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Data Collection
Abolins, S, King, E, Lazarou, L, Weldon, L, Hughes, L, Drescher, P, Raynes, J, Hafalla, J, Viney, ME and Riley, E (2017). Supplementary Data for: "The comparative immunology of wild and laboratory mice, Mus musculus domesticus". [Data Collection]. Nature Communications. https://doi.org/10.1038/ncomms14811
Abolins, S, Lazarou, L, Weldon, L, Hughes, L, King, EC, Drescher, P, Pocock, MJO, Hafalla, JCR, Riley, EM and Viney, M (2018). The ecology of immune state in a wild mammal, Mus musculus domesticus. [Data Collection]. PLOS Biology. https://doi.org/10.1371/journal.pbio.2003538
Abolins, S, Lazarou, L, Weldon, L, Hughes, L, King, EC, Drescher, P, Pocock, MJO, Hafalla, JCR, Riley, EM and Viney, M (2018). The ecology of immune state in a wild mammal, Mus musculus domesticus. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pbio.2003538
Agomo, CO, Oyibo, WA, Sutherland, C, Hallet, R and Oguike, MC (2016). Data from: Assessment of markers of antimalarial drug resistance in Plasmodium falciparum isolates from pregnant women in Lagos, Nigeria. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.b3f50
Anderson, ST, Coin, LJ, Crampin, AC, Dockrell, HM, Eley, B, French, N, Heyderman, RS, Hibberd, ML, Kaforou, M, Kern, F, Langford, PR, Levin, M, Ling, L, Wilkinson, RJ and Wright, VJ (2013). Genome-wide transcriptional profiling of HIV positive and negative adults with active tuberculosis, latent TB infection and other diseases. [Data Collection]. NCBI Gene Expression Omnibus. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE37250
Andreu, N, Phelan, J, de Sessions, PF, Cliff, JM, Clark, T and Hibberd, M (2017). Primary macrophages and J774 cells respond differently to infection with Mycobacterium tuberculosis. [Data Collection]. Gene Expression Omnibus. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE88801
Ansari, HR, Templeton, TJ, Subudhi, AK, Ramaprasad, A, Tang, J, Lu, F, Naeem, R, Hashish, Y, Oguike, MC, Benavente, ED, Clark, TG, Sutherland, CJ, Barnwell, JW, Culleton, R, Cao, J and Pain, A (2016). Genome-scale comparison of expanded gene families in Plasmodium ovale wallikeri and Plasmodium ovale curtisi with Plasmodium malariae and with other Plasmodium species. [Data Collection]. International Journal for Parasitology. https://doi.org/10.1016/j.ijpara.2016.05.009.
Anvikar, AR, Anna Maria van Eijk, Shah, A, Upadhyay, KJ, Sullivan, S, Patel, AJ, Joshi, JM, Tyagi, S, Singh, R, Gupta, H, Wassmer, S and Carlton, J (2020). Dataset: India ICEMR Severe P. vivax and falciparum Cohort. [Data Collection]. ClinEpiDB. https://clinepidb.org/ce/app/workspace/analyses/DS_3b4a4e8f09
Barry, A, Behet, MC, Nébié, I, Lanke, K, Grignard, L, Ouedraogo, A, Soulama, I, Drakeley, C, Sauerwein, R, Bolscher, JM, Dechering, KJ, Bousema, T, Tiono, AB and Gonçalves, BP (2019). Data from: Functional antibodies against Plasmodium falciparum sporozoites are associated with a longer time to qPCR-detected infection among schoolchildren in Burkina Faso. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.n1m33qq
Borg, Y, Alsford, S, Zaikin, A and Nesbeth, D (2021). Images of selected cells of the TbGOS02 recombinant Trypanosoma brucei brucei cell line. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14845035.v1
Borg, Y, Alsford, S, Zaikin, A and Nesbeth, D (2021). Sequence of the UbeK trypanosomal degron. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14845035.v1
Bousema, T, Meibalan, E, Barry, A, Gibbins, M, Awandu, S, Meerstein-Kessel, L, Achar, F, Bopp, S, Moxon, C, Diarra, A, Debe, S, Ouedraogo, N, Barry-Some, I, Badoum, E, Fagnima, T, Lanke, K, Goncalves, B, Bradley, J, Wirth, D, Drakeley, C, Guelbeogo, W, Tiono, A, Marti, M, Gibbins, MP, Achcar, F, Ouédraogo, N, Badoum, ES, Fagnima, T, Gonçalves, BP, Guelbeogo, WM and Tiono, AB (2021). Plasmodium falciparum gametocyte density and infectivity in peripheral blood and skin tissue of naturally infected parasite carriers in Burkina Faso. [Data Collection]. Dryad. https://doi.org/10.5061/dryad.g1jwstqmk
Camacho, A, Kucharski, AJ, Aki-Sawyerr, Y, White, MA, Flasche, S, Baguelin, M, Pollington, TM, Carney, J, Glover, R, Smout, E, Tiffany, A, Edmunds, WJ and Funk, S (2015). Bed capacity for Ebola patients in Sierra Leone. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.1304889.v1
Cerdeira, L and Dyson, ZA (2022). zadyson/TyphiNET. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.5338903
Chidambaram, JD, Bauer, J, Holland, M, Burton, M, Prajna, NV, Srikanthi, P, Lalitha, P, Elakkiya, S and Lanjewar, S (2014). Transcriptome data for bacterial and fungal keratitis compared to cadaver cornea. [Data Collection]. ArrayExpress. http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-58291/
Cliff, J, Cho, J, Lee, J, Ronacher, K, King, E, van Helden, P, Walzl, G and Dockrell, H (2015). Comparison of M. tuberculosis and M. bovis BCG in diluted whole blood cultures. [Data Collection]. ArrayExpress. http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-45386/
Cliff, J, Cho, J, Lee, J, Ronacher, K, King, E, van Helden, P, Walzl, G and Dockrell, H (2015). Excessive Cytolytic Responses Predict Tuberculosis Relapse After Apparently Successful Treatment. [Data Collection]. ArrayExpress. http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-67589/
Cliff, J, Lee, J, Constantinou, N, Cho, J, Clark, TG, Ronacher, K, King, EC, Lukey, PT, Duncan, K, Van Helden, PD, Walzl, G and Dockrell, HM (2012). Tuberculosis Patients Blood Gene Expression Through Treatment. [Data Collection]. ArrayExpress. http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-31348/
Cliff, J, Lee, J, Constantinou, N, Cho, J, Clark, TG, Ronacher, K, King, EC, Lukey, PT, Duncan, K, Van Helden, PD, Walzl, G and Dockrell, HM (2012). Tuberculosis Patients Blood Gene Expression Through Treatment (cured and end-of-treatment patients). [Data Collection]. ArrayExpress. http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-36238/
Collett, CF, Kitson, C, Baker, N, Steele-stallard, HB, Santrot, MV, Hutchinson, S, Horn, D and Alsford, S (2019). Chemogenomic profiling of anti-leishmanial efficacy and resistance in the related kinetoplastid parasite Trypanosoma brucei. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/data/view/PRJEB31973
Cortes, T (2021). E-MTAB-8835 - Ribosome profiling of Mycobacterium tuberculosis under nutrient starvation. [Data Collection]. ArrayExpress. https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-8835/
Cunha, MG, Silva, ES, Sepúlveda, N, Costa, SPT, Saboia, TC, Guerreiro, JF, Póvoa, MM, Corran, PH, Riley, E and Drakeley, CJ (2021). Serologically Defined Variations in Malaria Endemicity in Pará State, Brazil. Supplementary dataset. [Data Collection]. PLOS ONE. https://doi.org/10.1371/journal.pone.0260513.s001
Currier, RB, Cooper, A, Burrell-saward, H, MacLeod, A and Alsford, S (2018). Decoding the network of Trypanosoma brucei proteins that determines sensitivity to apolipoprotein-L1. [Data Collection]. Figshare. https://doi.org/10.1371/journal.ppat.1006855
Diez Benavente, E, Florez de Sessions, P, Moon, RW, Holder, AA, Blackman, MJ, Roper, C, Drakeley, CJ, Pain, A, Sutherland, CJ, Hibberd, ML, Campino, S and Clark, TG (2017). Analysis of nuclear and organellar genomes of Plasmodium knowlesi in humans reveals ancient population structure and recent recombination among host-specific subpopulations. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pgen.1007008
Dorman, MJ, Domman, D, Poklepovich, T, Tolley, C, Zolezzi, G, Kane, L, Viñas, MR, Panagópulo, M, Moroni, M, Binsztein, N, Caffer, MI, Clare, S, Dougan, G, Salmond, GPC, Parkhill, J, Campos, J and Thomson, NR (2020). Supporting data for "Genomics of the Argentinian cholera epidemic elucidate the contrasting dynamics of epidemic and endemic Vibrio cholerae". [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.11310131.v1
Dorman, M, Thomson, NR and Campos, J (2021). Genomic contextualisation of ancient DNA molecular data from an Argentinian fifth pandemic Vibrio cholerae infection. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14384225.v1
Dorman, M, Thomson, NR and Campos, J (2021). Supporting data for "Genomic contextualisation of ancient DNA molecular data from an Argentinian fifth pandemic Vibrio cholerae infection". [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.13636577.v1
Dorsey, G, Kamya, M, Greenhouse, B, Arinaitwe, E, Kilama, M, Mayanja-Kizza, H, Nankabirwa, J, Katureebe, A, Kakande, E, Rek, J, Nsobya, S, Kiggundu, M, Mawejje, H, Nzarubara, B, Lavoy, G, Ruhamyankaka, E, Kigozi, S, Rosenthal, P, Rodriguez-Barraquer, I, Charlebois, E, Clark, T, Staedke, SG, Drakeley, C, Donnelly, M, Lindsay, S, Smith, D and Tatem, A (2020). PRISM ICEMR Cohort. [Data Collection]. ClinEpiDB. https://clinepidb.org/ce/app/record/dataset/DS_0ad509829e
Eckold, C, van Doorn, CL, Dockrell, H, Ottenhoff, TH, Vianello, E and Cliff, JM (2023). Impaired resolution of blood transcriptomes through tuberculosis treatment with diabetes comorbidity. [Data Collection]. NCBI Gene Expression Omnibus. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE193978
Fennell, TG, Blackwell, GA, Thomson, NR and Dorman, MJ (2021). gbpA and chiA genes are not uniformly distributed amongst diverse Vibrio cholerae. [Data Collection]. Microbiology Society. https://doi.org/10.6084/m9.figshare.14398688.v1
Fletcher, HA, Filali-Mouhim, A, Nemes, E, Hawkridge, A, Keyser, A, Njikan, S, Hatherill, M, Scriba, TJ, Abel, B, Kagina, BM, Veldsman, A, Agudelo, NM, Kaplan, G, Hussey, GD, Sekaly, R and Hanekom, WA (2014). PBMC expression profiles of BCG vaccine protected infants and of BCG vaccinated infants who develop tuberculosis disease. [Data Collection]. NCBI Gene Expression Omnibus. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE20716
Fletcher, HA, Keyser, A, Bowmaker, M, Sayles, P, Kaplan, G, Hussey, G, Hill, A and Hanekom, W (2009). Transcriptional profiling of mycobacterial antigen-induced responses in infants vaccinated with BCG at birth. [Data Collection]. NCBI Gene Expression Omnibus. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE14408
Fuehrer, H, Dombrowski, JG, Barateiro, A, Peixoto, EPM, Barros, André Boler Cláudio da Silva, Souza, RMd, Clark, TG, Campino, S, Wrenger, C, Wunderlich, G, Palmisano, G, Epiphanio, S, Gonçalves, LA and Marinho, CRF (2021). Study database for: "Adverse pregnancy outcomes are associated with Plasmodium vivax malaria in a prospective cohort of women from the Brazilian Amazon". [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0009390.s009
Fujisawa, K, Silcott-Niles, C, Simonson, P, Lamattina, D, Humeres, CA, Bhattacharyya, T, Mertens, P, Thunissen, C, O’Rourke, V, Pańczuk, M, Whitworth, JA, Salomón, OD and Miles, MA (2021). Consolidated results of dogs in the 2018 and 2019 studies. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0009552.s001
Geary, TG, Ingram-Sieber, K, Cowan, N, Panic, G, Vargas, M, Mansour, N, Bickle, Q, Wells, TNC, Spangenberg, T and Keiser, J (2014). Orally Active Antischistosomal Early Leads Identified from the Open Access Malaria Box. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0002610.
Gibson, AJ, Passmore, IJ, Faulkner, V, Xia, D, Nobeli, I, Stiens, J, Willcocks, S, Clark, TG, Sobkowiak, B, Werling, D, Villarreal-Ramos, B, Wren, BW and Kendall, SL (2021). Table_1_Probing Differences in Gene Essentiality Between the Human and Animal Adapted Lineages of the Mycobacterium tuberculosis Complex Using TnSeq.XLSX. [Data Collection]. Frontiers. https://doi.org/10.3389/fvets.2021.760717.s002
Giraud, E, Rogers, M, Bates, P and Dillon, R (2014). Transcript abundance comparison between BALB/c ears inoculated with Leishmania mexicana and Leishmania mexicana plus promastigote secretory gel (PSG). [Data Collection]. ArrayExpress. http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-52101/
Gliddon, HD, Kaforou, M, Alikian, M, Habgood-Coote, D, Zhou, C, Oni, T, Anderson, ST, Brent, AJ, Crampin, AC, Eley, B, Heyderman, R, Kern, F, Langford, PR, Ottenhoff, THM, Hibberd, ML, French, N, Wright, VJ, Dockrell, HM, Coin, LJ, Wilkinson, RJ and Levin, M (2021). Identification of Reduced Host Transcriptomic Signatures for Tuberculosis Disease and Digital PCR-Based Validation and Quantification. [Data Collection]. Frontiers in Immunology. https://doi.org/10.3389/fimmu.2021.637164.s001
Heinz, E, Brindle, R, Morgan-McCalla, A, Peters, K and Thomson, N (2019). Supporting data for: "Caribbean multi-centre study of Klebsiella pneumoniae: whole-genome sequencing, antimicrobial resistance and virulence factors". [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.7867760.v1
Herman, LS, Fornace, K, Phelan, J, Grigg, MJ, Anstey, NM, William, T, Moon, RW, Blackman, MJ, Drakeley, CJ and Tetteh, KKA (2018). Identification and validation of a novel panel of Plasmodium knowlesi biomarkers of serological exposure. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0006457
Hogset, H, Horgan, C, Armstrong, J, Bergholt, M, Torraca, V, Chen, Q, Keane, T, Burgeon, L, Dallman, M, Mostowy, S and Stevens, M (2020). Research data supporting "In Vivo Biomolecular Imaging of Zebrafish Embryos using Confocal Raman Spectroscopy". [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4059923
Holt, KE, Dyson, ZA, Hawkey, J and flashton2003 (2024). typhoidgenomics/genotyphi. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4707613
Holt, KE, Hawkey, J and Paranagama, K (2021). katholt/sonneityping: v20210201. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4609812
Holt, KE, Lam, M and Wick, R (2020). Kleborate v2.0.0. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.4923014
Khan, NH, Messenger, LA, Wahid, S and Sutherland, CJ (2016). Phylogenetic position of Leishmania isolates from Khyber Pakhtunkhwa province of Pakistan. [Data Collection]. Experimental Parasitology. https://doi.org/10.1016/j.exppara.2016.05.006.
Knuepfer, E, Wright, KE, Kumar Prajapati, S, Rawlinson, TA, Mohring, F, Koch, M, Lyth, OR, Howell, SA, Villasis, E, Snijders, AP, Moon, RW, Draper, SJ, Rosanas-urgell, A, Higgins, MK, Baum, J and Holder, AA (2019). Divergent roles for the RH5 complex components, CyRPA and RIPR in human-infective malaria parasites. [Data Collection]. PLOS Pathogens. https://doi.org/10.1371/journal.ppat.1007809
Labadie, T and Roy, P (2020). A non enveloped arbovirus released in lysosome-derived extracellular vesicles induces super infection exclusion. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.13066910.v1
Laban, N (2021). Comparable exposure to SARS-CoV-2 in young children and healthcare workers in Zambia. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14237285.v2
Lay, C, Chu, CW, Purbojati, RW, Acerbi, E, Drautz-Moses, DI, de Sessions, PF, Jie, S, Ho, E, Kok, YJ, Bi, X, Chen, S, Mak, SY, Chua, MC, Goh, AEN, Chiang, WC, Rao, R, Chaithongwongwatthana, S, Khemapech, N, Chongsrisawat, V, Martin, R, Koh, Y, Lohar, SR, Tan, ICH, Anng, WA, Jie, C, Bartke, N, Ben-Amor, K, Renes, IB, Wong, F, Roeselers, G, Ho, YS, Hibberd, ML, Schuster, SC and Knol, J (2021). Data for: "A synbiotic intervention modulates meta-omics signatures of gut redox potential and acidity in elective caesarean born infants". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom.
Leurent, B, Gomes, M, Cro, S, Wiles, N and Carpenter, JR (2019). CEmimix Stata do-file - First version. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.8168021.v1
London School of Hygiene & Tropical Medicine (2021). Sequencing of M/XDR isoaltes from Pakistan. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/browser/view/PRJEB43284
London School of Hygiene & Tropical Medicine (2020). TB WGS Tanzania. [Data Collection]. European Nucleotide Archive. https://www.ebi.ac.uk/ena/data/view/PRJEB29435
Lule, SA, Mawa, P, Nkurunungi, G, Nampijja, M, Kizito, D, Akello, F, Muhangi, L, Elliott, A and Webb, EL (2014). Factors associated with tuberculosis infection, and with anti-mycobacterial immune responses, among five year olds BCG-immunised at birth in Entebbe, Uganda. [Data Collection]. Vaccine. https://doi.org/10.1016/j.vaccine.2014.12.015.
Lynham, S and Dawson, L (2021). C. difficle p-cresol production. [Data Collection]. ProteomeXchange. http://proteomecentral.proteomexchange.org/PXD028948
Mansour, NR, Paveley, R, Gardner, JMF, Bell, AS, Parkinson, T and Bickle, Q (2016). High Throughput Screening Identifies Novel Lead Compounds with Activity against Larval, Juvenile and Adult Schistosoma mansoni. S1 Table. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0004659.s001
Mansour, NR, Paveley, R, Gardner, JMF, Bell, AS, Parkinson, T and Bickle, Q (2016). High Throughput Screening Identifies Novel Lead Compounds with Activity against Larval, Juvenile and Adult Schistosoma mansoni. S2 Table. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0004659.s002
Marlais, T (2019). Diagnostics development for the neglected parasitic diseases strongyloidiasis and visceral leishmaniasis. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/PUBS.04654991
McNeill, E, Stylianou, E, Crabtree, MJ, Harrington-Kandt, R, Kolb, A, Diotallevi, M, Hale, AB, Bettencourt, P, Tanner, R, O’Shea, MK, Matsumiya, M, Lockstone, H, Müller, J, Fletcher, HA, Greaves, DR, McShane, H and Channon, KM (2018). Regulation of mycobacterial infection by macrophage Gch1 and tetrahydrobiopterin. [Data Collection]. Nature Communications. https://doi.org/10.1038/s41467-018-07714-9
Moore, CE, Elwin, K, Phot, N, Seng, C, Mao, S, Suy, K, Kumar, V, Nader, J, Bousfield, R, Perera, S, Bailey, JW, Beeching, NJ, Day, NPJ, Parry, CM and Chalmers, RM (2016). Molecular Characterization of Cryptosporidium Species and Giardia duodenalis from Symptomatic Cambodian Children. [Data Collection]. PLoS neglected tropical diseases. http://dx.doi.org/10.1371/journal.pntd.0004822.s002
Mousa, A, Al-Taiar, A, Anstey, NM, Badaut, C, Barber, BE, Bassat, Q, Challenger, JD, Cunnington, AJ, Datta, D, Drakeley, C, Ghani, AC, Gordeuk, VR, Grigg, MJ, Hugo, P, John, CC, Mayor, A, Migot-Nabias, F, Opoka, RO, Pasvol, G, Rees, C, Reyburn, H, Riley, EM, Shah, BN, Sitoe, A, Sutherland, CJ, Thuma, PE, Unger, SA, Viwami, F, Walther, M, Whitty, CJM, William, T and Okell, LC (2020). S1 Data - The impact of delayed treatment of uncomplicated P. falciparum malaria on progression to severe malaria: A systematic review and a pooled multicentre individual-patient meta-analysis. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pmed.1003359.s031
Mousa, A, Al-Taiar, A, Anstey, NM, Badaut, C, Barber, BE, Bassat, Q, Challenger, JD, Cunnington, AJ, Datta, D, Drakeley, C, Ghani, AC, Gordeuk, VR, Grigg, MJ, Hugo, P, John, CC, Mayor, A, Migot-Nabias, F, Opoka, RO, Pasvol, G, Rees, C, Reyburn, H, Riley, EM, Shah, BN, Sitoe, A, Sutherland, CJ, Thuma, PE, Unger, SA, Viwami, F, Walther, M, Whitty, CJM, William, T and Okell, LC (2020). S2 Data - The impact of delayed treatment of uncomplicated P. falciparum malaria on progression to severe malaria: A systematic review and a pooled multicentre individual-patient meta-analysis. [Data Collection]. Figshare. https://doi.org/10.1371/journal.pmed.1003359.s032
Msellemu, D, Namango, HI, Mwakalinga, VM, Ntamatungiro, AJ, Mlacha, Y, Mtema, ZJ, Kiware, S, Lobo, NF, Majambere, S, Dongus, S, Drakeley, CJ, Govella, NJ, Chaki, PP and Killeen, GF (2016). The epidemiology of residual Plasmodium falciparum malaria transmission and infection burden in an African city with high coverage of multiple vector control measures. [Data Collection]. Malaria Journal. https://doi.org/10.1186/s12936-016-1340-4.
Murphy, N, Cardinal, MV, Bhattacharyya, T, Enriquez, GF, Macchiaverna, NP, Alvedro, A, Freilij, H, Martinez de Salazar, P, Molina, I, Mertens, P, Gilleman, Q, Gürtler, RE and Miles, MA (2021). Additional file 5 of Assessing antibody decline after chemotherapy of early chronic Chagas disease patients. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.16841066.v1
Muthui, MK, Takashima, E, Omondi, BR, Kinya, C, Muasya, WI, Nagaoka, H, Mwai, K, Orindi, B, Wambua, J, Bousema, T, Drakeley, C, Blagborough, AM, Marsh, K, Bejon, P and Kapulu, MC (2021). Replication data for: Characterization of naturally acquired immunity to a panel of antigens expressed in mature P. falciparum gametocytes. [Data Collection]. Harvard Dataverse. https://doi.org/10.7910/DVN/WL8TRW
Nampijja, M (2018). The role of the home environment in neurocognitive development of children in Uganda. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000792.
Ochola-Oyier, LI, Okombo, J, Wagatua, N, Ochieng, J, Tetteh, KK, Fegan, G, Bejon, P and Marsh, K (2016). MOESM4 of Comparison of allele frequencies of Plasmodium falciparum merozoite antigens in malaria infections sampled in different years in a Kenyan population. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.3603686_D5.v1
Pickering, H, Hart, JD, Burr, S, Stabler, R, Maleta, K, Kalua, K, Bailey, RL and Holland, MJ (2022). Additional file 1 of Impact of azithromycin mass drug administration on the antibiotic-resistant gut microbiome in children: a randomized, controlled trial. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.17982643.v1
Prior, KF, Middleton, B, Owolabi, AT, Westwood, ML, Holland, J, O'Donnell, AJ, Blackman, MJ, Skene, DJ and Reece, SE (2021). Blood glucose concentration time series in mice infected with malaria parasites. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14912709.v2
Prior, KF, Middleton, B, Owolabi, AT, Westwood, ML, Holland, J, O'Donnell, AJ, Blackman, MJ, Skene, DJ and Reece, SE (2021). Plasmodium chabaudi genotype DK parasite stages during time series. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14842695.v1
Prior, KF, Middleton, B, Owolabi, AT, Westwood, ML, Holland, J, O'Donnell, AJ, Blackman, MJ, Skene, DJ and Reece, SE (2021). Plasmodium schizont densities in culture grown with and without isoleucine, as well as isoleucine starvation for different durations of time. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14842716.v1
Prior, KF, Middleton, B, Owolabi, AT, Westwood, ML, Holland, J, O'Donnell, AJ, Blackman, MJ, Skene, DJ and Reece, SE (2021). Plasmodium schizont proportion in culture grown with and without isoleucine. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14842713.v1
Prior, KF, Middleton, B, Owolabi, AT, Westwood, ML, Holland, J, O'Donnell, AJ, Blackman, MJ, Skene, DJ and Reece, SE (2021). Targeted metabolomics on malaria-infected mouse blood. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.14842638.v1
Rahman, SIA, Dyson, ZA, Klemm, EJ, Khanam, F, Holt, KE, Chowdhury, EK, Dougan, G and Qadri, F (2020). Population structure and antimicrobial resistance patterns of Salmonella Typhi isolates in urban Dhaka, Bangladesh from 2004 to 2016. [Data Collection]. PLOS Neglected Tropical Diseases. https://doi.org/10.1371/journal.pntd.0008036
Ryan Wick, Holt, KE, marlam89, kelwyres, Maranga, M, Petit III, RA, da Silva, AG, Deveaud, E, Lampa, S and Stanton, T (2024). klebgenomics/Kleborate: v3.0.0. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.13683348
Scriba, TJ, Kimuda, SG, Biraro, IA, Bagaya, BS, Raynes, JG and Cose, S (2018). S1 Data File for: "Characterising antibody avidity in individuals of varied Mycobacterium tuberculosis infection status using surface plasmon resonance". [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0205102.s007
Sepúlveda, N, Phelan, J, Diez-Benavente, E, Campino, S, Clark, TG, Hopkins, H, Sutherland, C, Drakeley, CJ and Beshir, KB (2018). Global analysis of Plasmodium falciparum histidine-rich protein-2 ( pfhrp2 ) and pfhrp3 gene deletions using whole-genome sequencing data and meta-analysis. [Data Collection]. Infection, Genetics and Evolution. https://doi.org/10.1016/j.meegid.2018.04.039
Shitaye, G, Gadisa, E, Grignard, L, Shumie, G, Chali, W, Menberu, T, Belachew, M, Tegegn, G, Challi, S, Curry, J, Mahey, L, Hailu, T, Mamo, H, Menon, M, Balcha, T, Aseffa, A, Drakeley, C, Bousema, T and Tadesse, FG (2018). Low and heterogeneous prevalence of glucose-6-phosphate dehydrogenase deficiency in different settings in Ethiopia using phenotyping and genotyping approaches. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.c.4187285.v1
Sim, AYL, Huber, RG, Lim, XN, Ng, WC, Chawla, T, Aw, J, Lim, SY, Shen, Y, Boon, K, Choy, MM, Wilm, A, de Sessions, PF, Hibberd, M, Nagarajan, N, Ooi, EE, Bond, PJ, Sessions, OM and Wan, Y (2019). Genome organization of dengue and Zika viruses. [Data Collection]. NCBI Gene Expression Omnibus. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE106483
Simões, ML, Dong, Y, Mlambo, G and Dimopoulos, G (2022). C-type lectin 4 regulates broad-spectrum melanization-based refractoriness to malaria parasites. The underlying data for all graphs. [Data Collection]. PLOS Biology. https://doi.org/10.1371/journal.pbio.3001515.s012
Spadar, A, Phelan, J, Diez-Benavente, E, Campos, M, Gomez, LF, Mohareb, F, Clark, TG and Campino, S (2021). Data for: "Flavivirus integrations in Aedes aegypti are limited and highly conserved across samples from different geographic regions unlike integrations in Aedes albopictus". [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002482.
Spear, AM (2011). Identification and characterisation of bacterial TIR domains, with particular focus on yersinia pestis: Study Data. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00000080.
Stone, WJR, Campo, JJ, Ouédraogo, AL, Meerstein-Kessel, L, Morlais, I, Da, D, Cohuet, A, Nsango, S, Sutherland, CJ, van de Vegte-Bolmer, M, Siebelink-Stoter, R, van Gemert, G, Graumans, W, Lanke, K, Shandling, AD, Pablo, JV, Teng, AA, Jones, S, de Jong, RM, Fabra-García, A, Bradley, J, Roeffen, W, Lasonder, E, Gremo, G, Schwarzer, E, Janse, CJ, Singh, SK, Theisen, M, Felgner, P, Marti, M, Drakeley, C, Sauerwein, R, Bousema, T and Jore, MM (2018). Data from: Unravelling the immune signature of Plasmodium falciparum transmission-reducing immunity. [Data Collection]. Dryad Digital Repository. https://doi.org/10.5061/dryad.8bp05
Sutherland, C and Henrici, R (2020). The Plasmodium falciparum artemisinin susceptibility-associated AP-2 adaptin mu subunit is clathrin-independent and essential for schizont-maturation v2.0. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00001533.
Sutherland, C and Lubis, IN (2022). Plasmodium falciparum drug resistant genotypes - SUMUT study, North Sumatera, 2015. [Data Collection]. London School of Hygiene & Tropical Medicine, London, United Kingdom. https://doi.org/10.17037/DATA.00002720.
Tetteh, KKA (2020). Optimisation and standardisation of a multiplex immunoassay of diverse Plasmodium falciparum antigens to assess sero-epidemiological changes in malaria transmission. [Data Collection]. OSF. https://doi.org/10.17605/OSF.IO/AUJ35
Tsuboi, T, Grigg, M, Barber, BE, Marfurt, J, Imwong, M, William, T, Bird, E, Piera, KA, Aziz, A, Boonyuen, U, Drakeley, C, Cox, J, White, NJ, Cheng, Q, Yeo, TW, Auburn, S and Anstey, NM (2016). P. knowlesi DHFR sequence data. [Data Collection]. PLoS One. https://doi.org/10.1371/journal.pone.0149519.s001
Van Voorhis, WC, Adams, JH, Adelfio, R, Ahyong, V, Akabas, MH, Alano, P, Alday, A, Alemán Resto, Y, Alsibaee, A, Alzualde, A, Andrews, KT, Avery, SV, Avery, VM, Ayong, L, Baker, M, Baker, S, Ben Mamoun, C, Bhatia, S, Bickle, Q, Bounaadja, L, Bowling, T, Bosch, J, Boucher, LE, Boyom, FF, Brea, J, Brennan, M, Burton, A, Caffrey, CR, Camarda, G, Carrasquilla, M, Carter, D, Belen Cassera, M, Chih-Chien Cheng, K, Chindaudomsate, W, Chubb, A, Colon, BL, Colón-López, DD, Corbett, Y, Crowther, GJ, Cowan, N, D’Alessandro, S, Le Dang, N, Delves, M, DeRisi, JL, Du, AY, Duffy, S, Abd El-Salam El-Sayed, S, Ferdig, MT, Fernández Robledo, JA, Fidock, DA, Florent, I, Fokou, PVT, Galstian, A, Gamo, FJ, Gokool, S, Gold, B, Golub, T, Goldgof, GM, Guha, R, Guiguemde, WA, Gural, N, Guy, RK, Hansen, MAE, Hanson, KK, Hemphill, A, Hooft van Huijsduijnen, R, Horii, T, Horrocks, P, Hughes, TB, Huston, C, Igarashi, I, Ingram-Sieber, K, Itoe, MA, Jadhav, A, Naranuntarat Jensen, A, Jensen, LT, Jiang, RHY, Kaiser, A, Keiser, J, Ketas, T, Kicka, S, Kim, S, Kirk, K, Kumar, VP, Kyle, DE, Lafuente, MJ, Landfear, S, Lee, N, Lee, S, Lehane, AM, Li, F, Little, D, Liu, L, Llinás, M, Loza, MI, Lubar, A, Lucantoni, L, Lucet, I, Maes, L, Mancama, D, Mansour, NR, March, S, McGowan, S, Medina Vera, I, Meister, S, Mercer, L, Mestres, J, Mfopa, AN, Misra, RN, Moon, S, Moore, JP, Morais Rodrigues da Costa, F, Müller, J, Muriana, A, Nakazawa Hewitt, S, Nare, B, Nathan, C, Narraidoo, N, Nawaratna, S, Ojo, KK, Ortiz, D, Panic, G, Papadatos, G, Parapini, S, Patra, K, Pham, N, Prats, S, Plouffe, DM, Poulsen, S, Pradhan, A, Quevedo, C, Quinn, RJ, Rice, CA, Abdo Rizk, M, Ruecker, A, St. Onge, R, Salgado Ferreira, R, Samra, J, Robinett, NG, Schlecht, U, Schmitt, M, Silva Villela, F, Silvestrini, F, Sinden, R, Smith, DA, Soldati, T, Spitzmüller, A, Stamm, SM, Sullivan, DJ, Sullivan, W, Suresh, S, Suzuki, BM, Suzuki, Y, Swamidass, SJ, Taramelli, D, Tchokouaha, LRY, Theron, A, Thomas, D, Tonissen, KF, Townson, S, Tripathi, AK, Trofimov, V, Udenze, KO, Ullah, I, Vallieres, C, Vigil, E, Vinetz, JM, Voong Vinh, P, Vu, H, Watanabe, N, Weatherby, K, White, PM, Wilks, AF, Winzeler, EA, Wojcik, E, Wree, M, Wu, W, Yokoyama, N, Zollo, PHA, Abla, N, Blasco, B, Burrows, J, Laleu, B, Leroy, D, Spangenberg, T, Wells, T and Willis, PA (2016). Open Source Drug Discovery with the Malaria Box Compound Collection for Neglected Diseases and Beyond. [Data Collection]. PLOS Pathogens. https://doi.org/10.1371/journal.ppat.1005763.s002
Van hoek, AJ, Andrews, N, Campbell, H, Amirthalingam, G, Edmunds, WJ and Miller, E (2018). Social contact data for UK. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.1409506
Wamae, K, Ndwiga, L, Kharabora, O, Kimenyi, KM, Osoti, V, de Laurent, ZR, Wambua, J, Musyoki, J, Ngetsa, C, Kalume, P, Mwambingu, G, Hamaluba, M, van der Pluijm, RW, Dondorp, AM, Bailey, JA, Juliano, JJ, Bejon, P and Ochola-Oyier, LI (2022). Targeted Amplicon deep sequencing of ama1 and mdr1 to track within-host P. falciparum diversity in Kilifi, KENYA. [Data Collection]. Zenodo. https://doi.org/10.5281/zenodo.6243928
Wick, RR, Judd, LM and Holt, KE (2019). Additional file 2 of: Performance of neural network basecalling tools for Oxford Nanopore sequencing. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.8319506.v1
Williamson, AE, Ylioja, PM, Robertson, MN, Antonova-Koch, Y, Avery, V, Baell, JB, Batchu, H, Batra, S, Burrows, JN, Bhattacharyya, S, Calderon, F, Charman, SA, Clark, J, Crespo, B, Dean, M, Debbert, SL, Delves, M, Dennis, ASM, Deroose, F, Duffy, S, Fletcher, S, Giaever, G, Hallyburton, I, Gamo, F, Gebbia, M, Guy, RK, Hungerford, Z, Kirk, K, Lafuente-Monasterio, MJ, Lee, A, Meister, S, Nislow, C, Overington, JP, Papadatos, G, Patiny, L, Pham, J, Ralph, SA, Ruecker, A, Ryan, E, Southan, C, Srivastava, K, Swain, C, Tarnowski, MJ, Thomson, P, Turner, P, Wallace, IM, Wells, TNC, White, K, White, L, Willis, P, Winzeler, EA, Wittlin, S and Todd, MH (2016). Open Source Drug Discovery: Highly Potent Antimalarial Compounds Derived from the Tres Cantos Arylpyrroles. [Data Collection]. ACS Publications. https://doi.org/10.1021/acscentsci.6b00086
Witmer, K, Sherrard-Smith, E, Straschil, U, Tunnicliff, M, Baum, J and Delves, M (2018). MOESM1 of An inexpensive open source 3D-printed membrane feeder for human malaria transmission studies. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.6933695.v1
Witmer, K, Sherrard-Smith, E, Straschil, U, Tunnicliff, M, Baum, J and Delves, M (2018). MOESM2 of An inexpensive open source 3D-printed membrane feeder for human malaria transmission studies. [Data Collection]. Figshare. https://doi.org/10.6084/m9.figshare.6933704.v1
Wu, L, van den Hoogen, LL, Slater, H, Walker, PGT, Ghani, AC, Drakeley, CJ and Okell, LC (2015). Comparison of diagnostics for the detection of asymptomatic Plasmodium falciparum infections to inform control and elimination strategies. [Data Collection]. Nature. https://doi.org/10.1136/jech-2018-211746
Wyres, KL, Nguyen, TNT, Lam, MMC, Judd, LM, van Vinh Chau, N, Dance, DAB, Ip, M, Karkey, A, Ling, CL, Miliya, T, Newton, PN, Lan, NPH, Sengduangphachanh, A, Turner, P, Veeraraghavan, B, Vinh, PV, Vongsouvath, M, Thomson, NR, Baker, S and Holt, KE (2020). Data for, "Genomic surveillance for hypervirulence and multi-drug resistance in invasive Klebsiella pneumoniae from south and southeast Asia.". [Data Collection]. Monash University. https://doi.org/10.26180/5c67982956721
Zelmer, A, Martin, M, Gundogdu, O, Birchenough, G, Lever, R, Wren, B, Luzio, JP and Taylor, PW (2014). Transcription profiling of brain, liver and spleen from rats infected with Escherichia coli K1 and treated with capsule-selective endosialidase E. [Data Collection]. ArrayExpress. http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-2406/
van Meijgaarden, KE, Khatri, B, Smith, SG, Drittij, Anne M. F. H., de Paus, RA, Goeman, JJ, Ho, MM, Dockrell, HM, McShane, H, Joosten, SA and Ottenhoff, THM (2018). Raw data for "Cross-laboratory evaluation of multiplex bead assays including independent common reference standards for immunological monitoring of observational and interventional human studies". [Data Collection]. PLOS One. https://doi.org/10.1371/journal.pone.0201205.s004