WP conducted in Moshi, Tanzania. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001948.

Russell, M, NatCen Social Research, London School of Hygiene & Tropical Medicine and Senior, M (2021). National Survey of Sexual Attitudes and Lifestyles, 2010-2012: Secure Access. [Data Collection]. UK Data Service, Colchester, Essex, United Kingdom. http://doi.org/10.5255/UKDA-SN-8178-1

Robinson, N, Brown, H, Antoun, E, Godfrey, KM, Hanson, MA, Lillycrop, KA, Crozier, SR, Murray, R, Pearce, MS, Relton, CL, Albani, V and McKay, JA (2021). Additional file 3 of Childhood DNA methylation as a marker of early life rapid weight gain and subsequent overweight. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.13565700.v1

Labadie, T and Roy, P (2020). A non enveloped arbovirus released in lysosome-derived extracellular vesicles induces super infection exclusion. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.13066910.v1

McKenna, A, Ijaz, UZ, Kelly, C, Linton, M, Sloan, WT, Green, BD, Lavery, U, Dorrell, N, Wren, BW, Richmond, A, Corcionivoschi, N and Gundogdu, O (2020). Additional file 11 of Impact of industrial production system parameters on chicken microbiomes: mechanisms to improve performance and reduce Campylobacter. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.12936381.v1

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Kambiré, D, Soeters, HM, Ouédraogo-Traoré, R, Medah, I, Sangare, L, Yaméogo, I, Sawadogo, G, Ouédraogo, A, Hema-Ouangraoua, S, McGee, L, Srinivasan, V, Aké, F, Congo-Ouédraogo, M, Sanou, S, Ky Ba, A, Novak, RT and Van Beneden, C (2016). Nationwide Trends in Bacterial Meningitis before the Introduction of 13-Valent Pneumococcal Conjugate Vaccine—Burkina Faso, 2011–2013. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0166384

Martinón-Torres, F, Png, E, Khor, CC, Davila, S, Wright, VJ, Sim, KS, Vega, A, Fachal, L, Inwald, D, Nadel, S, Carrol, ED, Martinón-Torres, N, Alonso, SM, Carracedo, A, Morteruel, E, López-Bayón, J, Torre, AC, Monge, CC, de Aguilar, PAG, Torné, EE, Martínez-Padilla, MdC, Martinón-Sánchez, JM, Levin, M, Hibberd, ML and Salas, A (2016). Natural resistance to Meningococcal Disease related to CFH loci: Meta-analysis of genome-wide association studies. [Data Collection]. Scientific Reports. https://doi.org/10.1038/srep35842

Lewin, A, Hamilton, S, Witkover, A, Langford, P, Nicholas, R, Chataway, J and Bangham, CR (2016). Raw data for RBC, Hb and haematocrit from article: Free serum haemoglobin is associated with brain atrophy in secondary progressive multiple sclerosis. [Data Collection]. Zenodo. http://doi.org/10.5281/zenodo.161532

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Dhalla, K, Cousens, S, Bowman, R, Wood, M and Murdoch, I (2016). Is Beta Radiation Better than 5 Flurouracil as an Adjunct for Trabeculectomy Surgery When Combined with Cataract Surgery? A Randomised Controlled Trial. [Data Collection]. PLOS One. https://journals.plos.org/plosone/10.1371/journal.pone.0161674.s001

Butcher, RMR, Sokana, O, Jack, K, Macleod, CK, Marks, ME, Kalae, E, Sui, L, Russell, C, Tutill, HJ, Williams, RJ, Breuer, J, Willis, R, Le Mesurier, RT, Mabey, DCW, Solomon, AW and Roberts, Ch (2016). Low Prevalence of Conjunctival Infection with Chlamydia trachomatis in a Treatment-Naïve Trachoma-Endemic Region of the Solomon Islands. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pntd.0004863

Thiha, N, Chinnakali, P, Harries, AD, Shwe, M, Balathandan, TP, Thein Than Tun, S, Das, M, Tin, HH, Yi, Y, Babin, FX, Lwin, TT and Clevenbergh, PA (2016). S1 Data for: "Is There a Need for Viral Load Testing to Assess Treatment Failure in HIV-Infected Patients Who Are about to Change to Tenofovir-Based First-Line Antiretroviral Therapy? Programmatic Findings from Myanmar". [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0160616.s001

Warhurst, DC, Craig, JC and Raheem, KS (2016). Influence of LAR and VAR on Para-Aminopyridine Antimalarials Targetting Haematin in Chloroquine-Resistance. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0160091.

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Li, M, Taylor, EG, Atkins, KE, Chapman, GB and Galvani, AP (2016). Stimulating Influenza Vaccination via Prosocial Motives. [Data Collection]. PLoS One. https://doi.org/10.1371/journal.pone.0159780

McLachlan, S, Giambartolomei, C, White, J, Charoen, P, Wong, A, Finan, C, Engmann, J, Shah, T, Hersch, M, Podmore, C, Cavadino, A, Jefferis, BJ, Dale, CE, Hypponen, E, Morris, RW, Casas, JP, Kumari, M, Ben-Shlomo, Y, Gaunt, TR, Drenos, F, Langenberg, C, Kuh, D, Kivimaki, M, Rueedi, R, Waeber, G, Hingorani, AD, Price, JF and Walker, AP (2016). Replication and Characterization of Association between ABO SNPs and Red Blood Cell Traits by Meta-Analysis in Europeans. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0156914.s012

Ochola-Oyier, LI, Okombo, J, Wagatua, N, Ochieng, J, Tetteh, KK, Fegan, G, Bejon, P and Marsh, K (2016). Comparison of allele frequencies of Plasmodium falciparum merozoite antigens in malaria infections sampled in different years in a Kenyan population. [Data Collection]. Malaria Journal. https://doi.org/10.1186/s12936-016-1304-8.

Mansour, NR, Paveley, R, Gardner, JMF, Bell, AS, Parkinson, T and Bickle, Q (2016). High Throughput Screening Identifies Novel Lead Compounds with Activity against Larval, Juvenile and Adult Schistosoma mansoni. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pntd.0004659.

Carpenter, DO, Svefors, P, Rahman, A, Ekström, E, Khan, AI, Lindström, E, Persson, LA and Ekholm Selling, K (2016). MINIMat data. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0149700.s004

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Wang, X, Zheng, D, Arima, H, Sato, S, Gasparrini, A, Heeley, E, Delcourt, C, Lo, S, Huang, Y, Wang, J, Stapf, C, Robinson, T, Lavados, P, Chalmers, J and Anderson, CS (2016). Low Ambient Temperature and Intracerebral Hemorrhage: The INTERACT2 Study. S1 Table. [Data Collection]. PLoS One. https://doi.org/10.1371/journal.pone.0149040.s004

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Phelan, JE, Coll, F, Bergval, I, Anthony, RM, Warren, R, Sampson, SL, Gey van Pittius, NC, Glynn, JR, Crampin, AC, Alves, A, Bessa, TB, Campino, S, Dheda, K, Grandjean, L, Hasan, R, Hasan, Z, Miranda, A, Moore, D, Panaiotov, S, Perdigao, J, Portugal, I, Sheen, P, de Oliveira Sousa, E, Streicher, EM, van Helden, PD, Viveiros, M, Hibberd, ML, Pain, A, Mcnerney, R and Clark, TG (2016). Data for: "Recombination in pe/ppe genes contributes to genetic variation in Mycobacterium tuberculosis lineages". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

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Nambron, R, Silajdžić, E, Kalliolia, E, Ottolenghi, C, Hindmarsh, P, Hill, NR, Costelloe, SJ, Martin, NG, Positano, V, Watt, HC, Frost, C, Björkqvist, M and Warner, TT (2016). A Metabolic Study of Huntington’s Disease. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0146480

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Pakpoor, J, Disanto, G, Altmann, D, Pavitt, S, Turner, BP, Marta, M, Juliusson, G, Baker, D, Chataway, J and Schmierer, K (2015). No evidence for higher risk of cancer in patients with multiple sclerosis taking cladribine: Data supplement. [Data Collection]. Neurology: Neuroimmunology & Neuroinflammation. https://doi.org/10.1212/NXI.0000000000000158

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Ugarte-Ruiz, M, Stabler, R, Domínguez, L, Domínguez, L, Wren, B, Dorrell, N and Gundogdu, O (2015). Prevalence of Type VI Secretion System in Spanish Campylobacter jejuni Isolates. [Data Collection]. National Center for Biotechnology Information. http://trace.ncbi.nlm.nih.gov/Traces/sra/?study=ERP012241

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Cliff, J, Cho, J, Lee, J, Ronacher, K, King, E, van Helden, P, Walzl, G and Dockrell, H (2015). Excessive Cytolytic Responses Predict Tuberculosis Relapse After Apparently Successful Treatment. [Data Collection]. ArrayExpress. http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-67589/

Seward, N, Prost, A, Copas, A, Corbin, M, Li, L, Colbourn, T, Osrin, D, Neuman, M, Azad, K, Kuddus, A, Nair, N, Tripathy, P, Manandhar, D, Costello, A and Cortina-Borja, M (2015). Using Observational Data to Estimate the Effect of Hand Washing and Clean Delivery Kit Use by Birth Attendants on Maternal Deaths after Home Deliveries in Rural Bangladesh, India and Nepal. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0136152

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Silver, M, Corbin, KD, Hellenthal, G, da Costa, K, Dominguez-salas, P, Moore, S, Owen, J, Prentice, A, Hennig, B and Zeisel, SH (2015). Evidence for negative selection of gene variants that increase dependence on dietary choline in a Gambian cohort: Supplemental Data. [Data Collection]. The FASEB Journal. https://doi.org/10.1096/fj.15-271056.

Lazzarino, A, Hamer, M, Carvalho, L, Gaze, D, Collinson, P and Steptoe, A (2015). The mediation of coronary calcification in the association between risk scores and cardiac troponin T elevation in healthy adults: Is atherosclerosis a good prognostic precursor of coronary disease? [Data Collection]. Preventive Medicine. https://doi.org/10.1016/j.ypmed.2015.05.025.

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Chidambaram, JD, Bauer, J, Holland, M, Burton, M, Prajna, NV, Srikanthi, P, Lalitha, P, Elakkiya, S and Lanjewar, S (2014). Transcriptome data for bacterial and fungal keratitis compared to cadaver cornea. [Data Collection]. ArrayExpress. http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-58291/

Chidambaram, JD, Bauer, J, Holland, M, Burton, M, Prajna, NV, Srikanthi, P, Lalitha, P, Elakkiya, S and Lanjewar, S (2014). Transcriptome data for bacterial and fungal keratitis compared to cadaver cornea. [Data Collection]. ArrayExpress, London, United Kingdom. http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-58291/

Fletcher, HA, Filali-Mouhim, A, Nemes, E, Hawkridge, A, Keyser, A, Njikan, S, Hatherill, M, Scriba, TJ, Abel, B, Kagina, BM, Veldsman, A, Agudelo, NM, Kaplan, G, Hussey, GD, Sekaly, R and Hanekom, WA (2014). PBMC expression profiles of BCG vaccine protected infants and of BCG vaccinated infants who develop tuberculosis disease. [Data Collection]. NCBI Gene Expression Omnibus. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE20716

Giraud, E, Rogers, M, Bates, P and Dillon, R (2014). Transcript abundance comparison between BALB/c ears inoculated with Leishmania mexicana and Leishmania mexicana plus promastigote secretory gel (PSG). [Data Collection]. ArrayExpress. http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-52101/

Joshua, G (2014). Transcription profiling by array of Caenorhabditis elegans with biofilm compared to without biofilm. [Data Collection]. ArrayExpress. http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-2981/

Pumirat, P, Cuccui, J, Stabler, R, Stevens, JM, Muangsombut, V, Singsuksawat, E, Stevens, MP, Wren, B and Korbsrisate, S (2014). Transcription profiling of Burkholderia pseudomallei under salt stress and the effect on a type III secretion system. [Data Collection]. ArrayExpress. http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-2302/

Zelmer, A, Martin, M, Gundogdu, O, Birchenough, G, Lever, R, Wren, B, Luzio, JP and Taylor, PW (2014). Transcription profiling of brain, liver and spleen from rats infected with Escherichia coli K1 and treated with capsule-selective endosialidase E. [Data Collection]. ArrayExpress. http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-2406/

Forbes, H, Bhaskaran, K, Thomas, SL, Smeeth, L, Clayton, T and Langan, S (2014). Therapy code list - Other immunosuppressive therapies codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.150.

Jombart, T, Cori, A, Didelot, X, Cauchemez, S, Fraser, C and Ferguson, N (2014). Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data. [Data Collection]. PLOS Computational Biology. https://doi.org/10.1371/journal.pcbi.1003457

Coll, F, Mcnerney, R, Guerra-Assunção, JA, Glynn, JR, Perdigão, J, Viveiros, M, Portugal, I, Pain, A, Martin, N and Clark, TG (2014). Data for: "A robust SNP barcode for typing Mycobacterium tuberculosis complex strains". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000414.

Geary, TG, Ingram-Sieber, K, Cowan, N, Panic, G, Vargas, M, Mansour, N, Bickle, Q, Wells, TNC, Spangenberg, T and Keiser, J (2014). Orally Active Antischistosomal Early Leads Identified from the Open Access Malaria Box. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0002610.

Bronowski, C, Fookes, MC, Gilderthorp, R, Ashelford, KE, Harris, SR, Phiri, A, Hall, N, Gordon, MA, Wain, J, Hart, CA, Wigley, P, Thomson, NR and Winstanley, C (2013). Genomic Characterisation of Invasive Non-Typhoidal Salmonella enterica Subspecies enterica Serovar Bovismorbificans Isolates from Malawi. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0002557

Anderson, ST, Coin, LJ, Crampin, AC, Dockrell, HM, Eley, B, French, N, Heyderman, RS, Hibberd, ML, Kaforou, M, Kern, F, Langford, PR, Levin, M, Ling, L, Wilkinson, RJ and Wright, VJ (2013). Genome-wide transcriptional profiling of HIV positive and negative adults with active tuberculosis, latent TB infection and other diseases. [Data Collection]. NCBI Gene Expression Omnibus. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE37250

Fong Ooi, W, Ong, C, Nandi, T, Kreisberg, JF, Hoon Chua, H, Sun, G, Chen, Y, Mueller, C, Conejero, L, Eshaghi, M, Moh Lik Ang, R, Liu, J, Sobral, BW, Korbsrisate, S, Hwen Gan, Y, Titball, RW, Bancroft, G, Valade, E and Tan, P (2013). The Condition-Dependent Transcriptional Landscape of Burkholderia pseudomallei. [Data Collection]. PLOS Genetics. https://doi.org/10.1371/journal.pgen.1003795

Derrick, T, Roberts, Ch, Rajasekhar, M, Burr, SE, Joof, H, Makalo, P, Bailey, RL, Mabey, DCW, Burton, MJ and Holland, MJ (2013). Conjunctival miRNA expression data in scarring and inflammatory trachoma. [Data Collection]. NCBI Gene Expression Omnibus. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE37717

Athrey, G, Hodges, TK, Reddy, MR, Overgaard, H, Matias, A, Ridl, FC, Kleinschmidt, I, Caccone, A and Slotman, MA (2013). Data from: Effective population size of malaria mosquitoes: large impact of vector control. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.1rf75

Cliff, J, Lee, J, Constantinou, N, Cho, J, Clark, TG, Ronacher, K, King, EC, Lukey, PT, Duncan, K, Van Helden, PD, Walzl, G and Dockrell, HM (2012). Tuberculosis Patients Blood Gene Expression Through Treatment. [Data Collection]. ArrayExpress. http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-31348/

Cliff, J, Lee, J, Constantinou, N, Cho, J, Clark, TG, Ronacher, K, King, EC, Lukey, PT, Duncan, K, Van Helden, PD, Walzl, G and Dockrell, HM (2012). Tuberculosis Patients Blood Gene Expression Through Treatment (cured and end-of-treatment patients). [Data Collection]. ArrayExpress. http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-36238/

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Arnvig, KB, Comas, I, Thomson, NR, Houghton, J, Boshoff, HI, Croucher, NJ, Rose, G, Perkins, TT, Parkhill, J, Dougan, G and Young, DB (2011). Sequence-Based Analysis Uncovers an Abundance of Non-Coding RNA in the Total Transcriptome of Mycobacterium tuberculosis. [Data Collection]. Figshare. https://doi.org/10.1371/journal.ppat.1002342

Burton, MJ, Hu, V, Bauer, J, Mabey, D, Holland, MJ and Bailey, RL (2011). The conjunctival transcriptome in scarring trachoma for Tanzanians. [Data Collection]. NCBI Gene Expression Omnibus. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE24383

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Holland, MJ, Natividad, A, Mabey, D, Jeffries, D, Burton, MJ and Bailey, RL (2011). Expression data from Gambian children with and without the clinical signs of active trachoma: HG-focus array. [Data Collection]. ArrayExpress. http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-20430/

Holland, MJ, Natividad, A, Mabey, DC, Jeffries, D, Burton, MJ, Bailey, RL and Freeman, TC (2011). Expression data from Gambian children with and without the clinical signs of active trachoma: U133 Plus2.0 array. [Data Collection]. ArrayExpress. http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-20436/

Bowyer, P, Simon, GM, Cravatt, BF and Bogyo, M (2010). Global Profiling of Proteolysis during Rupture of Plasmodium falciparum from the Host Erythrocyte. [Data Collection]. Molecular & Cellular Proteomics. https://doi.org/10.1074/mcp.M110.001636

Natividad, A, Freeman, TC, Jeffries, D, Burton, MJ, Mabey, DCW, Bailey, RL and Holland, MJ (2010). Expression data from Gambian children with and without the clinical signs of active trachoma: U133 Plus2.0 array. [Data Collection]. NCBI Gene Expression Omnibus. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE20436

London School of Hygiene & Tropical Medicine (2010). Proteromonas lacertae. [Data Collection]. NCBI BioProject. https://www.ncbi.nlm.nih.gov/bioproject/50831

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Holt, KE, Parkhill, J, Mazzoni, CJ, Roumagnac, P, Weill, F, Goodhead, I, Rance, R, Baker, S, Maskell, DJ, Wain, J, Dolecek, C, Achtman, M and Dougan, G (2008). High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi. [Data Collection]. Nature Genetics. https://doi.org/10.1038/ng.195.

Vernikos, GS, Thomson, NR and Parkhill, J (2007). Genetic flux over time in the Salmonella lineage. [Data Collection]. Genome Biology. https://doi.org/10.1186/gb-2007-8-6-r100