Faculty
  • LSHTM Organisational Structure (3657)
  • Faculty of Epidemiology and Population Health (2389)
  • Dept of Infectious Disease Epidemiology & Dynamics (2023-) (78)
    Number of items at this level: 78.
    A
  • vaccine-impact/hpv_vaccine_equity. (2024) Abbas, Kaja M., Vaccine Impact
  • lshtm-vimc/prime. (2024) Abbas, Kaja M., Vaccine Impact, Hadley, Liza
  • seabbs/badtobetter: Initial release. (2023) Abbott, Sam
  • EpiNow2: Estimate Real-Time Case Counts and Time-Varying Epidemiological Parameters. (2024) Abbott, Sam, Hellewell, Joel, Sherratt, Katharine, Gostic, Katelyn, Hickson, Joe, Badr, Hamada S., DeWitt, Michael, Azam, James M., EpiForecasts, Funk, Sebastian
  • epinowcast/epidist. (2025) Abbott, Sam, Howes, Adam, Park, Sang Woo, Funk, Sebastian, Bayer, Damon, DeWitt, Michael
  • thimotei/legacy_ct_modelling: Final version. (2023) Abbott, Sam, Russell, Timothy W., Hellewell, Joel, Kucharski, Adam J.
  • Dynamics of SARS-CoV-2 infection over two epidemic waves in Manaus, Brazil: a serological study of seven thousand blood donors. (2024) Alexander, Neal, Dye, Christopher, Busch, Michael P., Buss, Lewis, Prete Jr, Carlos A., Brady, Oliver J., Mee, Paul, Abrahim, Claudia M. M., Crispim, Myuki A. E., da Costa, Allyson G., Salomon, Tassila, Mayaud, Philippe, Oikawa, Márcio K., Faria, Nuno, Sabino, Ester C.
  • Association between HTLV-1/2 infection and COVID-19 severity in a migrant Shipibo-Konibo population in Lima, Peru: Database and dictionary. (2024) Avila Dextre, Fátima, Morales Álvarez, Bryan, Aguirre Castañeda, Paulo, Alva, Isaac Efrain, López, Giovanni, Schwalb, Alvaro, Gotuzzo, Eduardo
  • B
  • Data and code from: Estimating the burden of dengue and the impact of release of wMel Wolbachia infected mosquitoes in Indonesia: a modelling study. (2019) Brady, Oliver J.
  • obrady/CATI_Vietnam. (2024) Brady, Oliver J.
  • C
  • anastasiachtz/COMMAND_stan/. (2019) Chatzilena, Anastasia, Van Leeuwen, Edwin
  • lshtm-tbmg/tbmod-pub-undernutrition. (2024) Clark, Rebecca
  • D
  • epiverse-trace/serofoi. (2024) Domínguez, Nicolás Torres, Gruson, Hugo, Pavlich-Mariscal, Jaime, Gomez, Geraldine, Gámez López, Miguel Enrique, Cucunubá, Zulma M., tracelac, Hartgerink, Chris, Azam, James, ben18785
  • E
  • Wastewater surveillance overcomes socio-economic limitations of laboratory-based surveillance when monitoring disease transmission: the South African experience during the COVID-19 pandemic. (2025) Els, Fiona, Maree, Gillian, Naidoo, Yashena, Naidoo, Laven, Mahamuza, Phemelo, Macheke, Mokgaetji, Ndlovu, Nkosenhle, Iwu-Jaja, Chinwe, Taukobong, Setshaba, Maposa, Sibonginkosi, O'reilly, Kathleen M., Yousif, Mukhlid, McCarthy, Kerrigan, Rachida, Said
  • DAISIE: Dynamical Assembly of Islands by Speciation, Immigration and Extinction. (2023) Etienne, Rampal S., Valente, Luis, Phillimore, Albert B., Haegeman, Bart, Lambert, Joshua W., Santos Neves, Pedro, Xie, Shu, Bilderbeek, Richèl J.C., Hildenbrandt, Hanno, Hauffe, Torsten, Laudanno, Giovanni, Kristensen, Nadiah, Scherrer, Raphael
  • F
  • Additional file 2: of Real-time analysis of the diphtheria outbreak in forcibly displaced Myanmar nationals in Bangladesh. (2019) Finger, Flavio, Funk, Sebastian, White, Kate, Siddiqui, M. Ruby, Edmunds, W. John, Kucharski, Adam J.
  • Data and R code to accompany 'Compound and cascading effects of climatic extremes on dengue outbreak risk in the Caribbean: an impact-based modelling framework with long-lag and short-lag interactions'. (2025) Fletcher, Chloe, Moirano, Giovenale, Alcayna, Tilly, Rollock, Leslie, Van Meerbeeck, Cédric J, Mahon, Roche, Trotman, Adrian, Boodram, Laura-Lee, Browne, Tia, Best, Sabu, Lührsen, Daniela, Díaz, Avriel R, Dunbar, Willy, Lippi, Catherine A, Ryan, Sadie J, Colón-González, Felipe J, Stewart-Ibarra, Anna M, Lowe, Rachel
  • TheYongjinChoi/NYS-COVID19-Disparities-Survey. (2021) Fox, Ashley, Choi, Yongjin
  • G
  • lucy-gf/imd-covid. (2024) Goodfellow, Lucy
  • cfr: Estimate Disease Severity and Case Ascertainment. (2024) Gupte, Pratik R., Kucharski, Adam J., Russell, Timothy W., Lambert, Joshua W., Gruson, Hugo, Taylor, Tim, Azam, James M., Degoot, Abdoelnaser M., Funk, Sebastian
  • finalsize: Calculate the Final Size of an Epidemic. (2024) Gupte, Pratik, Van Leeuwen, Edwin, Kucharski, Adam, Eggo, Rosalind M., Gruson, Hugo, Jombart, Thibaut, Valle Campos, Andree, Lambert, Joshua W.
  • H
  • S1 Data for: "Impacts of climate change on diarrhoeal disease hospitalisations: How does the global warming targets of 1.5–2°C affect Dhaka, Bangladesh?". (2024) Haque, Farhana, Lampe, Fiona C., Hajat, Shakoor, Stavrianaki, Katerina, Hasan, S. M. Tafsir, Faruque, A. S. G., Ahmed, Tahmeed, Jubayer, Shamim, Kelman, Ilan
  • numberize: Convert Words to Numbers in Multiple Languages. (2024) Hartgerink, Chris, Lambert, Joshua W., Mané, Karim, Gruson, Hugo, Ahadzie, Bankole
  • opensafely/openprompt-vaccine-long-covid. (2023) Henderson, Alasdair D, Butler-Cole, Ben FC, Wiedemann, Milan, Evans, David, Smith, Rebecca
  • dchodge/nambcea. (2022) Hodgson, David
  • seroanalytics/serojump. (2025) Hodgson, David
  • Assessing the impact of the 2018 Changchun Changsheng vaccine incident on childhood vaccination in China. (2023) Hou, Zhiyuan, Lai, Xiaozhen, Liu, Yang, Jit, Mark, Larson, Heidi, Hai, Fang
  • Social Mobilization Action Consortium: Community Engagement data from the 2014-2016 Sierra Leone Ebola outbreak. (2019) Hébert-Dufresne, Laurent, Althouse, Benjamin M., Skrip, Laura, Bedson, Jamie
  • I
  • Measles Seroprevalence Systematic Review and Bias Assessment 1962-2019. (2024) Institute for Health Metrics and Evaluation (IHME), London School of Hygiene and Tropical Medicine
  • J
  • ZeinaJamaluddine/gaza_mortality_capture_recapture. (2024) Jamaluddine, Zeina, Checchi, Francesco
  • CoMix data (last round in BE, CH, NL and UK). (2024) Jarvis, Christopher I., Coletti, Pietro, Backer, Jantien, Munday, James D., Faes, Christel, Beutels, Philippe, Althaus, Christian, Low, Nicola, Wallinga, Jacco, Hens, Niel, Edmunds, John
  • Model for "Estimating the health and macroeconomic burdens of tuberculosis in India, 2021-2040". (2024) Jensen, Henning Tarp folder_zip
  • kaitejohnson/School_reopening. (2020) Johnson, Kaitlyn E.
  • wastewater-informed-covid-forecasting. (2024) Johnson, Kaitlyn E.
  • ciarajudge/EpiFusion. (2024) Judge, Ciara
  • ciarajudge/EpiFusion_PublicationRepo. (2024) Judge, Ciara
  • K
  • Replication Data for: Age-dependent acquisition of IgG antibodies to Shigella serotypes – a retrospective analysis of sero-prevalence in Kenyan children. (2023) Kapulu, Melissa C, Muthumbi, Esther, Otieno, Edward, Rossi, Omar, Ferruzzi, Pietro, Necchi, Francesca, Acquaviva, Alessandra, Martin, Laura B, Orindi, Benedict, Mwai, Kennedy, Mwanzu, Alfred, Bigogo, Godfrey M, Verani, Jennifer R, Mbae, Cecilia, Nyundo, Christopher, Agoti, Charles N, Nakakana, Usman Nasir, Conti, Valentino, Bejon, Philip, Kariuki, Samuel, Scott, J Anthony G, Micoli, Francesca, Podda, Audino
  • kingaa/pomp. (2025) King, Aaron A, O'Dea, Eamon, Asfaw, Kidus, Wheeler, Jesse, Breto, Carles, Ionides, Edward, Akinshin, Andrey, Voipio, Timo, Funk, Sebastian
  • fkrauer/RSV-VACC-DE. (2024) Krauer, Fabienne
  • L
  • joshwlambert/DAISIEprepExtra. (2024) Lambert, Joshua W.
  • DAISIEmainland. (2024) Lambert, Joshua W., Bilderbeek, Richèl, Santos Neves, Pedro
  • AR.IA App all datasets. (2019) Leclerc, Quentin J., Naylor, Nichola R., Aiken, Alexander M., Coll, Francesc, Knight, Gwenan M.
  • AR.IA App drug breakdown. (2019) Leclerc, Quentin J., Naylor, Nichola R., Aiken, Alexander M., Coll, Francesc, Knight, Gwenan M.
  • AR.IA App economic data. (2019) Leclerc, Quentin J., Naylor, Nichola R., Aiken, Alexander M., Coll, Francesc, Knight, Gwenan M.
  • ahyoung-lim/Arbo_riskmaps_public. (2025) Lim, Ahyoung
  • OpenDengue/master-repo. (2024) Lim, Ahyoung, Brady, Oliver J
  • Data and code from "The overlapping global distribution of dengue, chikungunya, Zika and yellow fever". (2025) Lim, Ahyoung, Brady, Oliver J.
  • Phylogenetic inference of pneumococcal transmission from cross-sectional data, a pilot study. (2023) London School of Hygiene & Tropical Medicine
  • Data and R-code to accompany 'Modelling the impact of climate and the environment on the spatiotemporal dynamics of Lyme borreliosis in Germany'. (2025) Lotto Batista, Martín, Carvalho, Bruno, Gibb, Rory, Solaraju-Murali, Balakrishnan, Flasche, Stefan, Castell, Stefanie, Ghozzi, Stéphane, Lowe, Rachel
  • M
  • cleanepi: Clean and Standardize Epidemiological Data. (2024) Mané, Karim, Jombart, Thibaut, Bah, Bubacarr, Ahadzie, Bankolé, Mohammed, Nuredin, Degoot, Abdoelnaser M., Gruson, Hugo, Gupte, Pratik R., Azam, James M., Lambert, Joshua W., Hartgerink, Chris
  • Household fuel use and adverse pregnancy outcomes. (2024) Mezmur, Haymanot, Tefera, Maleda, Jemal, Mohamed, Kahsay, Bersabeh, Assefa, Nega
  • ghr/wnv_casecrossover. (2024) Moirano, Giovenale, Fletcher, Chloe, Semenza, Jan C., Lowe, Rachel
  • N
  • rsetienne/DAISIE. (2023) Neves, Pedro Santos, Lambert, Joshua W., Etienne, Rampal S., Bilderbeek, Richel, Xie, Shu, Valente, Luis, Hildenbrandt, H, Scherrer, Raphaël, Yangshen0325
  • esnightingale/vl-collection-methods-xm. (2023) Nightingale, Emily
  • esnightingale/vl-disaggregation. (2024) Nightingale, Emily
  • enilles1/immunoepidemiology. (2024) Nilles, Eric J., Kucharski, Adam J.
  • O
  • Interview Questions for WW Dashboards. (2024) O'reilly, Kathleen M.
  • P
  • tjhladish/AbcSmc. (2023) Pearson, Carl A. B., Hladish, Thomas
  • tjhladish/dengue-abm. (2023) Pearson, Carl A. B., Hladish, Thomas, Pillai, Alexander N., Chao, Dennis
  • cmmid/comix_mobility. (2025) Prestige, Em
  • rachaelpung/temporal_networks. (2024) Pung, Rachael, Kucharski, Adam J., Firth, Josh, Russell, Timothy W., Rogers, Tim, Lee, Vernon
  • R
  • alexandrasrichards/natural_history_tb_disease. (2023) Richards, Alexandra S
  • alxsrobert/measles_england_sir. (2024) Robert, Alexis, Suffel, Anne Marie
  • S1 Table for "Assessing vulnerability for future Zika virus outbreaks using seroprevalence data and environmental suitability maps". (2024) Roell, Yannik, Pezzi, Laura, Lozano-Parra, Anyela, Olson, Daniel, Messina, Jane, Quandelacy, Talia, Drexler, Jan Felix, Brady, Oliver, Karimzadeh, Morteza, Jaenisch, Thomas
  • Fits and plot data for the paper: "Combined analyses of within-host SARS-CoV-2 viral kinetics and information on past exposures to the virus in a human cohort identifies intrinsic differences of Omicron and Delta variants". (2023) Russell, Timothy W.
  • thimotei/legacy_nAb_kinetics. (2024) Russell, Timothy W., Kucharski, Adam J.
  • S
  • Data from: Global yellow fever vaccination coverage from 1970 to 2016: an adjusted retrospective analysis. (2018) Shearer, Freya M, Moyes, Catherine L, Pigott, David M, Brady, Oliver J., Marinho, Fatima, Deshpande, Aniruddha, Longbottom, Joshua, Browne, Annie J, Kraemer, Moritz U G, O'reilly, Kathleen M., Hombach, Joachim, Yactayo, Sergio, de Araújo, Valdelaine E M, da Nóbrega, Aglaêr A, Mosser, Jonathan F, Stanaway, Jeffrey D, Lim, Stephen S, Hay, Simon I, Golding, Nick, Reiner, Robert C
  • Improving modelling for epidemic responses: reflections. (2023) Sherratt, Katharine, Abbott, Sam, Carnegie, Anna, Liu, Yang
  • epiforecasts/eval-by-method. (2025) Sherratt, Katharine, Funk, Sebastian
  • epiforecasts/multi-model-information: Publication release. (2024) Sherratt, Katharine, Funk, Sebastian
  • Dataset for "Genomic characterisation of Salmonella enterica serovar Wangata isolates obtained from different sources reveals low genomic diversity". (2020) Simpson, Kelly M J, Mor, Siobhan M, Ward, Michael P, Collins, Julie, Flint, James, Hill-Cawthorne, Grant A, El Ghany, Moataz Abd
  • Data collection tools and dataset from tracer study of Q4D Lab, a locally developed and owned coding and biostatistics program in Liberia. (2024) Skrip, Laura, Barcon, Snoyonoh, Davis, George, Yeabah, Trokon O., Kromah, Mulbah
  • Structural and social factors affecting COVID-19 vaccine uptake among healthcare workers and older people in Uganda: A qualitative analysis. Data file. (2024) Sliversteri, Sande, Ssali, Agnes, Bahemuka, Ubaldo M., Nsubuga, Denis, Muwanga, Moses, Nsereko, Chris, Ssemwanga, Edward, Robert, Asaba, Seeley, Janet, Elliott, Alison, Ruzagira, Eugene
  • tomsumner/Timing_of_vaccination. (2025) Sumner, Tom
  • T
  • katietiley/Wolbachia_TPP_PPC. (2024) Tiley, Katherine
  • V
  • Pre-vaccination carriage prevalence of Streptococcus pneumoniae serotypes among internally displaced people in Somaliland. Data and analyses. (2024) Van zandvoort, Kevin, Hassan, Abdirahman Ibrahim, Bobe, Mohamed Omer, Pell, Casey L, Ahmed, Mohamed Saed, Ortika, Belinda D, Ibrahim, Saed, Abdi, Mohamed Ismail, Karim, Mustapha A, Eggo, Rosalind M., Yusuf, Sulieman, Hinds, Jason, Soleman, Saeed Mohamood, Cummings, Rachael, Mcgowan, Catherine R, Mulholland, E Kim, Satzke, Catherine, Hergeeye, Mohamed Abdi, Checchi, Francesco, Flasche, Stefan
  • W
  • gwenknight/ecdc_data_age_sex. (2024) Waterlow, Naomi, Knight, Gwen
  • X
  • xiangfstats/GenieR: A final release. (2019) Xiang, Fei, Frost, Simon