Item Type Title No Grouping

A

AndriaMousa/SP-resistance-protective-efficacy-code: v1.1. (2025) Mousa, Andria

ahyoung-lim/Arbo_riskmaps_public. (2025) Lim, Ahyoung

AmpliconTyper. (2025) Spadar, Anton, Mahindroo, Jaspreet, Troman, Catherine, Owusu, Michael, Adu-Sarkodie, Yaw, Abraham, Dilip, Blossom Benny, Govindan, Karthikeyan, Mohan, Venkata Raghava, Dyson, Zoe Anne, Grassly, Nicholas, Holt, Kathryn E.

B

Baselines_Application_Data. (2025) Stapper, Manuel

C

Contagent. (2025) Greener, Robert Alexander

cmmid/comix_mobility. (2025) Prestige, Em

Code for "Mapping the evidence of novel plant-based foods: A systematic review of nutritional, health, and environmental impacts in high-income countries". (2025) Jelmar Sietsma, Anne, Nájera Espinosa, Sarah

D

Data and R code to accompany 'Compound and cascading effects of climatic extremes on dengue outbreak risk in the Caribbean: an impact-based modelling framework with long-lag and short-lag interactions'. (2025) Fletcher, Chloe, Moirano, Giovenale, Alcayna, Tilly, Rollock, Leslie, Van Meerbeeck, Cédric J, Mahon, Roche, Trotman, Adrian, Boodram, Laura-Lee, Browne, Tia, Best, Sabu, Lührsen, Daniela, Díaz, Avriel R, Dunbar, Willy, Lippi, Catherine A, Ryan, Sadie J, Colón-González, Felipe J, Stewart-Ibarra, Anna M, Lowe, Rachel

Data and R-code to accompany 'Modelling the impact of climate and the environment on the spatiotemporal dynamics of Lyme borreliosis in Germany'. (2025) Lotto Batista, Martín, Carvalho, Bruno, Gibb, Rory, Solaraju-Murali, Balakrishnan, Flasche, Stefan, Castell, Stefanie, Ghozzi, Stéphane, Lowe, Rachel

Data and code from "The overlapping global distribution of dengue, chikungunya, Zika and yellow fever". (2025) Lim, Ahyoung, Brady, Oliver J.

Dataset: Early life serological profiles and the development of natural protective humoral immunity to Streptococcus pyogenes in a high burden setting. (2025) Keeley, Alexander J.

E

epinowcast/baselinenowcast-paper. (2025) Johnson, Kaitlyn E., Abbott, Sam, Bracher, Johannes

esnightingale/vl-spatial-diagnosis-delay. (2025) Nightingale, Emily

epiverse-trace/tutorials-late. (2025) Campos, Andree Valle, Minter, Amanda, Gruson, Hugo, Degoot, Abdoelnaser M., Gupte, Pratik, Hartgerink, Chris, Azam, James M.

epiforecasts/eval-by-method. (2025) Sherratt, Katharine, Funk, Sebastian

ecthomson/Contamination-Filter. (2025) Thomson, Emma C.

ecthomson/Contamination-Phylogeny. (2025) Thomson, Emma C.

epinowcast/epidist. (2025) Abbott, Sam, Howes, Adam, Park, Sang Woo, Funk, Sebastian, Bayer, Damon, DeWitt, Michael

G

gigs: Assess Fetal, Newborn, and Child Growth with International Standards. (2025) Parker, Simon R, Ohuma, Eric O., Vesel, Linda

K

kingaa/pomp. (2025) King, Aaron A, O'Dea, Eamon, Asfaw, Kidus, Wheeler, Jesse, Breto, Carles, Ionides, Edward, Akinshin, Andrey, Voipio, Timo, Funk, Sebastian

klebgenomics/Kaptive. (2025) Wick, Ryan R., Stanton, Thomas, Wyres, Kelly L, Holt, Kathryn E.

L

lucy-gf/flu_model_LG. (2025) Goodfellow, Lucy

LuciaSegovia/geospatial_analysis. (2025) Segovia De La Revilla, Lucia

M

migariane/eltmle. (2025) Luque-Fernandez, Miguel Angel, Maringe, Camille, Smith, Matthew J.

N

NikkiR08/AMR-UCR. (2025) Naylor, Nichola R.

NikkiR08/VAF_AMR_EconBurden. (2025) Naylor, Nichola R.

O

opensafely/post-covid-kidney-outcomes. (2025) Mahalingasivam, Viyaasan, Zheng, Bang, lshbz1, Dillingham, Iain

R

R Scripts for Analysis of food-group level household and individual dietary data. (2025) Sandalinas, Fanny, Osman, Mohammed, Goto, Rie, Joy, Edward

Robinah23/Community-Vaccine-Impact-Vulnerability-Index-. (2025) Nalwanga, Robinah

S

superspreading: Understand Individual-Level Variation in Infectious Disease Transmission. (2025) Lambert, Joshua W., Kucharski, Adam J., Adam, Dillon C., Funk, Sebastian, Gupte, Pratik, Gruson, Hugo, Azam, James M., Hartgerink, Chris

ShayAdams/student_metrics_moodlelshtm. (2025) Soremekun, Seyi

simulist: Simulate Disease Outbreak Line List and Contacts Data. (2025) Lambert, Joshua W., Tamayo, Carmen, Gruson, Hugo, Gupte, Pratik R., Kucharski, Adam J., Hartgerink, Chris, Funk, Sebastian

seroanalytics/serojump. (2025) Hodgson, David

T

toshiakiasakura/polio_environmental_surveillance. (2025) Asakura, Toshiaki R.

tomsumner/Timing_of_vaccination. (2025) Sumner, Tom

V

Validation of algorithms identifying diagnosed Obstructive Sleep Apnoea and narcolepsy in coded primary care and linked hospital activity data in England. (2025) Strongman, Helen