A

ACTWatch Group, ., Tougher, S, Hanson, K and Goodman, C (2017). ACTwatch Outlet Survey Files: Tanzania 2011 files. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.5016245

Abolins, S, King, E, Lazarou, L, Weldon, L, Hughes, L, Drescher, P, Raynes, J, Hafalla, J, Viney, ME and Riley, E (2017). Supplementary Data for: "The comparative immunology of wild and laboratory mice, Mus musculus domesticus". [Data Collection]. Nature Communications. https://www.nature.com/articles/ncomms14811#supplementary-information

Andreu, N, Phelan, J, de Sessions, PF, Cliff, JM, Clark, T and Hibberd, M (2017). Primary macrophages and J774 cells respond differently to infection with Mycobacterium tuberculosis. [Data Collection]. Gene Expression Omnibus. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE88801

Armstrong, BG, Gasparrini, A and Tobias, A (2017). R and STATA code for: "Conditional Poisson models: a flexible alternative to conditional logistic case cross-over analysis". [Data Collection]. Github. https://github.com/gasparrini/2014_armstrong_BMCmrm_Codedata

B

Bartlett, J and Keogh, R (2017). smcfcs: Multiple Imputation of Covariates by Substantive Model Compatible Fully Conditional Specification. [Data Collection]. The Comprehensive R Archive Network. https://cran.r-project.org/package=smcfcs

Bastawrous, A (2017). Peek: a retinal imaging smartphone app. [Data Collection]. Peek Vision Ltd. https://www.peekvision.org/

Bhaskaran, K, Gasparrini, A, Hajat, S, Smeeth, L and Armstrong, B (2017). R code, Stata code and data for: "Time series regression studies in environmental epidemiology". [Data Collection]. Github. https://github.com/gasparrini/2013_bhaskaran_IJE_Codedata

Blencowe, H (2017). Global and regional prevalence of neural tube defects estimates in 2015: Data sources, methods and results. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.264.

Boone, P, Eble, A, Elbourne, D, Frost, C, Jayanty, C, Lakshminarayana, R, Mann, V, Mukherjee, R, Piaggio, G and Reddy, P (2017). Community health promotion and medical provision for neonatal health—CHAMPION cluster randomised trial in Nagarkurnool district, Telangana (formerly Andhra Pradesh), India. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pmed.1002324

Bower, H and Glynn, J (2017). Data from: A systematic review and meta-analysis of seroprevalence surveys of ebolavirus infection. [Data Collection]. Dryad Digital Repository. https://doi.org/10.5061/dryad.gn95r.2.

Bright, T, Mulwafu, W, Thindwa, R, Zuurmond, M and Polack, S (2017). Data from: Reasons for low uptake of referrals to ear and hearing services for children in Malawi. [Data Collection]. Dryad Digital Repository. https://doi.org/10.5061/dryad.hc8k0

Burr, SE, Camara, B, Oluwalana, C, Bojang, E, Bottomley, C, Bojang, A, Bailey, RL, D’alessandro, U and Roca, A (2017). Data for: "Does azithromycin given to women in labour decrease ocular bacterial infection in neonates? A double-blind, randomized trial". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

C

Castro Lopes, S, Guerra-Arias, M, Buchan, J, Pozo-Martin, F and Nove, A (2017). A rapid review of the rate of attrition from the health workforce. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.3706795

Chandler, C, Webb, EL, Maiteki-Sebuguzi, C, Nayiga, S, Nabirye, C, Diliberto, D, Ssemmondo, E, Dorsey, G, Kamya, MR and Staedke, SG (2017). The impact of an intervention to introduce malaria rapid diagnostic tests on fever case management in a high transmission setting in Uganda: A mixed-methods cluster-randomized trial (PRIME). [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0170998.

Chidambaram, JD, Kannambath, S, Srikanthi, P, Shah, M, Lalitha, P, Elakkiya, S, Bauer, J, Prajna, NV, Holland, MJ and Burton, MJ (2017). Persistence of Innate Immune Pathways in Late Stage Human Bacterial and Fungal Keratitis: Results from a Comparative Transcriptome Analysis. [Data Collection]. Frontiers in Cellular and Infection Microbiology. http://journal.frontiersin.org/article/10.3389/fcimb.2017.00193/full#supplementary-material

Cortes, T, Schubert, OT, Banaei-Esfahani, A, Collins, BC, Aebersold, R and Young, DB (2017). Time course RNA-seq of Mycobacterium tuberculosis exposed to nitric oxide. [Data Collection]. ArrayExpress. http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-5557/

Crellin, E, Mansfield, KE, Leyrat, C, Nitsch, D, Douglas, IJ, Root, A and Williamson, E (2017). Clinical Code List - Read Codes - Hypertension. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.254.

Crellin, E, Mansfield, KE, Leyrat, C, Nitsch, D, Douglas, IJ, Root, A, Williamson, E and Smeeth, L (2017). Clinical Code List - Read Codes - Hyperkalaemia. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.249.

Crellin, E, Mansfield, KE, Leyrat, C, Nitsch, D, Douglas, IJ, Root, A, Williamson, E, Smeeth, L and Tomlinson, L (2017). Clinical Code List - ICD-10 - Hyperkalaemia. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.236.

Crellin, E, Mansfield, KE, Leyrat, C, Nitsch, D, Douglas, IJ, Root, A, Williamson, E, Smeeth, L and Tomlinson, LA (2017). Clinical Code List - ICD-10 - Acute Kidney Injury. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.251.

Crellin, E, Mansfield, KE, Leyrat, C, Nitsch, D, Douglas, IJ, Root, A, Williamson, E, Smeeth, L and Tomlinson, LA (2017). Clinical Code List - ICD-10 - Arrhythmia. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.259.

Crellin, E, Mansfield, KE, Leyrat, C, Nitsch, D, Douglas, IJ, Root, A, Williamson, E, Smeeth, L and Tomlinson, LA (2017). Clinical Code List - ICD-10 - Cardiac Failure. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.256.

Crellin, E, Mansfield, KE, Leyrat, C, Nitsch, D, Douglas, IJ, Root, A, Williamson, E, Smeeth, L and Tomlinson, LA (2017). Clinical Code List - ICD-10 - Death. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.246.

Crellin, E, Mansfield, KE, Leyrat, C, Nitsch, D, Douglas, IJ, Root, A, Williamson, E, Smeeth, L and Tomlinson, LA (2017). Clinical Code List - ICD-10 - Diabetes Mellitus. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.239.

Crellin, E, Mansfield, KE, Leyrat, C, Nitsch, D, Douglas, IJ, Root, A, Williamson, E, Smeeth, L and Tomlinson, LA (2017). Clinical Code List - ICD-10 - End-Stage Renal Disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.241.

Crellin, E, Mansfield, KE, Leyrat, C, Nitsch, D, Douglas, IJ, Root, A, Williamson, E, Smeeth, L and Tomlinson, LA (2017). Clinical Code List - ICD-10 - Hypertension. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.233.

Crellin, E, Mansfield, KE, Leyrat, C, Nitsch, D, Douglas, IJ, Root, A, Williamson, E, Smeeth, L and Tomlinson, LA (2017). Clinical Code List - ICD-10 - Ischaemic Heart Disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.235.

Crellin, E, Mansfield, KE, Leyrat, C, Nitsch, D, Douglas, IJ, Root, A, Williamson, E, Smeeth, L and Tomlinson, LA (2017). Clinical Code List - OPCS - End stage renal disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.253.

Crellin, E, Mansfield, KE, Leyrat, C, Nitsch, D, Douglas, IJ, Root, A, Williamson, E, Smeeth, L and Tomlinson, LA (2017). Clinical Code List - Read Codes - Arrhythmia. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.245.

Crellin, E, Mansfield, KE, Leyrat, C, Nitsch, D, Douglas, IJ, Root, A, Williamson, E, Smeeth, L and Tomlinson, LA (2017). Clinical Code List - Read Codes - Cardiac Failure. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.237.

Crellin, E, Mansfield, KE, Leyrat, C, Nitsch, D, Douglas, IJ, Root, A, Williamson, E, Smeeth, L and Tomlinson, LA (2017). Clinical Code List - Read Codes - Death. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.258.

Crellin, E, Mansfield, KE, Leyrat, C, Nitsch, D, Douglas, IJ, Root, A, Williamson, E, Smeeth, L and Tomlinson, LA (2017). Clinical Code List - Read Codes - Diabetes Mellitus. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.243.

Crellin, E, Mansfield, KE, Leyrat, C, Nitsch, D, Douglas, IJ, Root, A, Williamson, E, Smeeth, L and Tomlinson, LA (2017). Clinical Code List - Read Codes - End-Stage Renal Disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.232.

Crellin, E, Mansfield, KE, Leyrat, C, Nitsch, D, Douglas, IJ, Root, A, Williamson, E, Smeeth, L and Tomlinson, LA (2017). Clinical Code List - Read Codes - Ischaemic heart disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.248.

Crellin, E, Mansfield, KE, Leyrat, C, Nitsch, D, Douglas, IJ, Root, A, Williamson, E, Smeeth, L and Tomlinson, LA (2017). Clinical Code List - Read Codes - Renal Structural Anomalies. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.238.

Crellin, E, Mansfield, KE, Leyrat, C, Nitsch, D, Douglas, IJ, Root, A, Williamson, E, Smeeth, L and Tomlinson, LA (2017). Clinical Code List - Read Codes - Urinary Tract Infection. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.252.

Crellin, E, Mansfield, KE, Leyrat, C, Nitsch, D, Douglas, IJ, Root, A, Williamson, E, Smeeth, L and Tomlinson, LA (2017). Clinical Code List - Read Codes - Urological Malignancies. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.257.

Crellin, E, Mansfield, KE, Leyrat, C, Nitsch, D, Douglas, IJ, Root, A, Williamson, E, Smeeth, L and Tomlinson, LA (2017). Clinical code List - Read Codes - Prostatic Hypertrophy. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.250.

Crellin, E, Mansfield, KE, Leyrat, C, Nitsch, D, Douglas, IJ, Root, A, Williamson, E, Smeeth, L and Tomlinson, LA (2017). Therapy Code List - Amoxicillin. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.255.

Crellin, E, Mansfield, KE, Leyrat, C, Nitsch, D, Douglas, IJ, Root, A, Williamson, E, Smeeth, L and Tomlinson, LA (2017). Therapy Code List - Angiotensin converting enzyme inhibitors/angiotensin receptor blockers. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.234.

Crellin, E, Mansfield, KE, Leyrat, C, Nitsch, D, Douglas, IJ, Root, A, Williamson, E, Smeeth, L and Tomlinson, LA (2017). Therapy Code List - Cefalexin. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.242.

Crellin, E, Mansfield, KE, Leyrat, C, Nitsch, D, Douglas, IJ, Root, A, Williamson, E, Smeeth, L and Tomlinson, LA (2017). Therapy Code List - Ciprofloxacin. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.247.

Crellin, E, Mansfield, KE, Leyrat, C, Nitsch, D, Douglas, IJ, Root, A, Williamson, E, Smeeth, L and Tomlinson, LA (2017). Therapy Code List - Nitrofurantoin. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.230.

Crellin, E, Mansfield, KE, Leyrat, C, Nitsch, D, Douglas, IJ, Root, A, Williamson, E, Smeeth, L and Tomlinson, LA (2017). Therapy Code List - Potassium-sparing Diuretics. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.231.

Crellin, E, Mansfield, KE, Leyrat, C, Nitsch, D, Douglas, IJ, Root, A, Williamson, E, Smeeth, L and Tomlinson, LA (2017). Therapy Code List - Trimethoprim. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.240.

Crellin, E, Mansfield, KE, Nitsch, D, Douglas, IJ, Root, A, Williamson, E, Smeeth, L and Tomlinson, LA (2017). Clinical Code List - Read Codes - Urinary Calculi. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.244.

Cresswell, J, Ganaba, R, Sarrassat, S, Cousens, S, Somé, H, Diallo, AH and Filippi, V (2017). Alive & Thrive Evaluation in Burkina Faso: baseline data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.173.

D

Dennis, M, Chelwa, N, Owolabi, O, Cresswell, J, Filippi, V and Campbell, O (2017). Zambia Signal Functions study 2016 dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.276.

Dennis, M, Radovich, E, Wong, K, Owolabi, O, Cavallaro, F, Mbizvo, MT, Binagwaho, A, Waiswa, P, Lynch, C and Benova, L (2017). Pathways to increased coverage: an analysis of time trends in contraceptive need and use among adolescents and young women in Kenya, Rwanda, Tanzania, and Uganda. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.3907207

Diallo, K, Gamougam, K, Daugla, DM, Harrison, OB, Bray, JE, Caugant, DA, Lucidarme, J, Trotter, CL, Hassan-King, M, Stuart, JM, Manigart, O, Greenwood, BM and Maiden, MCJ (2017). Hierarchical genomic analysis of carried and invasive serogroup A Neisseria meningitidis during the 2011 epidemic in Chad. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.3785438

Diez Benavente, E, Florez de Sessions, P, Moon, RW, Holder, AA, Blackman, MJ, Roper, C, Drakeley, CJ, Pain, A, Sutherland, CJ, Hibberd, ML, Campino, S and Clark, TG (2017). Analysis of nuclear and organellar genomes of Plasmodium knowlesi in humans reveals ancient population structure and recent recombination among host-specific subpopulations. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pgen.1007008

Dodds, C, Keogh, P and Weatherburn, P (2017). Accessing HIV post-exposure prophylaxis: gay and bisexual men in the UK describe their experiences. [Data Collection]. UK Data Service, Colchester, Essex, United Kingdom. http://doi.org/10.5255/UKDA-SN-852745

Domman, D, Quilici, M, Dorman, MJ, Njamkepo, E, Mutreja, A, Mather, AE, Delgado, G, Morales-Espinosa, R, Grimont, PAD, Lizárraga-Partida, ML, Bouchier, C, Aanensen, DM, Kuri-Morales, P, Tarr, CL, Dougan, G, Parkhill, J, Campos, J, Cravioto, A, Weill, F and Thomson, NR (2017). Integrated view of Vibrio cholerae in the Americas. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.5427253.v1

Dube, A and Crampin, AC (2017). Malawi - Karonga HDSS INDEPTH Core Dataset 2003-2015 (Release 2017). [Data Collection]. INDEPTH Data Repository. http://indepth-ishare.org/index.php/catalog/128

E

Elmes, J, Skovdal, M, Nhongo, K, Ward, H, Campbell, C, Hallett, TB, Nyamukapa, C, White, PJ and Gregson, S (2017). Selected interview transcript quotes from: "A reconfiguration of the sex trade: How social and structural changes in eastern Zimbabwe left women involved in sex work and transactional sex more vulnerable". [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0171916.s001

F

Falconer, J (2017). Search strategies for "Evidence for the use of administrative controls to reduce the transmission of Mycobacterium tuberculosis in healthcare settings: a systematic review". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001020.

Fernandez, MAL (2017). CMATCH: Stata module to tabulate matched pairs in 1:1 case control study by exposure status. [Data Collection]. EconPapers. https://econpapers.repec.org/RePEc:boc:bocode:s458408

Ferrand, R, Weiss, H, Simms, V, Dauya, E, Bandason, T, McHugh, G and Dakshina, S (2017). ZENITH Adolescent HIV prevalence survey dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.174.

Francis, SC (2017). iGugu Main Study Data PLOS Medicine. [Data Collection]. INDEPTH Data Repository. https://doi.org/10.7796/iGUGU.MAIN.STUDY.DATA.PLOS.MEDICINE.v1

G

Gasparrini, A (2017). R Code for: "Modelling lagged associations in environmental time series data: a simulation study". [Data Collection]. Github. https://github.com/gasparrini/2016_gasparrini_Epidem_Rcode

Gasparrini, A (2017). R code for: "Modeling exposure–lag–response associations with distributed lag non-linear models". [Data Collection]. Github. https://github.com/gasparrini/2014_gasparrini_StatMed_Rcodedata

Gasparrini, A (2017). Tutorial code for "Distributed Lag Linear and Non-Linear Models in R: The Package dlnm". [Data Collection]. Github. https://github.com/gasparrini/2011_gasparrini_JSS_Rcode

Gasparrini, A and Armstrong, B (2017). R code and data for: "Reducing and meta-analysing estimates from distributed lag non-linear models". [Data Collection]. Github. https://github.com/gasparrini/2013_gasparrini_BMCmrm_Rcodedata

Gasparrini, A and Armstrong, B (2017). R code for: "The impact of heat waves on mortality". [Data Collection]. Github. https://github.com/gasparrini/2011_gasparrini_Epidem_Rcode

Gasparrini, A, Armstrong, B and Kenward, MG (2017). R code and data for: "Multivariate meta-analysis for non-linear and other multi-parameter associations". [Data Collection]. Github. https://github.com/gasparrini/2012_gasparrini_StatMed_Rcodedata

Gasparrini, A, Armstrong, B and Kenward, MG (2017). R code for: "Distributed lag non-linear models". [Data Collection]. Github. https://github.com/gasparrini/2010_gasparrini_StatMed_Rcode

Gasparrini, A, Armstrong, B and Scheipl, F (2017). dlnm: Distributed Lag Non-Linear Models. [Data Collection]. The Comprehensive R Archive Network. https://CRAN.R-project.org/package=dlnm

Gasparrini, A, Guo, Y, Hashizume, M, Kinney, PL, Petkova, EP, Lavigne, E, Zanobetti, A, Schwartz, JD, Tobias, A, Leone, M, Tong, S, Honda, Y, Kim, H and Armstrong, BG (2017). R code and data for: "Temporal Variation in Heat–Mortality Associations: A Multicountry Study". [Data Collection]. Github. https://github.com/gasparrini/2015_gasparrini_EHP_Rcodedata

Gasparrini, A and Leone, M (2017). attrdl.Rd: Attributable Risk from a DLNM. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://github.com/gasparrini/2014_gasparrini_BMCmrm_Rcodedata

Gasparrini, A, Scheipl, F, Armstrong, B and Kenward, M (2017). R code and data for: "A penalized framework for distributed lag non-linear models". [Data Collection]. Github. https://github.com/gasparrini/2017_gasparrini_Biomet_Rcodedata

Gibson, A (2017). LSHTM - RCUK Article Processing Charge (APC) compliance and financial report 2016-17. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.5035934.v3.

Glynn, JR, Bower, H, Houlihan, C, Oza, S, Checchi, F, Johnson, S, Turay, C, Sesay, D, Mansaray, SH, Kamara, O, Kamara, JA, Bangura, MS, Montesano, C, Dicks, S, Samuel, D, Tedder, R and Sebba, C (2017). Asymptomatic infection and family contact patterns in households of Ebola Virus Disease survivors, Sierra Leone 2015. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.41.

Goodman, C, Bruxvoort, K and Challenger, E (2017). IMPACT2 patient adherence to Artemether-Lumefantrine: Smart blister pack time stamp data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.261.

Greenwood, B, Greenwood, A and Bradley, A (2017). Data from a study of Guinea worm infection in northern Nigeria, 1971-1974. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.134.

Grollman, C, Arregoces, L, Pitt, C, Borghi, J, Martinez-Alvarez, M, Powell-Jackson, T, Hsu, J and Greco, G (2017). Countdown ODA+ Dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.127.

H

Halliday, K, Witek-mcmanus, S, Opondo, C, Mtali, A, Allen, E, Bauleni, A, Ndau, S, Phondiwa, E, Ali, D, Kachigunda, V, Sande, J, Verney, A, Chimuna, T, Melody, D, Moestue, H, Roschnik, N, Brooker, S and Mathanga, D (2017). Learner Treatment Kit (school-based malaria diagnosis and treatment in southern Malawi): Study data and support materials. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.203.

Hanron, AE, Billman, ZP, Seilie, AM, Olsen, TM, Fishbaugher, M, Chang, M, Rueckle, T, Andenmatten, N, Greenhouse, B, Arinaitwe, E, Rek, J, Das, S, Domingo, GJ, Shipman, K, Kappe, SH, Kublin, JG and Murphy, SC (2017). Multiplex, DNase-free one-step reverse transcription PCR for Plasmodium 18S rRNA and spliced gametocyte-specific mRNAs. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.3784184

Hayes, R, Floyd, S, Schaap, A, Shanaube, K, Bock, P, Sabapathy, K, Griffith, S, Donnell, D, Piwowar-Manning, E, El-Sadr, W, Beyers, N, Ayles, H and Fidler, S (2017). A universal testing and treatment intervention to improve HIV control: One-year results from intervention communities in Zambia in the HPTN 071 (PopART) cluster-randomised trial. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pmed.1002292.

Hendy, A, Sluydts, V, Tushar, T, De Witte, J, Odonga, P, Loum, D, Nyaraga, M, Lakwo, T, Dujardin, J, Post, R, Kalinga, A and Echodu, R (2017). Esperanza Window Traps for the collection of anthropophilic blackflies (Diptera: Simuliidae) in Uganda and Tanzania. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pntd.0005688.s003

Hensman Moss, DJ, Robertson, N, Farmer, R, Scahill, RI, Haider, S, Tessari, MA, Flynn, G, Fischer, DF, Wild, EJ, Macdonald, D and Tabrizi, SJ (2017). Quantification of huntingtin protein species in Huntington’s disease patient leukocytes using optimised electrochemiluminescence immunoassays. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0189891

Horton, KC, Dueger, EL, Kandeel, A, Abdallat, M, El-Kholy, A, Al-Awaidy, S, Kohlani, AH, Amer, H, El-Khal, AL, Said, M, House, B, Pimentel, G and Talaat, M (2017). S1 Dataset for "Viral etiology, seasonality and severity of hospitalized patients with severe acute respiratory infections in the Eastern Mediterranean Region, 2007–2014". [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0180954.s002

Howard, N, Guinness, L and Rowland, M (2017). Economic data for the Afghan refugee malaria control programme in Pakistan 1990-1995. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.260.

Hutchison, C, Khan, M, Yoong, J and Coker, R (2017). Financial barriers and coping strategies: a qualitative study of accessing multidrug-resistant tuberculosis and tuberculosis care in Yunnan, China. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.3699937.

J

Jacob, PE, Lee, A, Murray, L and Funk, S (2017). rbi: R Interface to LibBi. [Data Collection]. The Comprehensive R Archive Network. https://cran.r-project.org/package=rbi

Johnson, A and Mercer, C (2017). National Survey of Sexual Attitudes and Lifestyles, 2010-2012: Biological Data: Secure Access. [Data Collection]. UK Data Service, Colchester, Essex, United Kingdom. http://doi.org/10.5255/UKDA-SN-8179-1

Johnson, A and Mercer, C (2017). National Survey of Sexual Attitudes and Lifestyles, 2010-2012: Secure Access. [Data Collection]. UK Data Service, Colchester, Essex, United Kingdom. http://doi.org/10.5255/UKDA-SN-8178-1

Judah, G, de Witt Huberts, J, Drassal, A and Aunger, R (2017). The development and validation of a Real Time Location System to reliably monitor everyday activities in natural contexts. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0171610.

K

Kabudula, C and Rentsch, C (2017). Point-of-contact Interactive Record Linkage (PIRL). [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.998867

Kallonen, T, Brodrick, HJ, Harris, SR, Corander, J, Brown, NM, Martin, V, Peacock, SJ and Parkhill, J (2017). Systematic longitudinal survey of invasive Escherichia coli in England demonstrates a stable population structure only transiently disturbed by the emergence of ST131. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.1101/gr.216606.116

Kaup, S, Naseer, A, Shivalli, S and Arunach, C (2017). S1 Data Sheet for: "Occupational exposure to unburnt tobacco and potential risk of toxic optic neuropathy: A cross-sectional study among beedi rollers in selected rural areas of coastal Karnataka, India". [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0188378.s002

Kazungu, JS and Adetifa, I (2017). Replication Data for: Crude childhood vaccination coverage in West Africa: trends and predictors of completeness. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. http://dx.doi.org/10.7910/DVN/YQYES9

Kelly, H, Weiss, H, Benavente Moreno, Y, de Sanjose, S and Mayaud, P (2017). Antiretroviral therapy, high-risk human papillomavirus and cervical intraepithelial neoplasia: a systematic review and meta-analysis. [Data Collection]. Mendeley Data. http://dx.doi.org/10.17632/cg8k3d7rc8.1

Kessy, A, Lewin, A and Strimmer, K (2017). Optimal Whitening and Decorrelation. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.4568002.v1

Knight, G (2017). LSHTM Data Compass Statistics Report - 2016. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.132.

L

Lazzarino, AI and Mindell, JS (2017). Measuring high-sensitivity cardiac troponin T blood concentration in population surveys. [Data Collection]. Figshare. http://dx.doi.org/10.1371/journal.pone.0171242.s001

Le Rutte, EA, Chapman, LA, Coffeng, LE, Jervis, S, Hasker, EC, Dwivedi, S, Karthick, M, Das, A, Mahapatra, T, Chaudhuri, I, Boelaert, MC, Medley, GF, Srikantiah, S, Hollingsworth, TD and de Vlas, SJ (2017). Elimination of visceral leishmaniasis in the Indian subcontinent: a comparison of predictions from three transmission models. [Data Collection]. Epidemics. http://doi.org/10.1016/j.epidem.2017.01.002

Leurent, B, Gomes, M and Carpenter, J (2017). Missing data in trial-based cost-effectiveness analysis review dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.272.

Library & Archives Service, L (2017). Health funder requirements for data management and sharing. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.172.

Library & Archives Service, L (2017). LSHTM Research Data Management Summary Guides. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.50.

Lim, SH, Mburu, G, Bourne, A, Pang, J, Wickersham, JA, Wei, CKT, Yee, IA, Wang, B, Cassolato, M and Azwa, I (2017). Willingness to use PrEP Questionnaire. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0182838

Liverani, M (2017). Health data and information sharing across the borders in LMICs: views from stakeholders in Cambodia and Vietnam. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.270.

Liverani, M (2017). International health cooperation in the Greater Mekong Subregion. [Data Collection]. UK Data Archive, Colchester, Essex, United Kingdom. https://doi.org/10.5255/UKDA-SN-852820

Liverani, M, Charlwood, JD, Lawford, H and Yeung, S (2017). Field assessment of a novel spatial repellent for malaria control: a feasibility and acceptability study in Mondulkiri, Cambodia. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.3904558

Liverani, M, Nguon, C, Sok, R, Kim, D, Nou, P, Nguon, S and Yeung, S (2017). Improving access to health care amongst vulnerable populations: a qualitative study of village malaria workers in Kampot, Cambodia. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.3774209

Lopez Bernal, JA, Lu, CY, Gasparrini, A, Cummins, S, Wharham, JF and Soumerai, SB (2017). Association between the 2012 Health and Social Care Act and specialist visits and hospitalisations in England: A controlled interrupted time series analysis. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pmed.1002427

Lopez-Bernal, J, Cummins, S and Gasparrini, A (2017). R and STATA code for: "Interrupted time series regression for the evaluation of public health interventions: a tutorial". [Data Collection]. GitHub. http://www.ag-myresearch.com/2017_lopezbernal_ije.html

Luque, MA (2017). eltmle: Ensemble Learning Targeted Maximum Likelihood Estimation. [Data Collection]. GitHub. https://github.com/migariane/meltmle

Luque, MA, Maringe, C and Nelson, P (2017). CVAUROC: Stata module to compute Cross-validated Area Under the Curve for ROC Analysis after Predictive Modelling for Binary Outcomes. [Data Collection]. EconPapers. http://econpapers.repec.org/RePEc:boc:bocode:s458324

Luque-Fernandez, MA, Maringe, C and Nelson, P (2017). cvAUROC: Cross-validated Area Under the Curve (AUC). [Data Collection]. GitHub repository. https://github.com/migariane/cvAUROC

M

Makungu, C, Stephen, S, Kumburu, S, Govella, NJ, Dongus, S, Hildon, ZJ, Killeen, GF and Jones, C (2017). Informing new or improved vector control tools for reducing the malaria burden in Tanzania: a qualitative exploration of perceptions of mosquitoes and methods for their control among the residents of Dar es Salaam. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.3902581

Mansfield, KE, Douglas, IJ, Nitsch, D, Thomas, SL, Smeeth, L and Tomlinson, L (2017). Read Code List - Arrhythmia. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.216.

Mansfield, KE, Douglas, IJ, Nitsch, D, Thomas, SL, Smeeth, L and Tomlinson, LA (2017). ICD-10 Code List - Arrhythmia. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.221.

Mansfield, KE, Douglas, IJ, Nitsch, D, Thomas, SL, Smeeth, L and Tomlinson, LA (2017). ICD-10 Code List - Cardiac Failure. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.219.

Mansfield, KE, Douglas, IJ, Nitsch, D, Thomas, SL, Smeeth, L and Tomlinson, LA (2017). ICD-10 Code List - Diabetes Mellitus. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.226.

Mansfield, KE, Douglas, IJ, Nitsch, D, Thomas, SL, Smeeth, L and Tomlinson, LA (2017). ICD-10 Code List - ESRD. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.217.

Mansfield, KE, Douglas, IJ, Nitsch, D, Thomas, SL, Smeeth, L and Tomlinson, LA (2017). ICD-10 Code List - Hypertension. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.227.

Mansfield, KE, Douglas, IJ, Nitsch, D, Thomas, SL, Smeeth, L and Tomlinson, LA (2017). ICD-10 Code List - Ischaemic Heart Disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.213.

Mansfield, KE, Douglas, IJ, Nitsch, D, Thomas, SL, Smeeth, L and Tomlinson, LA (2017). OPCS Code List - ESRD. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.222.

Mansfield, KE, Douglas, IJ, Nitsch, D, Thomas, SL, Smeeth, L and Tomlinson, LA (2017). Read Code List - Cardiac Failure. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.214.

Mansfield, KE, Douglas, IJ, Nitsch, D, Thomas, SL, Smeeth, L and Tomlinson, LA (2017). Read Code List - ESRD. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.212.

Mansfield, KE, Douglas, IJ, Nitsch, D, Thomas, SL, Smeeth, L and Tomlinson, LA (2017). Read Code List - Gastroenteritis. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.218.

Mansfield, KE, Douglas, IJ, Nitsch, D, Thomas, SL, Smeeth, L and Tomlinson, LA (2017). Read Code List - Hypertension. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.228.

Mansfield, KE, Douglas, IJ, Nitsch, D, Thomas, SL, Smeeth, L and Tomlinson, LA (2017). Read Code List - Ischaemic Heart Disease. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.215.

Mansfield, KE, Douglas, IJ, Nitsch, D, Thomas, SL, Smeeth, L and Tomlinson, LA (2017). Read Code List - Lower Respiratory Tract Infection. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.220.

Mansfield, KE, Douglas, IJ, Nitsch, D, Thomas, SL, Smeeth, L and Tomlinson, LA (2017). Read Code List - Urinary Tract Infection. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.225.

Mansfield, KE, Douglas, IJ, Nitsch, D, Thomas, S, Smeeth, L and Tomlinson, LA (2017). ICD-10 Code List - Acute Kidney Injury. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.224.

Mansfield, KE, Douglas, IJ, Nitsch, D, Thomas, S, Smeeth, L and Tomlinson, LA (2017). Read Code List - Diabetes Mellitus. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.223.

Maringe, C, Fowler, H, Rachet, B and Fernandez, MAL (2017). Reproducibility, reliability and validity of population-based administrative health data for the assessment of cancer non-related comorbidities". [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0172814

Marks, M (2017). Data for: Incidental mosquitocidal effect of an ivermectin mass drug administration on Anopheles farauti conducted for scabies control in the Solomon Islands. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.267.

Marks, M (2017). Scabies Dataset for "Learning Clinical Epidemiology with R" tutorial. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Marks, M, Butcher, RMR, Roberts, C, Holland, M, Solomon, AW and Mabey, D (2017). Trachoma datasets for "Learning Clinical Epidemiology with R" tutorial. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Marks, M, Camacho, A, Kucharski, A, Funk, S, Edmunds, J and Piot, P (2017). Ebola Dataset for "Learning Clinical Epidemiology with R" tutorial. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Marks, M, Kwakye-Maclean, C, Doherty, R, Adwere, P, Aziz Abdulai, A, Duah, F, Ohene, S, Mitja, O, Oguti, B, Solomon, AW, Mabey, DCW, Adu-Sarkodie, Y, Asiedu, K and Ackumey, MM (2017). Knowledge, attitudes and practices towards yaws and yaws-like skin disease in Ghana. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pntd.0005820.

Marks, M, Mitja, O, Fitzpatrick, C, Asiedu, K, Solomon, AW, Mabey, D and Funk, S (2017). R files for: Mathematical Modeling of Programmatic Requirements for Yaws Eradication. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.266.

Marks, M and Roberts, C (2017). Poisson Regression Dataset for "Learning Clinical Epidemiology with R" tutorial. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Masala, G, Lipsitch, M, Bottomley, C and Flasche, S (2017). Supplementary material from "Exploring the role of competition induced by non-vaccine serotypes for herd protection following pneumococcal vaccination". [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.3911881.v1

Matthews, A and Bhaskaran, K (2017). Clinical code list - Alcohol codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.194.

Matthews, A and Bhaskaran, K (2017). Clinical code list - All Cancer types. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.176.

Matthews, A and Bhaskaran, K (2017). Clinical code list - Atrial Fibrillation. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.187.

Matthews, A and Bhaskaran, K (2017). Clinical code list - Blood pressure recording. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.197.

Matthews, A and Bhaskaran, K (2017). Clinical code list - Breast Cancer. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.198.

Matthews, A and Bhaskaran, K (2017). Clinical code list - Cardiomyopathy. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.195.

Matthews, A and Bhaskaran, K (2017). Clinical code list - Creatine. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.175.

Matthews, A and Bhaskaran, K (2017). Clinical code list - Diabetes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.181.

Matthews, A and Bhaskaran, K (2017). Clinical code list - Smoking. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.196.

Matthews, A and Bhaskaran, K (2017). Clinical code list - Statins. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.186.

Matthews, A and Bhaskaran, K (2017). Clinical code list - Tamoxifen. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.183.

Matthews, A and Bhaskaran, K (2017). Therapy code list - ACE inhibitors. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.193.

Matthews, A and Bhaskaran, K (2017). Therapy code list - Aromatase Inhibitors. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.188.

McTavish, JR, Kimber, M, Devries, K, Colombini, M, MacGregor, JCD, Wathen, CN, Agarwal, A and MacMillan, HL (2017). Data from: Mandated reporters’ experiences with reporting child maltreatment: a meta-synthesis of qualitative studies. [Data Collection]. Dryad Digital Repository. https://doi.org/10.5061/dryad.6d159

Mccarthy, O, Wazwaz, O, Jado, I, Leurent, B, Edwards, P, Adada, S, Stavridis, A and Free, C (2017). An intervention delivered by text message to increase the acceptability of effective contraception among young women in Palestine: study protocol for a randomised controlled trial. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.3895882

Mccarthy, O, Wazwaz, O, Jado, I, Leurent, B, Edwards, P, Adada, S, Stavridis, A and Free, C (2017). An intervention delivered by text message to increase the acceptability of effective contraception among young women in Palestine: study protocol for a randomised controlled trial. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.3895882

Mccreesh, N (2017). Model code for "An explanation for the low proportion of tuberculosis that results from transmission between household and known social contacts". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.283.

Mcquaid, CF, van den Bosch, F, Szyniszewska, A, Alicai, T, Pariyo, A, Chikoti, PC and Gilligan, CA (2017). Spatial dynamics and control of a crop pathogen with mixed-mode transmission. [Data Collection]. PLOS Computational Biology. https://doi.org/10.1371/journal.pcbi.1005654

Messenger, LA, Shililu, J, Irish, SR, Anshebo, GY, Tesfaye, AG, Ye-Ebiyo, Y, Chibsa, S, Dengela, D, Dissanayake, G, Kebede, E, Zemene, E, Asale, A, Yohannes, M, Taffese, HS, George, K, Fornadel, C, Seyoum, A, Wirtz, RA and Yewhalaw, D (2017). MOESM1 of Insecticide resistance in Anopheles arabiensis from Ethiopia (2012-2016): a nationwide study for insecticide resistance monitoring. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.3934171_D1

Migchelsen, S and Mabey, D (2017). Trachoma prevalence and age-specific prevalence of anti-Pgp3 antibodies from Lower River Region and Upper River Region, The Gambia. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.130.

Moradigaravand, D, Martin, V, Peacock, S and Parkhill, J (2017). Evolution and Epidemiology of Multidrug-Resistant Klebsiella pneumoniae in the United Kingdom and Ireland. [Data Collection]. mBio. https://doi.org/10.1128/mBio.01976-16

Murray, L (2017). Data for: "Investigations into the within-host genomic diversity and phenotypic variation of Plasmodium falciparum". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.202.

Mwenge, L, Sande, L, Mangenah, C, Ahmed, N, Kanema, S, d'Elbee, M, Sibanda, E, Kalua, T, Ncube, G, Johnson, CC, Hatzold, K, Cowan, FM, Corbett, EL, Ayles, H, Maheswaran, H and Terris-Prestholt, F (2017). HIV Self-Testing Africa (STAR) - Facility-based HIV testing cost data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.269.

N

Nash, S, Mentzer, AJ, Lule, SA, Kizito, D, Smits, G, van der Klis, FR and Elliott, A (2017). Entebbe Mother and Baby Study - Data at one year. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.128.

Ngufor, C, Fongnikin, A, Rowland, M and N'Guessan, R (2017). Indoor residual spraying with a mixture of clothianidin (a neonicotinoid insecticide) and deltamethrin provides improved control and long residual activity against pyrethroid resistant Anopheles gambiae sl in Southern Benin. [Data Collection]. Figshare. http://doi.org/10.1371/journal.pone.0189575

Nissen, F and Quint, JK (2017). Clinical Code List - Non-specific Asthma Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.209.

Nissen, F and Quint, JK (2017). Clinical Code List - Specific Asthma Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.210.

Nyundo, C, Doyle, AM, Walumbe, D, Otiende, M, Kinuthia, M, Amadi, D, Jibendi, B, Mochamah, G, Kihuha, N, Williams, TN, Ross, DA and Bauni, E (2017). Dataset Files 1 and 2 for version 1 of "Linking health facility data from young adults aged 18-24 years to longitudinal demographic data: Experience from The Kilifi Health and Demographic Surveillance System". [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.5202850.v1

O

Ofori-Anyinam, B, Dolganov, G, Van, T, Davis, JL, Walter, ND, Garcia, BJ, Voskuil, M, Fissette, K, Diels, M, Driesen, M, Meehan, CJ, Yeboah-Manu, D, Coscolla, M, Gagneux, S, Antonio, M, Schoolnik, G, Gehre, F and de Jong, BC (2017). Significant under expression of the DosR regulon in M. tuberculosis complex lineage 6 in sputum. [Data Collection]. Tuberculosis. https://doi.org/10.1016/j.tube.2017.03.001

Oswald, W and Okiya, S (2017). TUMIKIA Project Household Questionnaire & Stool Sample Collection Form. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001311.

Oswald, W and Witek-McManus, S (2017). TUMIKIA Project Laboratory Kato-Katz Forms. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001312.

P

Pang, J, Hildon, ZJ, Thein, TL, Jin, J and Leo, YS (2017). Assessing changes in knowledge, attitude and practices on dengue diagnosis and management among primary care physicians after the largest dengue epidemic in Singapore. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.3804673

Patel, V, Nadkarni, A, Bhat, B, McDaid, D and Weiss, H (2017). PREMIUM twelve-month follow-up trial: Clinical Outcomes and Cost-effectiveness dataset from the Counselling for Alcohol Problems (CAP) RCT. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.206.

Patel, V, Weobong, B, Bhat, B, McDaid, D and Weiss, H (2017). PREMIUM twelve-month follow-up trial: Clinical Outcomes and Cost-effectiveness dataset from the Healthy Activity Program (HAP) RCT. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.205.

Perrin, A, Larsonneur, E, Nicholson, AC, Edwards, DJ, Gundlach, KM, Whitney, AM, Gulvik, CA, Bell, ME, Rendueles, O, Cury, J, Hugon, P, Clermont, D, Enouf, V, Loparev, V, Juieng, P, Monson, T, Warshauer, D, Elbadawi, LI, Walters, MS, Crist, MB, Noble-Wang, J, Borlaug, G, Rocha, EPC, Criscuolo, A, Touchon, M, Davis, JP, Holt, KE, McQuiston, JR and Brisse, S (2017). Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain. [Data Collection]. Nature Communications. https://doi.org/10.1038/ncomms15483

Pickering, H, Burr, SE, Derrick, T, Makalo, P, Joof, H, Hayward, RD and Martin J., MJ (2017). Profiling and validation of individual and patterns of Chlamydia trachomatis-specific antibody responses in trachomatous trichiasis. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.3716170.

Pickering, S, Hué, S, Kim, E, Reddy, S, Wolinsky, SM and Neil, SJD (2017). Preservation of Tetherin and CD4 Counter-Activities in Circulating Vpu Alleles despite Extensive Sequence Variation within HIV-1 Infected Individuals. [Data Collection]. Figshare. https://doi.org/10.1371/journal.ppat.1003895

Pocock, NS, Tadee, R, Tharawan, K, Rongrongmuang, W, Kiss, L, Zimmerman, C and Adamson, F (2017). Occupational risks, health needs and victim identification of trafficked fishermen in the Greater Mekong Subregion – Interview transcripts. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000709.

Proaño, A, Bravard, MA, López, JW, Lee, GO, Bui, D, Datta, S, Comina, G, Zimic, M, Coronel, J, Caviedes, L, Cabrera, JL, Salas, A, Ticona, E, Vu, NM, Kirwan, DE, Loader, MI, Friedland, JS, Moore, DAJ, Evans, CA, Tracey, BH and Gilman, RH (2017). Data from: Dynamics of cough frequency in adults undergoing treatment for pulmonary tuberculosis. [Data Collection]. Dryad Digital Repository. https://doi.org/10.5061/dryad.gv234

R

Roberts, C (2017). FPC Grader. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.1116798

Roberts, C (2017). Open Data Kit PDF Report Creator. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://github.com/chrissyhroberts/ODK_PDF_Reports

Rossell, D and Rubio, FJ (2017). Tractable Bayesian variable selection: beyond normality. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.5410747.v1

Ruis, C, Roy, S, Brown, JR, Allen, DJ, Goldstein, RA and Breuer, J (2017). The emerging GII.P16-GII.4 Sydney 2012 norovirus lineage is circulating worldwide, arose by late-2014 and contains polymerase changes that may increase virus transmission. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0179572

Runcharoen, C, Moradigaravand, D, Blane, B, Paksanont, S, Thammachote, J, Anun, S, Parkhill, J, Chantratita, N and Peacock, SJ (2017). Whole genome sequencing reveals high-resolution epidemiological links between clinical and environmental Klebsiella pneumoniae. [Data Collection]. Figshare. ..

S

Sabatini, R, Stortz, JA, Serafim, TD, Alsford, S, Wilkes, J, Fernandez-Cortes, F, Hamilton, G, Briggs, E, Lemgruber, L, Horn, D, Mottram, JC and McCulloch, R (2017). Genome-wide and protein kinase-focused RNAi screens reveal conserved and novel damage response pathways in Trypanosoma brucei. [Data Collection]. Figshare. https://doi.org/10.1371/journal.ppat.1006477

Saffari, A and Silver, M (2017). DNA methylation in children from The Gambia. [Data Collection]. NCBI Gene Expression Omnibus (GEO). https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE99863

Sanya, RE, Tumwesige, E, Elliott, AM and Seeley, J (2017). Perceptions about interventions to control schistosomiasis among the Lake Victoria island communities of Koome, Uganda. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0005982

Schmidt, W (2017). Data for "Effect of a school-based hygiene behavior change campaign on handwashing with soap in Bihar, India: cluster-randomized trial". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000705.

Schnapp, LM, Blount, RJ, Daly, KR, Fong, S, Chang, E, Grieco, K, Greene, M, Stone, S, Balmes, J, Miller, RF, Walzer, PD and Huang, L (2017). Effects of clinical and environmental factors on bronchoalveolar antibody responses to Pneumocystis jirovecii: A prospective cohort study of HIV+ patients. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pone.0180212

Seale, AC, Bianchi-jassir, F, Russell, N, Kohli-lynch, M, Tann, C, Hall, J, Madrid, L, Blencowe, H, Cousens, S, Baker, C, Bartlett, L, Cutland, C, Gravett, M, Heath, P, Ip, M, Le Doare, K, Madhi, S, Rubens, CE, Saha, S, Schrag, S, Sobanjo-ter Meulen, A, Vekemans, J and Lawn, JE (2017). Data for: "Estimates of the Burden of Group B Streptococcal Disease Worldwide for Pregnant Women, Stillbirths, and Children". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.51.

Sedekia, Y, Nathan, R, Church, K, Temu, S, Hanson, C, Schellenberg, J and Marchant, T (2017). Data for: "Delaying first birth: an analysis of household survey data from rural Southern Tanzania". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Spika, D, Bannon, F, Bonaventure, A, Woods, LM, Harewood, R, Carreira, H, Coleman, MP and Allemani, C (2017). Life tables for global surveillance of cancer survival (the CONCORD programme): data sources and methods. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.3704431.

T

Tang, W, Chen, W, Amini, A, Boeras, D, Falconer, J, Kelly, H, Peeling, R, Varsaneux, O, Tucker, JD and Easterbrook, P (2017). Diagnostic accuracy of tests to detect Hepatitis C antibody: a meta-analysis and review of the literature. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.3919648.v1

The, HC, Florez de Sessions, P, Jie, S, Pham Thanh, D, Thompson, CN, Nguyen Ngoc Minh, C, Chu, CW, Tran, T, Thomson, NR, Thwaites, GE, Rabaa, MA, Hibberd, M and Baker, S (2017). Assessing gut microbiota perturbations during the early phase of infectious diarrhea in Vietnamese children. [Data Collection]. Gut microbes. http://www.tandfonline.com/doi/suppl/10.1080/19490976.2017.1361093

Tobías, A, Armstrong, B and Gasparrini, A (2017). R Code and Data for: "Investigating Uncertainty in the Minimum Mortality Temperature: Methods and Application to 52 Spanish Cities". [Data Collection]. Github. https://github.com/gasparrini/2017_tobias_Epidem_Rcodedata

V

VanHoek, A (2017). Economic evaluation of HIV-exposure Prophylaxis among men who have sex with men in England: Supplementary material. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/PUBS.04433707

Vicedo-cabrera, AM, Forsberg, B, Tobias, A, Zanobetti, A, Schwartz, J, Armstrong, B and Gasparrini, A (2017). R code and data for: "Associations of Inter- and Intraday Temperature Change With Mortality". [Data Collection]. Github. https://github.com/gasparrini/2016_vicedo-cabrera_AJE_Rcodedata

van Kleef, E, Luangasanatip, N, Bonten, MJ and Cooper, BS (2017). R code: why sensitive bacteria are resistant to hospital infection control. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.5281/zenodo.1045530

W

Walsham, M, Kuper, H, Banks, M and Blanchet, K (2017). Social Protection & Disability in Asia-Pacific & Africa dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.265.

Watson, CH, Coriakula, J, Ngoc, DTT, Flasche, S, Kucharski, AJ, Lau, CL, Thieu, NTV, le Polain de Waroux, O, Rawalai, K, Van, TT, Taufa, M, Baker, S, Nilles, EJ, Kama, M and Edmunds, WJ (2017). Social mixing in Fiji: Who-eats-with-whom contact patterns and the implications of age and ethnic heterogeneity for disease dynamics in the Pacific Islands. [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0186911

Weill, F, Domman, D, Njamkepo, E, Tarr, C, Rauzier, J, Fawal, N, Keddy, KH, Salje, H, Moore, S, Mukhopadhyay, AK, Bercion, R, Luquero, FJ, Ngandjio, A, Dosso, M, Monakhova, E, Garin, B, Bouchier, C, Pazzani, C, Mutreja, A, Grunow, R, Sidikou, F, Bonte, L, Breurec, S, Damian, M, Njanpop-Lafourcade, B, Sapriel, G, Page, A, Hamze, M, Henkens, M, Chowdhury, G, Mengel, M, Koeck, J, Fournier, J, Dougan, G, Grimont, PAD, Parkhill, J, Holt, KE, Piarroux, R, Ramamurthy, T, Quilici, M and Thomson, NR (2017). Genomic history of the seventh pandemic of cholera in Africa. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.5314822.v3

Weiss, H, Nakinyingi-Miiro, J, Sembajjwe, W and Gibson, L (2017). MENISCUS SMC dataset. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.208.

Wilson, E, Free, C, Morris, TP, Syred, J, Ahamed, I, Menon-Johansson, AS, Palmer, MJ, Barnard, S, Rezel, E and Baraitser, P (2017). S1 Data for "Internet-accessed sexually transmitted infection (e-STI) testing and results service: A randomised, single-blind, controlled trial". [Data Collection]. PLOS Medicine. https://doi.org/10.1371/journal.pmed.1002479.s001

Wing, K, Bhaskaran, K, Pealing, L, Root, A, Smeeth, L, Van Staa, TP, Klungel, OH, Reynolds, RF and Douglas, IJ (2017). Clinical Code List - Exclusion Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Wing, K, Bhaskaran, K, Pealing, L, Root, A, Smeeth, L, van Staa, TP, Klungel, OH, Reynolds, RF and Douglas, IJ (2017). Clinical Code List - Liver Injury Codes. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Wing, K, Bhaskaran, K, Pealing, L, Root, A, Smeeth, L, van Staa, TP, Klungel, OH, Reynolds, RF and Douglas, IJ (2017). Therapy Code List - Concomitant Liver Injury Drugs. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Wing, K, Bhaskaran, K, Pealing, L, Root, A, Smeeth, L, van Staa, TP, Klungel, OH, Reynolds, RF and Douglas, IJ (2017). Therapy Code List - Flucloxacillin. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.

Wing, K, Bhaskaran, K, Pealing, L, Root, A, Smeeth, L, van Staa, TP, Klungel, OH, Reynolds, RF and Douglas, IJ (2017). Therapy Code List - Oxytetracycline. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.