LSHTM Organisational Structure (3657)
Faculty of Epidemiology and Population Health (2389)
Dept of Infectious Disease Epidemiology & Dynamics (2023-) (78)
Number of items at this level: 78.
A
vaccine-impact/hpv_vaccine_equity. (2024)
Abbas, Kaja M., Vaccine Impact
lshtm-vimc/prime. (2024)
Abbas, Kaja M., Vaccine Impact, Hadley, Liza
seabbs/badtobetter: Initial release. (2023)
Abbott, Sam
EpiNow2: Estimate Real-Time Case Counts and Time-Varying Epidemiological Parameters. (2024)
Abbott, Sam, Hellewell, Joel, Sherratt, Katharine, Gostic, Katelyn, Hickson, Joe, Badr, Hamada S., DeWitt, Michael, Azam, James M., EpiForecasts, Funk, Sebastian
epinowcast/epidist. (2025)
Abbott, Sam, Howes, Adam, Park, Sang Woo, Funk, Sebastian, Bayer, Damon, DeWitt, Michael
thimotei/legacy_ct_modelling: Final version. (2023)
Abbott, Sam, Russell, Timothy W., Hellewell, Joel, Kucharski, Adam J.
Dynamics of SARS-CoV-2 infection over two epidemic waves in Manaus, Brazil: a serological study of seven thousand blood donors. (2024)
Alexander, Neal, Dye, Christopher, Busch, Michael P., Buss, Lewis, Prete Jr, Carlos A., Brady, Oliver J., Mee, Paul, Abrahim, Claudia M. M., Crispim, Myuki A. E., da Costa, Allyson G., Salomon, Tassila, Mayaud, Philippe, Oikawa, Márcio K., Faria, Nuno, Sabino, Ester C.
Association between HTLV-1/2 infection and COVID-19 severity in a migrant Shipibo-Konibo population in Lima, Peru: Database and dictionary. (2024)
Avila Dextre, Fátima, Morales Álvarez, Bryan, Aguirre Castañeda, Paulo, Alva, Isaac Efrain, López, Giovanni, Schwalb, Alvaro, Gotuzzo, Eduardo
D
epiverse-trace/serofoi. (2024)
Domínguez, Nicolás Torres, Gruson, Hugo, Pavlich-Mariscal, Jaime, Gomez, Geraldine, Gámez López, Miguel Enrique, Cucunubá, Zulma M., tracelac, Hartgerink, Chris, Azam, James, ben18785
E
Wastewater surveillance overcomes socio-economic limitations of laboratory-based surveillance when monitoring disease transmission: the South African experience during the COVID-19 pandemic. (2025)
Els, Fiona, Maree, Gillian, Naidoo, Yashena, Naidoo, Laven, Mahamuza, Phemelo, Macheke, Mokgaetji, Ndlovu, Nkosenhle, Iwu-Jaja, Chinwe, Taukobong, Setshaba, Maposa, Sibonginkosi, O'reilly, Kathleen M., Yousif, Mukhlid, McCarthy, Kerrigan, Rachida, Said
DAISIE: Dynamical Assembly of Islands by Speciation, Immigration and Extinction. (2023)
Etienne, Rampal S., Valente, Luis, Phillimore, Albert B., Haegeman, Bart, Lambert, Joshua W., Santos Neves, Pedro, Xie, Shu, Bilderbeek, Richèl J.C., Hildenbrandt, Hanno, Hauffe, Torsten, Laudanno, Giovanni, Kristensen, Nadiah, Scherrer, Raphael
F
Additional file 2: of Real-time analysis of the diphtheria outbreak in forcibly displaced Myanmar nationals in Bangladesh. (2019)
Finger, Flavio, Funk, Sebastian, White, Kate, Siddiqui, M. Ruby, Edmunds, W. John, Kucharski, Adam J.
Data and R code to accompany 'Compound and cascading effects of climatic extremes on dengue outbreak risk in the Caribbean: an impact-based modelling framework with long-lag and short-lag interactions'. (2025)
Fletcher, Chloe, Moirano, Giovenale, Alcayna, Tilly, Rollock, Leslie, Van Meerbeeck, Cédric J, Mahon, Roche, Trotman, Adrian, Boodram, Laura-Lee, Browne, Tia, Best, Sabu, Lührsen, Daniela, Díaz, Avriel R, Dunbar, Willy, Lippi, Catherine A, Ryan, Sadie J, Colón-González, Felipe J, Stewart-Ibarra, Anna M, Lowe, Rachel
TheYongjinChoi/NYS-COVID19-Disparities-Survey. (2021)
Fox, Ashley, Choi, Yongjin
G
lucy-gf/imd-covid. (2024)
Goodfellow, Lucy
cfr: Estimate Disease Severity and Case Ascertainment. (2024)
Gupte, Pratik R., Kucharski, Adam J., Russell, Timothy W., Lambert, Joshua W., Gruson, Hugo, Taylor, Tim, Azam, James M., Degoot, Abdoelnaser M., Funk, Sebastian
finalsize: Calculate the Final Size of an Epidemic. (2024)
Gupte, Pratik, Van Leeuwen, Edwin, Kucharski, Adam, Eggo, Rosalind M., Gruson, Hugo, Jombart, Thibaut, Valle Campos, Andree, Lambert, Joshua W.
H
S1 Data for: "Impacts of climate change on diarrhoeal disease hospitalisations: How does the global warming targets of 1.5–2°C affect Dhaka, Bangladesh?". (2024)
Haque, Farhana, Lampe, Fiona C., Hajat, Shakoor, Stavrianaki, Katerina, Hasan, S. M. Tafsir, Faruque, A. S. G., Ahmed, Tahmeed, Jubayer, Shamim, Kelman, Ilan
numberize: Convert Words to Numbers in Multiple Languages. (2024)
Hartgerink, Chris, Lambert, Joshua W., Mané, Karim, Gruson, Hugo, Ahadzie, Bankole
opensafely/openprompt-vaccine-long-covid. (2023)
Henderson, Alasdair D, Butler-Cole, Ben FC, Wiedemann, Milan, Evans, David, Smith, Rebecca
dchodge/nambcea. (2022)
Hodgson, David
seroanalytics/serojump. (2025)
Hodgson, David
Assessing the impact of the 2018 Changchun Changsheng vaccine incident on childhood vaccination in China. (2023)
Hou, Zhiyuan, Lai, Xiaozhen, Liu, Yang, Jit, Mark, Larson, Heidi, Hai, Fang
Social Mobilization Action Consortium: Community Engagement data from the 2014-2016 Sierra Leone Ebola outbreak. (2019)
Hébert-Dufresne, Laurent, Althouse, Benjamin M., Skrip, Laura, Bedson, Jamie
J
ZeinaJamaluddine/gaza_mortality_capture_recapture. (2024)
Jamaluddine, Zeina, Checchi, Francesco
CoMix data (last round in BE, CH, NL and UK). (2024)
Jarvis, Christopher I., Coletti, Pietro, Backer, Jantien, Munday, James D., Faes, Christel, Beutels, Philippe, Althaus, Christian, Low, Nicola, Wallinga, Jacco, Hens, Niel, Edmunds, John
Model for "Estimating the health and macroeconomic burdens of tuberculosis in India, 2021-2040". (2024)
Jensen, Henning Tarp
folder_zip
kaitejohnson/School_reopening. (2020)
Johnson, Kaitlyn E.
wastewater-informed-covid-forecasting. (2024)
Johnson, Kaitlyn E.
ciarajudge/EpiFusion. (2024)
Judge, Ciara
ciarajudge/EpiFusion_PublicationRepo. (2024)
Judge, Ciara
K
Replication Data for: Age-dependent acquisition of IgG antibodies to Shigella serotypes – a retrospective analysis of sero-prevalence in Kenyan children. (2023)
Kapulu, Melissa C, Muthumbi, Esther, Otieno, Edward, Rossi, Omar, Ferruzzi, Pietro, Necchi, Francesca, Acquaviva, Alessandra, Martin, Laura B, Orindi, Benedict, Mwai, Kennedy, Mwanzu, Alfred, Bigogo, Godfrey M, Verani, Jennifer R, Mbae, Cecilia, Nyundo, Christopher, Agoti, Charles N, Nakakana, Usman Nasir, Conti, Valentino, Bejon, Philip, Kariuki, Samuel, Scott, J Anthony G, Micoli, Francesca, Podda, Audino
kingaa/pomp. (2025)
King, Aaron A, O'Dea, Eamon, Asfaw, Kidus, Wheeler, Jesse, Breto, Carles, Ionides, Edward, Akinshin, Andrey, Voipio, Timo, Funk, Sebastian
fkrauer/RSV-VACC-DE. (2024)
Krauer, Fabienne
L
joshwlambert/DAISIEprepExtra. (2024)
Lambert, Joshua W.
DAISIEmainland. (2024)
Lambert, Joshua W., Bilderbeek, Richèl, Santos Neves, Pedro
AR.IA App all datasets. (2019)
Leclerc, Quentin J., Naylor, Nichola R., Aiken, Alexander M., Coll, Francesc, Knight, Gwenan M.
AR.IA App drug breakdown. (2019)
Leclerc, Quentin J., Naylor, Nichola R., Aiken, Alexander M., Coll, Francesc, Knight, Gwenan M.
AR.IA App economic data. (2019)
Leclerc, Quentin J., Naylor, Nichola R., Aiken, Alexander M., Coll, Francesc, Knight, Gwenan M.
ahyoung-lim/Arbo_riskmaps_public. (2025)
Lim, Ahyoung
OpenDengue/master-repo. (2024)
Lim, Ahyoung, Brady, Oliver J
Data and code from "The overlapping global distribution of dengue, chikungunya, Zika and yellow fever". (2025)
Lim, Ahyoung, Brady, Oliver J.
Phylogenetic inference of pneumococcal transmission from cross-sectional data, a pilot study. (2023)
London School of Hygiene & Tropical Medicine
Data and R-code to accompany 'Modelling the impact of climate and the environment on the spatiotemporal dynamics of Lyme borreliosis in Germany'. (2025)
Lotto Batista, Martín, Carvalho, Bruno, Gibb, Rory, Solaraju-Murali, Balakrishnan, Flasche, Stefan, Castell, Stefanie, Ghozzi, Stéphane, Lowe, Rachel
M
cleanepi: Clean and Standardize Epidemiological Data. (2024)
Mané, Karim, Jombart, Thibaut, Bah, Bubacarr, Ahadzie, Bankolé, Mohammed, Nuredin, Degoot, Abdoelnaser M., Gruson, Hugo, Gupte, Pratik R., Azam, James M., Lambert, Joshua W., Hartgerink, Chris
Household fuel use and adverse pregnancy outcomes. (2024)
Mezmur, Haymanot, Tefera, Maleda, Jemal, Mohamed, Kahsay, Bersabeh, Assefa, Nega
ghr/wnv_casecrossover. (2024)
Moirano, Giovenale, Fletcher, Chloe, Semenza, Jan C., Lowe, Rachel
N
rsetienne/DAISIE. (2023)
Neves, Pedro Santos, Lambert, Joshua W., Etienne, Rampal S., Bilderbeek, Richel, Xie, Shu, Valente, Luis, Hildenbrandt, H, Scherrer, Raphaël, Yangshen0325
esnightingale/vl-collection-methods-xm. (2023)
Nightingale, Emily
esnightingale/vl-disaggregation. (2024)
Nightingale, Emily
enilles1/immunoepidemiology. (2024)
Nilles, Eric J., Kucharski, Adam J.
P
tjhladish/AbcSmc. (2023)
Pearson, Carl A. B., Hladish, Thomas
tjhladish/dengue-abm. (2023)
Pearson, Carl A. B., Hladish, Thomas, Pillai, Alexander N., Chao, Dennis
cmmid/comix_mobility. (2025)
Prestige, Em
rachaelpung/temporal_networks. (2024)
Pung, Rachael, Kucharski, Adam J., Firth, Josh, Russell, Timothy W., Rogers, Tim, Lee, Vernon
R
alexandrasrichards/natural_history_tb_disease. (2023)
Richards, Alexandra S
alxsrobert/measles_england_sir. (2024)
Robert, Alexis, Suffel, Anne Marie
S1 Table for "Assessing vulnerability for future Zika virus outbreaks using seroprevalence data and environmental suitability maps". (2024)
Roell, Yannik, Pezzi, Laura, Lozano-Parra, Anyela, Olson, Daniel, Messina, Jane, Quandelacy, Talia, Drexler, Jan Felix, Brady, Oliver, Karimzadeh, Morteza, Jaenisch, Thomas
Fits and plot data for the paper: "Combined analyses of within-host SARS-CoV-2 viral kinetics and information on past exposures to the virus in a human cohort identifies intrinsic differences of Omicron and Delta variants". (2023)
Russell, Timothy W.
thimotei/legacy_nAb_kinetics. (2024)
Russell, Timothy W., Kucharski, Adam J.
S
Data from: Global yellow fever vaccination coverage from 1970 to 2016: an adjusted retrospective analysis. (2018)
Shearer, Freya M, Moyes, Catherine L, Pigott, David M, Brady, Oliver J., Marinho, Fatima, Deshpande, Aniruddha, Longbottom, Joshua, Browne, Annie J, Kraemer, Moritz U G, O'reilly, Kathleen M., Hombach, Joachim, Yactayo, Sergio, de Araújo, Valdelaine E M, da Nóbrega, Aglaêr A, Mosser, Jonathan F, Stanaway, Jeffrey D, Lim, Stephen S, Hay, Simon I, Golding, Nick, Reiner, Robert C
Improving modelling for epidemic responses: reflections. (2023)
Sherratt, Katharine, Abbott, Sam, Carnegie, Anna, Liu, Yang
epiforecasts/eval-by-method. (2025)
Sherratt, Katharine, Funk, Sebastian
epiforecasts/multi-model-information: Publication release. (2024)
Sherratt, Katharine, Funk, Sebastian
Dataset for "Genomic characterisation of Salmonella enterica serovar Wangata isolates obtained from different sources reveals low genomic diversity". (2020)
Simpson, Kelly M J, Mor, Siobhan M, Ward, Michael P, Collins, Julie, Flint, James, Hill-Cawthorne, Grant A, El Ghany, Moataz Abd
Data collection tools and dataset from tracer study of Q4D Lab, a locally developed and owned coding and biostatistics program in Liberia. (2024)
Skrip, Laura, Barcon, Snoyonoh, Davis, George, Yeabah, Trokon O., Kromah, Mulbah
Structural and social factors affecting COVID-19 vaccine uptake among healthcare workers and older people in Uganda: A qualitative analysis. Data file. (2024)
Sliversteri, Sande, Ssali, Agnes, Bahemuka, Ubaldo M., Nsubuga, Denis, Muwanga, Moses, Nsereko, Chris, Ssemwanga, Edward, Robert, Asaba, Seeley, Janet, Elliott, Alison, Ruzagira, Eugene
tomsumner/Timing_of_vaccination. (2025)
Sumner, Tom
V
Pre-vaccination carriage prevalence of Streptococcus pneumoniae serotypes among internally displaced people in Somaliland. Data and analyses. (2024)
Van zandvoort, Kevin, Hassan, Abdirahman Ibrahim, Bobe, Mohamed Omer, Pell, Casey L, Ahmed, Mohamed Saed, Ortika, Belinda D, Ibrahim, Saed, Abdi, Mohamed Ismail, Karim, Mustapha A, Eggo, Rosalind M., Yusuf, Sulieman, Hinds, Jason, Soleman, Saeed Mohamood, Cummings, Rachael, Mcgowan, Catherine R, Mulholland, E Kim, Satzke, Catherine, Hergeeye, Mohamed Abdi, Checchi, Francesco, Flasche, Stefan