LSHTM Organisational Structure (4028)
Faculty of Epidemiology and Population Health (2538)
Dept of Infectious Disease Epidemiology & Dynamics (2023-) (142)
Number of items at this level: 142.
Dataset
vaccine-impact/hpv_vaccine_equity. (2024)
Abbas, Kaja M.; Vaccine Impact
lshtm-vimc/prime. (2024)
Abbas, Kaja M.; Vaccine Impact; Hadley, Liza
seabbs/badtobetter: Initial release. (2023)
Abbott, Sam
Code and data for: The case for composable probabilistic infectious disease models. (2025)
Abbott, Sam; Brand, , Samuel P. C.; Ge, Hong; Johnson, Kaitlyn E.; Frost, Simon D. W.; Cori, Anne; Funk, Sebastian
Code and data for: Composable probabilistic models can lower barriers to rigorous infectious disease modelling. (2026)
Abbott, Sam; Brand, Samuel P. C; Ge, Hong; Johnson, Kaitlyn E.; Frost, Simon D. W; Cori, Anne; Funk, Sebastian
EpiAware/CensoredDistributions.jl. (2026)
Abbott, Sam; DeWitt, Michael; Brand, Samuel; Funk, Sebastian; Bayer, Damon; Lemaitre, Joseph; Vyshnavi0702
EpiNow2: Estimate Real-Time Case Counts and Time-Varying Epidemiological Parameters. (2024)
Abbott, Sam; Hellewell, Joel; Sherratt, Katharine; Gostic, Katelyn; Hickson, Joe; Badr, Hamada S.; DeWitt, Michael; Azam, James M.; EpiForecasts; Funk, Sebastian
epinowcast/epidist. (2025)
Abbott, Sam; Howes, Adam; Park, Sang Woo; Funk, Sebastian; Bayer, Damon; DeWitt, Michael
thimotei/legacy_ct_modelling: Final version. (2023)
Abbott, Sam; Russell, Timothy W.; Hellewell, Joel; Kucharski, Adam J.
Dynamics of SARS-CoV-2 infection over two epidemic waves in Manaus, Brazil: a serological study of seven thousand blood donors. (2024)
Alexander, Neal; Dye, Christopher; Busch, Michael P.; Buss, Lewis; Prete Jr, Carlos A.; Brady, Oliver J.; Mee, Paul; Abrahim, Claudia M. M.; Crispim, Myuki A. E.; da Costa, Allyson G.; Salomon, Tassila; Mayaud, Philippe; Oikawa, Márcio K.; Faria, Nuno; Sabino, Ester C.
Excel files with projections for each country of the burden of cases, hospitalizations, in-hospital and community deaths for each age group and by 1-month age groups, as well as peak, median, and mean age of each outcome. (2023)
Antillón, Marina; Li, Xiao; Willem, Lander; Bilcke, Joke; Jit, Mark; Beutels, Philippe
toshiakiasakura/polio_environmental_surveillance. (2025)
Asakura, Toshiaki R.
Association between HTLV-1/2 infection and COVID-19 severity in a migrant Shipibo-Konibo population in Lima, Peru: Database and dictionary. (2024)
Avila Dextre, Fátima; Morales Álvarez, Bryan; Aguirre Castañeda, Paulo; Alva, Isaac Efrain; López, Giovanni; Schwalb, Alvaro; Gotuzzo, Eduardo
epichains: Simulating and Analysing Transmission Chain Statistics Using Branching Process Models. (2024)
Azam, James M.; Funk, Sebastian; Finger, Flavio; Kamvar, Zhian N.; Gruson, Hugo; Mané, Karim; Gupte, Pratik; Lambert, Joshua W.
mrc-ide/epireview. (2026)
Bhatia, Sangeeta; Morgenstern, Christian; Nash, Rebecca; myles, Tristan; McCabe, Ruth; McCain, Kelly; Santoni, Cosmo; Rawson, Thomas; Lambert, Joshua W.; Doohan, Patrick; Pesántez, Shazia Ruybal; Cori, Anne; Cuomo-Dannenburg, Gina; Hicks, JT; Unwin, Juliette; Liétar, Paul; Sheppard, R. J.
Data and code from: Estimating the burden of dengue and the impact of release of wMel Wolbachia infected mosquitoes in Indonesia: a modelling study. (2019)
Brady, Oliver J.
obrady/CATI_Vietnam. (2024)
Brady, Oliver J.
Data and covariates from "Human movement and environmental barriers shape the emergence of dengue". (2024)
Brady, Oliver J.; Harish, Vinyas
Transcripts of the COVID-19-related material from the focus group discussions and in-depth interviews. (2025)
Carwile, Madeline E.; Jain, Komal; Dauphinais, Madolyn R.; Narasimhan, Prakash Babu; Maloomian, Kimberly; Rajaram, Manju; Cintron, Chelsie; Mcquaid, C. Finn; Locks, Lindsey M.; Sabin, Lora L.; Lakshminarayanan, Subitha; Sinha, Pranay
anastasiachtz/COMMAND_stan/. (2019)
Chatzilena, Anastasia; Van Leeuwen, Edwin
Dataset of the study "Effectiveness of Routine Measurement of Health-Related Quality of Life (HRQOL) in Improving Patient-reported Outcomes in Primary Care Patients with Chronic Knee and Back Problems – A Cluster Randomised Controlled Trial". (2026)
Cheng, Will H.G.; Liu, Kiki S. N.; Ng, Amy P. P.; Wong, Carlos King Ho; Or, Calvin K. L.; Fong, Daniel Y. T.; Cheung, Jason P. Y.; Chao, David V. K.; Ko, Welchie W. K.; Wong, Eliza L. Y.; Lam, Cindy L. K.
Long-term effect of COVID-19 social distancing measures on pertussis transmission in England; a mathematical modelling study. (2025)
Choi, Yoon Hong; Miller, Liz; Van Leeuwen, Edwin
lshtm-tbmg/tbmod-pub-aTBvaccines. (2025)
Clark, Rebecca
lshtm-tbmg/tbmod-pub-funding-impacts. (2025)
Clark, Rebecca
lshtm-tbmg/tbmod-pub-undernutrition. (2024)
Clark, Rebecca
Forecasting sub‐national trends in COVID‐19 vaccine uptake in the UK before vaccine rollout. (2022)
De Figueiredo, Alex
epiverse-trace/serofoi. (2024)
Domínguez, Nicolás Torres; Gruson, Hugo; Pavlich-Mariscal, Jaime; Gomez, Geraldine; Gámez López, Miguel Enrique; Cucunubá, Zulma M.; tracelac; Hartgerink, Chris; Azam, James; ben18785
Wastewater surveillance overcomes socio-economic limitations of laboratory-based surveillance when monitoring disease transmission: the South African experience during the COVID-19 pandemic. (2025)
Els, Fiona; Maree, Gillian; Naidoo, Yashena; Naidoo, Laven; Mahamuza, Phemelo; Macheke, Mokgaetji; Ndlovu, Nkosenhle; Iwu-Jaja, Chinwe; Taukobong, Setshaba; Maposa, Sibonginkosi; O'reilly, Kathleen M.; Yousif, Mukhlid; McCarthy, Kerrigan; Rachida, Said
DAISIE: Dynamical Assembly of Islands by Speciation, Immigration and Extinction. (2023)
Etienne, Rampal S.; Valente, Luis; Phillimore, Albert B.; Haegeman, Bart; Lambert, Joshua W.; Santos Neves, Pedro; Xie, Shu; Bilderbeek, Richèl J.C.; Hildenbrandt, Hanno; Hauffe, Torsten; Laudanno, Giovanni; Kristensen, Nadiah; Scherrer, Raphael
JAN-Filipe/scfr-influenza. (2025)
Filipe, Johnny A.N.
EmilieFinch/DR-covid19. (2026)
Finch, Emilie
Additional file 2: of Real-time analysis of the diphtheria outbreak in forcibly displaced Myanmar nationals in Bangladesh. (2019)
Finger, Flavio; Funk, Sebastian; White, Kate; Siddiqui, M. Ruby; Edmunds, W. John; Kucharski, Adam J.
Data and R code to accompany 'Compound and cascading effects of climatic extremes on dengue outbreak risk in the Caribbean: an impact-based modelling framework with long-lag and short-lag interactions'. (2025)
Fletcher, Chloe; Moirano, Giovenale; Alcayna, Tilly; Rollock, Leslie; Van Meerbeeck, Cédric J; Mahon, Roche; Trotman, Adrian; Boodram, Laura-Lee; Browne, Tia; Best, Sabu; Lührsen, Daniela; Díaz, Avriel R; Dunbar, Willy; Lippi, Catherine A; Ryan, Sadie J; Colón-González, Felipe J; Stewart-Ibarra, Anna M; Lowe, Rachel
TheYongjinChoi/NYS-COVID19-Disparities-Survey. (2021)
Fox, Ashley; Choi, Yongjin
lucy-gf/imd-covid. (2024)
Goodfellow, Lucy
Reconnect social contact data. (2025)
Goodfellow, Lucy; Quilty, Billy J.; Van Zandvoort, Kevin; Edmunds, W. John
cmmid/reconnect_uk_social_contact_survey. (2025)
Goodfellow, Lucy; Quilty, Billy J.; Van Zandvoort, Kevin; Edmunds, W. John
S1 Table - Systematic review of the economic impact of novel Mycobacterium tuberculosis specific antigen-based skin tests for detection of TB infection compared with tuberculin skin test and interferon-gamma release assays. (2024)
Goscé, Lara; Allel, Kasim; Hamada, Yohhei; Surkova, Elena; Kontsevaya, Irina; Wang, Ting Ting; Liu, Wan-Hsin; Matveev, Alexander; Ziganshina, Liliya Eugenevna; Korobitsyn, Alexei; Ismail, Nazir; Bashir, Saima; Denkinger, Claudia M.; Abubakar, Ibrahim; White, Peter J.; Rangaka, Molebogeng X.
cfr: Estimate Disease Severity and Case Ascertainment. (2024)
Gupte, Pratik R.; Kucharski, Adam J.; Russell, Timothy W.; Lambert, Joshua W.; Gruson, Hugo; Taylor, Tim; Azam, James M.; Degoot, Abdoelnaser M.; Funk, Sebastian
finalsize: Calculate the Final Size of an Epidemic. (2024)
Gupte, Pratik; Van Leeuwen, Edwin; Kucharski, Adam; Eggo, Rosalind M.; Gruson, Hugo; Jombart, Thibaut; Valle Campos, Andree; Lambert, Joshua W.
S1 Data for: "Impacts of climate change on diarrhoeal disease hospitalisations: How does the global warming targets of 1.5–2°C affect Dhaka, Bangladesh?". (2024)
Haque, Farhana; Lampe, Fiona C.; Hajat, Shakoor; Stavrianaki, Katerina; Hasan, S. M. Tafsir; Faruque, A. S. G.; Ahmed, Tahmeed; Jubayer, Shamim; Kelman, Ilan
numberize: Convert Words to Numbers in Multiple Languages. (2024)
Hartgerink, Chris; Lambert, Joshua W.; Mané, Karim; Gruson, Hugo; Ahadzie, Bankole
opensafely/openprompt-vaccine-long-covid. (2023)
Henderson, Alasdair D; Butler-Cole, Ben FC; Wiedemann, Milan; Evans, David; Smith, Rebecca
zmhesketh/2023_TBVaccine_Confidence. (2025)
Hesketh, Zsofia
dchodge/nambcea. (2022)
Hodgson, David
seroanalytics/serojump. (2025)
Hodgson, David
Trade-offs in diagnostic algorithm, population coverage, and duration of community screening for tuberculosis: a modelling study. (2026)
Horton, Katherine C.; Richards, Alexandra S; Schwalb, Alvaro; Houben, Rein M. G. J.
Assessing the impact of the 2018 Changchun Changsheng vaccine incident on childhood vaccination in China. (2023)
Hou, Zhiyuan; Lai, Xiaozhen; Liu, Yang; Jit, Mark; Larson, Heidi; Hai, Fang
Social Mobilization Action Consortium: Community Engagement data from the 2014-2016 Sierra Leone Ebola outbreak. (2019)
Hébert-Dufresne, Laurent; Althouse, Benjamin M.; Skrip, Laura; Bedson, Jamie
Measles Seroprevalence Systematic Review and Bias Assessment 1962-2019. (2024)
Institute for Health Metrics and Evaluation (IHME); London School of Hygiene and Tropical Medicine
Data file for the presented analysis in "Acceptability of COVID-19 self-testing among social and clinical vulnerable populations using a decentralized testing model in Abuja, Nigeria; A mixed methods analysis of an implementation study". (2026)
Isere, Elvis Efe; Bimba, John Samson; Dunkley, Yasmin; Atuwo, David; Nightingale, Emily; Ekwu, James; Ibrahim, Ambi Mamman; Adamu, Gabriella Ofeh; Omoregie, Godpower; Okonkwo, Yamen; Desmond, Nicola; Hatzold, Karin; Corbett, Elizabeth L.
ZeinaJamaluddine/gaza_mortality_capture_recapture. (2024)
Jamaluddine, Zeina; Checchi, Francesco
CoMix data (last round in BE, CH, NL and UK). (2024)
Jarvis, Christopher I.; Coletti, Pietro; Backer, Jantien; Munday, James D.; Faes, Christel; Beutels, Philippe; Althaus, Christian; Low, Nicola; Wallinga, Jacco; Hens, Niel; Edmunds, John
Model for "Estimating the health and macroeconomic burdens of tuberculosis in India, 2021-2040". (2024)
Jensen, Henning Tarp
folder_zip
kaitejohnson/School_reopening. (2020)
Johnson, Kaitlyn E.
wastewater-informed-covid-forecasting. (2024)
Johnson, Kaitlyn E.
epinowcast/baselinenowcast-paper. (2025)
Johnson, Kaitlyn E.; Abbott, Sam; Bracher, Johannes
Replication dataset for results reported in: A global assessment of dengue seasonality: Applying a novel, proportion-based method to case time series from 1990 to 2024. (2026)
Joshi, Kishen; Brady, Oliver J.; Lim, Ahyoung; Susong, Katie; Liu, Yang
EpiFusion Analysis Framework Software Article. (2025)
Judge, Ciara
ciarajudge/EpiFusion. (2024)
Judge, Ciara
ciarajudge/EpiFusion: EpiFusionv1.0. (2025)
Judge, Ciara
ciarajudge/EpiFusionUtilities. (2025)
Judge, Ciara
ciarajudge/EpiFusion_PublicationRepo. (2024)
Judge, Ciara
ciarajudge/EpiFusion_Vignettes: F1000 Article Release. (2025)
Judge, Ciara
hyolimkang/CHIK_VIM. (2025)
Kang, Hyolim
Replication Data for: Age-dependent acquisition of IgG antibodies to Shigella serotypes – a retrospective analysis of sero-prevalence in Kenyan children. (2023)
Kapulu, Melissa C; Muthumbi, Esther; Otieno, Edward; Rossi, Omar; Ferruzzi, Pietro; Necchi, Francesca; Acquaviva, Alessandra; Martin, Laura B; Orindi, Benedict; Mwai, Kennedy; Mwanzu, Alfred; Bigogo, Godfrey M; Verani, Jennifer R; Mbae, Cecilia; Nyundo, Christopher; Agoti, Charles N; Nakakana, Usman Nasir; Conti, Valentino; Bejon, Philip; Kariuki, Samuel; Scott, J Anthony G; Micoli, Francesca; Podda, Audino
ckim0509/amr_cost. (2025)
Kim, Chaelin
kingaa/pomp. (2025)
King, Aaron A; O'Dea, Eamon; Asfaw, Kidus; Wheeler, Jesse; Breto, Carles; Ionides, Edward; Akinshin, Andrey; Voipio, Timo; Funk, Sebastian
NaomiWaterlow/vivli_paper_kg: First release. (2024)
Knight, Gwenan M.; Fuller, Naomi M.; Wildfire, Jacob; Waterlow, Naomi
NaomiWaterlow/Future_projections_AMR. (2025)
Knight, Gwenan M.; Waterlow, Naomi
fkrauer/RSV-VACC-DE. (2024)
Krauer, Fabienne
adamkucharski/fiji-denv3-2014. (2019)
Kucharski, Adam J
joshwlambert/DAISIEprepExtra. (2024)
Lambert, Joshua W.
DAISIEmainland. (2024)
Lambert, Joshua W.; Bilderbeek, Richèl; Santos Neves, Pedro
superspreading: Understand Individual-Level Variation in Infectious Disease Transmission. (2025)
Lambert, Joshua W.; Kucharski, Adam J.; Adam, Dillon C.; Funk, Sebastian; Gupte, Pratik; Gruson, Hugo; Azam, James M.; Hartgerink, Chris
epiparameterDB: Database of Epidemiological Parameters. (2024)
Lambert, Joshua W.; Kucharski, Adam J.; Tamayo, Carmen
simulist: Simulate Disease Outbreak Line List and Contacts Data. (2025)
Lambert, Joshua W.; Tamayo, Carmen; Gruson, Hugo; Gupte, Pratik R.; Kucharski, Adam J.; Hartgerink, Chris; Funk, Sebastian
AR.IA App all datasets. (2019)
Leclerc, Quentin J.; Naylor, Nichola R.; Aiken, Alexander M.; Coll, Francesc; Knight, Gwenan M.
AR.IA App drug breakdown. (2019)
Leclerc, Quentin J.; Naylor, Nichola R.; Aiken, Alexander M.; Coll, Francesc; Knight, Gwenan M.
AR.IA App economic data. (2019)
Leclerc, Quentin J.; Naylor, Nichola R.; Aiken, Alexander M.; Coll, Francesc; Knight, Gwenan M.
Database for pay-it-forward to reduce HPV vaccine delay and increase uptake. (2025)
Li, Jing; Li, Yifan; Qin, Chuanyu; He, Yu; Lu, Haidong; Xie, Yewei; Ong, Jason J.; Lu, Yajiao; Yang, Ying; Yang, Fan; Du, Heng; Gong, Wenfeng; Zou, Fei; Larson, Heidi J.; Jit, Mark; Lin, Leesa; Smith, Jennifer S.; Geng, Elvin H.; Xu, Dong; Tang, Weiming; Tang, Shenglan; Tucker, Joseph D.; Wu, Dan
ahyoung-lim/Arbo_riskmaps_public. (2025)
Lim, Ahyoung
OpenDengue/master-repo. (2024)
Lim, Ahyoung; Brady, Oliver J
Data and code from "The overlapping global distribution of dengue, chikungunya, Zika and yellow fever". (2025)
Lim, Ahyoung; Brady, Oliver J.
Phylogenetic inference of pneumococcal transmission from cross-sectional data, a pilot study. (2023)
London School of Hygiene & Tropical Medicine
Data and R-code to accompany 'Modelling the impact of climate and the environment on the spatiotemporal dynamics of Lyme borreliosis in Germany'. (2025)
Lotto Batista, Martín; Carvalho, Bruno; Gibb, Rory; Solaraju-Murali, Balakrishnan; Flasche, Stefan; Castell, Stefanie; Ghozzi, Stéphane; Lowe, Rachel
Contexts, Facilitators, and Barriers to Integrating Portable Genomic Sequencing in Outbreak Response: A Qualitative Study from Coastal Kenya. (2025)
Makena, Evelyn; Wang, Ling; Okanda, Dorcas; Carter, Daniel; Leggio, Cristina; Odhiambo, Juliet; Munyoki, Catherine; Abdalla, Abbbas; Agoti, Charles N.; Gatie, Victor; Adam, Ahmed; Wasike, Hildergard; Kassim, Salim; Onwonga, Vera; Robaa, Abdi; Ndia, Millicent; Kiiru, John; Kingwara, Leonard; Madada, Rukia; Lang'at, Paul; Hargreaves, James R.; Hughes, Gwenda; Eunice Wangeci, Kagucia; Haque, Farhana; Githinji, George
cleanepi: Clean and Standardize Epidemiological Data. (2024)
Mané, Karim; Jombart, Thibaut; Bah, Bubacarr; Ahadzie, Bankolé; Mohammed, Nuredin; Degoot, Abdoelnaser M.; Gruson, Hugo; Gupte, Pratik R.; Azam, James M.; Lambert, Joshua W.; Hartgerink, Chris
Geospatial analysis of leptospirosis clusters and risk factors in two provinces of the Dominican Republic. (2025)
Martin, Beatris Mario; Sartorius, Benn; Mayfield, Helen J.; Cadavid Restrepo, Angela M.; Kiani, Behzad; Then Paulino, Cecilia J.; Etienne, Marie Caroline; Skewes-Ramm, Ronald; de St. Aubin, Michael; Dumas, Devan; Garnier, Salomé; Duke, William; Peña, Farah; Abdalla, Gabriela; de la Cruz, Lucia; Henríquez, Bernarda; Baldwin, Margaret; Kucharski, Adam J.; Nilles, Eric J.; Lau, Colleen L.
Data and code for "Influence of setting and diagnostic algorithm on disease severity among people diagnosed with symptomatic and asymptomatic tuberculosis in South Africa". (2026)
McCreesh, Nicky
description
RuobingMei/Gender-Equity-and-Sustainable-Development_A-Systematic-Review-and-Meta-Analysis. (2025)
Mei, Ruobing
Household fuel use and adverse pregnancy outcomes. (2024)
Mezmur, Haymanot; Tefera, Maleda; Jemal, Mohamed; Kahsay, Bersabeh; Assefa, Nega
Data for: "Aetiology of vaginal discharge, urethral discharge, and genital ulcer in sub-Saharan Africa: A systematic review and meta-regression". (2024)
Michalow, Julia; Walters, Magdalene K.; Edun, Olanrewaju; Wybrant, Max; Davies, Bethan; Kufa, Tendesayi; Mathega, Thabitha; Chabata, Sungai T.; Cowan, Frances M.; Cori, Anne; Boily, Marie-Claude; Imai-Eaton, Jeffrey W.
Variables extracted and study-wise data used in the systematic review. (2026)
Mogasale, Vijayalaxmi V.; Zhang, Peixuan; John, Jacob; Farooqui, Habib Hasan; Ray, Arindam; Mogasale, Vittal; Parry, Christopher M.; Dhoubhadel, Bhim Gopal; Edmunds, W. John; Clark, Andrew; Abbas, Kaja M.
ghr/wnv_casecrossover. (2024)
Moirano, Giovenale; Fletcher, Chloe; Semenza, Jan C.; Lowe, Rachel
EpiRecipes/EpiPolicies. (2026)
Montes, Sandra; Frost, Simon
Epidemiological and genomic investigation of chikungunya virus in Rio de Janeiro state, Brazil, between 2015 and 2018. (2023)
Moreira, Filipe Romero Rebello; Menezes, Mariane Talon de; Salgado-Benvindo, Clarisse; Whittaker, Charles; Cox, Victoria; Chandradeva, Nilani; Paula, Hury Hellen Souza de; Martins, André Frederico; Chagas, Raphael Rangel das; Brasil, Rodrigo Decembrino Vargas; Cândido, Darlan da Silva; Herlinger, Alice Laschuk; Ribeiro, Marisa de Oliveira; Arruda, Monica Barcellos; Alvarez, Patricia; Tôrres, Marcelo Calado de Paula; Dorigatti, Ilaria; Brady, Oliver J.; Voloch, Carolina Moreira; Tanuri, Amilcar; Iani, Felipe; Souza, William Marciel de; Cardozo, Sergian Vianna; Faria, Nuno Rodrigues; Aguiar, Renato Santana
epiforecasts/ebola-expert-elicitation. (2025)
Munday, James D.; Funk, Sebastian
epireview: Tools to update and summarise the latest pathogen data from the Pathogen Epidemiology Review Group (PERG). (2025)
Naidoo, Tristan; Nash, Rebecca; Morgenstern, Christian; Doohan, Patrick; McCabe, Ruth; Lambert, Joshua W.; Sheppard, Richard; Santoni, Cosmo; Rawson, Thomas; Ruybal-Pesántez, Shazia; Unwin, Juliette H.; Cuomo-Dannenburg, Gina; McCain, Kelly; Hicks, Joseph; Cori, Anne; Bhatia, Sangeeta
NikkiR08/AMR-UCR. (2025)
Naylor, Nichola R.
NikkiR08/VAF_AMR_EconBurden. (2025)
Naylor, Nichola R.
Extensions of Health Economic Evaluation in R for Microsoft Excel Users: A Tutorial for Incorporating Heterogeneity and Conducting Value of Information Analyses. (2022)
Naylor, Nichola R.; Williams, Jack; Green, Nathan; Lamrock, Felicity; Briggs, Andrew
rsetienne/DAISIE. (2023)
Neves, Pedro Santos; Lambert, Joshua W.; Etienne, Rampal S.; Bilderbeek, Richel; Xie, Shu; Valente, Luis; Hildenbrandt, H; Scherrer, Raphaël; Yangshen0325
esnightingale/polio-ffi-model. (2025)
Nightingale, Emily
esnightingale/vl-collection-methods-xm. (2023)
Nightingale, Emily
esnightingale/vl-disaggregation. (2024)
Nightingale, Emily
esnightingale/vl-spatial-diagnosis-delay. (2025)
Nightingale, Emily
enilles1/immunoepidemiology. (2024)
Nilles, Eric J.; Kucharski, Adam J.
Interview Questions for WW Dashboards. (2024)
O'reilly, Kathleen M.
tjhladish/AbcSmc. (2023)
Pearson, Carl A. B.; Hladish, Thomas
tjhladish/dengue-abm. (2023)
Pearson, Carl A. B.; Hladish, Thomas; Pillai, Alexander N.; Chao, Dennis
paramix: Aggregate and Disaggregate Continuous Parameters for Compartmental Models. (2025)
Pearson, Carl A. B.; Proctor, Simon; Goodfellow, Lucy
cmmid/comix_mobility. (2025)
Prestige, Em
rachaelpung/temporal_networks. (2024)
Pung, Rachael; Kucharski, Adam J.; Firth, Josh; Russell, Timothy W.; Rogers, Tim; Lee, Vernon
Excel file containing extracted data for "The utility of infectious disease modelling in informing decisions for outbreak response: A scoping review". (2025)
Rao, Duaa; Tanveer, Aleena; Iftekhar, Emil Nafis; Müller, Sophie Alice; Sherratt, Katharine; Röbl, Klara; Carrillo-Bustamante, Paola; Heldt, Katharina; Fitzner, Julia; Hanefeld, Johanna; Funk, Sebastian
alexandrasrichards/natural_history_tb_disease. (2023)
Richards, Alexandra S
alxsrobert/measles_england_sir. (2024)
Robert, Alexis; Suffel, Anne Marie
S1 Table for "Assessing vulnerability for future Zika virus outbreaks using seroprevalence data and environmental suitability maps". (2024)
Roell, Yannik; Pezzi, Laura; Lozano-Parra, Anyela; Olson, Daniel; Messina, Jane; Quandelacy, Talia; Drexler, Jan Felix; Brady, Oliver; Karimzadeh, Morteza; Jaenisch, Thomas
Fits and plot data for the paper: "Combined analyses of within-host SARS-CoV-2 viral kinetics and information on past exposures to the virus in a human cohort identifies intrinsic differences of Omicron and Delta variants". (2023)
Russell, Timothy W.
thimotei/legacy_nAb_kinetics. (2024)
Russell, Timothy W.; Kucharski, Adam J.
cmmid/h5n1_uk_scenario_modelling. (2026)
Russell, Timothy W.; Lambert, Joshua W.; Quilty, Billy; Azam, James M.
cmmid/h5n1_uk_scenario_model. (2026)
Russell, Timothy; Lambert, Joshua W.; Quilty, Billy; Azam, James M.
aschwalbc/MtbInf. (2026)
Schwalb, Alvaro; Dodd, Peter J
hubverse-org/hubEnsemblesManuscript. (2025)
Shandross, Li; Howerton, Emily; Krystalli, Anna; Reich, Nicholas G.; Contamin, Lucie; Ray, Evan; Gruson, Hugo; Funk, Sebastian; Hochheiser, Harry; Kamvar, Zhian N.
Data from: Global yellow fever vaccination coverage from 1970 to 2016: an adjusted retrospective analysis. (2018)
Shearer, Freya M; Moyes, Catherine L; Pigott, David M; Brady, Oliver J.; Marinho, Fatima; Deshpande, Aniruddha; Longbottom, Joshua; Browne, Annie J; Kraemer, Moritz U G; O'reilly, Kathleen M.; Hombach, Joachim; Yactayo, Sergio; de Araújo, Valdelaine E M; da Nóbrega, Aglaêr A; Mosser, Jonathan F; Stanaway, Jeffrey D; Lim, Stephen S; Hay, Simon I; Golding, Nick; Reiner, Robert C
Improving modelling for epidemic responses: reflections. (2023)
Sherratt, Katharine; Abbott, Sam; Carnegie, Anna; Liu, Yang
epiforecasts/multi-model-information: Publication release. (2024)
Sherratt, Katharine; Funk, Sebastian
epiforecasts/eval-by-method. (2026)
Sherratt, Katharine; Funk, Sebastian; Abbott, Sam
Dataset for "Genomic characterisation of Salmonella enterica serovar Wangata isolates obtained from different sources reveals low genomic diversity". (2020)
Simpson, Kelly M J; Mor, Siobhan M; Ward, Michael P; Collins, Julie; Flint, James; Hill-Cawthorne, Grant A; El Ghany, Moataz Abd
Data collection tools and dataset from tracer study of Q4D Lab, a locally developed and owned coding and biostatistics program in Liberia. (2024)
Skrip, Laura; Barcon, Snoyonoh; Davis, George; Yeabah, Trokon O.; Kromah, Mulbah
Structural and social factors affecting COVID-19 vaccine uptake among healthcare workers and older people in Uganda: A qualitative analysis. Data file. (2024)
Sliversteri, Sande; Ssali, Agnes; Bahemuka, Ubaldo M.; Nsubuga, Denis; Muwanga, Moses; Nsereko, Chris; Ssemwanga, Edward; Robert, Asaba; Seeley, Janet; Elliott, Alison; Ruzagira, Eugene
tomsumner/Timing_of_vaccination. (2025)
Sumner, Tom
Global Dengue Observatory. (2026)
Susong, Katie; Lim, Ahyoung; Joshi, Kishen; Brady, Oliver J.
Interviews among key stakeholders in South Africa to understand the priorities and implementation strategies of a potential new TB vaccine. (2025)
Thomas, Katherine; Okoro, Choice; Ntshiqa, Thobani; Damovsky, Verena; Goldberg, Deanne; Ramokhoase, Omphile; Clark, Rebecca; Jassat, Waasila; Churchyard, Gavin J.; Abdullah, Fareed; Kubjane, Mmamapudi; Seeley, Janet; Charalambous, Salome; White, Richard G
description
katietiley/Wolbachia_TPP_PPC. (2024)
Tiley, Katherine
S1 Data - Higher loss of livelihood and impoverishment in households affected by tuberculosis compared to non-tuberculosis affected households in Zimbabwe: A cross-sectional study. (2024)
Timire, Collins; Houben, Rein M. G. J.; Pedrazzoli, Debora; Ferrand, Rashida A.; Calderwood, Claire J.; Bond, Virginia; Mbiba, Fredrick; Kranzer, Katharina
kevinvzandvoort/RSV-age-distributions. (2025)
Van Zandvoort, Kevin
kevinvzandvoort/eepicc_idp_pneumosil_safety. (2025)
Van Zandvoort, Kevin
Effectiveness of pneumococcal vaccination campaigns in humanitarian settings: a modelling study. Data, model code, and analyses. (2026)
Van Zandvoort, Kevin; Bobe, Mohamed Omer; Hassan, Abdirahman Ibrahim; Cummings, Rachael; Warsame, Abdihamid; Pell, Casey L; Abdi, Mohamed Ismail; Ibrahim, Saed; Mcgowan, Catherine R; Mulholland, E Kim; Satzke, Catherine; Eggo, Rosalind M.; Hergeye, Mohamed Abdi; Checchi, Francesco; Flasche, Stefan
Pre-vaccination carriage prevalence of Streptococcus pneumoniae serotypes among internally displaced people in Somaliland. Data and analyses. (2024)
Van zandvoort, Kevin; Hassan, Abdirahman Ibrahim; Bobe, Mohamed Omer; Pell, Casey L; Ahmed, Mohamed Saed; Ortika, Belinda D; Ibrahim, Saed; Abdi, Mohamed Ismail; Karim, Mustapha A; Eggo, Rosalind M.; Yusuf, Sulieman; Hinds, Jason; Soleman, Saeed Mohamood; Cummings, Rachael; Mcgowan, Catherine R; Mulholland, E Kim; Satzke, Catherine; Hergeeye, Mohamed Abdi; Checchi, Francesco; Flasche, Stefan
gwenknight/ecdc_data_age_sex. (2024)
Waterlow, Naomi; Knight, Gwen
xiangfstats/GenieR: A final release. (2019)
Xiang, Fei; Frost, Simon